Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 57 of 207
Found at i:16834365 original size:40 final size:38
Alignment explanation
Indices: 16834329--16834437 Score: 112
Period size: 40 Copynumber: 2.8 Consensus size: 38
16834319 GATAAAAATA
*
16834329 CCACTAAAAATCAAGCATTAGCGGTGCTTTTCTAAAAACG
1 CCACTAAAAAT-AAGCATTAGCGGTACTTTT-TAAAAACG
* * * * *
16834369 CCACCAAAGATGGAGCATTAGCGGCACTTTTTGGAAAACG
1 CCACTAAAAAT-AAGCATTAGCGGTACTTTTT-AAAAACG
*
16834409 CCGCTAAAAATAAGCATTAGCGGTA-TTTT
1 CCACTAAAAATAAGCATTAGCGGTACTTTT
16834438 CTGAAAAGCG
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
38 4 0.07
39 13 0.23
40 39 0.70
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (38 bp):
CCACTAAAAATAAGCATTAGCGGTACTTTTTAAAAACG
Found at i:16834457 original size:39 final size:39
Alignment explanation
Indices: 16834382--16834457 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 39
16834372 CCAAAGATGG
*
16834382 AGCATTAGCGGCACTTTTTGGAAAACGCCGCTAAAAATA
1 AGCATTAGCGGCACTTTTTGGAAAACGCCGCAAAAAATA
* *
16834421 AGCATTAGCGGTA-TTTTCT-GAAAAGCGCGGCAAAAAA
1 AGCATTAGCGGCACTTTT-TGGAAAA-CGCCGCAAAAAA
16834458 CCTAAGACCG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 9 0.28
39 23 0.72
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (39 bp):
AGCATTAGCGGCACTTTTTGGAAAACGCCGCAAAAAATA
Found at i:16834683 original size:41 final size:40
Alignment explanation
Indices: 16834492--16834692 Score: 242
Period size: 41 Copynumber: 4.9 Consensus size: 40
16834482 TGAGTTTTGG
* * *
16834492 GGGCATTTAGCGGTGTTTTTGAAGAA-CTGCCGCTAATGATC
1 GGGCCTTTAGCGGCGTTTTTGAA-AAGC-GCCGCTAATGCTC
* *
16834533 GGGCCTTTAGCGGTGTTTTTGAAGAAGTGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGCTC
*
16834574 GGGCCTTTAGCAGCGTTTTTGAAAATGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAA-GCGCCGCTAATGCTC
** *
16834615 GTTCCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTC
* *
16834656 GGGCCATTAGCGGCATTTTTGAGAAAGCGCCGCTAAT
1 GGGCCTTTAGCGGCGTTTTTGA-AAAGCGCCGCTAAT
16834693 AATAAAAAAA
Statistics
Matches: 141, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
40 3 0.02
41 134 0.95
42 4 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (40 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC
Found at i:16835272 original size:14 final size:14
Alignment explanation
Indices: 16835250--16835302 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
16835240 GATTTAAGGG
*
16835250 TTAGTGGTTATGCT
1 TTAGGGGTTATGCT
* **
16835264 TTAGGGGTTTAGGGG
1 TTAGGGG-TTATGCT
*
16835279 TTAAGGGTTATGCT
1 TTAGGGGTTATGCT
16835293 TTAGGGGTTA
1 TTAGGGGTTA
16835303 GGGGGATTTA
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 19 0.66
15 10 0.34
ACGTcount: A:0.17, C:0.04, G:0.38, T:0.42
Consensus pattern (14 bp):
TTAGGGGTTATGCT
Found at i:16835307 original size:29 final size:29
Alignment explanation
Indices: 16835242--16835306 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
16835232 GGATTTAAGA
*
16835242 TTTAAGGGTTAGTGGTTATGCTTTAGGGG
1 TTTAGGGGTTAGTGGTTATGCTTTAGGGG
16835271 TTTAGGGGTTAAG-GGTTATGCTTTAGGGG
1 TTTAGGGGTT-AGTGGTTATGCTTTAGGGG
16835300 -TTAGGGG
1 TTTAGGGG
16835307 GATTTAGGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 7 0.21
29 25 0.74
30 2 0.06
ACGTcount: A:0.17, C:0.03, G:0.42, T:0.38
Consensus pattern (29 bp):
TTTAGGGGTTAGTGGTTATGCTTTAGGGG
Found at i:16835328 original size:37 final size:37
Alignment explanation
Indices: 16835267--16835339 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
16835257 TTATGCTTTA
* *
16835267 GGGGTTTAGGGGTTAAGGGTTATGCTTTAGGGGTTAG
1 GGGGTTTAGGAGTTAAGAGTTATGCTTTAGGGGTTAG
16835304 GGGGATTTAGGAGTT-AGAGTTATGCTTTAGGGGTTA
1 GGGG-TTTAGGAGTTAAGAGTTATGCTTTAGGGGTTA
16835340 AAAGGTTTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 24 0.73
38 9 0.27
ACGTcount: A:0.19, C:0.03, G:0.42, T:0.36
Consensus pattern (37 bp):
GGGGTTTAGGAGTTAAGAGTTATGCTTTAGGGGTTAG
Found at i:16835763 original size:19 final size:17
Alignment explanation
Indices: 16835722--16835755 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16835712 AATATAAGAA
16835722 AAAATAAAATAAAAAAT
1 AAAATAAAATAAAAAAT
*
16835739 ATAAATGAAATAAAAAA
1 A-AAATAAAATAAAAAA
16835756 ATTAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 1 0.07
18 14 0.93
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:16836559 original size:17 final size:17
Alignment explanation
Indices: 16836534--16836603 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 17
16836524 GGGGTTATGT
*
16836534 TTTAGGGGTTAGGGGGA
1 TTTAAGGGTTAGGGGGA
**
16836551 TTTAAGGGTTAAGGGTTA
1 TTTAAGGGTT-AGGGGGA
*
16836569 TGCTTTAGGAGTTAGGGGGA
1 T--TTAAGG-GTTAGGGGGA
16836589 TTT-AGGGATTAGGGG
1 TTTAAGGG-TTAGGGG
16836604 TTAGGGATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
16 1 0.02
17 19 0.45
18 8 0.19
20 11 0.26
21 3 0.07
ACGTcount: A:0.21, C:0.01, G:0.44, T:0.33
Consensus pattern (17 bp):
TTTAAGGGTTAGGGGGA
Found at i:16836567 original size:38 final size:38
Alignment explanation
Indices: 16836512--16836606 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 38
16836502 AGGGTCTGAA
* * *
16836512 ATTTAAGGTTTAGGGGTTATGTTTTAGGGGTTAGGGGG
1 ATTTAAGGGTTAGGGGTTATGCTTTAGGAGTTAGGGGG
*
16836550 ATTTAAGGGTTAAGGGTTATGCTTTAGGAGTTAGGGGG
1 ATTTAAGGGTTAGGGGTTATGCTTTAGGAGTTAGGGGG
16836588 ATTT-AGGGATTAGGGGTTA
1 ATTTAAGGG-TTAGGGGTTA
16836607 GGGATTTGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 4 0.08
38 47 0.92
ACGTcount: A:0.22, C:0.01, G:0.40, T:0.37
Consensus pattern (38 bp):
ATTTAAGGGTTAGGGGTTATGCTTTAGGAGTTAGGGGG
Found at i:16836609 original size:14 final size:15
Alignment explanation
Indices: 16836584--16836624 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
16836574 TAGGAGTTAG
16836584 GGGGATTTAGGGATTA
1 GGGG-TTTAGGGATTA
*
16836600 GGGG-TTAGGGATTT
1 GGGGTTTAGGGATTA
16836614 GGGGTTTAGGG
1 GGGGTTTAGGG
16836625 TTTCAACGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 6 0.26
16 4 0.17
ACGTcount: A:0.17, C:0.00, G:0.51, T:0.32
Consensus pattern (15 bp):
GGGGTTTAGGGATTA
Found at i:16838101 original size:25 final size:27
Alignment explanation
Indices: 16838073--16838125 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
16838063 GTCTTCCAAT
16838073 TTGTC-ATT-CTGCTATAATTCATGCC
1 TTGTCTATTACTGCTATAATTCATGCC
* *
16838098 TTGTCTTTTAATTGCTATAATTCATGCC
1 TTGTCTATT-ACTGCTATAATTCATGCC
16838126 ATGTTTGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 5 0.22
26 2 0.09
28 16 0.70
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (27 bp):
TTGTCTATTACTGCTATAATTCATGCC
Found at i:16839182 original size:21 final size:21
Alignment explanation
Indices: 16839156--16839202 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
16839146 TTAATTAAAT
*
16839156 CAGAGGCGGCAGCGAGGGAAG
1 CAGAGGCGGCAACGAGGGAAG
* *
16839177 CAGAGGCTGCAATGAGGGAAG
1 CAGAGGCGGCAACGAGGGAAG
*
16839198 TAGAG
1 CAGAG
16839203 CAGAGTAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.15, G:0.47, T:0.06
Consensus pattern (21 bp):
CAGAGGCGGCAACGAGGGAAG
Found at i:16839365 original size:19 final size:19
Alignment explanation
Indices: 16839343--16839394 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
16839333 AAAAATAATA
16839343 TGATTTATATTTGA-TTTAT
1 TGATTTA-ATTTGATTTTAT
16839362 TGATATTAATATT-ATTTTAT
1 TGAT-TTAAT-TTGATTTTAT
*
16839382 TCATTTAATTTGA
1 TGATTTAATTTGA
16839395 AATAATTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 2 0.07
19 13 0.46
20 13 0.46
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.60
Consensus pattern (19 bp):
TGATTTAATTTGATTTTAT
Found at i:16839571 original size:44 final size:44
Alignment explanation
Indices: 16839521--16839626 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
16839511 GGCGTTTTCA
* *
16839521 GAAAAAGCACCGCTAAAGGTCACCAAACAATAGAGGCATTTGTG
1 GAAAAAGCGCCGCTAAAGGTCACCAAACAATAGAGACATTTGTG
* *
16839565 GGAAAAGCGCCGCTAAAGGTCACCAAACAATAGCGACATTTGTG
1 GAAAAAGCGCCGCTAAAGGTCACCAAACAATAGAGACATTTGTG
*
16839609 GAAAAAGCGCAGCTAAAG
1 GAAAAAGCGCCGCTAAAG
16839627 AACATGACCT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.41, C:0.21, G:0.25, T:0.14
Consensus pattern (44 bp):
GAAAAAGCGCCGCTAAAGGTCACCAAACAATAGAGACATTTGTG
Found at i:16839656 original size:44 final size:42
Alignment explanation
Indices: 16839595--16839730 Score: 193
Period size: 43 Copynumber: 3.2 Consensus size: 42
16839585 CACCAAACAA
*
16839595 TAGCGACATTTGTGGAAAAAGCGCAGCTAAAGAACATGACCTT
1 TAGCGACATTTGTGG-AAAAGCGCCGCTAAAGAACATGACCTT
* *
16839638 TAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACTTT
1 TAGCGACATTTGT-GGAAAAGCGCCGCTAAAGAACATGACCTT
*
16839681 TAAC-AGCATTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
1 TAGCGA-CATTTGT-GGAAAAGCGCCGCTAAAGAACATGACCTT
16839724 TAGCGAC
1 TAGCGAC
16839731 GTTTATAGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
42 1 0.01
43 78 0.95
44 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (42 bp):
TAGCGACATTTGTGGAAAAGCGCCGCTAAAGAACATGACCTT
Found at i:16841200 original size:38 final size:38
Alignment explanation
Indices: 16841152--16841234 Score: 139
Period size: 38 Copynumber: 2.2 Consensus size: 38
16841142 TGAGATTTGG
16841152 TTGCATGTTAAAACATGCCCTATATGAAATTATCCGAT
1 TTGCATGTTAAAACATGCCCTATATGAAATTATCCGAT
* * *
16841190 TTGCATGTTAAAACATGCCTTATATGATATTATTCGAT
1 TTGCATGTTAAAACATGCCCTATATGAAATTATCCGAT
16841228 TTGCATG
1 TTGCATG
16841235 ATTAGCATGC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (38 bp):
TTGCATGTTAAAACATGCCCTATATGAAATTATCCGAT
Found at i:16841603 original size:191 final size:191
Alignment explanation
Indices: 16841279--16841666 Score: 650
Period size: 191 Copynumber: 2.0 Consensus size: 191
16841269 GATGAGTAAA
* * *
16841279 ATGTTTATATATGTTCATTATGGTCATATCACATGCATGGGGTGAGATATTATAAGGACGATGAA
1 ATGTTTACATATGTTCATTATGATCATATCACATGCATGGGGTGAGATATTATAAGGACGAGGAA
* * * * *
16841344 TTGGTGGCTTCGTCCACAACCTACATGGTAGCTTGTTTGCAAATATTGGTGGCTTCGTCTACATT
66 TTGGTGGCTTCGTCCACAACCTACATGATAGATTGTCTGCAAATATTGGTGGCTTCATCCACATT
* *
16841409 GGAGTGTTTGGATGGATGAGTTCTGGGGAACTCTTTTTGGAGTGTAGCGATGATGGGTAGG
131 GGAGTGTTTGGATGGATGAGTTCTGGGGAAATCTTTTTGAAGTGTAGCGATGATGGGTAGG
* *
16841470 ATGTTTACATATGTTCATTATGATCATATCACATGCATGGGGTGGGATATTATAAGGAGGAGGAA
1 ATGTTTACATATGTTCATTATGATCATATCACATGCATGGGGTGAGATATTATAAGGACGAGGAA
*
16841535 TTGGTGGCTTCGTCTACAACCTACATGATAGATTGTCTGCAAATATTGGTGGCTTCATCCACATT
66 TTGGTGGCTTCGTCCACAACCTACATGATAGATTGTCTGCAAATATTGGTGGCTTCATCCACATT
*
16841600 GGAGTGTTTGGATGGATGAGTTCTGGGGAAATCTTTTTGAAGTGTAGCGGTGATGGGTAGG
131 GGAGTGTTTGGATGGATGAGTTCTGGGGAAATCTTTTTGAAGTGTAGCGATGATGGGTAGG
16841661 ATGTTT
1 ATGTTT
16841667 TATAAAAACT
Statistics
Matches: 183, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
191 183 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (191 bp):
ATGTTTACATATGTTCATTATGATCATATCACATGCATGGGGTGAGATATTATAAGGACGAGGAA
TTGGTGGCTTCGTCCACAACCTACATGATAGATTGTCTGCAAATATTGGTGGCTTCATCCACATT
GGAGTGTTTGGATGGATGAGTTCTGGGGAAATCTTTTTGAAGTGTAGCGATGATGGGTAGG
Found at i:16844695 original size:21 final size:21
Alignment explanation
Indices: 16844671--16844710 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
16844661 TTACCATTAT
*
16844671 TGTTA-TAGTTGTTATTATTCA
1 TGTTATTAGTTATT-TTATTCA
16844692 TGTTATTAGTTATTTTATT
1 TGTTATTAGTTATTTTATT
16844711 TGGTTGGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (21 bp):
TGTTATTAGTTATTTTATTCA
Found at i:16845735 original size:18 final size:18
Alignment explanation
Indices: 16845712--16845752 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
16845702 TTAAGTGAGA
16845712 GTGAGAAACTATTCCTTC
1 GTGAGAAACTATTCCTTC
16845730 GTGAGAAACTATTCCTTC
1 GTGAGAAACTATTCCTTC
16845748 GTGAG
1 GTGAG
16845753 GTCTTCACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (18 bp):
GTGAGAAACTATTCCTTC
Found at i:16848328 original size:19 final size:19
Alignment explanation
Indices: 16848304--16848349 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
16848294 TCGATGCTTT
*
16848304 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTACAT-CA
16848323 TTTGCATTGCATTACATCA
1 TTTGCATTGCATTACATCA
*
16848342 TATGCATT
1 TTTGCATT
16848350 AAAGTCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTACATCA
Found at i:16857178 original size:143 final size:140
Alignment explanation
Indices: 16856871--16857417 Score: 548
Period size: 140 Copynumber: 3.9 Consensus size: 140
16856861 AGTCATTATG
* * *
16856871 GCGAATCTTATTTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGC--CA--A---TAATCTTATC-
1 GCGAATCTTATTTCCCTGGCA-TTGCAGTGGAACAGATTAAAGCTACAGTACGCAAATCTTATCT
* * * * ** * * * *
16856927 TCTCTAAACTTGCAGTGAAGCGGATTGAAGTTACGAGTCTTATCTCCCTGAAGTTGTAGCGAAGC
65 TCT-TGAAGTTGCAGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAAGT
* *
16856992 AAACTA-AAGACA
129 AGAC-AGAAGATA
* * *
16857004 GCGAATCTTATTTCCGTAGCATTGCAATGGAACAGATTAAAGCTACAAGTTACGGCAAATCTTAT
1 GCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTAC-AG-TAC-GCAAATCTTAT
16857069 CTT-TCTGAAGTTGCAGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAA
63 CTTCT-TGAAGTTGCAGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAA
16857133 GTAGACAGAAGATA
127 GTAGACAGAAGATA
* *
16857147 GCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTACAGATA-GAAAATCTTATCT
1 GCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTACAG-TACGCAAATCTTATCT
* * * * * *
16857211 CCTTGAAGTTGCAAAG-GGA-CAAATTAAAGCCACTAGCCTTATCTCCCTGAAGTTGTAGCGGAG
65 TCTTGAAGTTGC--AGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAAG
*
16857274 TAGACTGAAGATA
128 TAGACAGAAGATA
* * * * *
16857287 GTGAATCTTATTTCCTTGGCGTTGCAGTAGAACAGATTAAAGCTACAG-ACAACAAATCTTATCT
1 GCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTACAGTAC-GCAAATCTTATCT
* * * * * *
16857351 TCTTGAAGTTGCAGAGGAGCAGATTAAAGCCACCATCCTTATCTACTTGAAGTTGCAGCGGAGTA
65 TCTTGAAGTTGCAGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAAGTA
16857416 GA
130 GA
16857418 TCGAAGCTAC
Statistics
Matches: 350, Mismatches: 44, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
133 36 0.10
134 2 0.01
135 1 0.00
136 1 0.00
138 3 0.01
139 4 0.01
140 180 0.51
141 3 0.01
142 7 0.02
143 112 0.32
144 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (140 bp):
GCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTACAGTACGCAAATCTTATCTT
CTTGAAGTTGCAGTGAAGCAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGAAGTAG
ACAGAAGATA
Found at i:16859190 original size:21 final size:21
Alignment explanation
Indices: 16859166--16859225 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
16859156 TTACCATTAT
*
16859166 TGTTA-TAGTTGTTATTATTCA
1 TGTTATTAGTTATT-TTATTCA
16859187 TGTTATTAGTTATTTTATT--
1 TGTTATTAGTTATTTTATTCA
*
16859206 TGGTTGTTAGTTATTTTATT
1 T-GTTATTAGTTATTTTATT
16859226 TGTTTACTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 1 0.03
20 17 0.49
21 10 0.29
22 7 0.20
ACGTcount: A:0.20, C:0.02, G:0.15, T:0.63
Consensus pattern (21 bp):
TGTTATTAGTTATTTTATTCA
Found at i:16859731 original size:18 final size:17
Alignment explanation
Indices: 16859704--16859737 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16859694 AAGGGATCGT
16859704 ATTTTAAATTCTTTTCAA
1 ATTTTAAATT-TTTTCAA
*
16859722 ATTTTCAATTTTTTCA
1 ATTTTAAATTTTTTCA
16859738 CATTAAGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTAAATTTTTTCAA
Found at i:16861909 original size:54 final size:53
Alignment explanation
Indices: 16861784--16861976 Score: 151
Period size: 54 Copynumber: 3.6 Consensus size: 53
16861774 CTCTACCAAA
** * * * **
16861784 AGATAGTCCTGATAGACCTT-CTACATAAAATAGTCATGACAGACCTT-CCACAAA
1 AGATAGTCCTGACGGA-CTTCCTCCATAAGATAGTC-TGA-AGAACTTCCCACATT
*
16861838 AGATAGTCCTGACGGACTTTCTACCA-AAGATAGTCCTGAAGAACTTCCCACATT
1 AGATAGTCCTGACGGACTTCCT-CCATAAGATAGT-CTGAAGAACTTCCCACATT
* * * * *
16861892 AGATAGTCCTTG-TGGACTTCCTGCATAAGATAGTCTTATGGACTTCCCACATT
1 AGATAGTCC-TGACGGACTTCCTCCATAAGATAGTCTGAAGAACTTCCCACATT
* * **
16861945 AGATAGTCATTACGGACTTCCAGCATAAGATA
1 AGATAGTCCTGACGGACTTCCTCCATAAGATA
16861977 ATCCTACGAA
Statistics
Matches: 115, Mismatches: 17, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
52 1 0.01
53 53 0.46
54 56 0.49
55 5 0.04
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (53 bp):
AGATAGTCCTGACGGACTTCCTCCATAAGATAGTCTGAAGAACTTCCCACATT
Found at i:16861975 original size:27 final size:26
Alignment explanation
Indices: 16861783--16861996 Score: 130
Period size: 27 Copynumber: 8.0 Consensus size: 26
16861773 CCTCTACCAA
** *
16861783 AAGATAGTCCTGATAGACCTTCTACAT
1 AAGATAGTCCTGACGGA-CTTCCACAT
* * * *
16861810 AAAATAGTCATGACAGACCTTCCACAA
1 AAGATAGTCCTGACGGA-CTTCCACAT
*
16861837 AAGATAGTCCTGACGGACTTTCTACCA-
1 AAGATAGTCCTGACGGAC-TTCCA-CAT
* *
16861864 AAGATAGTCCTGAAGAACTTCCCACAT
1 AAGATAGTCCTGACGGACTT-CCACAT
* * *
16861891 TAGATAGTCCTTG-TGGACTTCCTGCAT
1 AAGATAGTCC-TGACGGACTTCC-ACAT
* *
16861918 AAGATAGT-CTTATGGACTTCCCACAT
1 AAGATAGTCCTGACGGACTT-CCACAT
* * *
16861944 TAGATAGTCATTACGGACTTCCAGCAT
1 AAGATAGTCCTGACGGACTTCCA-CAT
* *
16861971 AAGATAATCCT-ACGAACTTCCTACAT
1 AAGATAGTCCTGACGGACTTCC-ACAT
16861997 TTACGGTAAT
Statistics
Matches: 150, Mismatches: 26, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
25 1 0.01
26 40 0.27
27 105 0.70
28 4 0.03
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (26 bp):
AAGATAGTCCTGACGGACTTCCACAT
Found at i:16861990 original size:53 final size:53
Alignment explanation
Indices: 16861838--16861997 Score: 178
Period size: 53 Copynumber: 3.0 Consensus size: 53
16861828 CTTCCACAAA
* * *
16861838 AGATAGTCCTGACGGACTTTCTACCA-AAGATAGTCCTGAAGAACTTCCCACATT
1 AGATAGTCCTTACGGAC-TTCCAGCATAAGATAGTCCT-AAGAACTTCCCACATT
** * * * *
16861892 AGATAGTCCTTGTGGACTTCCTGCATAAGATAGTCTTATGGACTTCCCACATT
1 AGATAGTCCTTACGGACTTCCAGCATAAGATAGTCCTAAGAACTTCCCACATT
* * * *
16861945 AGATAGTCATTACGGACTTCCAGCATAAGATAATCCTACGAACTTCCTACATT
1 AGATAGTCCTTACGGACTTCCAGCATAAGATAGTCCTAAGAACTTCCCACATT
16861998 TACGGTAATG
Statistics
Matches: 87, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
53 63 0.72
54 24 0.28
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (53 bp):
AGATAGTCCTTACGGACTTCCAGCATAAGATAGTCCTAAGAACTTCCCACATT
Found at i:16863789 original size:60 final size:60
Alignment explanation
Indices: 16863716--16863846 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 60
16863706 TCCCTTTTGA
* * * * *
16863716 AATTTTCAAAATTTGAACTAAATTGAGAAA-TTTAGTAAATCCTGAGAGCTAAATTTATTG
1 AATTTTTAGAATTTGAACTAAAATGACAAATTTTA-TAAATACTGAGAGCTAAATTTATTG
* * * * *
16863776 AATTTTTAGAATTTGGACTAAAATGACAAATTTTATAAATATTGAGGGTTAAATTTGTTG
1 AATTTTTAGAATTTGAACTAAAATGACAAATTTTATAAATACTGAGAGCTAAATTTATTG
16863836 AACTTTTTAGA
1 AA-TTTTTAGA
16863847 TTTAGCGTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
60 47 0.80
61 12 0.20
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (60 bp):
AATTTTTAGAATTTGAACTAAAATGACAAATTTTATAAATACTGAGAGCTAAATTTATTG
Found at i:16863933 original size:20 final size:19
Alignment explanation
Indices: 16863909--16863946 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
16863899 TAGACCAATA
16863909 AAAAAAGACCCACGTCAGC
1 AAAAAAGACCCACGTCAGC
16863928 AAAAAAGACCCACGTCAGC
1 AAAAAAGACCCACGTCAGC
16863947 TTTCTATCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.32, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAAAGACCCACGTCAGC
Found at i:16864575 original size:37 final size:37
Alignment explanation
Indices: 16864516--16864589 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
16864506 TAAATTATTT
* * * *
16864516 TAATTAAATTTTAATTCATTATTCAAAATTTTAAATA
1 TAATTAAATTGTAATTAATTATTCAAAAATTCAAATA
*
16864553 TAATTAAATTGT-ATTAACTTATTTAAAAATTCAAATA
1 TAATTAAATTGTAATTAA-TTATTCAAAAATTCAAATA
16864590 CAATAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 4 0.13
37 27 0.87
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (37 bp):
TAATTAAATTGTAATTAATTATTCAAAAATTCAAATA
Found at i:16866321 original size:16 final size:16
Alignment explanation
Indices: 16866300--16866341 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
16866290 TTTTGATAAA
16866300 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
16866316 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
*
16866332 AGTAAAATTA
1 ATTAAAATTA
16866342 TCAAATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:16866569 original size:16 final size:16
Alignment explanation
Indices: 16866548--16866581 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
16866538 TATATATTTT
16866548 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
16866564 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
16866580 AA
1 AA
16866582 CTAGTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (16 bp):
AAACATAAAAAACTTA
Found at i:16868690 original size:22 final size:22
Alignment explanation
Indices: 16868654--16868695 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
16868644 AAAATTGTTT
16868654 TAATGTTGCACGT-AATTTTCA
1 TAATGTTGCACGTAAATTTTCA
*
16868675 TAATAGTTGCATGTAAATTTT
1 TAAT-GTTGCACGTAAATTTT
16868696 TATTTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (22 bp):
TAATGTTGCACGTAAATTTTCA
Found at i:16869900 original size:16 final size:16
Alignment explanation
Indices: 16869881--16869913 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
16869871 TGTTTTTGGG
*
16869881 TTTCGGGGTTTAGTTT
1 TTTCGGGATTTAGTTT
16869897 TTTCGGGATTTAGTTT
1 TTTCGGGATTTAGTTT
16869913 T
1 T
16869914 ATCTCTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.27, T:0.58
Consensus pattern (16 bp):
TTTCGGGATTTAGTTT
Found at i:16871041 original size:19 final size:19
Alignment explanation
Indices: 16870989--16871029 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
16870979 AAAATCAAAG
* *
16870989 TAATTTTTAAATTTTGAAAA
1 TAATTTTTAAA-ATTAAAAA
16871009 TAATTTTTAAAATTAAAAA
1 TAATTTTTAAAATTAAAAA
16871028 TA
1 TA
16871030 TTTATTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATTTTTAAAATTAAAAA
Found at i:16871065 original size:18 final size:19
Alignment explanation
Indices: 16871044--16871084 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
16871034 TTGAAATTCT
*
16871044 AAAATTTAT-ATTTTAAAA
1 AAAATTTATAAATTTAAAA
16871062 AAAA-TTATAAATTTAAAA
1 AAAATTTATAAATTTAAAA
16871080 AAAAT
1 AAAAT
16871085 CTAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTTATAAATTTAAAA
Found at i:16871092 original size:10 final size:10
Alignment explanation
Indices: 16871077--16871101 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
16871067 TATAAATTTA
16871077 AAAAAAATCT
1 AAAAAAATCT
16871087 AAAAAAATCT
1 AAAAAAATCT
16871097 AAAAA
1 AAAAA
16871102 TTTTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATCT
Found at i:16871102 original size:29 final size:28
Alignment explanation
Indices: 16871059--16871113 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
16871049 TTATATTTTA
*
16871059 AAAAAAATTATAAATTTAAAAAAAATCT
1 AAAAAAATTAAAAATTTAAAAAAAATCT
* *
16871087 AAAAAAATCTAAAAATTTTAATAAAAT
1 AAAAAAAT-TAAAAATTTAAAAAAAAT
16871114 AATAATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAAAAATTAAAAATTTAAAAAAAATCT
Found at i:16872926 original size:50 final size:50
Alignment explanation
Indices: 16872834--16872930 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
16872824 CAACTCGCAA
*
16872834 GAGCGTCCCGTTATTTAGATCTTATGAGCATCCCGTTAAATGGCTCTCAC
1 GAGCGTCCCGATATTTAGATCTTATGAGCATCCCGTTAAATGGCTCTCAC
* * * * *
16872884 GAGCTTCCCGATATTTGGCTCTTATGAGCTTTCCGATT-AATGGCTCT
1 GAGCGTCCCGATATTTAGATCTTATGAGCATCCCG-TTAAATGGCTCT
16872931 TTTGAGTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 38 0.95
51 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (50 bp):
GAGCGTCCCGATATTTAGATCTTATGAGCATCCCGTTAAATGGCTCTCAC
Found at i:16873035 original size:24 final size:25
Alignment explanation
Indices: 16872857--16873111 Score: 105
Period size: 25 Copynumber: 10.4 Consensus size: 25
16872847 TTTAGATCTT
* * *
16872857 ATGAGCATCCCGTTAAATGGCTCTC
1 ATGAGCTTCCCGTTATATGGCTCGC
* * * **
16872882 ACGAGCTTCCCGATATTTGGCTCTT
1 ATGAGCTTCCCGTTATATGGCTCGC
* **
16872907 ATGAGCTTTCCGATTA-ATGGCTCTT
1 ATGAGCTTCCCG-TTATATGGCTCGC
* * * * * *
16872932 TTGAGTTTCTCGATA-ATTAGCTCTC
1 ATGAGCTTCCCGTTATA-TGGCTCGC
*
16872957 ATGAGCTT--C-TTAATATTGGCGCGC
1 ATGAGCTTCCCGTT-ATA-TGGCTCGC
* * * *
16872981 ATGAACTTCCCG-AATTTAGCTC-C
1 ATGAGCTTCCCGTTATATGGCTCGC
16873004 ATTGAGCTTCCCGTT-TATGGCTCGC
1 A-TGAGCTTCCCGTTATATGGCTCGC
* * *
16873029 ATAAGCTTCCTGATAT-TGGCTCGC
1 ATGAGCTTCCCGTTATATGGCTCGC
* ** * *
16873053 AGGAGCTTCTTGTTATATGACTCAC
1 ATGAGCTTCCCGTTATATGGCTCGC
* *
16873078 ATGAGCTTCCCGTTACATGGCTCGT
1 ATGAGCTTCCCGTTATATGGCTCGC
*
16873103 AAGAGCTTC
1 ATGAGCTTC
16873112 TCGACTACAT
Statistics
Matches: 169, Mismatches: 49, Indels: 24
0.70 0.20 0.10
Matches are distributed among these distances:
22 1 0.01
23 4 0.02
24 67 0.40
25 94 0.56
26 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCGC
Found at i:16880347 original size:24 final size:24
Alignment explanation
Indices: 16880297--16880426 Score: 102
Period size: 24 Copynumber: 5.4 Consensus size: 24
16880287 GGCTCCCTCA
*
16880297 AGCTTCCCGATAATTGGCTCGCATG
1 AGCTTCCCGAT-ATTGGCTCACATG
*
16880322 AGCTTCCCGATATTGGCTCACGTG
1 AGCTTCCCGATATTGGCTCACATG
* ***
16880346 AGCTTCTCGA-ATTTGGCTCTTTTG
1 AGCTTCCCGATA-TTGGCTCACATG
* * ** *
16880370 AGCTTCCCG-TTTATGACTCGTATA
1 AGCTTCCCGATAT-TGGCTCACATG
* *
16880394 AGCTTCCCGATATTGGCTCGCAAG
1 AGCTTCCCGATATTGGCTCACATG
16880418 AGCTTCCCG
1 AGCTTCCCG
16880427 TTACATGGCT
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
23 2 0.02
24 69 0.82
25 13 0.15
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (24 bp):
AGCTTCCCGATATTGGCTCACATG
Found at i:16880398 original size:48 final size:50
Alignment explanation
Indices: 16880345--16880452 Score: 116
Period size: 48 Copynumber: 2.2 Consensus size: 50
16880335 TGGCTCACGT
**** *
16880345 GAGCTTCTCGAAT-TTGGCTCTTTTGAGCTTCCCGTT-TATGACTCGTATA
1 GAGCTTCTCGAATATTGGCTCGCAAGAGCTTCCCGTTACATGACTCGTA-A
* *
16880394 -AGCTTCCCG-ATATTGGCTCGCAAGAGCTTCCCGTTACATGGCTCGTAA
1 GAGCTTCTCGAATATTGGCTCGCAAGAGCTTCCCGTTACATGACTCGTAA
16880442 GAGCTTCTCGA
1 GAGCTTCTCGA
16880453 CTACATGCTC
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
47 2 0.04
48 28 0.60
49 17 0.36
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (50 bp):
GAGCTTCTCGAATATTGGCTCGCAAGAGCTTCCCGTTACATGACTCGTAA
Found at i:16880443 original size:25 final size:25
Alignment explanation
Indices: 16880369--16880470 Score: 86
Period size: 25 Copynumber: 4.2 Consensus size: 25
16880359 TGGCTCTTTT
* *
16880369 GAGCTTCCCGTT-TATGACTCGTATA
1 GAGCTTCCCGTTACATGGCTCGTA-A
* * *
16880394 -AGCTTCCCGATA-TTGGCTCGCAA
1 GAGCTTCCCGTTACATGGCTCGTAA
16880417 GAGCTTCCCGTTACATGGCTCGTAA
1 GAGCTTCCCGTTACATGGCTCGTAA
* * *
16880442 GAGCTTCTCGACTACAT-GCTCGTAT
1 GAGCTTCCCG-TTACATGGCTCGTAA
16880467 GAGC
1 GAGC
16880471 ATACCTGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.02
24 28 0.44
25 29 0.46
26 5 0.08
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (25 bp):
GAGCTTCCCGTTACATGGCTCGTAA
Found at i:16883031 original size:24 final size:24
Alignment explanation
Indices: 16882987--16883038 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
16882977 TTTCTAGAAG
* *
16882987 ATTTAATATTTATTAATATAATAT
1 ATTTAACATTTATTAACATAATAT
* *
16883011 ATTTAACATTTATTAGCATAATTT
1 ATTTAACATTTATTAACATAATAT
16883035 ATTT
1 ATTT
16883039 GACCTACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTAACATTTATTAACATAATAT
Found at i:16884332 original size:11 final size:11
Alignment explanation
Indices: 16884316--16884373 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
16884306 ATTTTTTTAA
16884316 TTTTAAAATAT
1 TTTTAAAATAT
*
16884327 TTTTAAAATGCT
1 TTTTAAAAT-AT
* *
16884339 TTTT---TTAA
1 TTTTAAAATAT
16884347 TTTTAAAATAT
1 TTTTAAAATAT
16884358 TTTTAAAATACT
1 TTTTAAAATA-T
16884370 TTTT
1 TTTT
16884374 TTTTTTAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
8 4 0.11
9 1 0.03
11 21 0.58
12 10 0.28
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:16884345 original size:31 final size:31
Alignment explanation
Indices: 16884307--16884375 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
16884297 AATATATTTA
*
16884307 TTTTTTTAATTTTAAAATATTTTTAAAATGC
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC
16884338 TTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC
16884369 TTTTTTT
1 TTTTTTT
16884376 TTTTAATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (31 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:16884389 original size:44 final size:46
Alignment explanation
Indices: 16884338--16884428 Score: 150
Period size: 44 Copynumber: 2.0 Consensus size: 46
16884328 TTTAAAATGC
*
16884338 TTTTTTTAATTTTAAAATATTTTTAAAATACT-TTTTT-TTTTTAA
1 TTTTTTTAATTTAAAAATATTTTTAAAATACTATTTTTATTTTTAA
16884382 TTTTTTTAATTTAAAAATATTTTTAAAATACTATTTTTAATTTTTAA
1 TTTTTTTAATTTAAAAATATTTTTAAAATACTATTTTT-ATTTTTAA
16884429 AATAAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
44 31 0.72
45 5 0.12
47 7 0.16
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (46 bp):
TTTTTTTAATTTAAAAATATTTTTAAAATACTATTTTTATTTTTAA
Found at i:16884439 original size:21 final size:21
Alignment explanation
Indices: 16884400--16884439 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16884390 ATTTAAAAAT
*
16884400 ATTTTTAAAATACTATTTTTA
1 ATTTTTAAAATAATATTTTTA
16884421 ATTTTTAAAATAA-ATTTTT
1 ATTTTTAAAATAATATTTTT
16884440 GGTACTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTTAAAATAATATTTTTA
Found at i:16885374 original size:19 final size:19
Alignment explanation
Indices: 16885328--16885374 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
16885318 CAATTCCCAT
16885328 ATTTTAATAATTTTAAAAA
1 ATTTTAATAATTTTAAAAA
* **
16885347 AGTAAAATAA-TTTAAAAA
1 ATTTTAATAATTTTAAAAA
16885365 ACTTTTAATA
1 A-TTTTAATA
16885375 TATATCAATT
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTTTAATAATTTTAAAAA
Found at i:16885498 original size:21 final size:21
Alignment explanation
Indices: 16885474--16885526 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
16885464 CATTGTTTCT
*
16885474 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
16885495 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
16885516 AATCTCACCGC
1 AATCTCACCGC
16885527 CACTGCTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:16887106 original size:26 final size:26
Alignment explanation
Indices: 16887049--16887120 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
16887039 ATTAAAAAGA
* *
16887049 TATTAAGAAATATAAGAAATTGTAAC
1 TATTAAGAATTATAAGAAATTATAAC
* *
16887075 TTTTAATAATTATAAGAAATTATAA-
1 TATTAAGAATTATAAGAAATTATAAC
*
16887100 TAATTAAGAATTATAAAAAAT
1 T-ATTAAGAATTATAAGAAAT
16887121 ATTAGAAACT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 1 0.03
26 37 0.97
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.36
Consensus pattern (26 bp):
TATTAAGAATTATAAGAAATTATAAC
Found at i:16887264 original size:11 final size:10
Alignment explanation
Indices: 16887243--16887309 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
16887233 TCTGGACATT
16887243 ATTTTTAATA
1 ATTTTTAATA
16887253 ATTTTTAGATA
1 ATTTTTA-ATA
*
16887264 A-GTTTAATA
1 ATTTTTAATA
*
16887273 ATTAATT-ATAA
1 ATT-TTTAAT-A
*
16887284 ATTTTAAATA
1 ATTTTTAATA
16887294 ATTATTT-ATA
1 ATT-TTTAATA
16887304 ATTTTT
1 ATTTTT
16887310 TTTAAAAAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
9 7 0.16
10 24 0.53
11 14 0.31
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:16887295 original size:21 final size:21
Alignment explanation
Indices: 16887269--16887309 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16887259 AGATAAGTTT
16887269 AATAATTAATTATAAATTTTA
1 AATAATTAATTATAAATTTTA
* *
16887290 AATAATTATTTATAATTTTT
1 AATAATTAATTATAAATTTT
16887310 TTTAAAAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AATAATTAATTATAAATTTTA
Found at i:16887812 original size:7 final size:7
Alignment explanation
Indices: 16887801--16887835 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
16887791 ATCATTATAT
*
16887801 GCCAACT
1 GCCAACC
16887808 GCCAACC
1 GCCAACC
16887815 GCCAACC
1 GCCAACC
16887822 GCCAACC
1 GCCAACC
16887829 GCCAACC
1 GCCAACC
16887836 ATTTTCCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.54, G:0.14, T:0.03
Consensus pattern (7 bp):
GCCAACC
Found at i:16888612 original size:28 final size:29
Alignment explanation
Indices: 16888552--16888612 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
16888542 TTACATGGAC
* *
16888552 TGATTATTTAACTAGTACACAAAGTATAA
1 TGATTATTTAACTAATAAACAAAGTATAA
16888581 -GATTATTTAACTACATAAAC-AA-TATAA
1 TGATTATTTAACTA-ATAAACAAAGTATAA
16888608 TGATT
1 TGATT
16888613 TTGCCTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 5 0.18
28 19 0.68
29 4 0.14
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (29 bp):
TGATTATTTAACTAATAAACAAAGTATAA
Found at i:16888730 original size:70 final size:67
Alignment explanation
Indices: 16888605--16888737 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 67
16888595 ATAAACAATA
* ** * *
16888605 TAATGATTTTGCCTTTTAACTTAATGAGTAAACATTTATCAAAGCGATGTAGTTTTGCCTTTTAA
1 TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACGACGTAGTTTTGCCTTTTAA
16888670 CT
66 CT
*
16888672 TAATGATTTTGACTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGACGTGGTTTTGCCTTT
1 TAATGATTTTGACTTTTAAC-TTA-AAAA-GTAAACATTTATCAAAACGACGTAGTTTTGCCTTT
16888737 T
63 T
16888738 CTTATTCGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
67 19 0.33
68 3 0.05
69 2 0.04
70 33 0.58
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (67 bp):
TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACGACGTAGTTTTGCCTTTTAA
CT
Found at i:16897253 original size:14 final size:15
Alignment explanation
Indices: 16897227--16897257 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
16897217 GTGTTACGAT
16897227 TTAATTGAAAATTAA
1 TTAATTGAAAATTAA
16897242 TTAATT-AAAATTAA
1 TTAATTGAAAATTAA
16897256 TT
1 TT
16897258 TAATAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATTGAAAATTAA
Found at i:16897260 original size:15 final size:16
Alignment explanation
Indices: 16897225--16897261 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
16897215 AGGTGTTACG
16897225 ATTTAATTGAAAATTA
1 ATTTAATTGAAAATTA
16897241 A-TTAATT-AAAATTA
1 ATTTAATTGAAAATTA
16897255 ATTTAAT
1 ATTTAAT
16897262 AAATAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 11 0.55
16 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
ATTTAATTGAAAATTA
Found at i:16908914 original size:13 final size:13
Alignment explanation
Indices: 16908896--16908929 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
16908886 TCTGAGTAAG
*
16908896 GTCACACGGTAGT
1 GTCACACGGCAGT
*
16908909 GTCACACAGCAGT
1 GTCACACGGCAGT
16908922 GTCACACG
1 GTCACACG
16908930 TAAGTGTGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (13 bp):
GTCACACGGCAGT
Found at i:16911778 original size:13 final size:14
Alignment explanation
Indices: 16911746--16911789 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
16911736 ATATAATATA
*
16911746 TAAAAATTAAAAAT
1 TAAAAATTAAAAAC
*
16911760 TAAAAATTAAATAC
1 TAAAAATTAAAAAC
16911774 TAAAAAATTGAAAAAC
1 T-AAAAATT-AAAAAC
16911790 GAGTCAAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.52
15 7 0.28
16 5 0.20
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (14 bp):
TAAAAATTAAAAAC
Found at i:16911787 original size:7 final size:7
Alignment explanation
Indices: 16911746--16911770 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
16911736 ATATAATATA
16911746 TAAAAAT
1 TAAAAAT
16911753 TAAAAAT
1 TAAAAAT
16911760 TAAAAAT
1 TAAAAAT
16911767 TAAA
1 TAAA
16911771 TACTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAAAAT
Found at i:16913190 original size:3 final size:3
Alignment explanation
Indices: 16913182--16913218 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
16913172 TATTTTAGTG
* *
16913182 TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
16913219 GACTATCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:16913378 original size:16 final size:16
Alignment explanation
Indices: 16913353--16913385 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
16913343 ATACTCATTT
16913353 TATATATATATTTATA
1 TATATATATATTTATA
*
16913369 TATATGTATATTTATA
1 TATATATATATTTATA
16913385 T
1 T
16913386 TTTTTTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TATATATATATTTATA
Found at i:16914663 original size:23 final size:24
Alignment explanation
Indices: 16914637--16914686 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
16914627 AAAATACCTC
**
16914637 AAGTATCGTATTGA-AAAAAACTT
1 AAGTATCAAATTGAGAAAAAACTT
16914660 AAGTATCAAATTGAGGAAAAAACTT
1 AAGTATCAAATTGA-GAAAAAACTT
16914685 AA
1 AA
16914687 TTACTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (24 bp):
AAGTATCAAATTGAGAAAAAACTT
Found at i:16920130 original size:19 final size:20
Alignment explanation
Indices: 16920082--16920133 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
16920072 CTTAGAATTT
16920082 TTTTCATTCA-TTATCAAAA
1 TTTTCATTCATTTATCAAAA
* *
16920101 TTTGGCATTCATTTAT-AAAG
1 TTT-TCATTCATTTATCAAAA
16920121 TTTTCATTCATTT
1 TTTTCATTCATTT
16920134 TTAGTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 12 0.43
21 4 0.14
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCATTCATTTATCAAAA
Found at i:16922072 original size:19 final size:21
Alignment explanation
Indices: 16922034--16922088 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
16922024 AACCCGATAG
16922034 GTATCGATAATTTTTCAT-AA
1 GTATCGATAATTTTTCATAAA
*
16922054 GTATTGATAATTTTT-ATAAA
1 GTATCGATAATTTTTCATAAA
16922074 GTATCGAT-ATTTTTC
1 GTATCGATAATTTTTC
16922089 TATTGGTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (21 bp):
GTATCGATAATTTTTCATAAA
Found at i:16925852 original size:29 final size:28
Alignment explanation
Indices: 16925814--16925912 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 28
16925804 TCATCGGTGA
*
16925814 ATGAAAAGGGATAGCTTTGGCTACCGAAT
1 ATGAAAAGGGATAGCTTTGGCTATC-AAT
*
16925843 ATGAAAAGGGATAGCTTCGGCTATCAAAT
1 ATGAAAAGGGATAGCTTTGGCTATC-AAT
16925872 ATGAAAAGGGATAG-TTTCGGCTATCAATT
1 ATGAAAAGGGATAGCTTT-GGCTATCAA-T
16925901 ATGAAAAGGGAT
1 ATGAAAAGGGAT
16925913 GGTGATGACT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
28 4 0.06
29 60 0.94
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.25
Consensus pattern (28 bp):
ATGAAAAGGGATAGCTTTGGCTATCAAT
Found at i:16925924 original size:29 final size:29
Alignment explanation
Indices: 16925840--16925944 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 29
16925830 TTGGCTACCG
* *
16925840 AATATGAAAAGGGATAGCT-TCGGCTATCA
1 AATATGAAAAGGGAT-GGTATCGACTATCA
* * *
16925869 AATATGAAAAGGGATAGTTTCGGCTATCA
1 AATATGAAAAGGGATGGTATCGACTATCA
* *
16925898 ATTATGAAAAGGGATGGTGAT-GACTATTGA
1 AATATGAAAAGGGATGGT-ATCGACTA-TCA
*
16925928 ACTATGAAAAGGGATGG
1 AATATGAAAAGGGATGG
16925945 CCCCTGTAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
28 1 0.02
29 45 0.69
30 19 0.29
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.26
Consensus pattern (29 bp):
AATATGAAAAGGGATGGTATCGACTATCA
Found at i:16929713 original size:23 final size:23
Alignment explanation
Indices: 16929670--16929714 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16929660 AAGAATCTAG
* *
16929670 AGCTTATTTAGAGAATTATACAC
1 AGCTTATTCAGAGAATCATACAC
16929693 AGCTTATTCAGATG-ATCATACA
1 AGCTTATTCAGA-GAATCATACA
16929715 TGAAGCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (23 bp):
AGCTTATTCAGAGAATCATACAC
Found at i:16932222 original size:30 final size:30
Alignment explanation
Indices: 16932186--16932314 Score: 134
Period size: 30 Copynumber: 4.3 Consensus size: 30
16932176 GGCTATCGAT
*
16932186 TATGAAAAGGGATGGTGACGATCATCGAAC
1 TATGAAAAGGGATGGTGACGATCATCAAAC
* *** * *
16932216 TATGAAAAGGGATAGCTTTGGCT-ATCAAAT
1 TATGAAAAGGGAT-GGTGACGATCATCAAAC
*
16932246 TATGAAAAGGGATGGTGACGATCATCGAAC
1 TATGAAAAGGGATGGTGACGATCATCAAAC
* * * *
16932276 AATGAAAAGAGATGGTGACGACCATCAAAT
1 TATGAAAAGGGATGGTGACGATCATCAAAC
16932306 TATGAAAAG
1 TATGAAAAG
16932315 ATATAGTTTC
Statistics
Matches: 77, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
29 4 0.05
30 69 0.90
31 4 0.05
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGATCATCAAAC
Found at i:16932271 original size:60 final size:59
Alignment explanation
Indices: 16932157--16932284 Score: 211
Period size: 60 Copynumber: 2.2 Consensus size: 59
16932147 ATTATCGATG
* *
16932157 AATGAAAATGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGATCATCGAAC
1 AATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGATCATCGAAC
* *
16932216 TATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACGATCATCGAAC
1 AATGAAAAGGGATAGCTTCGGCTATC-AATTATGAAAAGGGATGGTGACGATCATCGAAC
16932276 AATGAAAAG
1 AATGAAAAG
16932285 AGATGGTGAC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
59 23 0.37
60 40 0.63
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (59 bp):
AATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGATCATCGAAC
Found at i:16932303 original size:60 final size:60
Alignment explanation
Indices: 16932184--16932314 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
16932174 TCGGCTATCG
* * ** * *
16932184 ATTATGAAAAGGGATGGTGACGATCATCGAACTATGAAAAGGGATAGCTTTGGCTATCAA
1 ATTATGAAAAGGGATGGTGACGATCATCGAACAATGAAAAGAGATAGCTACGACCATCAA
*
16932244 ATTATGAAAAGGGATGGTGACGATCATCGAACAATGAAAAGAGAT-GGTGACGACCATCAA
1 ATTATGAAAAGGGATGGTGACGATCATCGAACAATGAAAAGAGATAGCT-ACGACCATCAA
16932304 ATTATGAAAAG
1 ATTATGAAAAG
16932315 ATATAGTTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
59 2 0.03
60 61 0.97
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.22
Consensus pattern (60 bp):
ATTATGAAAAGGGATGGTGACGATCATCGAACAATGAAAAGAGATAGCTACGACCATCAA
Found at i:16932363 original size:90 final size:90
Alignment explanation
Indices: 16932158--16932380 Score: 254
Period size: 90 Copynumber: 2.5 Consensus size: 90
16932148 TTATCGATGA
* * * *
16932158 ATGAAAATGGATAGCTTCGGCTATCG-ATTATGAAAAGGGATGGTGACGATCATCGAACTATGAA
1 ATGAAAAGGGATAGCTTCGGTTATCGAATTATGAAAAGGGATGGTGACGACCATCAAACTATGAA
*
16932222 AAGGGATAGCTTTGGCTATCAAATT
66 AAGAGATAGCTTTGGCTATCAAATT
* * * * ** * *
16932247 ATGAAAAGGGAT-GGTGACGATCATCGAACAATGAAAAGAGATGGTGACGACCATCAAATTATGA
1 ATGAAAAGGGATAGCT-TCGGTTATCGAATTATGAAAAGGGATGGTGACGACCATCAAACTATGA
* * *
16932311 AAAGATATAG-TTTCGGCTGTCGAATT
65 AAAGAGATAGCTTT-GGCTATCAAATT
*
16932337 ATGAAAAGGGATAACTTCGGTTATCGAATTATGAAAAGGGATGG
1 ATGAAAAGGGATAGCTTCGGTTATCGAATTATGAAAAGGGATGG
16932381 GTCAACCATT
Statistics
Matches: 106, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
88 2 0.02
89 20 0.19
90 83 0.78
91 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.25
Consensus pattern (90 bp):
ATGAAAAGGGATAGCTTCGGTTATCGAATTATGAAAAGGGATGGTGACGACCATCAAACTATGAA
AAGAGATAGCTTTGGCTATCAAATT
Found at i:16932375 original size:30 final size:30
Alignment explanation
Indices: 16932303--16932378 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
16932293 ACGACCATCA
** ** *
16932303 AATTATGAAAAGATATAGTTTCGGCTGTCG
1 AATTATGAAAAGGGATAACTTCGGCTATCG
*
16932333 AATTATGAAAAGGGATAACTTCGGTTATCG
1 AATTATGAAAAGGGATAACTTCGGCTATCG
16932363 AATTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
16932379 GGGTCAACCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (30 bp):
AATTATGAAAAGGGATAACTTCGGCTATCG
Found at i:16937811 original size:52 final size:52
Alignment explanation
Indices: 16937725--16937828 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
16937715 CGAGGTGTTC
* *
16937725 GGGTTAGCACCTAATTCCATAATATACTGAAAAATCAGTAGCTAATAATTAT
1 GGGTCAGCACCTAATTCCATAATATACTGAAAAATCAGTAACTAATAATTAT
* *
16937777 GGGTCAGCACCTAATTCCATAATATACTGGAAAATTAGTAACTAATAATTAT
1 GGGTCAGCACCTAATTCCATAATATACTGAAAAATCAGTAACTAATAATTAT
16937829 TAAATTCCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (52 bp):
GGGTCAGCACCTAATTCCATAATATACTGAAAAATCAGTAACTAATAATTAT
Found at i:16946419 original size:32 final size:32
Alignment explanation
Indices: 16946378--16946444 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
16946368 AGTGAGCAGG
* *
16946378 TAAGGTTCTTAGTCCTTCTATAAATATAGGGA
1 TAAGGTTCTTAGTCCTTCGATAAACATAGGGA
*
16946410 TAAGGTTCTTAGTCCTTCGATAAACGTAGGGA
1 TAAGGTTCTTAGTCCTTCGATAAACATAGGGA
16946442 TAA
1 TAA
16946445 AGAGAATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (32 bp):
TAAGGTTCTTAGTCCTTCGATAAACATAGGGA
Found at i:16947351 original size:27 final size:27
Alignment explanation
Indices: 16947280--16947383 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
16947270 GTTAATTGAT
* *
16947280 ACATTAAACACAGGATAGTCCAAATGGG
1 ACATTAAACACAGGATAGTCC-AACGGA
* *
16947308 ATATTAAACAC-GAGATAGTCCGACGGA
1 ACATTAAACACAG-GATAGTCCAACGGA
* * *
16947335 ACATTAAACATAGGATAGTCTAACAGA
1 ACATTAAACACAGGATAGTCCAACGGA
* *
16947362 ACACTAAACACAGGATGGTCCA
1 ACATTAAACACAGGATAGTCCA
16947384 TCGAGATGGT
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
27 42 0.69
28 19 0.31
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.18
Consensus pattern (27 bp):
ACATTAAACACAGGATAGTCCAACGGA
Found at i:16947477 original size:27 final size:26
Alignment explanation
Indices: 16947447--16947552 Score: 97
Period size: 27 Copynumber: 4.0 Consensus size: 26
16947437 TGGCATCATA
16947447 GATAGTTCGACGAGACATTAAACATCG
1 GATAGTTCGACGAGACATTAAACA-CG
* * *
16947474 GATAGTTTGATGGGACATTAAACACGG
1 GATAGTTCGACGAGACATTAAACAC-G
*
16947501 GATA-ATCTGACGAGACATTAAACACG
1 GATAGTTC-GACGAGACATTAAACACG
* * * *
16947527 AGATAGTCCAACGAAACACTAAACAC
1 -GATAGTTCGACGAGACATTAAACAC
16947553 AGGACAGTCT
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 59 0.94
28 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.20
Consensus pattern (26 bp):
GATAGTTCGACGAGACATTAAACACG
Found at i:16947578 original size:180 final size:181
Alignment explanation
Indices: 16947210--16947651 Score: 457
Period size: 181 Copynumber: 2.4 Consensus size: 181
16947200 CTGCTGGGAC
* * * * *
16947210 GGTAAACACGGGTTAGATTGTGTAAGACCATCGCTAAAAGACATTATGGCGTCATAGATAGTTAA
1 GGTAAACACGGGGTATATCGTGTAAGACCATAGCTAAAAGACATTATGGCATCATAGATAGTTAA
* * * *
16947275 TTGATACATTAAACACAGGATAGTCCAAATGGGATATTAAACACGAGATAGTCCGACGGAACATT
66 TCGAGACATTAAACACAGGATAGTCCAAATGGGACATTAAACACGAGATAATCCGACGGAACATT
* * ** *
16947340 AAACATAGGATAGTCTAACAGAACACTAAACACAGGATGGTCCATCGAGAT
131 AAACAGAGGATAGTCCAACAGAACACTAAACACAGGACAGTCCACCGAGAT
* * * *
16947391 GGTAAACACGGGGTATATCGTGTAAGACTATAGCTACAAGACGTTATGGCATCATAGATAGTTCG
1 GGTAAACACGGGGTATATCGTGTAAGACCATAGCTAAAAGACATTATGGCATCATAGATAGTT-A
*** * *
16947456 A-CGAGACATTAAACATC-GGATAGT-TTGATGGGACATTAAACACGGGATAATCTGAC-GAGAC
65 ATCGAGACATTAAACA-CAGGATAGTCCAAATGGGACATTAAACACGAGATAATCCGACGGA-AC
*
16947517 ATTAAACACGA-GATAGTCCAAC-GAAACACTAAACACAGGACAGTCTACCGAGAT
128 ATTAAACA-GAGGATAGTCCAACAG-AACACTAAACACAGGACAGTCCACCGAGAT
* * * * * * * * *
16947571 GGTAAACATAGGAGTATATCGTGAAATACCATAGTTGAAAGACACTATGGCATCGTAAATAG-TA
1 GGTAAACA-CGGGGTATATCGTGTAAGACCATAGCTAAAAGACATTATGGCATCATAGATAGTTA
* *
16947635 CATCGGGACAGTAAACA
65 -ATCGAGACATTAAACA
16947652 AGGGGATCCT
Statistics
Matches: 214, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
179 3 0.01
180 81 0.38
181 128 0.60
182 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (181 bp):
GGTAAACACGGGGTATATCGTGTAAGACCATAGCTAAAAGACATTATGGCATCATAGATAGTTAA
TCGAGACATTAAACACAGGATAGTCCAAATGGGACATTAAACACGAGATAATCCGACGGAACATT
AAACAGAGGATAGTCCAACAGAACACTAAACACAGGACAGTCCACCGAGAT
Found at i:16952988 original size:20 final size:20
Alignment explanation
Indices: 16952941--16952990 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
16952931 GTGTGACCCC
16952941 TGTTTCAAAATTTTTCATGTT
1 TGTTTC-AAATTTTTCATGTT
*
16952962 T-TCTCAAATTTTTCTAT-TT
1 TGTTTCAAATTTTTC-ATGTT
16952981 TGTTTCAAAT
1 TGTTTCAAAT
16952991 GGATCCTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 12 0.48
20 12 0.48
21 1 0.04
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.58
Consensus pattern (20 bp):
TGTTTCAAATTTTTCATGTT
Found at i:16955331 original size:20 final size:20
Alignment explanation
Indices: 16955308--16955361 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
16955298 TAAAATTTTG
16955308 AATCTATCGATACTCAACAA
1 AATCTATCGATACTCAACAA
* **
16955328 AATCTACCGATACTTGACAA
1 AATCTATCGATACTCAACAA
**
16955348 AAAGTATCGATACT
1 AATCTATCGATACT
16955362 AGATCAGTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (20 bp):
AATCTATCGATACTCAACAA
Found at i:16958398 original size:100 final size:100
Alignment explanation
Indices: 16958294--16958496 Score: 275
Period size: 100 Copynumber: 2.0 Consensus size: 100
16958284 TTTTTTATAT
* ** *
16958294 AAATATATTTAACAAAATGATAGATATA-AAAAAATATAATTTCATTATATAATTACATATTTAT
1 AAATATATTTAACAAAATGATACATATATAAAAAATAT-ATTTCATTATATAATTACATATACAC
16958358 TAATTTAGTTATATAAAT-AAAGAAATTATTAATTAA
65 TAATTTAGTTATATAAATAAAAG-AATTATTAATTAA
* * *
16958394 AAATATTTTTAACATAATGATACATATATAAAAAATATATTTTATTATATAATTACATATACACT
1 AAATATATTTAACAAAATGATACATATATAAAAAATATATTTCATTATATAATTACATATACACT
* * * *
16958459 ATTTTATTTATATAAATAAAAGAGTTATTAATTGA
66 AATTTAGTTATATAAATAAAAGAATTATTAATTAA
16958494 AAA
1 AAA
16958497 GATAAATTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
100 77 0.86
101 13 0.14
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (100 bp):
AAATATATTTAACAAAATGATACATATATAAAAAATATATTTCATTATATAATTACATATACACT
AATTTAGTTATATAAATAAAAGAATTATTAATTAA
Found at i:16958546 original size:13 final size:13
Alignment explanation
Indices: 16958528--16958554 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16958518 ACAATATATT
16958528 TATTAATTAAAAA
1 TATTAATTAAAAA
16958541 TATTAATTAAAAA
1 TATTAATTAAAAA
16958554 T
1 T
16958555 TAAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:16961346 original size:18 final size:18
Alignment explanation
Indices: 16961323--16961357 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16961313 GAAAACACCA
16961323 TCATGATCAAGTTCATGG
1 TCATGATCAAGTTCATGG
*
16961341 TCATGATCATGTTCATG
1 TCATGATCAAGTTCATG
16961358 ATGTGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
TCATGATCAAGTTCATGG
Found at i:16975302 original size:31 final size:31
Alignment explanation
Indices: 16975267--16975327 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
16975257 TTCAATTTAG
16975267 TCACTAACATTTTAGATCATTTCTATTTTGA
1 TCACTAACATTTTAGATCATTTCTATTTTGA
* ** *
16975298 TCACTTATGTTTTAGATCGTTTCTATTTTG
1 TCACTAACATTTTAGATCATTTCTATTTTG
16975328 GTCAGTCTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.52
Consensus pattern (31 bp):
TCACTAACATTTTAGATCATTTCTATTTTGA
Found at i:16975326 original size:16 final size:16
Alignment explanation
Indices: 16975275--16975326 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
16975265 AGTCACTAAC
16975275 ATTTTAGATCATTTCT
1 ATTTTAGATCATTTCT
* *
16975291 ATTTT-GATCACTTAT
1 ATTTTAGATCATTTCT
* *
16975306 GTTTTAGATCGTTTCT
1 ATTTTAGATCATTTCT
16975322 ATTTT
1 ATTTT
16975327 GGTCAGTCTT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.21, C:0.12, G:0.10, T:0.58
Consensus pattern (16 bp):
ATTTTAGATCATTTCT
Found at i:16975804 original size:30 final size:31
Alignment explanation
Indices: 16975749--16975815 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
16975739 TTTAACGGAA
16975749 AGTGACCAAAAGAAAAATAATCTAAAACGTG
1 AGTGACCAAAAGAAAAATAATCTAAAACGTG
* * * *
16975780 AGTGACCAAAA-TAGAATGATCTAAAACGTT
1 AGTGACCAAAAGAAAAATAATCTAAAACGTG
16975810 AGTGAC
1 AGTGAC
16975816 TTAATTGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 21 0.66
31 11 0.34
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGTGACCAAAAGAAAAATAATCTAAAACGTG
Found at i:16979353 original size:35 final size:35
Alignment explanation
Indices: 16979307--16979378 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
16979297 CATATATATA
16979307 ATTATAATGCATATAATCTAAATTATAAATACCAT
1 ATTATAATGCATATAATCTAAATTATAAATACCAT
*
16979342 ATTATAATGCATATAATCTAAATTATAAATTCCAT
1 ATTATAATGCATATAATCTAAATTATAAATACCAT
16979377 AT
1 AT
16979379 GAACTAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTATAATGCATATAATCTAAATTATAAATACCAT
Found at i:16981127 original size:57 final size:58
Alignment explanation
Indices: 16981058--16981167 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 58
16981048 TCATTTTTCA
* *
16981058 TTTTCATTTTCATCTTGGAGAAAACCATATTCATTTCCAAATGATTCC-ATTTCTCCT
1 TTTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTCCTATTTCTCCT
* *
16981115 TTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGTTTCCTATTT
1 TTTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTCCTATTT
16981168 ATTCATTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 44 0.92
58 4 0.08
ACGTcount: A:0.28, C:0.20, G:0.06, T:0.45
Consensus pattern (58 bp):
TTTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTCCTATTTCTCCT
Found at i:16981177 original size:57 final size:55
Alignment explanation
Indices: 16981049--16981177 Score: 159
Period size: 57 Copynumber: 2.3 Consensus size: 55
16981039 ATTTTTAGGT
* *
16981049 CATTTTTCATTTTCATTTTCATCTTGGAGAAAACCATATTCATTTCCAAATGATTC
1 CATTTTTCA-TTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTC
* * * *
16981105 CATTTCTCCTTTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGTTTC
1 CATTT-TTC-ATTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTC
16981162 CTATTTATTCATTTCA
1 C-ATTT-TTCATTTCA
16981178 CCATTACTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
56 5 0.08
57 50 0.82
58 6 0.10
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.47
Consensus pattern (55 bp):
CATTTTTCATTTCATTTTCATCTTGAAGAAAACCATAATCATTTCCAAATGATTC
Found at i:16988399 original size:33 final size:33
Alignment explanation
Indices: 16988357--16988422 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
16988347 TCATGTCGTG
16988357 ACAAAGAACAAAATTCTAATGTAGGAATTTGCT
1 ACAAAGAACAAAATTCTAATGTAGGAATTTGCT
16988390 ACAAAGAACAAAATTCTAATGTAGGAATTTGCT
1 ACAAAGAACAAAATTCTAATGTAGGAATTTGCT
16988423 CTTGACGTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (33 bp):
ACAAAGAACAAAATTCTAATGTAGGAATTTGCT
Found at i:16994462 original size:29 final size:29
Alignment explanation
Indices: 16994421--16994479 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
16994411 AAATAATAAT
*
16994421 GAGAGTAAACTTGCAAGTTGTTTCTCATA
1 GAGAGTAAACTTGCAAGTTGTTTCCCATA
16994450 GAGAGTAAACTTGCAAGTTGTTTCCCATA
1 GAGAGTAAACTTGCAAGTTGTTTCCCATA
16994479 G
1 G
16994480 CCATCGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (29 bp):
GAGAGTAAACTTGCAAGTTGTTTCCCATA
Found at i:16995849 original size:23 final size:23
Alignment explanation
Indices: 16995823--16995868 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
16995813 AGTCTTTTTA
16995823 TTAATATATGAATATTATGTTTG
1 TTAATATATGAATATTATGTTTG
16995846 TTAATATATGAATATTATGTTTG
1 TTAATATATGAATATTATGTTTG
16995869 GATATTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (23 bp):
TTAATATATGAATATTATGTTTG
Found at i:16996113 original size:21 final size:21
Alignment explanation
Indices: 16996074--16996114 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16996064 TAAAATAGAT
*
16996074 TATATATTATTTTTATAGTAC
1 TATATATTATATTTATAGTAC
16996095 TATATATTATGATTT-TAGTA
1 TATATATTAT-ATTTATAGTA
16996115 AATTCATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (21 bp):
TATATATTATATTTATAGTAC
Found at i:16996156 original size:17 final size:18
Alignment explanation
Indices: 16996131--16996176 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
16996121 TATAAGAATA
*
16996131 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
16996148 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
16996166 ATTAAATTATA
1 ATTAAATTATA
16996177 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:16996424 original size:45 final size:44
Alignment explanation
Indices: 16996336--16996428 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 44
16996326 ATTACAACAT
16996336 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
16996380 CATTCCATTCAACCAAACA-ATTA-AATTACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACA--AGAA-TACTATTACAGTTCTATTC
16996425 CATT
1 CATT
16996429 ACACCTCTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
43 1 0.02
44 21 0.46
45 24 0.52
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:16996431 original size:16 final size:16
Alignment explanation
Indices: 16996410--16996465 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
16996400 TTAAATTACT
*
16996410 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
16996426 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
*
16996442 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
16996458 ATTACAGC
1 ATTACAGC
16996466 GAATCAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.29, C:0.30, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:17004800 original size:16 final size:16
Alignment explanation
Indices: 17004776--17004816 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
17004766 TTTTTTTTTC
17004776 AAAAAAAGAAG-AAGA
1 AAAAAAAGAAGAAAGA
17004791 AAAAACAAG-AGAAAGA
1 AAAAA-AAGAAGAAAGA
17004807 AAAAAAAGAA
1 AAAAAAAGAA
17004817 AAAAAAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAGAAAGA
Found at i:17004823 original size:13 final size:13
Alignment explanation
Indices: 17004776--17004823 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
17004766 TTTTTTTTTC
*
17004776 AAAAAAAGAAGAA
1 AAAAAAAAAAGAA
*
17004789 GAAAAAACAAGAGAA
1 -AAAAAA-AAAAGAA
*
17004804 AGAAAAAAAAGAA
1 AAAAAAAAAAGAA
17004817 AAAAAAA
1 AAAAAAA
17004824 CATGGAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 12 0.43
14 11 0.39
15 5 0.18
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:17016789 original size:11 final size:11
Alignment explanation
Indices: 17016773--17016804 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
17016763 CTCTAATATT
17016773 CTTTCAAATTC
1 CTTTCAAATTC
17016784 CTTTCAAATTC
1 CTTTCAAATTC
*
17016795 CTCTCAAATT
1 CTTTCAAATT
17016805 TCTATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (11 bp):
CTTTCAAATTC
Found at i:17018652 original size:18 final size:18
Alignment explanation
Indices: 17018629--17018671 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
17018619 TGCCAGGTGC
* *
17018629 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
17018647 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
17018665 GTTTCCT
1 GTATCCT
17018672 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:17018958 original size:21 final size:22
Alignment explanation
Indices: 17018912--17018959 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
17018902 CCAACACCGA
*
17018912 CAACCAGATCCCCTACCGGTTG
1 CAACCAGATCCCCTACCGGTAG
17018934 -AACCAGAATCCCCT-CCGG-AG
1 CAACCAG-ATCCCCTACCGGTAG
17018954 CAACCA
1 CAACCA
17018960 CAACCTCCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 15 0.65
22 7 0.30
ACGTcount: A:0.29, C:0.42, G:0.17, T:0.12
Consensus pattern (22 bp):
CAACCAGATCCCCTACCGGTAG
Found at i:17019146 original size:49 final size:49
Alignment explanation
Indices: 17019092--17019261 Score: 295
Period size: 49 Copynumber: 3.5 Consensus size: 49
17019082 GTTTATATTA
17019092 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
17019141 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
* * *
17019190 ATGTAATAAAATACAAAATAGTTCATTTTTAATATTTTGATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
17019239 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
17019262 AATATTCTTA
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
Found at i:17020731 original size:41 final size:41
Alignment explanation
Indices: 17020664--17020772 Score: 168
Period size: 41 Copynumber: 2.7 Consensus size: 41
17020654 TTTCGGGGCA
* *
17020664 TTAGCGGCGTTTTTGAAAAAGTGCCGCTATTGCTCAT-GCTT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-TGGCTT
17020705 TTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTCTGGCTT
1 TTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCTGGCTT
17020746 TTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGC
17020773 AAAAATATTG
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
40 4 0.06
41 56 0.89
42 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGCTT
Found at i:17021057 original size:14 final size:15
Alignment explanation
Indices: 17021027--17021059 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
17021017 AAGGTTTATA
17021027 GATTATGGAATTAGG
1 GATTATGGAATTAGG
17021042 GATTATGGAA-TAGG
1 GATTATGGAATTAGG
17021056 GATT
1 GATT
17021060 TTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:17021192 original size:14 final size:14
Alignment explanation
Indices: 17021162--17021207 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
17021152 TAAATAAGGT
*
17021162 TTAGGGGTTAGTAG
1 TTAGGGGTTAGGAG
*
17021176 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGAG
* *
17021190 TTAGAGGTTAAGAG
1 TTAGGGGTTAGGAG
17021204 TTAG
1 TTAG
17021208 TGATTTAAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (14 bp):
TTAGGGGTTAGGAG
Found at i:17021206 original size:21 final size:21
Alignment explanation
Indices: 17021162--17021207 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
17021152 TAAATAAGGT
* *
17021162 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGTAGTTAAGAG
17021183 TTAGGGGTTAG-AGGTTAAGAG
1 TTAGGGGTTAGTA-GTTAAGAG
17021204 TTAG
1 TTAG
17021208 TGATTTAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAGTAGTTAAGAG
Found at i:17021693 original size:39 final size:39
Alignment explanation
Indices: 17021611--17021693 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
17021601 TTTTATATTT
* *
17021611 AAAAATAAGCATTAGCGGCGCTTTTCAGAAAACGCCGCT
1 AAAAATAAGCATTAGCGGCGCTTTTCAGAAAACGCAGCA
* * * *
17021650 AAAAATGAGCATTAGTGGCG-TTTTTAGAAAAGCGCATCA
1 AAAAATAAGCATTAGCGGCGCTTTTCAGAAAA-CGCAGCA
17021689 AAAAA
1 AAAAA
17021694 CCTAAGCCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 10 0.27
39 27 0.73
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (39 bp):
AAAAATAAGCATTAGCGGCGCTTTTCAGAAAACGCAGCA
Found at i:17022603 original size:38 final size:38
Alignment explanation
Indices: 17022523--17022604 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 38
17022513 GGTTACAAAC
* * * *
17022523 TTTATATGTTTTTTATATGTTTATCTCACAAATTTTCT
1 TTTATCTGTTTTTTACATGTTTATCTCACAAAGTTTCG
*
17022561 TTTATCTGTTTTTTACATGTTTATCTCACAAAGTTTGG
1 TTTATCTGTTTTTTACATGTTTATCTCACAAAGTTTCG
17022599 TTTATC
1 TTTATC
17022605 AATTGTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.12, G:0.09, T:0.57
Consensus pattern (38 bp):
TTTATCTGTTTTTTACATGTTTATCTCACAAAGTTTCG
Found at i:17029100 original size:18 final size:17
Alignment explanation
Indices: 17029067--17029105 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
17029057 TTGTATAAAT
17029067 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
17029085 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
17029102 TGTG
1 TGTG
17029106 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:17029223 original size:8 final size:8
Alignment explanation
Indices: 17029210--17029238 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
17029200 CACTAGAGAC
17029210 CAGTGTTA
1 CAGTGTTA
17029218 CAGTGTTA
1 CAGTGTTA
17029226 CAGTGTTA
1 CAGTGTTA
17029234 CAGTG
1 CAGTG
17029239 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:17029351 original size:23 final size:23
Alignment explanation
Indices: 17029324--17029399 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
17029314 AGTGTTATTG
17029324 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
17029347 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
17029370 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
17029393 ATCAGTG
1 ATCAGTG
17029400 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:17032912 original size:43 final size:43
Alignment explanation
Indices: 17032865--17033064 Score: 283
Period size: 43 Copynumber: 4.7 Consensus size: 43
17032855 AGAAGCGTCA
* * ***
17032865 CTAAAGGTCATGTTCTTTAGCGGCGTTTATGAGAAAAGCATTG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCG
*
17032908 CTAAAGGTCATGTTCTTTAGCGGCATTTGTGACAAAAGCGCCG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCG
* *
17032951 CTAAAAGTCATGTTCTTTAGTGGCGTTTGTGACAAAAGCGCCG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCG
* * *
17032994 CTAAAAGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCA
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCG
**
17033037 CTAAAGGTCATGGCCTTTAGCGGCGTTT
1 CTAAAGGTCATGTTCTTTAGCGGCGTTT
17033065 TTTCACATAA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCG
Found at i:17037275 original size:25 final size:26
Alignment explanation
Indices: 17037240--17037290 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
17037230 TTTTTGGTTA
* *
17037240 ATAACATTATA-AAAATAGTATATTT
1 ATAACAGTATACAAAACAGTATATTT
17037265 ATAACAGTATACTAAAACAGTATATT
1 ATAACAGTATAC-AAAACAGTATATT
17037291 AAAACAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.45
27 12 0.55
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (26 bp):
ATAACAGTATACAAAACAGTATATTT
Found at i:17037288 original size:27 final size:27
Alignment explanation
Indices: 17037251--17037365 Score: 91
Period size: 27 Copynumber: 4.5 Consensus size: 27
17037241 TAACATTATA
* * *
17037251 AAAATAGTATATTTATAACAGTATACT
1 AAAACAGTATATTTAAAACAGTATATT
*
17037278 AAAACAGTATA-TTAAAACAATATATTT
1 AAAACAGTATATTTAAAACAGTATA-TT
* * *
17037305 ATAACAGTACA-TTAAAATAGTATATT
1 AAAACAGTATATTTAAAACAGTATATT
* *
17037331 ---ACA-AAT-TTTATAACAGTATATT
1 AAAACAGTATATTTAAAACAGTATATT
17037353 AAAACAGTATATT
1 AAAACAGTATATT
17037366 ACATTAAAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
22 14 0.21
23 3 0.04
25 3 0.04
26 15 0.22
27 33 0.49
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (27 bp):
AAAACAGTATATTTAAAACAGTATATT
Found at i:17037302 original size:13 final size:13
Alignment explanation
Indices: 17037251--17037366 Score: 105
Period size: 13 Copynumber: 9.1 Consensus size: 13
17037241 TAACATTATA
*
17037251 AAAATAGTATATTT
1 AAAACAGTATA-TT
* *
17037265 ATAACAGTATACT
1 AAAACAGTATATT
17037278 AAAACAGTATATT
1 AAAACAGTATATT
*
17037291 AAAACAATATATTT
1 AAAACAGTATA-TT
* *
17037305 ATAACAGTACATT
1 AAAACAGTATATT
*
17037318 AAAATAGTATATT
1 AAAACAGTATATT
*
17037331 ACAA-A-T-T-TT
1 AAAACAGTATATT
*
17037340 ATAACAGTATATT
1 AAAACAGTATATT
17037353 AAAACAGTATATT
1 AAAACAGTATATT
17037366 A
1 A
17037367 CATTAAAAAT
Statistics
Matches: 82, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
9 5 0.06
10 2 0.02
11 2 0.02
12 2 0.02
13 52 0.63
14 19 0.23
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (13 bp):
AAAACAGTATATT
Found at i:17037305 original size:40 final size:38
Alignment explanation
Indices: 17037258--17037366 Score: 152
Period size: 40 Copynumber: 2.9 Consensus size: 38
17037248 ATAAAAATAG
*
17037258 TATATTTATAACAGTATACTAAAACAGTATATTAAAACAA
1 TATATTTATAACAGTATATTAAAACAGTATATT--AACAA
* *
17037298 TATATTTATAACAGTACATTAAAATAGTATATT-ACAA
1 TATATTTATAACAGTATATTAAAACAGTATATTAACAA
17037335 -AT-TTTATAACAGTATATTAAAACAGTATATTA
1 TATATTTATAACAGTATATTAAAACAGTATATTA
17037367 CATTAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
35 27 0.43
36 2 0.03
37 4 0.06
40 30 0.48
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.37
Consensus pattern (38 bp):
TATATTTATAACAGTATATTAAAACAGTATATTAACAA
Found at i:17037348 original size:35 final size:37
Alignment explanation
Indices: 17037258--17037368 Score: 154
Period size: 35 Copynumber: 3.0 Consensus size: 37
17037248 ATAAAAATAG
*
17037258 TATATTTATAACAGTATACTAAAACAGTATATTAAAACAA
1 TATATTTATAACAGTATATTAAAACAGTATATT---ACAA
* *
17037298 TATATTTATAACAGTACATTAAAATAGTATATTACAA
1 TATATTTATAACAGTATATTAAAACAGTATATTACAA
17037335 -AT-TTTATAACAGTATATTAAAACAGTATATTACA
1 TATATTTATAACAGTATATTAAAACAGTATATTACA
17037369 TTAAAAATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
35 30 0.45
36 2 0.03
37 4 0.06
40 30 0.45
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (37 bp):
TATATTTATAACAGTATATTAAAACAGTATATTACAA
Found at i:17038360 original size:18 final size:18
Alignment explanation
Indices: 17038337--17038376 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
17038327 TTTTTAAGTA
17038337 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
17038355 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
17038373 AATA
1 AATA
17038377 CTATACTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (18 bp):
AATAAAAATGTTGCAAAG
Found at i:17039238 original size:2 final size:2
Alignment explanation
Indices: 17039231--17039267 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
17039221 GTGCTGCTTT
17039231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17039268 ATTTTGTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17039529 original size:16 final size:16
Alignment explanation
Indices: 17039505--17039535 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17039495 AAACTACTTC
*
17039505 AAATTGGGTTAACAGG
1 AAATAGGGTTAACAGG
17039521 AAATAGGGTTAACAG
1 AAATAGGGTTAACAG
17039536 CAAACTCACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (16 bp):
AAATAGGGTTAACAGG
Done.