Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 51 of 207
Found at i:14917404 original size:24 final size:24
Alignment explanation
Indices: 14917375--14917427 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
14917365 AGGCATGCAT
14917375 GTACA-TAATGATGTTAGGGAC-TA
1 GTACATTAAT-ATGTTAGGGACGTA
14917398 GATACATTAATATGTTAGGGACGTA
1 G-TACATTAATATGTTAGGGACGTA
14917423 GTACA
1 GTACA
14917428 ATAGTACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.04
24 19 0.70
25 7 0.26
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (24 bp):
GTACATTAATATGTTAGGGACGTA
Found at i:14917419 original size:140 final size:141
Alignment explanation
Indices: 14917119--14917460 Score: 385
Period size: 140 Copynumber: 2.4 Consensus size: 141
14917109 GACATGCATT
* * * * *
14917119 TACATTGTGATATTAGGGATATAGTATAATAATACACATATCATAAG-AGGTAATGCATGTAATT
1 TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGG-AATGCATGTAATT
* * * * * *
14917183 TGAGTTGATAGGGGCTATGTACATAAGCCACTTATCATAATAAGGTATGCATGTACATATTGATG
65 TCAGTTGATAGGGACTATGTACATAAGCCACTAAGCATAATAAGGCATGCATGTACATAATGATG
14917248 TCAGGGACTATG
130 TCAGGGACTATG
* *
14917260 TACATTGTGATGTTGGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
1 TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
* *
14917325 CAGTT-ATTAGGGACTA-GATACATCA-TCA-TAAGGCATAATAAGGCATGCATGTACATAATGA
66 CAGTTGA-TAGGGACTATG-TACATAAGCCACTAA-GCATAATAAGGCATGCATGTACATAATGA
*
14917386 TGTTAGGGACTA-G
128 TGTCAGGGACTATG
* * * *
14917399 ATACATTAAT-ATGTTAGGGACGTAGTACAATAGTACACATATTAT-AGTAAGGCATGCATGTA
1 -TACATT-ATGATGTTAGGGACATAGTATAATAGTACACATATAATAAG-AAGGAATGCATGTA
14917461 CATTGTGATG
Statistics
Matches: 174, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.03
140 91 0.52
141 75 0.43
142 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (141 bp):
TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
CAGTTGATAGGGACTATGTACATAAGCCACTAAGCATAATAAGGCATGCATGTACATAATGATGT
CAGGGACTATG
Found at i:14917481 original size:199 final size:198
Alignment explanation
Indices: 14917257--14917639 Score: 490
Period size: 199 Copynumber: 1.9 Consensus size: 198
14917247 GTCAGGGACT
** *
14917257 ATGTACATTGTGATGTTGGGGACATAGTATAATAGTACACATATAATAAGAA-GGAATGCATGTA
1 ATGTACATTGTGATGTCAGGGACATAGTATAATAGTACACATATAATAA-AAGGGAATGCATATA
* *
14917321 ATTTCAGTTATTAGGGACTA-GATAC-A-TCATCATAAGGCATAATAAGGCATGCATGTACATAA
65 ATTTCAGTTAGTAGGGACTATG-TACGAGTCA-CAT-A-GCATAATAAGGCATGCATGCACATAA
* *
14917383 TGATGTTAGGGACTA-GATACATTAAT-ATGTTAGGGACGTAGTACAATAGTACACATATTATAG
126 TGATGTTAGAGACTATG-TACATT-ATGATGTTAGGGACATAGTACAATAGTACACATATTATAG
14917446 TAAGGCATGC
189 TAAGGCATGC
* *
14917456 ATGTACATTGTGATGTCAGGGACATATTATAATAGTACACATATCATAAAAGGGAATGCATATAA
1 ATGTACATTGTGATGTCAGGGACATAGTATAATAGTACACATATAATAAAAGGGAATGCATATAA
* * **
14917521 TTTGAGTTAGTAGGGACTATGTACGTAGGTCACATATCATAATAAGGCATGCATGCACATTTTGA
66 TTTCAGTTAGTAGGGACTATGTACG-A-GTCACATAGCATAATAAGGCATGCATGCACATAATGA
* * * *
14917586 TGTTAGAGATTATGTACATTGTGATGTTAGGGACATAGTATAATAGTATACATA
129 TGTTAGAGACTATGTACATTATGATGTTAGGGACATAGTACAATAGTACACATA
14917640 CCATAAGAAG
Statistics
Matches: 159, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
198 2 0.01
199 78 0.49
200 70 0.44
201 3 0.02
202 3 0.02
203 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (198 bp):
ATGTACATTGTGATGTCAGGGACATAGTATAATAGTACACATATAATAAAAGGGAATGCATATAA
TTTCAGTTAGTAGGGACTATGTACGAGTCACATAGCATAATAAGGCATGCATGCACATAATGATG
TTAGAGACTATGTACATTATGATGTTAGGGACATAGTACAATAGTACACATATTATAGTAAGGCA
TGC
Found at i:14917622 original size:141 final size:141
Alignment explanation
Indices: 14917456--14917765 Score: 408
Period size: 141 Copynumber: 2.2 Consensus size: 141
14917446 TAAGGCATGC
* * * *
14917456 ATGTACATTGTGATGTCAGGGACATATTATAATAGTACACATATCATAA-AAGGGAATGCATATA
1 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAA-GGAATGCATACA
* * *
14917520 ATTTGAGTTAGTAGGGACTATGTAC-GTAGGTCACATATCATAATAAGGCATGCATGCACATTTT
65 ATTTGAGTTAGTAGGAACTATGTACAG-AAGTCACATATCATAATAAGGCATGCATGCACATGTT
*
14917584 GATGTTAGAGATT
129 GATGTTAGAGACT
* *
14917597 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTATACATACCATAAGAAGGAATGCATGCAA
1 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAAGGAATGCATACAA
** ** * *
14917662 TTTGAGTTAGTTTGAACTATGTACAGAAGTCGTATATCATGATAAGGCATGCATGTACATGTTGA
66 TTTGAGTTAGTAGGAACTATGTACAGAAGTCACATATCATAATAAGGCATGCATGCACATGTTGA
*
14917727 TGTTAGGGACT
131 TGTTAGAGACT
* * *
14917738 ATGTACATTATGATCTTAGGAACATAGT
1 ATGTACATTGTGATGTTAGGGACATAGT
14917766 TGTTAGGCTC
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
141 144 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (141 bp):
ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAAGGAATGCATACAA
TTTGAGTTAGTAGGAACTATGTACAGAAGTCACATATCATAATAAGGCATGCATGCACATGTTGA
TGTTAGAGACT
Found at i:14918656 original size:24 final size:24
Alignment explanation
Indices: 14918629--14918681 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
14918619 CTCTTCATGA
14918629 TGCAACATACTGAATAGGTCTTGT
1 TGCAACATACTGAATAGGTCTTGT
14918653 TGCAACATACTGAATAGGTCTTGT
1 TGCAACATACTGAATAGGTCTTGT
14918677 TGCAA
1 TGCAA
14918682 TGACCAATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (24 bp):
TGCAACATACTGAATAGGTCTTGT
Found at i:14931128 original size:25 final size:25
Alignment explanation
Indices: 14931100--14931153 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
14931090 ACTGTCTTTC
* *
14931100 ATAGTATATCCTAAAACTGCTATAG
1 ATAGTATATACTAAAACTACTATAG
* *
14931125 ATAGTATATACTGAGACTACTATAG
1 ATAGTATATACTAAAACTACTATAG
14931150 ATAG
1 ATAG
14931154 ACTATGCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (25 bp):
ATAGTATATACTAAAACTACTATAG
Found at i:14942496 original size:12 final size:12
Alignment explanation
Indices: 14942479--14942504 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14942469 TTGCAAATGA
14942479 TTCATTTCCATT
1 TTCATTTCCATT
14942491 TTCATTTCCATT
1 TTCATTTCCATT
14942503 TT
1 TT
14942505 TAGAAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCATTTCCATT
Found at i:14945768 original size:45 final size:45
Alignment explanation
Indices: 14945717--14945804 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
14945707 TGTGAACCGA
* *
14945717 ACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCAG
14945762 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
14945805 GAGTATCTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCAG
Found at i:14945923 original size:38 final size:37
Alignment explanation
Indices: 14945881--14945953 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
14945871 AGGTGTGGAA
*
14945881 TTGAATTGAATAT-TGACTTAGAAA-TGGAAAAGTGAATT
1 TTGAATTGAAT-TGTGA-TT-GAAAGTGAAAAAGTGAATT
14945919 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
14945954 ATTATGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.42, C:0.01, G:0.23, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAATT
Found at i:14949080 original size:20 final size:20
Alignment explanation
Indices: 14949038--14949098 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
14949028 AATTTTAACC
**
14949038 TTTTTATATATTTTTTTTGAA
1 TTTTTATA-ATTTTTTTAAAA
14949059 TTTTT-TAAATTTTTTTAAAA
1 TTTTTAT-AATTTTTTTAAAA
*
14949079 TTTTTATAATTTATTTAAAA
1 TTTTTATAATTTTTTTAAAA
14949099 ATATAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 28 0.80
21 7 0.20
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTATAATTTTTTTAAAA
Found at i:14949095 original size:11 final size:9
Alignment explanation
Indices: 14949050--14949176 Score: 53
Period size: 9 Copynumber: 13.7 Consensus size: 9
14949040 TTTATATATT
*
14949050 TTTTTTGAA
1 TTTTTTAAA
14949059 TTTTTTAAA
1 TTTTTTAAA
14949068 TTTTTTTAAA
1 -TTTTTTAAA
*
14949078 ATTTTTATAA
1 TTTTTTA-AA
14949088 TTTATTTAAA
1 TTT-TTTAAA
** *
14949098 -AATATAAA
1 TTTTTTAAA
**
14949106 -TTTAGAAA
1 TTTTTTAAA
14949114 TTTTTATAAA
1 TTTTT-TAAA
* *
14949124 TATTTTGAA
1 TTTTTTAAA
**
14949133 TTTTAAAAA
1 TTTTTTAAA
*
14949142 TTATTTTGAA
1 TT-TTTTAAA
*
14949152 TTTTTGAAAA
1 TTTTT-TAAA
14949162 TTATTTT-AA
1 TT-TTTTAAA
14949171 TTTTTT
1 TTTTTT
14949177 TTGTAATTTT
Statistics
Matches: 87, Mismatches: 23, Indels: 17
0.69 0.18 0.13
Matches are distributed among these distances:
8 14 0.16
9 34 0.39
10 32 0.37
11 7 0.08
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:14949137 original size:28 final size:27
Alignment explanation
Indices: 14949106--14949159 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
14949096 AAAATATAAA
*
14949106 TTTAGAAATT-TTTATAAATATTTTGAAT
1 TTTAAAAATTATTT-TAAAT-TTTTGAAT
*
14949134 TTTAAAAATTATTTTGAATTTTTGAA
1 TTTAAAAATTATTTTAAATTTTTGAA
14949160 AATTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 13 0.57
29 3 0.13
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (27 bp):
TTTAAAAATTATTTTAAATTTTTGAAT
Found at i:14949176 original size:20 final size:20
Alignment explanation
Indices: 14949112--14949175 Score: 89
Period size: 19 Copynumber: 3.4 Consensus size: 20
14949102 TAAATTTAGA
*
14949112 AATTTTTATAAA-TATTTTG
1 AATTTTTAAAAATTATTTTG
14949131 AA-TTTTAAAAATTATTTTG
1 AATTTTTAAAAATTATTTTG
*
14949150 AATTTTTGAAAATTATTTT-
1 AATTTTTAAAAATTATTTTG
14949169 AATTTTT
1 AATTTTT
14949176 TTTGTAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.20
19 18 0.44
20 15 0.37
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
AATTTTTAAAAATTATTTTG
Found at i:14950637 original size:19 final size:19
Alignment explanation
Indices: 14950613--14950656 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
14950603 ATTAAGAACT
14950613 TTTAAATTT-TAAAAAATA
1 TTTAAATTTATAAAAAATA
*
14950631 TTATAAATTTATAAAAATTA
1 TT-TAAATTTATAAAAAATA
14950651 TTTAAA
1 TTTAAA
14950657 AAATAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTAAATTTATAAAAAATA
Found at i:14952752 original size:44 final size:44
Alignment explanation
Indices: 14952695--14952784 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
14952685 GTTGAAATAA
* * *
14952695 AATAGAATTTGTGATAATTATACATTTAAAAATATTTATAATTT
1 AATAGAATTTGTGATAATTACACATTTAAAAATAATTAGAATTT
*
14952739 AATAGAATTTGTGATAATTACACTTTTAAAAATAATTAGAATTT
1 AATAGAATTTGTGATAATTACACATTTAAAAATAATTAGAATTT
14952783 AA
1 AA
14952785 ATTACAATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (44 bp):
AATAGAATTTGTGATAATTACACATTTAAAAATAATTAGAATTT
Found at i:14953847 original size:11 final size:10
Alignment explanation
Indices: 14953815--14953852 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
14953805 ATTCTTTGAT
14953815 AATCTTGCCA
1 AATCTTGCCA
14953825 AATCCTTG-CA
1 AAT-CTTGCCA
14953835 AATCTTGCCCA
1 AATCTTG-CCA
14953846 AATCTTG
1 AATCTTG
14953853 ATACCAATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.16
10 8 0.32
11 13 0.52
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32
Consensus pattern (10 bp):
AATCTTGCCA
Found at i:14954140 original size:40 final size:40
Alignment explanation
Indices: 14954096--14954241 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
14954086 CATACCAGTG
* * *
14954096 TGTGGACAAGCCACCAGTATTGCAAATAAGCTGCCAATAT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTAT
* *
14954136 TGTGGACAAGCCACCAGTATTACAGATAAACTGCCAGCAT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTAT
* * * * *
14954176 TATGGACTAGCCATCAATATTGCAGATAAATTGCCAGTAT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTAT
**
14954216 TGTGGACAAGCCAATAGTATTGCAGA
1 TGTGGACAAGCCACCAGTATTGCAGA
14954242 CAAGCTTCCA
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (40 bp):
TGTGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTAT
Found at i:14954156 original size:20 final size:20
Alignment explanation
Indices: 14954096--14954156 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
14954086 CATACCAGTG
14954096 TGTGGACAAGCCACCAGTAT
1 TGTGGACAAGCCACCAGTAT
*** * ** *
14954116 TGCAAATAAGCTGCCAATAT
1 TGTGGACAAGCCACCAGTAT
14954136 TGTGGACAAGCCACCAGTAT
1 TGTGGACAAGCCACCAGTAT
14954156 T
1 T
14954157 ACAGATAAAC
Statistics
Matches: 27, Mismatches: 14, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (20 bp):
TGTGGACAAGCCACCAGTAT
Found at i:14958463 original size:81 final size:81
Alignment explanation
Indices: 14958322--14958471 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
14958312 TTGCATTACG
* * * ** ** * *
14958322 ACCTTAAAATTTAGGTTGCTTCACACTAGAAAAGGGTGTTTAAGATCTTCGTGGATAAAACCAAG
1 ACCTCAAAATTCAGGTTGCTTCACACTAGAAAAGGGTGTTTAAGACCTTAATAAAGAAAACAAAG
14958387 ATTGTGGAGGAAATCA
66 ATTGTGGAGGAAATCA
* *
14958403 ACCTCAAAATTCAGGTTGCTTCATACCTAG-AAAGGGTGTTTGAGACCTTAATAAAGAAAACAAA
1 ACCTCAAAATTCAGGTTGCTTCACA-CTAGAAAAGGGTGTTTAAGACCTTAATAAAGAAAACAAA
14958467 GATTG
65 GATTG
14958472 CAGAGGGAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 53 0.93
82 4 0.07
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (81 bp):
ACCTCAAAATTCAGGTTGCTTCACACTAGAAAAGGGTGTTTAAGACCTTAATAAAGAAAACAAAG
ATTGTGGAGGAAATCA
Found at i:14962291 original size:36 final size:36
Alignment explanation
Indices: 14962220--14962292 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 36
14962210 TTTAAATAGC
*
14962220 GGTGAAGTCGTAAAAGGAAGCCCGATAACCTTTTTT
1 GGTGAAGTCGGAAAAGGAAGCCCGATAACCTTTTTT
* *
14962256 GGTGAAGTCGGAAGTAGGAAGCCCGATGACCTTTTTT
1 GGTGAAGTCGGAA-AAGGAAGCCCGATAACCTTTTTT
14962293 AAATGACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 12 0.36
37 21 0.64
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (36 bp):
GGTGAAGTCGGAAAAGGAAGCCCGATAACCTTTTTT
Found at i:14963328 original size:28 final size:28
Alignment explanation
Indices: 14963295--14963366 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
14963285 ATGTTTTCAT
14963295 TTTGGTCACTTAACTAAAAAAGTCATAA
1 TTTGGTCACTTAACTAAAAAAGTCATAA
* *
14963323 TTTGGTCACTTAACTAAAAAATTTATAA
1 TTTGGTCACTTAACTAAAAAAGTCATAA
*
14963351 TTTGGTCACTGAACTA
1 TTTGGTCACTTAACTA
14963367 TTCAAAAGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (28 bp):
TTTGGTCACTTAACTAAAAAAGTCATAA
Found at i:14963736 original size:31 final size:31
Alignment explanation
Indices: 14963699--14963758 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
14963689 TTAACAACCT
*
14963699 AGTGACTTGAATAAAAACTTTTTAATAGTTC
1 AGTGACTTGAATAAAAACTTTTGAATAGTTC
*
14963730 AGTGACTTGAATGAAAACTTTTGAATAGT
1 AGTGACTTGAATAAAAACTTTTGAATAGT
14963759 CCAATGACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (31 bp):
AGTGACTTGAATAAAAACTTTTGAATAGTTC
Found at i:14967242 original size:22 final size:22
Alignment explanation
Indices: 14967199--14967243 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14967189 TGTTTGTTTT
* *
14967199 ATTATTAAAGGTTATAATTAAA
1 ATTATAAAAGGTTATAAATAAA
14967221 ATTATAAAAGG-TATAAAATAAA
1 ATTATAAAAGGTTAT-AAATAAA
14967243 A
1 A
14967244 CACGTGTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (22 bp):
ATTATAAAAGGTTATAAATAAA
Found at i:14977825 original size:13 final size:13
Alignment explanation
Indices: 14977807--14977831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14977797 AATTTATATT
14977807 TGTGAAAATTTTG
1 TGTGAAAATTTTG
14977820 TGTGAAAATTTT
1 TGTGAAAATTTT
14977832 ATCGTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:14979063 original size:43 final size:42
Alignment explanation
Indices: 14978973--14979056 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
14978963 TGTAATACTA
* * * *
14978973 TGTCTGGGACATTGGCATCGTATATGATTTCGTGTAAGACCC
1 TGTCTGAGACAGTGGCATCGTATATGATTACATGTAAGACCC
*
14979015 TGTCTGAGACAGTGGCATCGTTATTTGATTACATGTAAGACC
1 TGTCTGAGACAGTGGCATCG-TATATGATTACATGTAAGACC
14979057 ACGTCTGGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTCTGAGACAGTGGCATCGTATATGATTACATGTAAGACCC
Found at i:14979074 original size:43 final size:42
Alignment explanation
Indices: 14978917--14979075 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
14978907 TATGTGATAT
* * *
14978917 CGTGTAAGACCACGTTTGGGACGTTGGCATC-AATTTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTT--GA-TTA
* * * * *
14978961 CGTGTAATACTATGTCTGGGACATTGGCATCGTATATGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTA
* *
14979003 CGTGTAAGACC-CTGTCTGAGACAGTGGCATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGATTA
* *
14979046 CATGTAAGACCACGTCTGGGACTTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
14979076 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
42 28 0.30
43 34 0.37
44 27 0.29
45 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTA
Found at i:14989584 original size:25 final size:26
Alignment explanation
Indices: 14989524--14989726 Score: 117
Period size: 25 Copynumber: 8.2 Consensus size: 26
14989514 CCCATTATTA
*
14989524 GCTCTC-ATGAG-TATCCCAATAT-TG
1 GCTCTCTATGAGCT-TCCCGATATATG
* *
14989548 GATCTCT-TGAGCTTCCTGATATATG
1 GCTCTCTATGAGCTTCCCGATATATG
*
14989573 GCTCTCTA-GAGCTTCCCGAT-TAAAG
1 GCTCTCTATGAGCTTCCCGATAT-ATG
* * *
14989598 GTTCTTTCATGAGCTTCCTGAT-TAATG
1 GCTCTCT-ATGAGCTTCCCGATAT-ATG
** *
14989625 GCTCTC-CGGAGCTACCCGATAT-TG
1 GCTCTCTATGAGCTTCCCGATATATG
* * *
14989649 GCTCGC-ATGAACTTCCTGAT-TATG
1 GCTCTCTATGAGCTTCCCGATATATG
* * *
14989673 CCTCT-TATGAGCTTCCCGTTACATG
1 GCTCTCTATGAGCTTCCCGATATATG
* *
14989698 GCTCAC-ATGAGCTTCCCGTTATATG
1 GCTCTCTATGAGCTTCCCGATATATG
14989723 GCTC
1 GCTC
14989727 GAAAGAGTTT
Statistics
Matches: 136, Mismatches: 31, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
23 1 0.01
24 49 0.36
25 65 0.48
26 2 0.01
27 19 0.14
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.34
Consensus pattern (26 bp):
GCTCTCTATGAGCTTCCCGATATATG
Found at i:14989738 original size:25 final size:25
Alignment explanation
Indices: 14989681--14989739 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
14989671 TGCCTCTTAT
*
14989681 GAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTACATGGCTCACAA
*
14989706 GAGCTTCCCGTTATATGGCTCGA-AA
1 GAGCTTCCCGTTACATGGCTC-ACAA
*
14989731 GAGTTTCCC
1 GAGCTTCCC
14989740 ATTTATGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 29 0.97
26 1 0.03
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (25 bp):
GAGCTTCCCGTTACATGGCTCACAA
Found at i:14996594 original size:30 final size:30
Alignment explanation
Indices: 14996560--14996622 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14996550 ACTTAACAAT
14996560 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
14996590 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
14996620 CAA
1 CAA
14996623 TAAATGAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:14996671 original size:14 final size:14
Alignment explanation
Indices: 14996652--14996682 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14996642 ATCATAACAA
14996652 TAACAACAAAATAG
1 TAACAACAAAATAG
*
14996666 TAACAACATAATAG
1 TAACAACAAAATAG
14996680 TAA
1 TAA
14996683 AATGATAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:15000654 original size:13 final size:13
Alignment explanation
Indices: 15000636--15000660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15000626 CCAAGACTCA
15000636 ATTTTTATTTTTT
1 ATTTTTATTTTTT
15000649 ATTTTTATTTTT
1 ATTTTTATTTTT
15000661 GAGAGGGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:15006781 original size:19 final size:19
Alignment explanation
Indices: 15006759--15006797 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15006749 ATTTTTGGAA
*
15006759 TTTTACAATTTTTTTAAAT
1 TTTTACAATATTTTTAAAT
**
15006778 TTTTTGAATATTTTTAAAT
1 TTTTACAATATTTTTAAAT
15006797 T
1 T
15006798 ATTTTTTGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTACAATATTTTTAAAT
Found at i:15010195 original size:3 final size:3
Alignment explanation
Indices: 15010187--15010221 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15010177 AAATTAGTTA
15010187 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15010222 GAAAAGAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15016108 original size:12 final size:11
Alignment explanation
Indices: 15016081--15016131 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
15016071 AGGTAGGCCA
15016081 CTTTTTTTGCG
1 CTTTTTTTGCG
*
15016092 C-TTTTTTGCTT
1 CTTTTTTTGC-G
15016103 CTTTTTTTGCAG
1 CTTTTTTTGC-G
*
15016115 TTTTTTTTGCG
1 CTTTTTTTGCG
*
15016126 GTTTTT
1 CTTTTT
15016132 ACTTCTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 8 0.24
11 8 0.24
12 17 0.52
ACGTcount: A:0.02, C:0.14, G:0.16, T:0.69
Consensus pattern (11 bp):
CTTTTTTTGCG
Found at i:15016152 original size:33 final size:34
Alignment explanation
Indices: 15016082--15016154 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
15016072 GGTAGGCCAC
* * *
15016082 TTTTTTTGCGCTTTTTTGCTTCTTTTTTTGCAGT
1 TTTTTTTGCGCGTTTTTACTTCTTTTTTTACAGT
15016116 TTTTTTTGCG-GTTTTTACTTCTTTTTTTACTA-T
1 TTTTTTTGCGCGTTTTTACTTCTTTTTTTAC-AGT
15016149 TTTTTT
1 TTTTTT
15016155 AAAAGAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.05, C:0.12, G:0.11, T:0.71
Consensus pattern (34 bp):
TTTTTTTGCGCGTTTTTACTTCTTTTTTTACAGT
Found at i:15017237 original size:13 final size:13
Alignment explanation
Indices: 15017221--15017245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15017211 TGTTGTGGAA
15017221 AAGTGCTTTTGAG
1 AAGTGCTTTTGAG
15017234 AAGTGCTTTTGA
1 AAGTGCTTTTGA
15017246 AATGTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
AAGTGCTTTTGAG
Found at i:15021019 original size:13 final size:13
Alignment explanation
Indices: 15021001--15021037 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
15020991 CTTGCAAATC
15021001 TCAAACTTCAAGA
1 TCAAACTTCAAGA
15021014 TCAAACTTCAAGA
1 TCAAACTTCAAGA
15021027 T-AATACTTCAA
1 TCAA-ACTTCAA
15021038 TTTAGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 2 0.09
13 21 0.91
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (13 bp):
TCAAACTTCAAGA
Found at i:15021525 original size:5 final size:6
Alignment explanation
Indices: 15021508--15021532 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15021498 AGAAACAATC
15021508 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
15021533 CATAGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:15021803 original size:12 final size:13
Alignment explanation
Indices: 15021776--15021824 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
15021766 AAGAAAACAG
*
15021776 ATAA-AAATAATT
1 ATAACAAATAATA
15021788 ATAACAAATAA-A
1 ATAACAAATAATA
15021800 ATAACAAATAATA
1 ATAACAAATAATA
*
15021813 ATGAAAAAATAA
1 AT-AACAAATAA
15021825 GTTAAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 15 0.47
13 9 0.28
14 8 0.25
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (13 bp):
ATAACAAATAATA
Found at i:15026113 original size:21 final size:21
Alignment explanation
Indices: 15026087--15026127 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15026077 TGCCTAAAAT
*
15026087 ATGAATTGGATTGAATTGAAC
1 ATGAATTGGATTAAATTGAAC
*
15026108 ATGAATTGTATTAAATTGAA
1 ATGAATTGGATTAAATTGAA
15026128 TTAAATTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (21 bp):
ATGAATTGGATTAAATTGAAC
Found at i:15027376 original size:101 final size:102
Alignment explanation
Indices: 15027254--15027438 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
15027244 AAAGTGATGG
* *
15027254 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAATGGTCACATGTGTAGT
*
15027317 ACTATGTGCAGGCTACTATGCGTACTGGATAGTTTCGA
65 ACTATATGCAGGCTACTATGCGTACTGGATAGTTTCGA
* * *
15027355 TCACGTGTGTAGTACTATGTGCAGGCTAGTACGTGTATCGAATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
15027420 CTATATGCAGGCTACTATG
66 CTATATGCAGGCTACTATG
15027439 TGAACCGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 6 0.08
101 37 0.49
102 33 0.43
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
CTATATGCAGGCTACTATGCGTACTGGATAGTTTCGA
Found at i:15027415 original size:51 final size:50
Alignment explanation
Indices: 15027250--15027440 Score: 217
Period size: 51 Copynumber: 3.8 Consensus size: 50
15027240 AGTGAAAGTG
* *
15027250 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTA-CGGAATGGT
* * *
15027301 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGG-ATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTAC-GGAATGGT
* * * * *
15027350 TTCGATCACGTGTGTAGTACTATGTGCAGGCTAGTACGTGTATC-GAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTA-CGGAATGGT
*
15027401 AATGGTCACATGTGTAGTACTATATGCAGGCTACTATGTG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
15027441 AACCGAACAT
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
49 4 0.03
50 39 0.34
51 70 0.61
52 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACGGAATGGT
Found at i:15027498 original size:45 final size:45
Alignment explanation
Indices: 15027442--15027536 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
15027432 TACTATGTGA
* * *
15027442 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
* *
15027487 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
15027532 ACCGA
1 ACCGA
15027537 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
Found at i:15029925 original size:24 final size:24
Alignment explanation
Indices: 15029891--15029945 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
15029881 TTTCTGATAT
* * *
15029891 ATGGCTATTCATAGCTTCCCATTA
1 ATGGCTCTTCAGAGCTACCCATTA
*
15029915 ATGGCTCTTCAGAGCTACCCGTTA
1 ATGGCTCTTCAGAGCTACCCATTA
*
15029939 TTGGCTC
1 ATGGCTC
15029946 GCATGAGCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (24 bp):
ATGGCTCTTCAGAGCTACCCATTA
Found at i:15037179 original size:21 final size:21
Alignment explanation
Indices: 15037138--15037182 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
15037128 TTTTGCCTAA
**
15037138 AATATGAATTGGATTGGATTG
1 AATATGAATTGGATTAAATTG
*
15037159 AATATGAATTGTATTAAATTG
1 AATATGAATTGGATTAAATTG
15037180 AAT
1 AAT
15037183 TAAATTTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (21 bp):
AATATGAATTGGATTAAATTG
Found at i:15044957 original size:57 final size:57
Alignment explanation
Indices: 15044790--15045039 Score: 301
Period size: 57 Copynumber: 4.4 Consensus size: 57
15044780 TTTCTGTTTG
* * *
15044790 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTG
1 CATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
15044847 CATACTGTCTTAAATTGAA-TCAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
1 CATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
15044903 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTTAGTGTATCAAATTGAGCATTTT
1 CATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * * * * *
15044960 CATGCGGTCTTAAATTAAATT-AAGCTGCT-ATTTAATTTTTCAAATTGAGTATTATT
1 CATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
* *
15045016 -ATGCTGTCCTAAATTAAATTAAAG
1 CATGCTGTCATAAATTGAATTAAAG
15045040 TGTTGCTTCA
Statistics
Matches: 166, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
55 37 0.22
56 61 0.37
57 68 0.41
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (57 bp):
CATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:15044988 original size:113 final size:113
Alignment explanation
Indices: 15044790--15045040 Score: 344
Period size: 113 Copynumber: 2.2 Consensus size: 113
15044780 TTTCTGTTTG
* * * *
15044790 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTGCATACTGT
1 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTGAGTGTATCAAATTGAGCATTTGCATACGGT
* * *
15044855 CTTAAATTGAATCAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
66 CTTAAATTAAATCAAGCTGCT-ATTTAATGTTTCAAATTGAGCATTATT
* * *
15044903 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTTAGTGTATCAAATTGAGCATTTTCATGCGGT
1 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTGAGTGTATCAAATTGAGCATTTGCATACGGT
* * *
15044968 CTTAAATTAAATTAAGCTGCTATTTAATTTTTCAAATTGAGTATTATT
66 CTTAAATTAAATCAAGCTGCTATTTAATGTTTCAAATTGAGCATTATT
* *
15045016 -ATGCTGTCCTAAATTAAATTAAAGT
1 CATGCTGTCATAAATTGAATTAAAGT
15045041 GTTGCTTCAG
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
112 43 0.35
113 79 0.65
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (113 bp):
CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTGAGTGTATCAAATTGAGCATTTGCATACGGT
CTTAAATTAAATCAAGCTGCTATTTAATGTTTCAAATTGAGCATTATT
Found at i:15045073 original size:56 final size:56
Alignment explanation
Indices: 15044791--15045074 Score: 279
Period size: 56 Copynumber: 5.1 Consensus size: 56
15044781 TTCTGTTTGC
* * *
15044791 ATGCTGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTGC
1 ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTT-T
* * *
15044848 ATACTGTCTTAAATTGAA-TCAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
1 ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
15044903 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTTAGTGTATCAAATTGAGCATTTT
1 -ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * * * * *
15044960 CATGCGGTCTTAAATTAAATT-AAGCTGCT-ATTTAATTTTTCAAATTGAGTATTATT
1 -ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
* * * * * * * *
15045016 ATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCAGTGTCTCAAAGTAAGCATTATT
1 ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
15045072 ATG
1 ATG
15045075 TTATTGAAAA
Statistics
Matches: 189, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
55 40 0.21
56 82 0.43
57 67 0.35
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (56 bp):
ATGCTGTCATAAATTGAATTAAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:15045966 original size:9 final size:9
Alignment explanation
Indices: 15045952--15045993 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
15045942 CTTTTGAGAA
15045952 GTAATTCGG
1 GTAATTCGG
15045961 GTAATTCGG
1 GTAATTCGG
*
15045970 TTAATTCGG
1 GTAATTCGG
15045979 GTAATTCGG
1 GTAATTCGG
*
15045988 TTAATT
1 GTAATT
15045994 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (9 bp):
GTAATTCGG
Found at i:15045976 original size:18 final size:18
Alignment explanation
Indices: 15045953--15045993 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
15045943 TTTTGAGAAG
15045953 TAATTCGGGTAATTCGGT
1 TAATTCGGGTAATTCGGT
15045971 TAATTCGGGTAATTCGGT
1 TAATTCGGGTAATTCGGT
15045989 TAATT
1 TAATT
15045994 TTTAACCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (18 bp):
TAATTCGGGTAATTCGGT
Found at i:15048935 original size:15 final size:16
Alignment explanation
Indices: 15048915--15048947 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
15048905 AGGCTCTTAG
15048915 TAAACAAATA-AAAAA
1 TAAACAAATAGAAAAA
15048930 TAAACAAATAGAAAAA
1 TAAACAAATAGAAAAA
15048946 TA
1 TA
15048948 GGGTCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (16 bp):
TAAACAAATAGAAAAA
Found at i:15050284 original size:20 final size:20
Alignment explanation
Indices: 15050261--15050306 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
15050251 ATGTACATAT
*
15050261 ATATATTATACTTTCTATAC
1 ATATATTATAATTTCTATAC
* *
15050281 ATATTTTATAATTTCTATAT
1 ATATATTATAATTTCTATAC
15050301 ATATAT
1 ATATAT
15050307 ATATGCAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (20 bp):
ATATATTATAATTTCTATAC
Found at i:15056772 original size:25 final size:25
Alignment explanation
Indices: 15056738--15056790 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
15056728 AACCCGAAAA
*
15056738 GGGCGGCTCAAATATTGATCAGAAT
1 GGGCAGCTCAAATATTGATCAGAAT
* *
15056763 GGGCAGCTCAAATGTTGATTAGAAT
1 GGGCAGCTCAAATATTGATCAGAAT
15056788 GGG
1 GGG
15056791 GCATGCTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (25 bp):
GGGCAGCTCAAATATTGATCAGAAT
Found at i:15058030 original size:45 final size:45
Alignment explanation
Indices: 15057893--15058030 Score: 117
Period size: 45 Copynumber: 3.1 Consensus size: 45
15057883 ACAGATCAGT
* * * *
15057893 GAAGATAGCAGATCTTGCCTTCCTACATCGACAG-CGAAGCAGCTC
1 GAAGATAGCAGATCTTGCCTTCCTACATTGATAGTGGAA-CAGATC
* * * * *
15057938 GAA-A-A-CAAAGCCTTGCCTTCCT-CAGTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGA-TCTTGCCTTCCTACA-TTGATAGTGGAACAGATC
*
15057980 AAAGATAGCAGATCTTGCCTTCCTACATTGATAGTGGAACAGATC
1 GAAGATAGCAGATCTTGCCTTCCTACATTGATAGTGGAACAGATC
15058025 GAAGAT
1 GAAGAT
15058031 GACAGATTTT
Statistics
Matches: 70, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
42 13 0.19
43 17 0.24
44 16 0.23
45 24 0.34
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGCCTTCCTACATTGATAGTGGAACAGATC
Found at i:15058264 original size:44 final size:43
Alignment explanation
Indices: 15058216--15058456 Score: 183
Period size: 44 Copynumber: 5.6 Consensus size: 43
15058206 CCGATAATCC
*
15058216 TATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC-TAGATCT
* * ** *
15058260 TATCTCTCTGAAGTTGCAG-AGAGCAGATC-GCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCTAGATCT
* * *
15058300 TATCTCCCTGAAGTTGCAGTGGAGCAGACCAAATAAGCAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATC-AA-AACCTAGATCT
* ** *
15058344 TATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGC-AAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TCAA-A-ACCTAGATCT
* * *
15058389 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC--TAGATCT
*
15058433 TATCACCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
15058457 TGGATTAAAG
Statistics
Matches: 161, Mismatches: 22, Indels: 28
0.76 0.10 0.13
Matches are distributed among these distances:
40 21 0.13
41 11 0.07
42 4 0.02
43 12 0.07
44 81 0.50
45 29 0.18
46 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCTAGATCT
Found at i:15058357 original size:84 final size:87
Alignment explanation
Indices: 15058211--15058416 Score: 228
Period size: 84 Copynumber: 2.4 Consensus size: 87
15058201 TAAAGCCGAT
* * * *
15058211 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTAGATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAACCTAAGATCTTATCTCTCTGAAGTTG
*
15058276 CAGAGA-GCAGA-TCG-CAT-CT
66 CAGAGAGGCAGACT-GACATGCA
* *
15058295 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAATAAGC-AAG-TCTTATC-CTCCTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACC-AA-AACCTAAGATCTTATCTCT-CTGAAG
* *
15058357 TTGCAGTGAGGCAGACTGAAGATGGCA
63 TTGCAGAGAGGCAGACTG-ACAT-GCA
15058384 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
15058417 TTAAAGCCGA
Statistics
Matches: 103, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
83 2 0.02
84 52 0.50
85 10 0.10
86 4 0.04
87 2 0.02
89 33 0.32
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (87 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAACCTAAGATCTTATCTCTCTGAAGTTG
CAGAGAGGCAGACTGACATGCA
Found at i:15058679 original size:15 final size:16
Alignment explanation
Indices: 15058659--15058691 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
15058649 AGGCTCTTAG
15058659 TAAACAAATA-AAAAA
1 TAAACAAATAGAAAAA
15058674 TAAACAAATAGAAAAA
1 TAAACAAATAGAAAAA
15058690 TA
1 TA
15058692 GAGTCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (16 bp):
TAAACAAATAGAAAAA
Found at i:15059882 original size:18 final size:18
Alignment explanation
Indices: 15059861--15059912 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
15059851 TATATGTACA
*
15059861 TATATATATTATACTTTC
1 TATATATATTATAATTTC
*
15059879 TATACATATTTTATAATTTC
1 TAT--ATATATTATAATTTC
15059899 TATATATATGTATA
1 TATATATAT-TATA
15059913 TGCAATCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 8 0.29
19 4 0.14
20 16 0.57
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (18 bp):
TATATATATTATAATTTC
Found at i:15059892 original size:20 final size:20
Alignment explanation
Indices: 15059864--15059907 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
15059854 ATGTACATAT
*
15059864 ATATATTATACTTTCTATAC
1 ATATATTATAATTTCTATAC
* *
15059884 ATATTTTATAATTTCTATAT
1 ATATATTATAATTTCTATAC
15059904 ATAT
1 ATAT
15059908 GTATATGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATATTATAATTTCTATAC
Found at i:15060052 original size:22 final size:22
Alignment explanation
Indices: 15060024--15060072 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
15060014 CGATTAGATT
15060024 TTTCAGTGCATTATTCTCGAAC
1 TTTCAGTGCATTATTCTCGAAC
* *
15060046 TTTCAGTGCATTATTCTTGAGC
1 TTTCAGTGCATTATTCTCGAAC
15060068 TTTCA
1 TTTCA
15060073 AATTTCTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (22 bp):
TTTCAGTGCATTATTCTCGAAC
Found at i:15061295 original size:21 final size:21
Alignment explanation
Indices: 15061247--15061295 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
15061237 TGATACATAA
*
15061247 GTGCCTAAAACGACACACAAG
1 GTGCCTGAAACGACACACAAG
* *
15061268 GTGCCTGATACGACACACGAG
1 GTGCCTGAAACGACACACAAG
15061289 GTGCCTG
1 GTGCCTG
15061296 GTCGGCAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.27, T:0.14
Consensus pattern (21 bp):
GTGCCTGAAACGACACACAAG
Found at i:15061436 original size:25 final size:26
Alignment explanation
Indices: 15061388--15061437 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
15061378 GGTCACCAAA
*
15061388 TTCACATTTCAATTCAATTCCACTTT
1 TTCACATTTCAATACAATTCCACTTT
15061414 TTCAC-TTTCAATCACAATT-CACTT
1 TTCACATTTCAAT-ACAATTCCACTT
15061438 CAAAATTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (26 bp):
TTCACATTTCAATACAATTCCACTTT
Found at i:15062492 original size:3 final size:3
Alignment explanation
Indices: 15062484--15062527 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
15062474 AATTTATTCC
* *
15062484 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATTA ATA ATT ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA A
15062528 CTATAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:15063462 original size:43 final size:43
Alignment explanation
Indices: 15063414--15063499 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
15063404 TTTTATCCTA
* *
15063414 GAAAAAA-ATTTTAAAAATAGGAGAAGATAATCTTGGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTT
*
15063456 GAAAAAAGAATTTAAAAAGATGAGAAGATAATCTTGGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTT
15063499 G
1 G
15063500 GATTTACCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 7 0.17
43 33 0.82
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.29
Consensus pattern (43 bp):
GAAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTT
Found at i:15064865 original size:19 final size:20
Alignment explanation
Indices: 15064843--15064881 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15064833 TCATTAATAA
15064843 ATTTATT-AATTTTTAACCG
1 ATTTATTGAATTTTTAACCG
*
15064862 ATTTATTGATTTTTTAACCG
1 ATTTATTGAATTTTTAACCG
15064882 TAATCTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (20 bp):
ATTTATTGAATTTTTAACCG
Found at i:15067352 original size:12 final size:12
Alignment explanation
Indices: 15067337--15067365 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
15067327 AAATAATTTT
15067337 TAAAAATTTTAA
1 TAAAAATTTTAA
15067349 T-AAAATTTTAA
1 TAAAAATTTTAA
15067360 TAAAAA
1 TAAAAA
15067366 AAGGAGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAAAATTTTAA
Found at i:15067355 original size:11 final size:11
Alignment explanation
Indices: 15067339--15067364 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15067329 ATAATTTTTA
15067339 AAAATTTTAAT
1 AAAATTTTAAT
15067350 AAAATTTTAAT
1 AAAATTTTAAT
15067361 AAAA
1 AAAA
15067365 AAAGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAATTTTAAT
Found at i:15077807 original size:580 final size:578
Alignment explanation
Indices: 15076350--15078049 Score: 2747
Period size: 577 Copynumber: 3.0 Consensus size: 578
15076340 ATCATATAAG
* *
15076350 GGAGACATGTTGGAAGCTACACAAAAAATTGGTGGATTGAAAGTCAAGTAGATCAACCCAAGATA
1 GGAGACATGTTGGAAGCTACACAAAAAATTGGTGGATTGGAAGTCAAATAGATCAACCCAAGATA
*
15076415 GCAATGCAAACTCAACCAATGTCACGGGGGAACGATAGTGCACAACTGAATCCAACCTCTTCACC
66 GCAATGCAAACTCAACCAATGTCACGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCACC
15076480 AAGGAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACACTT-TACCGCTA
131 AAGGAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACA-TTCTACCGCTA
*
15076544 CACCAGCCATAAGTTTACATGTTAAGTTAAGTAAATTACAATAAAAATAGTTGATCGTTGACTCA
195 CACCAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAATAGTTGATCGTTGACTCA
* *
15076609 TGAACATTGGATCATATGACAGGAAATGAGACACTTTTCGTTGACTATTAACTGTGTCACTTTAA
260 TGAACATTGGATCATATGACAGGAGATGAGACACTTTTCGTTGACTATCAACTGTGTCACTTTAA
* * * *
15076674 TCTTAAGGTTAAGATTACTAATGCACTTTATCTAAAGTGATGAGACCAGATCAGTTCAAACATCA
325 TCTCAAGGTTAAGATTGCTAATGCACTTTATCTAAAGTGATGAGACCAGATCAATTCAAATATCA
*
15076739 CCTGGAATCATTCTTAAATCTGTATTTTATGTTCCTAATCTTGATTGTAATATGATTTCCATCTG
390 CCTGGAATCATTCTTAAATCTGTGTTTTATGTTCCTAAT-TTGATTGTAATATGATTTCCATCTG
* * * *
15076804 TAAATCAACTCATGATAACCATTGTTTAACAAAATTCTTTCCAAATGTGTGTGTTTTTCTGGAAT
454 TAAATTAACTCGTGATAACCATTGTTTAACAACATTCTTTCCAAATGTGTGTGTTTTTCAGGAAT
*
15076869 TGGGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGG-TTACA-CCAAAAAATT
519 TGGGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGGATTATACCCAAAAAATT
* * *
15076927 GGAGACATGTTGGAAGCTACACAAAAAATTGGTAGATTGGAAGTCAAACAGATCAACCAAAGATA
1 GGAGACATGTTGGAAGCTACACAAAAAATTGGTGGATTGGAAGTCAAATAGATCAACCCAAGATA
* * *
15076992 GCAATGCAAACTCAACCAATATCATGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCACT
66 GCAATGCAAACTCAACCAATGTCACGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCACC
* * *
15077057 AAGGAAAAACTAGATATGCTAAAATTGTTTCTGAACAACACTATAACACAACACTCTACCGCTAC
131 AAGGAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACATTCTACCGCTAC
* *
15077122 ACCAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAATAATTGATCGTTGACTCAC
196 ACCAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAATAGTTGATCGTTGACTCAT
*
15077187 GAACATTGGATCATATGACAGGAGATGTGACACTTTTCGTTGACTATCAACTGTGTCACTTTAAT
261 GAACATTGGATCATATGACAGGAGATGAGACACTTTTCGTTGACTATCAACTGTGTCACTTTAAT
*
15077252 CTCAAGGTTAAGATTGCTAATGCACTTTATCTAAAGTGATAAGACCAGATCAATTCAAATATCAC
326 CTCAAGGTTAAGATTGCTAATGCACTTTATCTAAAGTGATGAGACCAGATCAATTCAAATATCAC
15077317 CTGGAATCATTCTTAAATCTGTGTTTTATGTTCCTAATTTTGATTGTAATATGATTTCCATCTGT
391 CTGGAATCATTCTTAAATCTGTGTTTTATGTTCCTAA-TTTGATTGTAATATGATTTCCATCTGT
* * * *
15077382 AAATTAACTTGTGATAGCCATTTTTTAACAACATTCTTACCAAATGTGTGTGTTTTTCAGGAATT
455 AAATTAACTCGTGATAACCATTGTTTAACAACATTCTTTCCAAATGTGTGTGTTTTTCAGGAATT
15077447 GGGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGGATTATACCCAAAAAATT
520 GGGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGGATTATACCCAAAAAATT
15077506 GGAGACATGTTGGAAGCTACACAAAAAAATTGGTGGATTGGAAGTCAAATAGATCAACCCAAGAT
1 GGAGACATGTTGGAAGCTACAC-AAAAAATTGGTGGATTGGAAGTCAAATAGATCAACCCAAGAT
* * *
15077571 AACAATGCAAACTCAACTAATGTAACGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCAC
65 AGCAATGCAAACTCAACCAATGTCACGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCAC
* *
15077636 CAAGTAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACATTCTACTGCTA
130 CAAGGAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACATTCTACCGCTA
* * *
15077701 CACTAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAACAGTTGATCGTTAACTCA
195 CACCAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAATAGTTGATCGTTGACTCA
* *
15077766 TGAACATTGGATCATATGACAGGAGATGGGACACTTTTCGTTGACTATCAACTGTGTCACTCTAA
260 TGAACATTGGATCATATGACAGGAGATGAGACACTTTTCGTTGACTATCAACTGTGTCACTTTAA
15077831 TCTCAAGGTTAAG--TGCTAATGCACTTTATCTAAAGTGATGAGACCAGATCAATTCAAATATCA
325 TCTCAAGGTTAAGATTGCTAATGCACTTTATCTAAAGTGATGAGACCAGATCAATTCAAATATCA
*
15077894 CCTGGAATCATTCTTAAATCTGTGTTTTATG---C-----------T-CT-T-A-----A--TGT
390 CCTGGAATCATTCTTAAATCTGTGTTTTATGTTCCTAATTTGATTGTAATATGATTTCCATCTGT
15077935 AAATTAACTCGTGATAACCATTGTTTAACAACATTCTTTCCAAATGTGTGTGTTTTTCAGGAATT
455 AAATTAACTCGTGATAACCATTGTTTAACAACATTCTTTCCAAATGTGTGTGTTTTTCAGGAATT
* *
15078000 GGTTTCGAAGAGGAAGATTGTTAGTGTTGAGATGTGTCATGGATTATACC
520 GGGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGGATTATACC
15078050 TCTTCAAGCC
Statistics
Matches: 1056, Mismatches: 62, Indels: 34
0.92 0.05 0.03
Matches are distributed among these distances:
553 112 0.11
555 1 0.00
560 1 0.00
561 1 0.00
562 1 0.00
563 1 0.00
575 1 0.00
576 1 0.00
577 526 0.50
578 85 0.08
579 32 0.03
580 294 0.28
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (578 bp):
GGAGACATGTTGGAAGCTACACAAAAAATTGGTGGATTGGAAGTCAAATAGATCAACCCAAGATA
GCAATGCAAACTCAACCAATGTCACGGGGGAACGATAGTGCACAACTGAATCCAACCCCTTCACC
AAGGAACAACTAGATATGCTAAAATTGTTGCTGAACAACACTATAACACAACATTCTACCGCTAC
ACCAGCCATAAGTTTACATGTTAAGTTAGGTAAATTACAATAAAAATAGTTGATCGTTGACTCAT
GAACATTGGATCATATGACAGGAGATGAGACACTTTTCGTTGACTATCAACTGTGTCACTTTAAT
CTCAAGGTTAAGATTGCTAATGCACTTTATCTAAAGTGATGAGACCAGATCAATTCAAATATCAC
CTGGAATCATTCTTAAATCTGTGTTTTATGTTCCTAATTTGATTGTAATATGATTTCCATCTGTA
AATTAACTCGTGATAACCATTGTTTAACAACATTCTTTCCAAATGTGTGTGTTTTTCAGGAATTG
GGTTCGAAGAGGAAGATTGGTAGTGTTGAGATGTGTCATGGATTATACCCAAAAAATT
Found at i:15078779 original size:20 final size:18
Alignment explanation
Indices: 15078732--15078838 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 18
15078722 CAAGATAAAC
*
15078732 ATTAAATTAA-ATTTATT
1 ATTAAATTAATATTTAAT
15078749 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
15078769 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
15078788 ATTAAGATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
15078805 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
15078825 ATTAAATTAGTATT
1 ATTAAATTAATATT
15078839 ATTTTTATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
16 1 0.01
17 18 0.26
18 6 0.09
19 18 0.26
20 26 0.38
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:15078780 original size:11 final size:11
Alignment explanation
Indices: 15078764--15078839 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
15078754 GATAATCACT
15078764 TTAATATTAAA
1 TTAATATTAAA
15078775 TTAATA--AAA
1 TTAATATTAAA
*
15078784 -TACTATTAAGA
1 TTAATATTAA-A
*
15078795 TAAATATTAAA
1 TTAATATTAAA
15078806 TTAA-ATTTAATA
1 TTAATA-TTAA-A
15078818 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
15078831 TTAGTATTA
1 TTAATATTA
15078840 TTTTTATAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 3 0.06
11 20 0.39
12 11 0.22
13 5 0.10
14 4 0.08
15 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:15078817 original size:17 final size:17
Alignment explanation
Indices: 15078732--15078822 Score: 57
Period size: 17 Copynumber: 5.4 Consensus size: 17
15078722 CAAGATAAAC
*
15078732 ATTAAATTAAATTTATT
1 ATTAAATTAAATTTAAT
15078749 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAA--A-TTTAAT
**
15078769 ATTAAATT-AATAAAAT
1 ATTAAATTAAATTTAAT
* *
15078785 ACT--ATTAAGA-TAAAT
1 ATTAAATTAA-ATTTAAT
15078800 ATTAAATTAAATTTAAT
1 ATTAAATTAAATTTAAT
15078817 ATTAAA
1 ATTAAA
15078823 CTATTAAATT
Statistics
Matches: 57, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
14 3 0.05
15 7 0.12
16 8 0.14
17 24 0.42
18 1 0.02
19 3 0.05
20 11 0.19
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (17 bp):
ATTAAATTAAATTTAAT
Found at i:15081910 original size:81 final size:81
Alignment explanation
Indices: 15081773--15081937 Score: 276
Period size: 81 Copynumber: 2.0 Consensus size: 81
15081763 TTCACATGAT
* * *
15081773 TTATTCAGTCGTGATAAAGATTATGAATAACATGAGTGACCAAGTCCCTTGCGGGAGATTAACAA
1 TTATTCAATCATGATAAAGATTATGAATAACATGAGTGACCAAATCCCTTGCGGGAGATTAACAA
*
15081838 GTGGATGGGAATGTGA
66 GTGGATGAGAATGTGA
* *
15081854 TTATTCAATCATGATAAAGATTATGAATAACATGAGTGACTAAATCCCTTGGGGGAGATTAACAA
1 TTATTCAATCATGATAAAGATTATGAATAACATGAGTGACCAAATCCCTTGCGGGAGATTAACAA
15081919 GTGGATGAGAATGTGA
66 GTGGATGAGAATGTGA
15081935 TTA
1 TTA
15081938 ACGGAGGATT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (81 bp):
TTATTCAATCATGATAAAGATTATGAATAACATGAGTGACCAAATCCCTTGCGGGAGATTAACAA
GTGGATGAGAATGTGA
Found at i:15091985 original size:18 final size:17
Alignment explanation
Indices: 15091961--15092013 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
15091951 TATTGATTTA
*
15091961 TTTTATTTGTTTACTTT
1 TTTTATTTATTTACTTT
15091978 TCTTTATTTATTT-CTTT
1 T-TTTATTTATTTACTTT
*
15091995 TTGGTATTTATTTACTTT
1 TT-TTATTTATTTACTTT
15092013 T
1 T
15092014 ATCTCTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 1 0.03
17 15 0.48
18 15 0.48
ACGTcount: A:0.13, C:0.08, G:0.06, T:0.74
Consensus pattern (17 bp):
TTTTATTTATTTACTTT
Found at i:15096132 original size:76 final size:76
Alignment explanation
Indices: 15095994--15096151 Score: 244
Period size: 76 Copynumber: 2.1 Consensus size: 76
15095984 GTTGTGTGAG
* * * *
15095994 ACACACGGCCTGGCGACATGGTTGTGTGTCATTTGATGAATTATTTAGGGTACAAGTCAGTGAGT
1 ACACACGGCCTGACAACACGGTTGTGTGTCATTTGATGAATTATTTAAGGTACAAGTCAGTGAGT
15096059 TACACGGCCTA
66 TACACGGCCTA
* * *
15096070 ACACACGGCCTGACAACACGGTTGTGTGTCATTTGATGAATTATTTAAGGTGCAATTTAGTGAGT
1 ACACACGGCCTGACAACACGGTTGTGTGTCATTTGATGAATTATTTAAGGTACAAGTCAGTGAGT
15096135 TACACGGCCTA
66 TACACGGCCTA
*
15096146 ATACAC
1 ACACAC
15096152 AAGTGTGTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (76 bp):
ACACACGGCCTGACAACACGGTTGTGTGTCATTTGATGAATTATTTAAGGTACAAGTCAGTGAGT
TACACGGCCTA
Found at i:15118485 original size:65 final size:65
Alignment explanation
Indices: 15118346--15118475 Score: 239
Period size: 65 Copynumber: 2.0 Consensus size: 65
15118336 CAATAGTTAT
15118346 CAAATTCAAATAACAACCATTCACTCATTCATATAAGTCAAATTCATATATATAAAGCACATAAC
1 CAAATTCAAATAACAACCATTCACTCATTCATATAAGTCAAATTCATATATATAAAGCACATAAC
15118411 CAAATTCAAATAACAACCATTCACTCA-TCATATAAGTC-AATTCATA-ATATAAAGCACATAAC
1 CAAATTCAAATAACAACCATTCACTCATTCATATAAGTCAAATTCATATATATAAAGCACATAAC
15118473 CAA
1 CAA
15118476 TTAATTCAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
62 19 0.29
63 8 0.12
64 11 0.17
65 27 0.42
ACGTcount: A:0.48, C:0.22, G:0.03, T:0.26
Consensus pattern (65 bp):
CAAATTCAAATAACAACCATTCACTCATTCATATAAGTCAAATTCATATATATAAAGCACATAAC
Found at i:15119743 original size:45 final size:43
Alignment explanation
Indices: 15119693--15119797 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
15119683 TATCCTAGAT
* **
15119693 ATGGTCTTACATGTTATAATCATATACGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGAAAT-ATCATAT-CGATGCCAATGTCTCAGAC
*
15119738 ATGGTCTTACACGAAATCTCATATCGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGAAATATCATATCGATGCCAATGTCTCAGAC
*
15119781 ATGGTCTTACAGGAAAT
1 ATGGTCTTACACGAAAT
15119798 CATACCTCGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 35 0.64
44 6 0.11
45 14 0.25
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACGAAATATCATATCGATGCCAATGTCTCAGAC
Found at i:15119772 original size:43 final size:44
Alignment explanation
Indices: 15119712--15119798 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 44
15119702 CATGTTATAA
15119712 TCATATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATC
1 TCATATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATC
*
15119756 TCATAT-CGATGCCAATGTCTCAGACATGGTCTTACAGGAAATC
1 TCATATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATC
15119799 ATACCTCGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 36 0.86
44 6 0.14
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
TCATATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATC
Found at i:15122810 original size:26 final size:26
Alignment explanation
Indices: 15122770--15122860 Score: 84
Period size: 26 Copynumber: 3.6 Consensus size: 26
15122760 CTTATGAACG
15122770 TCCCG-TTATATGGCTCTTCGTGAGCT
1 TCCCGATTA-ATGGCTCTTCGTGAGCT
*
15122796 TCCCGATTCAA-GGCTCTTTGTGAGCT
1 TCCCGATT-AATGGCTCTTCGTGAGCT
** * *
15122822 TCATGATTAATGGCTCTCCG-AAGCT
1 TCCCGATTAATGGCTCTTCGTGAGCT
15122847 TCCCGA-T-ATGGCTC
1 TCCCGATTAATGGCTC
15122861 GCTTGAACTT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
23 7 0.13
24 1 0.02
25 10 0.19
26 32 0.59
27 3 0.06
28 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.34
Consensus pattern (26 bp):
TCCCGATTAATGGCTCTTCGTGAGCT
Found at i:15123008 original size:25 final size:25
Alignment explanation
Indices: 15122934--15123024 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 25
15122924 TCACATAATT
* **
15122934 TTCCTGATA-ATGGCTCTTATGAGC
1 TTCCTGTTATATGGCTCACATGAGC
* ** * * *
15122958 TTTCTGTTATACAGCCCAGATTAGC
1 TTCCTGTTATATGGCTCACATGAGC
15122983 TTCCTGTTATATGGCTCACATGAGC
1 TTCCTGTTATATGGCTCACATGAGC
15123008 TTCCTGTTATATGGCTC
1 TTCCTGTTATATGGCTC
15123025 GAGAGAAGGC
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 7 0.13
25 45 0.87
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
TTCCTGTTATATGGCTCACATGAGC
Found at i:15127241 original size:35 final size:35
Alignment explanation
Indices: 15127164--15127247 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 35
15127154 CTTATTATAA
* *
15127164 CTAAATGTATATATGTATTTATCACTTGCACATAT
1 CTAAATGCATATATGTACTTATCACTTGCACATAT
* * *
15127199 CTAAATGCATATATGTGCTTATCGCTTGCACTTCAT
1 CTAAATGCATATATGTACTTATCACTTGCACAT-AT
*
15127235 C-GAATGCATATAT
1 CTAAATGCATATAT
15127248 ATATTATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 39 0.93
36 3 0.07
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (35 bp):
CTAAATGCATATATGTACTTATCACTTGCACATAT
Found at i:15127590 original size:41 final size:41
Alignment explanation
Indices: 15127530--15127762 Score: 331
Period size: 41 Copynumber: 5.7 Consensus size: 41
15127520 TTAATATAAA
* * * * *
15127530 CAGATTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTAATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * *
15127572 CAGATCACCAGCATTTAGCCTGCTAGGCTTATAGCCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15127613 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
15127654 CAGATCACCAGCACTTAGCCTGCTAGGCTTATAGCCTGGTT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15127695 CAAATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15127736 TAGATCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
15127763 TTTTAAAACC
Statistics
Matches: 171, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 167 0.98
42 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:15134284 original size:35 final size:35
Alignment explanation
Indices: 15134207--15134290 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 35
15134197 CTTATTATAA
* *
15134207 CTAAATGTATATATGTATTTATCACTTGCACATAT
1 CTAAATGCATATATGTACTTATCACTTGCACATAT
* * *
15134242 CTAAATGCATATATGTGCTTATCGCTTGCACTTCAT
1 CTAAATGCATATATGTACTTATCACTTGCACAT-AT
*
15134278 C-GAATGCATATAT
1 CTAAATGCATATAT
15134291 ATATTATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 39 0.93
36 3 0.07
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (35 bp):
CTAAATGCATATATGTACTTATCACTTGCACATAT
Found at i:15134630 original size:41 final size:41
Alignment explanation
Indices: 15134578--15134805 Score: 339
Period size: 41 Copynumber: 5.6 Consensus size: 41
15134568 ATAAACAAAT
* * * *
15134578 TCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
** * * *
15134619 TCACCAACACTTAGCCTGCTAGGCTTATAGCCTAATCCAGT
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
15134660 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
* * *
15134701 TCACCAGCACTTAGCCTGCTAGGCTTATAGCCTGGTTCAAA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
*
15134742 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
15134783 TCACCGGCACTTAGCCTGCTAGG
1 TCACCGGCACTTAGCCTGCTAGG
15134806 TTTTAAAACC
Statistics
Matches: 166, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 166 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
Found at i:15137455 original size:293 final size:293
Alignment explanation
Indices: 15136923--15138021 Score: 1627
Period size: 293 Copynumber: 3.8 Consensus size: 293
15136913 GGCTGTTACA
* * * * *
15136923 CTATCTGCACTTGTTTAGAA-TTTTTTCCTATCTTTTTTCGAACAACATTAGAGTGTTGTTGCAT
1 CTATCTACACTTGTTTAGAAGGTTTTCCCTAT-TCTTTTCGAACAACATCAGAGTGTTGTTGCAT
* * * *
15136987 AATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATTTAAGGCCTTTCTATGAATATT
65 AATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTTT
* *
15137052 GATATTGGGATGTATCAGATTATCCAATCTTCCTTACAGTAGTAATGTTTCACAGATTTGTTAAG
130 GATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAAG
*
15137117 TTCTTGCCCACATCATGGTTTTGAAATTAAAAGTAATCTAGCATCAATTTGTACTTCAATCATAT
195 TTCTTGCCCACATCATGGTTTTGAAATTAAAAGTAATCTAGCATCAATTTGTACTTCAATCATCT
* * *
15137182 ATTATAATAGAATCTGTTTGGCTTTCTTATGTCT
260 ATTATAATAGAATCTGTTTGGCTTACTTGTGTCC
* * * *
15137216 CTATATGCACTTGTTTAGAAGGTTTTTCCCT-TTCTTTTCGAATAGCATCAGAGTGTTGTTGCAT
1 CTATCTACACTTGTTTAGAAGG-TTTTCCCTATTCTTTTCGAACAACATCAGAGTGTTGTTGCAT
* *
15137280 AATTTGTCTTGTCGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTTT
65 AATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTTT
* *
15137345 GATATTGGGATGTATCAGATTATCCAATCTTTCTTATAGTAGTAATGTTTCAAAGATTTATTAAG
130 GATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAAG
*
15137410 TTCTTGCCCACATCATGGTTTTGAAATTAAAAGTTAGT-TAGCATCAATTT-TCACTTCAATCAT
195 TTCTTGCCCACATCATGGTTTTGAAATTAAAAG-TAATCTAGCATCAATTTGT-ACTTCAATCAT
* * *
15137473 CTATTATAATAGAATCTATTTGGCTTGCTTGTATCC
258 CTATTATAATAGAATCTGTTTGGCTTACTTGTGTCC
* * * *
15137509 CTATCTACACTTGTTTAAAAGGTTTT-CC-ATTCTTCTATCGAACAATATTAGAGTTTTGTTGCA
1 CTATCTACACTTGTTTAGAAGGTTTTCCCTATTCTT-T-TCGAACAACATCAGAGTGTTGTTGCA
* * * * * *
15137572 TAATTTGCCTTATTGTCATAGCTTTTTTCCCCTCCCACTTCAATCTAGGGCCTTTCCATGAATGT
64 TAATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTT
* *
15137637 TGATATTGGGATGTATCAGATTATTCAATCTTCCTTATAGTAATAATGTTTCAAAGATTTGTTAA
129 TGATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAA
* * *
15137702 GTTCTTGCCCACATCATGGTTTTGAAATTAAATGTAATCTAGCATCAATTTGCACTTCAATAATC
194 GTTCTTGCCCACATCATGGTTTTGAAATTAAAAGTAATCTAGCATCAATTTGTACTTCAATCATC
*
15137767 TATTATAATAGAATTTGTTTGGCTTACTTGTGTCC
259 TATTATAATAGAATCTGTTTGGCTTACTTGTGTCC
* * * *
15137802 CTATCTACACTTGTTTAGAAGGTTTTCCTCTCTTC-TTTCAAATAGCATCAGAGTGTTGTTGCAT
1 CTATCTACACTTGTTTAGAAGGTTTTCC-CTATTCTTTTCGAACAACATCAGAGTGTTGTTGCAT
* * * *
15137866 AATTTGCCTTGTTTTCATAGCCTTTTTCCCCTTCCACTTCAATCTAGGGCTTTTCCATGAATTTT
65 AATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTTT
15137931 GATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAAG
130 GATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAAG
15137996 TTCTTGCCCACATCATGGTTTTGAAA
195 TTCTTGCCCACATCATGGTTTTGAAA
15138022 ATTGGCGGAC
Statistics
Matches: 726, Mismatches: 68, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
291 7 0.01
292 9 0.01
293 692 0.95
294 6 0.01
295 9 0.01
296 3 0.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.42
Consensus pattern (293 bp):
CTATCTACACTTGTTTAGAAGGTTTTCCCTATTCTTTTCGAACAACATCAGAGTGTTGTTGCATA
ATTTGCCTTGTTGTCACAACCTTTTTCCCCTTCCACTTCAATCTAGGGCCTTTCCATGAATTTTG
ATATTGGGATGTATCAGATTATCCAATCTTCCTTATAGTAGTAATGTTTCAAAGATTTGTTAAGT
TCTTGCCCACATCATGGTTTTGAAATTAAAAGTAATCTAGCATCAATTTGTACTTCAATCATCTA
TTATAATAGAATCTGTTTGGCTTACTTGTGTCC
Found at i:15144550 original size:25 final size:25
Alignment explanation
Indices: 15144522--15144575 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
15144512 CCAACTGGAT
* *
15144522 AGTTTATCAAACAATAAAG-TAAAAG
1 AGTTTACCAAAAAATAAAGCT-AAAG
*
15144547 AGTTTCCCAAAAAATAAAGCTAAAG
1 AGTTTACCAAAAAATAAAGCTAAAG
15144572 AGTT
1 AGTT
15144576 AAAAAGACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.24
Consensus pattern (25 bp):
AGTTTACCAAAAAATAAAGCTAAAG
Found at i:15155253 original size:20 final size:20
Alignment explanation
Indices: 15155228--15155269 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
15155218 TTTATAATTT
*
15155228 TACTTGTAAACTCTTAAAAA
1 TACTTGTAAACTCTAAAAAA
15155248 TACTTGTAAACTCTAAAAAA
1 TACTTGTAAACTCTAAAAAA
15155268 TA
1 TA
15155270 ACTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (20 bp):
TACTTGTAAACTCTAAAAAA
Found at i:15162976 original size:118 final size:118
Alignment explanation
Indices: 15162815--15163047 Score: 430
Period size: 118 Copynumber: 2.0 Consensus size: 118
15162805 TGTTGAGCTA
* *
15162815 GCGAAGAGACCAATCGAACATATACAATTAGGCTCGAGTAATTGCAATTATGTCCAGAAGCATTG
1 GCGAAGAAACCAATCGAACATATACAATTAGGCTCGAGTAATTGCAATTATGTCCAGAAGCATCG
15162880 TTCCGATAATTCACAATTTACTTAATTATGGAGTCAGTCCACAATAAGTAATT
66 TTCCGATAATTCACAATTTACTTAATTATGGAGTCAGTCCACAATAAGTAATT
* *
15162933 GCGAAGAAACCAATCGAACTTATACAATTAGGCTCGAGTAATTGTAATTATGTCCAGAAGCATCG
1 GCGAAGAAACCAATCGAACATATACAATTAGGCTCGAGTAATTGCAATTATGTCCAGAAGCATCG
15162998 TTCCGATAATTCACAATTTACTTAATTATGGAGTCAGTCCACAATAAGTA
66 TTCCGATAATTCACAATTTACTTAATTATGGAGTCAGTCCACAATAAGTA
15163048 CCATGATTGG
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 111 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (118 bp):
GCGAAGAAACCAATCGAACATATACAATTAGGCTCGAGTAATTGCAATTATGTCCAGAAGCATCG
TTCCGATAATTCACAATTTACTTAATTATGGAGTCAGTCCACAATAAGTAATT
Found at i:15164947 original size:31 final size:29
Alignment explanation
Indices: 15164912--15164969 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
15164902 AATAATATTT
*
15164912 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
15164943 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
15164970 GTAGATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:15167700 original size:57 final size:57
Alignment explanation
Indices: 15167631--15167761 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 57
15167621 ATCACTTTAA
* * * *
15167631 TATTAAATTAATATAATA-TTTATC-AAGATAAATATT-ATTAAATTTAATATTAAATCT
1 TATTAAAATAATATAA-AGTTTATCTAAGATAAACATTAATTAAATTAAATATTAAA--G
*
15167688 TATTAAAATAATAGAAAGTTTATCTATAAGATAAACATTAAATTAAATTAAATATTAAAG
1 TATTAAAATAATATAAAGTTTATC--TAAGATAAACATT-AATTAAATTAAATATTAAAG
15167748 TATTAAAATAATAT
1 TATTAAAATAATAT
15167762 TATTTTTGGA
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
56 1 0.02
57 20 0.32
60 24 0.39
62 17 0.27
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (57 bp):
TATTAAAATAATATAAAGTTTATCTAAGATAAACATTAATTAAATTAAATATTAAAG
Found at i:15169398 original size:27 final size:25
Alignment explanation
Indices: 15169365--15169480 Score: 83
Period size: 25 Copynumber: 4.6 Consensus size: 25
15169355 TTTGGTTGTC
15169365 TAGAGCTTCCCGATTAAAGGCTCTT
1 TAGAGCTTCCCGATTAAAGGCTCTT
** *
15169390 TCATGAGCTTCTTGATTAATGGCTCTT
1 T-A-GAGCTTCCCGATTAAAGGCTCTT
* * *
15169417 TAGAGCTACCCGA-TATATGGCTCGCT
1 TAGAGCTTCCCGATTA-AAGGCTC-TT
* * *
15169443 T-GAGCTTCCTGATTAATGGCTCTC
1 TAGAGCTTCCCGATTAAAGGCTCTT
**
15169467 CGGAGCTTCCCGAT
1 TAGAGCTTCCCGAT
15169481 ATTGGCTTGC
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
24 2 0.03
25 43 0.60
26 6 0.08
27 21 0.29
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (25 bp):
TAGAGCTTCCCGATTAAAGGCTCTT
Found at i:15169447 original size:25 final size:25
Alignment explanation
Indices: 15169419--15169509 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
15169409 TGGCTCTTTA
* **
15169419 GAGCTACCCGATATATGGCTCGCTT
1 GAGCTTCCCGATATATGGCTCGCCG
* *
15169444 GAGCTTCCTGAT-TAATGGCTCTCCG
1 GAGCTTCCCGATAT-ATGGCTCGCCG
* **
15169469 GAGCTTCCCGATAT-TGGCTTGCAA
1 GAGCTTCCCGATATATGGCTCGCCG
*
15169493 GAGCTTCCCGTTATATG
1 GAGCTTCCCGATATATG
15169510 CTTGGAAGAG
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
24 20 0.38
25 31 0.60
26 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCGCCG
Found at i:15169461 original size:50 final size:49
Alignment explanation
Indices: 15169393--15169487 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 49
15169383 GGCTCTTTCA
* **
15169393 TGAGCTTCTTGATTAATGGCTCTTTAGAGCTACCCGATATATGGCTCGCT
1 TGAGCTTCCTGATTAATGGCTCTCCAGAGCTACCCGATAT-TGGCTCGCT
* *
15169443 TGAGCTTCCTGATTAATGGCTCTCCGGAGCTTCCCGATATTGGCT
1 TGAGCTTCCTGATTAATGGCTCTCCAGAGCTACCCGATATTGGCT
15169488 TGCAAGAGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 5 0.12
50 35 0.88
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (49 bp):
TGAGCTTCCTGATTAATGGCTCTCCAGAGCTACCCGATATTGGCTCGCT
Found at i:15169537 original size:25 final size:25
Alignment explanation
Indices: 15169469--15169537 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
15169459 TGGCTCTCCG
15169469 GAGCTTCCCGA-TAT-TGGCTTGCAA
1 GAGCTTCCCGATTATAT-GCTTGCAA
*
15169493 GAGCTTCCCG-TTATATGCTTGGAA
1 GAGCTTCCCGATTATATGCTTGCAA
*
15169517 GAGCTTCCAGATTATATGCTT
1 GAGCTTCCCGATTATATGCTT
15169538 ACATGAGCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
24 29 0.73
25 11 0.28
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATTATATGCTTGCAA
Found at i:15169545 original size:25 final size:24
Alignment explanation
Indices: 15169485--15169550 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
15169475 CCCGATATTG
* *
15169485 GCTTGCAAGAGCTTCCCGTTATAT
1 GCTTACAAGAGCTTCCAGTTATAT
**
15169509 GCTTGGAAGAGCTTCCAGATTATAT
1 GCTTACAAGAGCTTCCAG-TTATAT
*
15169534 GCTTACATGAGCATTCC
1 GCTTACAAGAGC-TTCC
15169551 TGAATATGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 16 0.46
25 15 0.43
26 4 0.11
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (24 bp):
GCTTACAAGAGCTTCCAGTTATAT
Found at i:15176088 original size:41 final size:41
Alignment explanation
Indices: 15176030--15176158 Score: 206
Period size: 41 Copynumber: 3.1 Consensus size: 41
15176020 CTTAATTTAA
15176030 CAGATTCACCGGCACTTAGCCTGCTAGGCTTT-TAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGG-TTTATAGCCTGATT
** *
15176072 CAGATCATTGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
15176113 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
15176154 CAGAT
1 CAGAT
15176159 TGCATAAGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 3 0.04
41 73 0.91
42 4 0.05
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
Found at i:15183041 original size:25 final size:25
Alignment explanation
Indices: 15183008--15183078 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
15182998 TGAGCTTTAT
*
15183008 GATTAATGGCT-TTTTGGAGCTACCC
1 GATTAATGGCTCTCTT-GAGCTACCC
*
15183033 GA-TATATGGCTCTCTTGAGCTTCCC
1 GATTA-ATGGCTCTCTTGAGCTACCC
* *
15183058 GATTAATGGCTCACATGAGCT
1 GATTAATGGCTCTCTTGAGCT
15183079 TCTCATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 2 0.05
25 32 0.82
26 5 0.13
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (25 bp):
GATTAATGGCTCTCTTGAGCTACCC
Found at i:15183079 original size:25 final size:26
Alignment explanation
Indices: 15183024--15183127 Score: 110
Period size: 25 Copynumber: 4.2 Consensus size: 26
15183014 TGGCTTTTTG
* * *
15183024 GAGCTACCCGA-TATATGGCTCTCTT
1 GAGCTTCCCGATTATATGGCTCACAT
15183049 GAGCTTCCCGATTA-ATGGCTCACAT
1 GAGCTTCCCGATTATATGGCTCACAT
* * *
15183074 GAGCTTCTC-ATTATAAGGCTCGA-AA
1 GAGCTTCCCGATTATATGGCTC-ACAT
15183099 GAGCTTCCCGATTATAT-GCTCACAT
1 GAGCTTCCCGATTATATGGCTCACAT
15183124 GAGC
1 GAGC
15183128 ATTCTTGAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
24 5 0.08
25 51 0.78
26 9 0.14
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GAGCTTCCCGATTATATGGCTCACAT
Found at i:15193449 original size:21 final size:22
Alignment explanation
Indices: 15193420--15193460 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
15193410 TGTTCAAGGG
*
15193420 TCAATGTTTAGGGTTTAGGGAT
1 TCAATGTTTAGGGATTAGGGAT
*
15193442 TCAA-GTTTTGGGATTAGGG
1 TCAATGTTTAGGGATTAGGG
15193461 TCTCGAGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.22, C:0.05, G:0.34, T:0.39
Consensus pattern (22 bp):
TCAATGTTTAGGGATTAGGGAT
Found at i:15194610 original size:30 final size:30
Alignment explanation
Indices: 15194576--15194635 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
15194566 CTTATATAAA
15194576 GTTTTATGTTCTTAATATGTCAATTAAGGG
1 GTTTTATGTTCTTAATATGTCAATTAAGGG
15194606 GTTTTATGTTCTTAATATGTCAATTAAGGG
1 GTTTTATGTTCTTAATATGTCAATTAAGGG
15194636 AAATAAGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (30 bp):
GTTTTATGTTCTTAATATGTCAATTAAGGG
Found at i:15196855 original size:48 final size:49
Alignment explanation
Indices: 15196797--15196893 Score: 126
Period size: 48 Copynumber: 2.0 Consensus size: 49
15196787 AGTCATTTTC
* * * *
15196797 ATTTTGGAGAAAATCATATTCATTTCCAAATGATTT-T-ATTTCTCCATT
1 ATTTTAGAGAAAACCATAATCATTTCCAAATG-TTTCTCATTTATCCATT
*
15196845 ATTTTAGAGAAAACCTTAATCATTTCCAAATGTTTCTCATTTATCCATT
1 ATTTTAGAGAAAACCATAATCATTTCCAAATGTTTCTCATTTATCCATT
15196894 TTCACCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 3 0.07
48 29 0.69
49 10 0.24
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.44
Consensus pattern (49 bp):
ATTTTAGAGAAAACCATAATCATTTCCAAATGTTTCTCATTTATCCATT
Found at i:15197491 original size:18 final size:21
Alignment explanation
Indices: 15197445--15197486 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15197435 TATTTAGATA
*
15197445 GTTTCAATTTATTATTGGTGT
1 GTTTCAATTTATTAGTGGTGT
15197466 GTTTCAATTTATTAGTGGTGT
1 GTTTCAATTTATTAGTGGTGT
15197487 TCAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.05, G:0.21, T:0.55
Consensus pattern (21 bp):
GTTTCAATTTATTAGTGGTGT
Found at i:15201058 original size:49 final size:49
Alignment explanation
Indices: 15200946--15201090 Score: 128
Period size: 49 Copynumber: 3.0 Consensus size: 49
15200936 ATCGCATTGA
* * * * * * *
15200946 AACTCAGGCCCTCAGTTCACGGTAGTTATACGGTCGCAAGTTGAAGTAT
1 AACTCGGGCCCCCAGTTAACGGTGGTTATGCAGTCACAAGTTGAAGTAT
* * ** * *
15200995 AATTAGGGTTCCCAGTTGACGGTGGTTATGCAGTCACGAGTTGAAGTAT
1 AACTCGGGCCCCCAGTTAACGGTGGTTATGCAGTCACAAGTTGAAGTAT
** * * *
15201044 AACTCGGGCCCCCAGTTAACAATGGTCATGCAGTCACAGGTTCAAGT
1 AACTCGGGCCCCCAGTTAACGGTGGTTATGCAGTCACAAGTTGAAGT
15201091 TTTATGATAC
Statistics
Matches: 73, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (49 bp):
AACTCGGGCCCCCAGTTAACGGTGGTTATGCAGTCACAAGTTGAAGTAT
Found at i:15228167 original size:16 final size:18
Alignment explanation
Indices: 15228141--15228174 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
15228131 TAAAAATTAT
15228141 AAGTAAAACAATT-TAAA
1 AAGTAAAACAATTATAAA
15228158 AAGT-AAACAATTATAAA
1 AAGTAAAACAATTATAAA
15228175 TATATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (18 bp):
AAGTAAAACAATTATAAA
Found at i:15229218 original size:16 final size:15
Alignment explanation
Indices: 15229192--15229223 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
15229182 GTATAAGTAT
15229192 ATATAAATATATAAA
1 ATATAAATATATAAA
15229207 ATATAAAGTATATAAA
1 ATATAAA-TATATAAA
15229223 A
1 A
15229224 GTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
ATATAAATATATAAA
Found at i:15229233 original size:26 final size:25
Alignment explanation
Indices: 15229186--15229238 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
15229176 AGAAATGTAT
*
15229186 AAGTATATATAAATATATAAAATATA
1 AAGTATATATAAATATA-AAAAAATA
*
15229212 AAGTATATA-AAAGTTTAAAAAAATA
1 AAGTATATATAAA-TATAAAAAAATA
15229237 AA
1 AA
15229239 AAATAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (25 bp):
AAGTATATATAAATATAAAAAAATA
Found at i:15229438 original size:12 final size:12
Alignment explanation
Indices: 15229421--15229458 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15229411 TATAGAAAAT
15229421 ATGATAATAATA
1 ATGATAATAATA
*
15229433 ATGATAGTAAATA
1 ATGATAAT-AATA
15229446 ATG-TAATAATA
1 ATGATAATAATA
15229457 AT
1 AT
15229459 AGTAATGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 6 0.26
12 10 0.43
13 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (12 bp):
ATGATAATAATA
Found at i:15229444 original size:24 final size:24
Alignment explanation
Indices: 15229412--15229458 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15229402 ATGTATATGT
15229412 ATAGAAAAT-ATGATAATAATAATG
1 ATAGAAAATAATG-TAATAATAATG
*
15229436 ATAGTAAATAATGTAATAATAAT
1 ATAGAAAATAATGTAATAATAAT
15229459 AGTAATGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (24 bp):
ATAGAAAATAATGTAATAATAATG
Found at i:15231021 original size:44 final size:44
Alignment explanation
Indices: 15230893--15232258 Score: 1635
Period size: 44 Copynumber: 31.0 Consensus size: 44
15230883 AAGACTTGTA
* * * *
15230893 TCTTCGATCTA-TT-TCGCCAATATATGGGAAGACAATATCTACTT
1 TCTTCGATCTACTTCACGCCAATACAT--GAAGACAAGATCTGCTT
** * * **
15230937 TCTTCGATCTACTTTGCCCCTAATACATAAAGACAAGATCTATTT
1 TCTTCGATCTACTTCACGCC-AATACATGAAGACAAGATCTGCTT
* *
15230982 TCTTCGATCTACTTTACGCCAATACATGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231026 TCTTCGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * * *** *
15231070 TCTTTGATCTACTTTACCACCAGTATGGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
** * *
15231115 TCTTTAATCTACTTCATGTCAATACATGAAGACAAGATC--CATT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-TT
* * *
15231158 ATC-TCTGATCTACTTCATGTCAATACATGAAGACAAGATCTGCTA
1 -TCTTC-GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
15231203 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * *** *
15231247 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
* *
15231292 TCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231336 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
15231380 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* **
15231424 TCTTCGATCTACTTCACGCCGATACATGAAGACAAGATCTATTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231468 TCTTCGATCTACTTCACGCCGATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231512 TCCTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGTTTTCATTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG----C--TT
* * **
15231562 TCTTTGATCTACTTCACGCCGATACATGAAGACAAGATCTATTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * *
15231606 TCTTCAATCTACTTCACGCTAATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
15231650 TCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * ***
15231694 TCTTCAATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
*
15231739 TCTTCGATCTACTTCACGCCAATACATGAAGGCAAGA-------
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231776 --TTCGATCTACTTCACGCCGATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * *
15231818 TCTTCGATTTACTTCACGCCAATACATGAAGACAAGATTTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15231862 TCTTCGATCTACTTCACGCCGATACTTGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * * * *
15231906 TCTTCAATCTACTTCACCACCAGTATAGGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
* *
15231951 TCTTCGATCTACTTCACGCCAATACATGAAGGCAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * *
15231995 TCTTCGATCTACTTCACGCCAATACATGAAGACAATATATGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * *
15232039 TCTTCGATCTACTTCATGCCAATACATGAAGATAAGATCAGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
15232083 TCTTCGATCTACTTCACACCGATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *** *
15232127 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGATT
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
* *
15232172 TCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
15232216 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
15232259 ACCTTTCAAC
Statistics
Matches: 1149, Mismatches: 144, Indels: 58
0.85 0.11 0.04
Matches are distributed among these distances:
35 33 0.03
42 1 0.00
43 2 0.00
44 843 0.73
45 222 0.19
46 4 0.00
47 6 0.01
50 38 0.03
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
Found at i:15231212 original size:177 final size:176
Alignment explanation
Indices: 15230920--15232258 Score: 1649
Period size: 177 Copynumber: 7.6 Consensus size: 176
15230910 CAATATATGG
* ** ** * * *
15230920 GAAGACAATATCTACTTTCTTCGATCTACTTTGCCCCTAATACATAAAGACAAGATCTATTTTCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCC-AATACATGAAGACAAGATCTGTTTTCT
* * *
15230985 TCGATCTACTTTACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGTCAATA
65 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATA
* * * * ***
15231050 CATGAAGACAAGATCTGCTATCTTTGATCTACTTTACCACCAGTATGG
130 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCA-CGCCAGTACAT
* * ** * * ** *
15231098 GAAGACAAGATCTGCTATCTTTAATCTACTTCATGTCAATACATGAAGACAAGATCCATTATC-T
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* * *
15231162 CTGATCTACTTCATGTCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
66 C-GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATA
* * ***
15231227 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGG
130 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAGTACAT
* * * * *
15231275 GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* *
15231340 TGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATAC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATAC
*
15231405 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCC-GATACAT
131 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAG-TACAT
* * *
15231451 GAAGACAAGATCTATTTTCTTCGATCTACTTCACGCCGATACATGAAGACAAGATCTGTTTTCCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* *
15231516 CGATCTACTTCACGCCAATACATGAAGATAAGATCTGTTTTCATTTTCTTTGATCTACTTCACGC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTG----C--TTTCTTCGATCTACTTCACGC
* ** * * *
15231581 CGATACATGAAGACAAGATCTATTTTCTTCAATCTACTTCACGCTAATACAT
125 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTACAT
* *
15231633 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* * * ***
15231698 CAATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATA
66 CGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATA
*
15231763 CATGAAGGCAAGA---------TTCGATCTACTTCACGCC-GATACAT
130 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAG-TACAT
* *
15231801 GAAGACAAGATCTGTTTTCTTCGATTTACTTCACGCCAATACATGAAGACAAGATTTGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* * * * *
15231866 CGATCTACTTCACGCCGATACTTGAAGACAAGATCTGCTTTCTTCAATCTACTTCACCACCAGTA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCA-CGCCAATA
* * * *
15231931 TAGGAAGACAAGATCTACTTTCTTCGATCTACTTCACGCCAATACAT
130 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTACAT
* * *
15231978 GAAGGCAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAATATATGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
* * * * * *
15232043 CGATCTACTTCATGCCAATACATGAAGATAAGATCAGTTTTCTTCGATCTACTTCACACCGATAC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATAC
* * ***
15232108 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGG
131 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCA-CGCCAGTACAT
* *
15232155 GAAGACAAGATCTGATTTCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
15232220 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
15232259 ACCTTTCAAC
Statistics
Matches: 1018, Mismatches: 118, Indels: 51
0.86 0.10 0.04
Matches are distributed among these distances:
167 37 0.04
168 109 0.11
175 1 0.00
176 137 0.13
177 548 0.54
178 28 0.03
179 1 0.00
180 1 0.00
182 137 0.13
183 19 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (176 bp):
GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATAC
ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTACAT
Found at i:15231787 original size:35 final size:35
Alignment explanation
Indices: 15231741--15231856 Score: 124
Period size: 35 Copynumber: 3.1 Consensus size: 35
15231731 ATCTGCTTTC
*
15231741 TTCGATCTACTTCACGCCAATACATGAAGGCAAGA
1 TTCGATCTACTTCACGCCAATACATGAAGACAAGA
*
15231776 TTCGATCTACTTCACGCCGATACATGAAGACAAGA
1 TTCGATCTACTTCACGCCAATACATGAAGACAAGA
*
15231811 TCTGTTTTCTTCGATTTACTTCACGCCAATACATGAAGACAAGA
1 ---------TTCGATCTACTTCACGCCAATACATGAAGACAAGA
15231855 TT
1 TT
15231857 TGTTTTCTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
35 35 0.51
44 33 0.49
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (35 bp):
TTCGATCTACTTCACGCCAATACATGAAGACAAGA
Found at i:15238496 original size:16 final size:15
Alignment explanation
Indices: 15238459--15238490 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
15238449 GTATAAGTAT
15238459 ATATAAATATATAAA
1 ATATAAATATATAAA
15238474 ATATAAAGTATATAAA
1 ATATAAA-TATATAAA
15238490 A
1 A
15238491 GTTAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
ATATAAATATATAAA
Found at i:15238498 original size:24 final size:26
Alignment explanation
Indices: 15238453--15238504 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
15238443 AGAAATGTAT
*
15238453 AAGTATATATAAATATATAAAATATA
1 AAGTATATATAAATATATAAAAAATA
15238479 AAGTATATA-AAAGT-TA-AAAAAATA
1 AAGTATATATAAA-TATATAAAAAATA
15238503 AA
1 AA
15238505 AAATAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 9 0.38
25 5 0.21
26 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (26 bp):
AAGTATATATAAATATATAAAAAATA
Found at i:15238704 original size:12 final size:12
Alignment explanation
Indices: 15238687--15238724 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15238677 TATAGAAAAT
15238687 ATGATAATAATA
1 ATGATAATAATA
*
15238699 ATGATAGTAAATA
1 ATGATAAT-AATA
15238712 ATG-TAATAATA
1 ATGATAATAATA
15238723 AT
1 AT
15238725 AGTAATGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 6 0.26
12 10 0.43
13 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (12 bp):
ATGATAATAATA
Found at i:15238710 original size:24 final size:24
Alignment explanation
Indices: 15238678--15238724 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15238668 ATGTATATGT
15238678 ATAGAAAAT-ATGATAATAATAATG
1 ATAGAAAATAATG-TAATAATAATG
*
15238702 ATAGTAAATAATGTAATAATAAT
1 ATAGAAAATAATGTAATAATAAT
15238725 AGTAATGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (24 bp):
ATAGAAAATAATGTAATAATAATG
Found at i:15246984 original size:51 final size:51
Alignment explanation
Indices: 15246929--15247152 Score: 322
Period size: 51 Copynumber: 4.3 Consensus size: 51
15246919 GATCACATTT
*
15246929 ATCACTTGTCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTACCACTC
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTC
* *
15246980 ATCACTTGTCACTTGTCACTGATCAAAAAAGTGTAGCTAAAGCTACCACTC
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTC
* * *
15247031 ATCGCTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTATCACTTATC
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC---TC
*
15247085 ACTTGTCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
1 A----TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTC
15247140 ATCACTTGTCACT
1 ATCACTTGTCACT
15247153 GATCAGAAGT
Statistics
Matches: 154, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
51 104 0.68
54 3 0.02
55 2 0.01
58 45 0.29
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTC
Found at i:15246995 original size:58 final size:58
Alignment explanation
Indices: 15246930--15247152 Score: 287
Period size: 58 Copynumber: 4.1 Consensus size: 58
15246920 ATCACATTTA
*
15246930 TCACTTGTCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
1 TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
15246988 TCACTTGTCAC-TGATCA---A--A-A-AAGTGTAGCTAAAGCTACCACTCAT--C--G
1 TCACTTGTCACTTG-TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
* * *
15247035 ---CTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTG
1 TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
*
15247090 TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
15247148 TCACT
1 TCACT
15247153 GATCAGAAGT
Statistics
Matches: 144, Mismatches: 5, Indels: 32
0.80 0.03 0.18
Matches are distributed among these distances:
44 11 0.08
45 2 0.01
47 2 0.01
49 2 0.01
50 1 0.01
51 48 0.33
52 1 0.01
53 2 0.01
55 2 0.01
57 2 0.01
58 71 0.49
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (58 bp):
TCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTCATCACTTG
Found at i:15247056 original size:102 final size:104
Alignment explanation
Indices: 15246929--15247152 Score: 326
Period size: 109 Copynumber: 2.1 Consensus size: 104
15246919 GATCACATTT
* *
15246929 ATCACTTGTCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTACCAC-TCA-TCACTTGTCAC
1 ATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTCATTCACTTGTCAC
15246992 TTGTCACTGATCAAAAAAGTGTAGCTAAAGCTACCACTC
66 TTGTCACTGATCAAAAAAGTGTAGCTAAAGCTACCACTC
* *
15247031 ATCGCTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTGTCACTT
1 ATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC-T-TCA--T-TCACTT
* * *
15247096 GTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
61 GTCACTTGTCACTGATCAAAAAAGTGTAGCTAAAGCTACCACTC
15247140 ATCACTTGTCACT
1 ATCACTTGTCACT
15247153 GATCAGAAGT
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
102 45 0.42
105 3 0.03
109 59 0.55
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (104 bp):
ATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTCATTCACTTGTCAC
TTGTCACTGATCAAAAAAGTGTAGCTAAAGCTACCACTC
Found at i:15247095 original size:14 final size:14
Alignment explanation
Indices: 15247076--15247113 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
15247066 GCTAAAGCTA
15247076 TCACTTATCACTTG
1 TCACTTATCACTTG
*
15247090 TCACTTGTCACTTG
1 TCACTTATCACTTG
*
15247104 TCACTGATCA
1 TCACTTATCA
15247114 GATAAGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (14 bp):
TCACTTATCACTTG
Found at i:15250964 original size:41 final size:40
Alignment explanation
Indices: 15250908--15251118 Score: 224
Period size: 41 Copynumber: 5.2 Consensus size: 40
15250898 ATTTGGGTTC
* *
15250908 TGTGCCTAGCAGGCTTTGTGTCAGTGTATTATATTACGCTT
1 TGTGCCTAGCAGGCTTTGTGTC-GTGTATTATATCAGGCTT
* * * *
15250949 TGTGCCTAACAGGCTTTGTGTCGGTGTATAATATCGGGCTC
1 TGTGCCTAGCAGGCTTTGTGTC-GTGTATTATATCAGGCTT
* * * * *
15250990 TGTACCTAGGAGGCTTTGTGTCGATATACTATATTAGGCTT
1 TGTGCCTAGCAGGCTTTGTGTCG-TGTATTATATCAGGCTT
* * * * *
15251031 TGTGCCTAGAAGGCTTTGTGCCAATGCATTATATCACGCTT
1 TGTGCCTAGCAGGCTTTGTGTC-GTGTATTATATCAGGCTT
*
15251072 TGTGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGGCTT
1 TGTGCCTAGCAGGCTTTGTGTCG-TGTATTATATCAGGCTT
15251113 TGTGCC
1 TGTGCC
15251119 AGTATGTTAT
Statistics
Matches: 136, Mismatches: 31, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
40 1 0.01
41 135 0.99
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (40 bp):
TGTGCCTAGCAGGCTTTGTGTCGTGTATTATATCAGGCTT
Found at i:15251011 original size:82 final size:80
Alignment explanation
Indices: 15250858--15251118 Score: 269
Period size: 82 Copynumber: 3.2 Consensus size: 80
15250848 AAACATAACG
** * * * *
15250858 TTAT-TTAGGCTACGTGCCTAGCAGGCTTTGTACCGGTGATAT-TTGGGTTCTGTGCCTAGCAGG
1 TTATATTAGGCTTTGTGCCTAACAGGCTTTGTGCCGGTGATATATCGGGCTCTGTGCCTAGCAGG
15250921 CTTTGTGTC-AGTGTA
66 CTTTGTGTCGA-TGTA
* * * *
15250936 TTATATTACGCTTTGTGCCTAACAGGCTTTGTGTCGGTGTATAATATCGGGCTCTGTACCTAGGA
1 TTATATTAGGCTTTGTGCCTAACAGGCTTTGTGCCGGTG-AT-ATATCGGGCTCTGTGCCTAGCA
*
15251001 GGCTTTGTGTCGATATA
64 GGCTTTGTGTCGATGTA
* ** ** *
15251018 CTATATTAGGCTTTGTGCCTAGA-AGGCTTTGTGCCAATGCATTATATCACGCTTTGTGCCTAGC
1 TTATATTAGGCTTTGTGCCTA-ACAGGCTTTGTGCCGGTG-A-TATATCGGGCTCTGTGCCTAGC
*
15251082 AGGCTTCGTGTCGATGTA
63 AGGCTTTGTGTCGATGTA
*
15251100 TTATATCAGGCTTTGTGCC
1 TTATATTAGGCTTTGTGCC
15251119 AGTATGTTAT
Statistics
Matches: 150, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
78 4 0.03
79 28 0.19
80 2 0.01
81 2 0.01
82 111 0.74
83 3 0.02
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (80 bp):
TTATATTAGGCTTTGTGCCTAACAGGCTTTGTGCCGGTGATATATCGGGCTCTGTGCCTAGCAGG
CTTTGTGTCGATGTA
Done.