Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 64 of 207
Found at i:18452297 original size:27 final size:26
Alignment explanation
Indices: 18452279--18452329 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
18452269 TATTAGTATT
18452279 AATC-TTATATTTTAATTTAAATATG
1 AATCGTTATATTTTAATTTAAATATG
18452304 AATCTGTTATATTTTAATTGTAAATA
1 AATC-GTTATATTTTAATT-TAAATA
18452330 ATAATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.17
27 13 0.57
28 6 0.26
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (26 bp):
AATCGTTATATTTTAATTTAAATATG
Found at i:18467146 original size:14 final size:14
Alignment explanation
Indices: 18467127--18467154 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
18467117 GAAACAATAC
18467127 TAGTTATGTATTTT
1 TAGTTATGTATTTT
18467141 TAGTTATGTATTTT
1 TAGTTATGTATTTT
18467155 AATAAAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (14 bp):
TAGTTATGTATTTT
Found at i:18476219 original size:26 final size:27
Alignment explanation
Indices: 18476136--18476230 Score: 147
Period size: 27 Copynumber: 3.6 Consensus size: 27
18476126 AGACCCTAAA
* *
18476136 ATAGGGTAAAATAACTGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCT
18476163 ATAGGGTAAAATGACCGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCT
* *
18476190 ATAGGATAAAATGACCG-AATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCT
18476216 ATAGGGTAAAATGAC
1 ATAGGGTAAAATGAC
18476231 TGTTATACCC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
26 22 0.35
27 41 0.65
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCT
Found at i:18476238 original size:27 final size:27
Alignment explanation
Indices: 18476136--18476241 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
18476126 AGACCCTAAA
* *
18476136 ATAGGGTAAAATAACTGAAATACCCCT
1 ATAGGGTAAAATGACTGAAATACCCCC
* *
18476163 ATAGGGTAAAATGACCGAAATACCCCT
1 ATAGGGTAAAATGACTGAAATACCCCC
* *
18476190 ATAGGATAAAATGACCG-AATACCCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
**
18476216 ATAGGGTAAAATGACTGTTATACCCC
1 ATAGGGTAAAATGACTGAAATACCCC
18476242 TAGGTGATGA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
26 23 0.32
27 48 0.68
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.21
Consensus pattern (27 bp):
ATAGGGTAAAATGACTGAAATACCCCC
Found at i:18476893 original size:37 final size:37
Alignment explanation
Indices: 18476815--18476903 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 37
18476805 GTTACGGGAA
* * *
18476815 GGGCTTAGGCCCACACTGAACTGGACTGTTATTTTAAT
1 GGGCTAAGGCCCA-ACTGAACTGAACTGTTATTTAAAT
*
18476853 GGGCTAAGGCCCAACTTAACTGAACTGTTA-TTAAATT
1 GGGCTAAGGCCCAACTGAACTGAACTGTTATTTAAA-T
18476890 GGGCTTAA-GCCCAA
1 GGGC-TAAGGCCCAA
18476904 ACTGTAAATG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
36 4 0.09
37 26 0.58
38 15 0.33
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (37 bp):
GGGCTAAGGCCCAACTGAACTGAACTGTTATTTAAAT
Found at i:18477211 original size:17 final size:17
Alignment explanation
Indices: 18477189--18477251 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
18477179 ATTGAATCAC
18477189 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
*** *
18477206 TACATAAGTCTTTGAATCAC
1 TACATAA-T-TAAAAAT-AT
*
18477226 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
18477243 TACATAATT
1 TACATAATT
18477252 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 17 0.50
18 4 0.12
19 5 0.15
20 8 0.24
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:18477226 original size:37 final size:37
Alignment explanation
Indices: 18477180--18477254 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
18477170 ATTACCCGAA
*
18477180 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
18477217 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
18477254 T
1 T
18477255 GAAATTAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:18477432 original size:38 final size:39
Alignment explanation
Indices: 18477388--18477465 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
18477378 ACTTAAGAGT
*
18477388 TAGACTTTACTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTACTTTTAGTTTTATTGGGTTGGGTAATTGGG
*
18477426 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTACTTTTAGTTTTATTGGGTTGGGTAATTGGG
18477465 T
1 T
18477466 TGGGTTGGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 26 0.70
39 11 0.30
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (39 bp):
TAGACTTTACTTTTAGTTTTATTGGGTTGGGTAATTGGG
Found at i:18477464 original size:13 final size:13
Alignment explanation
Indices: 18477446--18477470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18477436 TTTTAGTTTT
18477446 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
18477459 ATTGGGTTGGGT
1 ATTGGGTTGGGT
18477471 TGGATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:18479132 original size:17 final size:18
Alignment explanation
Indices: 18479100--18479133 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
18479090 AATTTCTTTT
18479100 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
18479118 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
18479134 AACTGATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:18479590 original size:28 final size:29
Alignment explanation
Indices: 18479572--18479628 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
18479562 AAAATCTTAT
18479572 AATATCT-TTTACTTAATAATAAATAATA
1 AATATCTATTTACTTAATAATAAATAATA
*
18479600 AATATCTATTTACTTAAATAATAAGTAAT
1 AATATCTATTTACTT-AATAATAAATAAT
18479629 TTAAATCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.27
29 7 0.27
30 12 0.46
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (29 bp):
AATATCTATTTACTTAATAATAAATAATA
Found at i:18489742 original size:17 final size:17
Alignment explanation
Indices: 18489720--18489753 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
18489710 ACCATAGTTG
18489720 GTATCTCTTGTAAACGT
1 GTATCTCTTGTAAACGT
18489737 GTATCTCTTGTAAACGT
1 GTATCTCTTGTAAACGT
18489754 CATCGAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
GTATCTCTTGTAAACGT
Found at i:18504689 original size:13 final size:12
Alignment explanation
Indices: 18504663--18504704 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
18504653 TCTTTTTCTA
18504663 TAAAAT-TCCAT
1 TAAAATATCCAT
18504674 TAAAATATCTCAT
1 TAAAATATC-CAT
18504687 TAAAATAATCC-T
1 TAAAAT-ATCCAT
18504699 TAAAAT
1 TAAAAT
18504705 GCTAATTACC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.21
12 9 0.32
13 10 0.36
14 3 0.11
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAATATCCAT
Found at i:18505849 original size:32 final size:32
Alignment explanation
Indices: 18505813--18505884 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
18505803 TTTAAAAGAT
* *
18505813 ACATAATTATTCAACTAATATCTCTTGATTAA
1 ACATAATTATTCAAATAATATCTCTTGAATAA
* * *
18505845 ACATAACTATTCAAATAATATTTTTTGAATAA
1 ACATAATTATTCAAATAATATCTCTTGAATAA
*
18505877 TCATAATT
1 ACATAATT
18505885 CTTTGTCAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.42
Consensus pattern (32 bp):
ACATAATTATTCAAATAATATCTCTTGAATAA
Found at i:18507701 original size:26 final size:26
Alignment explanation
Indices: 18507671--18507772 Score: 120
Period size: 26 Copynumber: 3.9 Consensus size: 26
18507661 TATCATCCCT
18507671 ATTTTACCCCTTA-TAAAATTTTGACG
1 ATTTT-CCCCTTAGTAAAATTTTGACG
* *
18507697 ATTTTGCCCTTAGTAAAATTTTGACA
1 ATTTTCCCCTTAGTAAAATTTTGACG
*
18507723 ATTTTGCCCC-TAGTAAAATTTTGATG
1 ATTTT-CCCCTTAGTAAAATTTTGACG
*
18507749 ATTTCTCCCC-TGGTAAAATTTTGA
1 ATTT-TCCCCTTAGTAAAATTTTGA
18507773 GAAAATTTGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.09
26 57 0.85
27 4 0.06
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTCCCCTTAGTAAAATTTTGACG
Found at i:18507733 original size:52 final size:52
Alignment explanation
Indices: 18507671--18507772 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
18507661 TATCATCCCT
*
18507671 ATTTTACCCCTTA-TAAAATTTTGACGATTT-TGCCCTTAGTAAAATTTTGACA
1 ATTTTACCCC-TAGTAAAATTTTGACGATTTCT-CCCCTAGTAAAATTTTGACA
* * *
18507723 ATTTTGCCCCTAGTAAAATTTTGATGATTTCTCCCCTGGTAAAATTTTGA
1 ATTTTACCCCTAGTAAAATTTTGACGATTTCTCCCCTAGTAAAATTTTGA
18507773 GAAAATTTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 2 0.05
52 41 0.93
53 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (52 bp):
ATTTTACCCCTAGTAAAATTTTGACGATTTCTCCCCTAGTAAAATTTTGACA
Found at i:18510638 original size:21 final size:21
Alignment explanation
Indices: 18510614--18510683 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
18510604 CACTATAACA
18510614 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
* * * * *
18510635 GAAA-GACTCTATGGCACTATACTG
1 GAAATGA--ATA-AG-ACCATAGTT
18510659 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
18510680 GAAA
1 GAAA
18510684 GAAACTATGG
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 14 0.41
22 3 0.09
23 3 0.09
24 10 0.29
25 2 0.06
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (21 bp):
GAAATGAATAAGACCATAGTT
Found at i:18510723 original size:90 final size:90
Alignment explanation
Indices: 18510570--18510736 Score: 248
Period size: 90 Copynumber: 1.9 Consensus size: 90
18510560 TTGGCTTGAA
* * *
18510570 AAATGAATAAGACCATAGGTGAAAGACACTATGGCACTATAACAGAAATGAATAAGACCATAGTT
1 AAATGAATAAGACCATAGGTGAAAGAAACTATGGAACTATAACAGAAATAAATAAGACCATAGTT
*
18510635 GAAAGACTCTATGGCACTATACTGG
66 GAAAGACACTATGGCACTATACTGG
* *
18510660 AAATGAATAAGACCATAGTTGAAAGAAACTATGGAAAC-ATGAA-TGAAATAAATAAGACCATAG
1 AAATGAATAAGACCATAGGTGAAAGAAACTATGG-AACTAT-AACAGAAATAAATAAGACCATAG
18510723 TTGAAAGACACTAT
64 TTGAAAGACACTAT
18510737 AGCATCATGT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
90 65 0.94
91 4 0.06
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (90 bp):
AAATGAATAAGACCATAGGTGAAAGAAACTATGGAACTATAACAGAAATAAATAAGACCATAGTT
GAAAGACACTATGGCACTATACTGG
Found at i:18510728 original size:21 final size:21
Alignment explanation
Indices: 18510659--18510728 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
18510649 CACTATACTG
*
18510659 GAAATGAATAAGACCATAGTT
1 GAAATAAATAAGACCATAGTT
* * * *
18510680 GAAAGAAACTATGGAAACAT-GAAT
1 GAAATAAA-TA-AG-ACCATAG-TT
18510704 GAAATAAATAAGACCATAGTT
1 GAAATAAATAAGACCATAGTT
18510725 GAAA
1 GAAA
18510729 GACACTATAG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
21 15 0.43
22 4 0.11
23 4 0.11
24 12 0.34
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.20
Consensus pattern (21 bp):
GAAATAAATAAGACCATAGTT
Found at i:18510753 original size:45 final size:45
Alignment explanation
Indices: 18510570--18510761 Score: 223
Period size: 45 Copynumber: 4.3 Consensus size: 45
18510560 TTGGCTTGAA
* *
18510570 AAATGAATAAGACCATAGGTGAAAGACACTATGGCACTATAACAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATGACAG
* *
18510615 AAATGAATAAGACCATAGTTGAAAGACTCTATGGCACTAT-ACTGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATGAC-AG
* *
18510660 AAATGAATAAGACCATAGTTGAAAGAAACTATGGAAAC-ATGA-ATG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGG-CACTATGACA-G
* * *
18510705 AAATAAATAAGACCATAGTTGAAAGACACTATAGCA-TCATGTCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATGACAG
18510750 AAATCG-ATAAGA
1 AAAT-GAATAAGA
18510762 TCGTAGCTAA
Statistics
Matches: 126, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
44 3 0.02
45 119 0.94
46 4 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATGACAG
Found at i:18522148 original size:26 final size:26
Alignment explanation
Indices: 18522119--18522200 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 26
18522109 CCCTAGCAAT
* *
18522119 ATTTTGACGATTTTACCTCTGGTAAA
1 ATTTTGACGATTTTGCCCCTGGTAAA
* *
18522145 ATTTTGACAATATTGCCCCTGGTAAA
1 ATTTTGACGATTTTGCCCCTGGTAAA
* *
18522171 TTTTTGATGATTTTGCCCCTGGT-AA
1 ATTTTGACGATTTTGCCCCTGGTAAA
18522196 ATTTT
1 ATTTT
18522201 CAAGAAAATA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 6 0.13
26 41 0.87
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (26 bp):
ATTTTGACGATTTTGCCCCTGGTAAA
Found at i:18529503 original size:9 final size:9
Alignment explanation
Indices: 18529479--18529531 Score: 61
Period size: 9 Copynumber: 5.9 Consensus size: 9
18529469 GAGTTAAACG
*
18529479 AATCAAGTT
1 AATCGAGTT
*
18529488 ATTCGAGTT
1 AATCGAGTT
*
18529497 AAACGAGTT
1 AATCGAGTT
*
18529506 ATTCGAGTT
1 AATCGAGTT
18529515 AATCGAGTT
1 AATCGAGTT
*
18529524 ATTCGAGT
1 AATCGAGT
18529532 CAACTTGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (9 bp):
AATCGAGTT
Found at i:18529507 original size:18 final size:18
Alignment explanation
Indices: 18529484--18529531 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
18529474 AAACGAATCA
18529484 AGTTATTCGAGTTAAACG
1 AGTTATTCGAGTTAAACG
*
18529502 AGTTATTCGAGTTAATCG
1 AGTTATTCGAGTTAAACG
18529520 AGTTATTCGAGT
1 AGTTATTCGAGT
18529532 CAACTTGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (18 bp):
AGTTATTCGAGTTAAACG
Found at i:18529925 original size:17 final size:17
Alignment explanation
Indices: 18529869--18529927 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
18529859 TAATATCTAC
*
18529869 TATTTATATTATTAAAT
1 TATTTATATTATTGAAT
* *
18529886 TAAATTTCATA-TATTGTAC
1 T--ATTT-ATATTATTGAAT
18529905 TATTTATATTATTGAAT
1 TATTTATATTATTGAAT
18529922 TATTTA
1 TATTTA
18529928 ATCATATTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 3 0.09
17 17 0.52
19 10 0.30
20 3 0.09
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TATTTATATTATTGAAT
Found at i:18536101 original size:42 final size:42
Alignment explanation
Indices: 18536055--18536146 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
18536045 GTCCCAATGT
18536055 GCTCAAGCAAGTCCCTAG-TGACCCTCTAGTCAG-CCTCCATAG
1 GCTCAAGCAAGT-CCTAGATGACCCTCTAGTCAGTCCT-CATAG
* * * *
18536097 GCTCAGGCAAGTTCTTGATGACCCTCTAGTCAGTCCTTATAG
1 GCTCAAGCAAGTCCTAGATGACCCTCTAGTCAGTCCTCATAG
18536139 GCTCAAGC
1 GCTCAAGC
18536147 TAGCTTTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
41 3 0.07
42 37 0.86
43 3 0.07
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (42 bp):
GCTCAAGCAAGTCCTAGATGACCCTCTAGTCAGTCCTCATAG
Found at i:18536273 original size:25 final size:26
Alignment explanation
Indices: 18536240--18536328 Score: 126
Period size: 26 Copynumber: 3.4 Consensus size: 26
18536230 ACAAATTTTC
*
18536240 TCAAAAATTTACCATGGGTAAAATCT
1 TCAAAATTTTACCATGGGTAAAATCT
*
18536266 TCAAAATTTTACCATAGGTAAAATCT
1 TCAAAATTTTACCATGGGTAAAATCT
* *
18536292 TCAAAATTTTACTAAGGGTAAAAT-T
1 TCAAAATTTTACCATGGGTAAAATCT
18536317 GTCAAAATTTTA
1 -TCAAAATTTTA
18536329 TTAAGGGTGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 1 0.02
26 56 0.98
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACCATGGGTAAAATCT
Found at i:18536333 original size:26 final size:26
Alignment explanation
Indices: 18536240--18536341 Score: 118
Period size: 26 Copynumber: 3.9 Consensus size: 26
18536230 ACAAATTTTC
* * *
18536240 TCAAAAATTTACCATGGGTAAAATCT
1 TCAAAATTTTACTAAGGGTAAAATCT
*
18536266 TCAAAATTTTACCATA-GGTAAAATCT
1 TCAAAATTTTACTA-AGGGTAAAATCT
18536292 TCAAAATTTTACTAAGGGTAAAAT-T
1 TCAAAATTTTACTAAGGGTAAAATCT
* *
18536317 GTCAAAATTTTATTAAGGGTGAAAT
1 -TCAAAATTTTACTAAGGGTAAAAT
18536342 TTGGATGAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
25 2 0.03
26 66 0.97
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGTAAAATCT
Found at i:18548486 original size:24 final size:23
Alignment explanation
Indices: 18548459--18548508 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
18548449 AATTTTTTTC
18548459 AAAAAATATTTTTTATAAA-AATA
1 AAAAAATATTTTTT-TAAATAATA
*
18548482 AAAAAATATTTTTTTAAATAATT
1 AAAAAATATTTTTTTAAATAATA
18548505 AAAA
1 AAAA
18548509 TGTGCATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAAAATATTTTTTTAAATAATA
Found at i:18548603 original size:10 final size:10
Alignment explanation
Indices: 18548585--18548632 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
18548575 AAGGAACTTC
18548585 AAAATTTATA
1 AAAATTTATA
* *
18548595 AAAAGTTATT
1 AAAATTTATA
*
18548605 AAAATTTTTAA
1 AAAATTTAT-A
*
18548616 AAAATATATA
1 AAAATTTATA
18548626 AAAATTT
1 AAAATTT
18548633 CAAATGTGTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
10 22 0.76
11 7 0.24
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (10 bp):
AAAATTTATA
Found at i:18548610 original size:20 final size:21
Alignment explanation
Indices: 18548585--18548632 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
18548575 AAGGAACTTC
* *
18548585 AAAATTTATAAAAAGT-TATT
1 AAAATTTATAAAAAATATATA
*
18548605 AAAATTTTTAAAAAATATATA
1 AAAATTTATAAAAAATATATA
18548626 AAAATTT
1 AAAATTT
18548633 CAAATGTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AAAATTTATAAAAAATATATA
Found at i:18549053 original size:15 final size:15
Alignment explanation
Indices: 18549033--18549065 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
18549023 AAAAATATGA
18549033 AATTTATAATTAGTT
1 AATTTATAATTAGTT
18549048 AATTTATAATTAGTT
1 AATTTATAATTAGTT
18549063 AAT
1 AAT
18549066 ACTGATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
AATTTATAATTAGTT
Found at i:18564006 original size:17 final size:17
Alignment explanation
Indices: 18563984--18564019 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
18563974 TCCTTTTTAT
* *
18563984 CTTCTCTCTCTACTTCC
1 CTTCTCTATCTACATCC
18564001 CTTCTCTATCTACATCC
1 CTTCTCTATCTACATCC
18564018 CT
1 CT
18564020 AGTAATGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.44, G:0.00, T:0.44
Consensus pattern (17 bp):
CTTCTCTATCTACATCC
Found at i:18568657 original size:21 final size:20
Alignment explanation
Indices: 18568628--18568671 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
18568618 TTCAGACTAA
18568628 TAAAAATTTAAAAATAATATT
1 TAAAAATTTAAAAATAA-ATT
* * *
18568649 TAAATATTTTAGAATAAATT
1 TAAAAATTTAAAAATAAATT
18568669 TAA
1 TAA
18568672 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TAAAAATTTAAAAATAAATT
Found at i:18569409 original size:34 final size:34
Alignment explanation
Indices: 18569366--18569444 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
18569356 TGTTCGATCA
18569366 AATCGAGTTGAATCAAGTGAAAATTTTTTGAGTT
1 AATCGAGTTGAATCAAGTGAAAATTTTTTGAGTT
18569400 AATCGAGTTGAATCAAGTGAAAATTTTTTGAGTT
1 AATCGAGTTGAATCAAGTGAAAATTTTTTGAGTT
*
18569434 AATCAAGTTGA
1 AATCGAGTTGA
18569445 CGAGTCTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (34 bp):
AATCGAGTTGAATCAAGTGAAAATTTTTTGAGTT
Found at i:18569755 original size:21 final size:20
Alignment explanation
Indices: 18569704--18569757 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
18569694 ATTATTATTC
18569704 TAGAATTTTTTT-TATTTTT
1 TAGAATTTTTTTATATTTTT
* *
18569723 TA-ACTTTCTTTATATATTTT
1 TAGAATTTTTTTATAT-TTTT
18569743 TAGAATTTTTTTATA
1 TAGAATTTTTTTATA
18569758 AAATATAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.25
19 5 0.18
20 6 0.21
21 10 0.36
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.67
Consensus pattern (20 bp):
TAGAATTTTTTTATATTTTT
Found at i:18575134 original size:3 final size:3
Alignment explanation
Indices: 18575126--18575160 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
18575116 ATTGAGGAGT
18575126 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
18575161 TAAGAAGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:18575862 original size:11 final size:11
Alignment explanation
Indices: 18575846--18575878 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
18575836 GAAATGCATG
18575846 GAAATGAAGAA
1 GAAATGAAGAA
18575857 GAAATGAAGAA
1 GAAATGAAGAA
18575868 GAAATGAAGAA
1 GAAATGAAGAA
18575879 ATTCTTGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
GAAATGAAGAA
Found at i:18581921 original size:42 final size:42
Alignment explanation
Indices: 18581844--18581972 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
18581834 CCTGAAGGCT
** * * *
18581844 AAATAGAAGCTCATGAGAGCTAAACGGAAATCCATAAGGGTTG
1 AAAT-GAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTA
* ** * *
18581887 AACTGAAGCTCGTAAGAGTTGAACGAAAACCCATAAGGGTTA
1 AAATGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTA
18581929 AAATGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTA
1 AAATGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTA
18581971 AA
1 AA
18581973 CAAAAAATTA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 70 0.96
43 3 0.04
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (42 bp):
AAATGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTA
Found at i:18588049 original size:83 final size:81
Alignment explanation
Indices: 18587940--18588200 Score: 292
Period size: 84 Copynumber: 3.1 Consensus size: 81
18587930 TTACAAGATT
*
18587940 TTATTTAATTCAATTCAAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGCAGGA
1 TTATTTAATTCAAGTCAAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGC-GGA
18588005 ATAAATTCTGAAACAGAA
65 ATAAATTCTGAAACA-AA
* * *** * * * *
18588023 TTATTTGATT-ACGTCTTTGTTTGGAAACAAAACAACATCAAATAAAATCTTGTTAAACGGCGGG
1 TTATTTAATTCAAGTC-AAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGC-GG
* *
18588087 AATAAATCCCGAAACAAA
64 AATAAATTCTGAAACAAA
* *
18588105 TTTTATTTAATTCAATTCAAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAAATGGCGA
1 --TTATTTAATTCAAGTCAAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGCG-
18588170 GAATAAA-TCTCGAAACAAA
63 GAATAAATTCT-GAAACAAA
18588189 TTTTATTTAATT
1 --TTATTTAATT
18588201 TAATTTCTCG
Statistics
Matches: 146, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
82 5 0.03
83 65 0.45
84 73 0.50
85 3 0.02
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (81 bp):
TTATTTAATTCAAGTCAAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGCGGAA
TAAATTCTGAAACAAA
Found at i:18588163 original size:84 final size:85
Alignment explanation
Indices: 18587932--18588369 Score: 359
Period size: 87 Copynumber: 5.2 Consensus size: 85
18587922 TTGGGTTGTT
*
18587932 ACAAGATTTTATTTAATTCAATTC-AAATTAGGAAACAAAATAAAATCAAATAAAATCTTGTTAA
1 ACAA-ATTTTATTTAATTCAATTCTAAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAA
* * * *
18587996 ATGGCAGGAATAAATTCTGAA
65 ACGGCGGGAATAAATCCCGAA
* ** *** * * * *
18588017 ACAGAA--TTATTTGATT-ACGTCTTTGTTTGGAAACAAAACAACATCAAATAAAATCTTGTTAA
1 ACA-AATTTTATTTAATTCAATTCTAAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAA
18588079 ACGGCGGGAATAAATCCCGAA
65 ACGGCGGGAATAAATCCCGAA
18588100 ACAAATTTTATTTAATTCAATTC-AAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAAA
1 ACAAATTTTATTTAATTCAATTCTAAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAAA
* * *
18588164 TGGCGAGAATAAATCTCGAA
66 CGGCGGGAATAAATCCCGAA
* *** * * * * *
18588184 ACAAATTTTATTTAATTTAATTTCTCGTTTGTGGCAACAAAATCAAATCAAATAAATTTTTATTA
1 ACAAATTTTATTTAATTCAA-TTCTAAATT-AGGAAACAAAATAAAATCAAATAAAATCTTATTA
** *
18588249 AACGTTGGGAATAAATCCCAAA
64 AACGGCGGGAATAAATCCCGAA
* * * ** * * ** **
18588271 ATAGATTTTATTTAATTTAATTTCTCATTTTTGGCAACAAAATTAAAATGTAAT-AAATC-CGTT
1 ACAAATTTTATTTAATTCAA-TTCT-AAATTAGGAAACAAAA-TAAAATCAAATAAAATCTTATT
* * *
18588334 GAACGGCGGGAATGAATCTCGAA
63 AAACGGCGGGAATAAATCCCGAA
*
18588357 ACATATTTTATTT
1 ACAAATTTTATTT
18588370 TACTCGTTTT
Statistics
Matches: 283, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
82 5 0.02
83 63 0.22
84 79 0.28
85 10 0.04
86 33 0.12
87 82 0.29
88 11 0.04
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (85 bp):
ACAAATTTTATTTAATTCAATTCTAAATTAGGAAACAAAATAAAATCAAATAAAATCTTATTAAA
CGGCGGGAATAAATCCCGAA
Found at i:18588410 original size:76 final size:78
Alignment explanation
Indices: 18588325--18588613 Score: 273
Period size: 76 Copynumber: 3.6 Consensus size: 78
18588315 AAAATGTAAT
* *
18588325 AAATCCGTTGAACGGCGGGAATGAATCTCGAAACATATTTTATTTTACTCGTTTTTGGAAAT-AA
1 AAAT-CGTTGAACGGCGGGAATCAATC-CGAAACAGATTTTATTTTACTCGTTTTTGGAAATAAA
*
18588389 A-AAAA-TTGGAATA
64 ACAAAATTTAGAATA
* *
18588402 AAATCGTTGAACAGCGGGAATCAATCCTGAAACGGATTTTATTTTACTCGTTTTTGGAAATAAAA
1 AAATCGTTGAACGGCGGGAATCAATCC-GAAACAGATTTTATTTTACTCGTTTTTGGAAATAAAA
18588467 CAAAATTTAGAATA
65 CAAAATTTAGAATA
* * * *
18588481 AAATCGTTAAACGTCGGGAATCAATCCCGAAATAGATTTTA-TTTAC-CTTTAATTTCCCGTTTT
1 AAATCGTTGAACGGCGGGAATCAAT-CCGAAACAGATTTTATTTTACTCGTT--TTT---G----
*
18588544 GAAATAAAATCAAAATAATAGAATA
56 GAAATAAAA-CAAAAT-TTAGAATA
* * *
18588569 AAATTCGTTGTACGGCGAGAATAAATCCTGAAACAGATTTTATTT
1 AAA-TCGTTGAACGGCGGGAATCAATCC-GAAACAGATTTTATTT
18588614 ACTTTTAATT
Statistics
Matches: 175, Mismatches: 18, Indels: 25
0.80 0.08 0.11
Matches are distributed among these distances:
75 1 0.01
76 51 0.29
77 10 0.06
78 9 0.05
79 43 0.25
80 2 0.01
82 1 0.01
86 9 0.05
87 6 0.03
88 12 0.07
89 29 0.17
90 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.33
Consensus pattern (78 bp):
AAATCGTTGAACGGCGGGAATCAATCCGAAACAGATTTTATTTTACTCGTTTTTGGAAATAAAAC
AAAATTTAGAATA
Found at i:18588566 original size:88 final size:88
Alignment explanation
Indices: 18588453--18588624 Score: 231
Period size: 89 Copynumber: 2.0 Consensus size: 88
18588443 TTTTACTCGT
* * * * *
18588453 TTTTGGAAATAAAACAAAATTTAGAATAAAA-TCGTTAAACGTCGGGAATCAATCCCGAAATAGA
1 TTTTGGAAATAAAACAAAATATAGAATAAAATTCGTTAAACGGCGAGAATAAATCCCGAAACAGA
18588517 TTTTATTTACCTTTAATTTCCCG
66 TTTTATTTACCTTTAATTTCCCG
** *
18588540 TTTT-GAAATAAAATCAAAATAATAGAATAAAATTCGTTGTACGGCGAGAATAAATCCTGAAACA
1 TTTTGGAAATAAAA-CAAAAT-ATAGAATAAAATTCGTTAAACGGCGAGAATAAATCCCGAAACA
*
18588604 GATTTTATTTACTTTTAATTT
64 GATTTTATTTACCTTTAATTT
18588625 TGGAAAAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
86 9 0.12
87 10 0.14
88 10 0.14
89 44 0.60
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (88 bp):
TTTTGGAAATAAAACAAAATATAGAATAAAATTCGTTAAACGGCGAGAATAAATCCCGAAACAGA
TTTTATTTACCTTTAATTTCCCG
Found at i:18594666 original size:19 final size:19
Alignment explanation
Indices: 18594642--18594678 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18594632 TTTTAATTTC
*
18594642 AAAATAAAATAAAGATAAT
1 AAAATAAAATAAAAATAAT
*
18594661 AAAATAAGATAAAAATAA
1 AAAATAAAATAAAAATAA
18594679 AATACAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAAAATAAT
Found at i:18600297 original size:35 final size:35
Alignment explanation
Indices: 18600258--18600326 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
18600248 ACTTGCCTCT
18600258 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
*
18600293 TCCCACTCTCCCATGCTTTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
18600327 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.51, G:0.10, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:18600738 original size:8 final size:8
Alignment explanation
Indices: 18600702--18600750 Score: 53
Period size: 9 Copynumber: 5.8 Consensus size: 8
18600692 TAATATATAT
18600702 AAAAAATA
1 AAAAAATA
18600710 CAAAAAAGTA
1 -AAAAAA-TA
* *
18600720 TAAACATA
1 AAAAAATA
18600728 AAAAAATAA
1 AAAAAAT-A
18600737 AAAAAATA
1 AAAAAATA
18600745 AAAAAA
1 AAAAAA
18600751 AATTTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 14 0.41
9 18 0.53
10 2 0.06
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:18600858 original size:11 final size:11
Alignment explanation
Indices: 18600844--18600877 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
18600834 CCCTTCCCCT
18600844 TCCCTTCTCTC
1 TCCCTTCTCTC
18600855 TCCCTTCTCTC
1 TCCCTTCTCTC
18600866 TTCCC-TCTCTC
1 -TCCCTTCTCTC
18600877 T
1 T
18600878 TCTTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 17 0.77
12 4 0.18
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:18600860 original size:22 final size:22
Alignment explanation
Indices: 18600834--18600877 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18600824 GGCCGGATTC
18600834 CCCTTC-CCCTTCCCTTCTCTCT
1 CCCTTCTCCCTTCCC-TCTCTCT
*
18600856 CCCTTCTCTCTTCCCTCTCTCT
1 CCCTTCTCCCTTCCCTCTCTCT
18600878 TCTTTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (22 bp):
CCCTTCTCCCTTCCCTCTCTCT
Found at i:18600878 original size:11 final size:11
Alignment explanation
Indices: 18600842--18600879 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
18600832 TCCCCTTCCC
18600842 CTTCCCT-TCT
1 CTTCCCTCTCT
18600852 CTCTCCCTTCTCT
1 CT-TCCC-TCTCT
18600865 CTTCCCTCTCT
1 CTTCCCTCTCT
18600876 CTTC
1 CTTC
18600880 TTTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 5 0.20
13 5 0.20
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
CTTCCCTCTCT
Found at i:18601364 original size:3 final size:3
Alignment explanation
Indices: 18601356--18601380 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
18601346 TGTATTTCAA
18601356 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
18601381 GTACATTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:18605606 original size:39 final size:39
Alignment explanation
Indices: 18605538--18605620 Score: 112
Period size: 39 Copynumber: 2.1 Consensus size: 39
18605528 ATAAATAAGC
* *
18605538 ATTTTAGTTAGTAGAATTCAATAATGATTAATTTTTACG
1 ATTTTAGTTAGTAGAATTCAATAACGATTAACTTTTACG
** * *
18605577 ATTTTAGTTAGTAGAATTTGATAGCGATTAACTTTTATG
1 ATTTTAGTTAGTAGAATTCAATAACGATTAACTTTTACG
18605616 ATTTT
1 ATTTT
18605621 TACGATTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (39 bp):
ATTTTAGTTAGTAGAATTCAATAACGATTAACTTTTACG
Found at i:18610494 original size:814 final size:817
Alignment explanation
Indices: 18608895--18610761 Score: 2774
Period size: 814 Copynumber: 2.3 Consensus size: 817
18608885 TTATATTTAA
18608895 ATTATACATACTGCATAAAATTGAAATAATTTTATAAATTCATATTAATGTATCAATTTAAAATA
1 ATTATACATACTGCATAAAATTGAAATAATTTTATAAATTCATATTAATGTATCAATTTAAAATA
*
18608960 ATGTCATAACAATTATCAAAATAAAAAAATCTACTAAAAAGCATTAAACTTATAAATAAAGACAA
66 ATGTCATAACAATTATCAAAAT-AAAAAATCTACTAAAAATCATTAAACTTATAAATAAAGACAA
* * **
18609025 ATAAAATAAATTAAAAAATTAGCGGCGCTTATACAGAAAACGCCGCTATAGAACAATATTTGTGG
130 ATAAAATAAATTGAAAAATTAGCGGCGCTTATACAGAAAACGCCGCTATAGAACAAGATTTGTAC
** ** ** ** *
18609090 CGTTTATTGCAAAAACGCCGCAAAATGTGTAATCGAAAGGACTTCGTTTTTATACTGTTTATTGG
195 CG--TATAACAAAAACGCCGCAAAATGTGTAATCGAAAGGACGGCGTTTTTATA-TGTAAAACGC
* ** * ** * * ** * * *
18609155 TATTACCGGCGTTTTTTGTAAAAATGCCGCAAATGAAAGTTATGTATTTTAGGGTTTTGGGATTA
257 CACAAACGAAGTTGTGTCAAAAAACGCCGCAAATGAAAGTTATGTATTTTAGGGTATTGGAATTA
18609220 ATATTTAAGTTTTGTTGTATACGGTTTGGGGTTTTAGGGTTCAATACATAATGTTTATTAATTTA
322 ATATTTAAGTTTTGTTGTATACGGTTTGGGGTTTTAGGGTTCAATACATAATGTTTATTAATTTA
*
18609285 GGATTACAATTTTATGTTTAGGGTTTTGGGTTTAGGTTTACGGCTTGAGGAATGGGGTTTAGGGT
387 GGATTACAATTTTATGTTTAGGGTTTTGGGTTTAGGTTTACGGCTTGAGGAATGGGGTTTAGGAT
*
18609350 TTGAGTTTACATGTTAGTTTTAATGCGAGGTTTACGGCTTATAAGATATATTAATGATCAAATTT
452 TTGAGTTTACATGTTAGTTTTAATGCGAGGTTTACGGCTTATAAGA-ATAGTAATGATCAAATTT
* * *
18609415 ATTGTTTTACGGCTTGATGTTTATGGTTTATGGTTTACCCTTATTGATTTGAATGTTACAATGCT
516 ACTGTTTTACGGCTTAATGTTTATGGTTTATGGTTCACCCTTATTGATTTGAATGTTACAATGCT
* * *
18609480 TGGGTTTTGTGTTCGGATTTGCATGAAGAATATGAGTTAGCTAGGGTTTAGCTTTTAATTTTAAT
581 TGGGTTTTGCGTTCGGATTTGCATGAAGAATACGAGTTAGCTAGGGTTTAGCCTTTAATTTTAAT
18609545 GTTTACGGGTTATAGGGATTAATAGCTTCGGGTTTTAGGGTACAAAAGCAAAAAAAAAATTAAAA
646 GTTTACGGGTTATAGGGATTAATAGCTTCGGGTTTTAGGGTACAAAAGCAAAAAAAAAATTAAAA
*
18609610 TTCTTTCTGCTTTTTACTTCTTATTATGTCACTAGTATATAGGATTATAAGAGACAGGGTTATAT
711 TTCTTTCTACTTTTTACTTCTTATTATGTCACTAGTATATAGGATTATAAGAGACAGGGTTATAT
18609675 AT-ATAATATGCCACGATATATATCTATGCATATATGTTATAT
776 ATAAT-ATATGCCACGATATATATCTATGCATATATGTTATAT
* *
18609717 ATTATACATATTGCATAAAATTGAAATAATGTTATAAATTCATATTAATGTATCAATTTAAAATA
1 ATTATACATACTGCATAAAATTGAAATAATTTTATAAATTCATATTAATGTATCAATTTAAAATA
*
18609782 ATGTCATAACAATTATCAAAATAAAAAATCTACTAAAAATCATTAGACTTATAAATAAAGACAAA
66 ATGTCATAACAATTATCAAAATAAAAAATCTACTAAAAATCATTAAACTTATAAATAAAGACAAA
** *
18609847 TAAAATAAATTGAAAAATTAGCGGCATTTATACAGAAAACGCCGTTATAGAACAAGATTTGTAAC
131 TAAAATAAATTGAAAAATTAGCGGCGCTTATACAGAAAACGCCGCTATAGAACAAGATTTGT-AC
* *** **** * * * * * *
18609912 CG-A-AACGACTTCGTTTTTATACTGTTTATTGGTATTA-G-CGGCG-TTTT-T-TGTAAAAACG
195 CGTATAACAAAAACG-CCGCAAAATGTGTAATCG-A-AAGGACGGCGTTTTTATATGT-AAAACG
*
18609970 CCACAAATGAAAGTTGTGTCAAAAAACGCCGCAAATGAAAGTTATGTATTTTAGGGTATTGGAAT
256 CCACAAACG-AAGTTGTGTCAAAAAACGCCGCAAATGAAAGTTATGTATTTTAGGGTATTGGAAT
* *
18610035 TAATATTTAAGTTTTGTTGTATGCGGTTTGGGGTTTTAGGGTTCGATACATAATGTTTATTAATT
320 TAATATTTAAGTTTTGTTGTATACGGTTTGGGGTTTTAGGGTTCAATACATAATGTTTATTAATT
* *
18610100 TAGGATTATAATTTTATGTTTAGGGTTTTGGGTTTAGGTTTACGGTTTGAGGAATGGGGTTTAGG
385 TAGGATTACAATTTTATGTTTAGGGTTTTGGGTTTAGGTTTACGGCTTGAGGAATGGGGTTTAGG
18610165 ATTTGAGTTTACATGTTAGTTTTAATGCGAGGTTTACGGCTTATAAG-AT-GTAATGATCAAATT
450 ATTTGAGTTTACATGTTAGTTTTAATGCGAGGTTTACGGCTTATAAGAATAGTAATGATCAAATT
18610228 TACTGTTTTACGGCTTAATGTTTATGGTTTATGGTTCACCCTTATTGATTTGAATGTTACAATGC
515 TACTGTTTTACGGCTTAATGTTTATGGTTTATGGTTCACCCTTATTGATTTGAATGTTACAATGC
*
18610293 TTGGTTTTTGCGTTCGGATTTGCATGAAGAATACGAGTTAGCTAGGGTTTAGCCTTTAATTTTAA
580 TTGGGTTTTGCGTTCGGATTTGCATGAAGAATACGAGTTAGCTAGGGTTTAGCCTTTAATTTTAA
18610358 TGTTTACGGGTTATAGGGATTAATAGCTTCGGGTTTTAGGGTACAAAAGCAAAAAAAAAATTAAA
645 TGTTTACGGGTTATAGGGATTAATAGCTTCGGGTTTTAGGGTACAAAAGCAAAAAAAAAATTAAA
* *
18610423 ATTCTTTCTACTTTTTACTTCTTATTATTTCACTAGTATATATATAGGATTATAAGTGACAGGG-
710 ATTCTTTCTACTTTTTACTTCTTATTATGTCACTAG----TATATAGGATTATAAGAGACAGGGT
*
18610487 T-TATATAATATATGTCACGATATATATCTATGCATATATGTTATAT
771 TATATATAATATATGCCACGATATATATCTATGCATATATGTTATAT
* **
18610533 ATTATATATACTGCATAAAATTGAAATAATTTTATAAAAGCATATTAATGTATCAATTTAAAATA
1 ATTATACATACTGCATAAAATTGAAATAATTTTATAAATTCATATTAATGTATCAATTTAAAATA
* *
18610598 ATATCATAACAATTATC--AA-AAAAAATCTATTAAAAATCATTAAACTTATAAATAAAGACAAA
66 ATGTCATAACAATTATCAAAATAAAAAATCTACTAAAAATCATTAAACTTATAAATAAAGACAAA
* **
18610660 TAAAATAAATTGAAAAATTAGCGGCGCTTATACAGAAAACGCCACTATAGAACAAGATTTGTGGC
131 TAAAATAAATTGAAAAATTAGCGGCGCTTATACAGAAAACGCCGCTATAGAACAAGATTTGTACC
** * *
18610725 GTTTATTGCAAAAACGCCGCAAAACGTGTAACCGAAA
196 G--TATAACAAAAACGCCGCAAAATGTGTAATCGAAA
18610762 CGACTTCGTT
Statistics
Matches: 933, Mismatches: 97, Indels: 39
0.87 0.09 0.04
Matches are distributed among these distances:
812 2 0.00
813 100 0.11
814 238 0.26
815 13 0.01
816 126 0.14
817 222 0.24
818 31 0.03
819 13 0.01
820 2 0.00
821 99 0.11
822 87 0.09
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.37
Consensus pattern (817 bp):
ATTATACATACTGCATAAAATTGAAATAATTTTATAAATTCATATTAATGTATCAATTTAAAATA
ATGTCATAACAATTATCAAAATAAAAAATCTACTAAAAATCATTAAACTTATAAATAAAGACAAA
TAAAATAAATTGAAAAATTAGCGGCGCTTATACAGAAAACGCCGCTATAGAACAAGATTTGTACC
GTATAACAAAAACGCCGCAAAATGTGTAATCGAAAGGACGGCGTTTTTATATGTAAAACGCCACA
AACGAAGTTGTGTCAAAAAACGCCGCAAATGAAAGTTATGTATTTTAGGGTATTGGAATTAATAT
TTAAGTTTTGTTGTATACGGTTTGGGGTTTTAGGGTTCAATACATAATGTTTATTAATTTAGGAT
TACAATTTTATGTTTAGGGTTTTGGGTTTAGGTTTACGGCTTGAGGAATGGGGTTTAGGATTTGA
GTTTACATGTTAGTTTTAATGCGAGGTTTACGGCTTATAAGAATAGTAATGATCAAATTTACTGT
TTTACGGCTTAATGTTTATGGTTTATGGTTCACCCTTATTGATTTGAATGTTACAATGCTTGGGT
TTTGCGTTCGGATTTGCATGAAGAATACGAGTTAGCTAGGGTTTAGCCTTTAATTTTAATGTTTA
CGGGTTATAGGGATTAATAGCTTCGGGTTTTAGGGTACAAAAGCAAAAAAAAAATTAAAATTCTT
TCTACTTTTTACTTCTTATTATGTCACTAGTATATAGGATTATAAGAGACAGGGTTATATATAAT
ATATGCCACGATATATATCTATGCATATATGTTATAT
Found at i:18618453 original size:21 final size:21
Alignment explanation
Indices: 18618423--18618462 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18618413 AGTAGATGCG
18618423 GCAGCAAGAGAAGCAGAGGCA
1 GCAGCAAGAGAAGCAGAGGCA
* *
18618444 GCAGCGAGAGAAGCTGAGG
1 GCAGCAAGAGAAGCAGAGG
18618463 TTCAACAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.42, T:0.03
Consensus pattern (21 bp):
GCAGCAAGAGAAGCAGAGGCA
Found at i:18618466 original size:87 final size:86
Alignment explanation
Indices: 18618346--18618543 Score: 229
Period size: 87 Copynumber: 2.3 Consensus size: 86
18618336 ACACAACTTA
* * *
18618346 AAGCGGAGGCAACATCGAGAGAAGCTGAAGTTCAA-AAAAGATATGAAGAACTCCAACTA-CAAC
1 AAGCAGAGGC-ACAGCGAGAGAAGCTGAAGTTCAACAAAAG-TATGAACAACTCCAAC-AGCAAC
*
18618409 TTAAAGTAGATGCGGCAGCAAGAG
63 TTAAAGCAGATGCGGCAGCAAGAG
* * * **
18618433 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAACAACTCTAGCAGCAGTTT
1 AAGCAGAGGCA-CAGCGAGAGAAGCTGAAGTTCAACAAAAGTATGAACAACTCCAACAGCAACTT
*
18618498 AAAGCAGATGCGGCAGCGAGAG
65 AAAGCAGATGCGGCAGCAAGAG
* *
18618520 AAGCAAAGGCTACAGCGAGGGAAG
1 AAGCAGAGGC-ACAGCGAGAGAAG
18618544 TAGAGGCTAC
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
86 2 0.02
87 87 0.92
88 6 0.06
ACGTcount: A:0.41, C:0.18, G:0.29, T:0.12
Consensus pattern (86 bp):
AAGCAGAGGCACAGCGAGAGAAGCTGAAGTTCAACAAAAGTATGAACAACTCCAACAGCAACTTA
AAGCAGATGCGGCAGCAAGAG
Found at i:18618535 original size:21 final size:21
Alignment explanation
Indices: 18618511--18618566 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
18618501 GCAGATGCGG
*
18618511 CAGCGAGAGAAGCAAAGGCTA
1 CAGCGAGGGAAGCAAAGGCTA
* *
18618532 CAGCGAGGGAAGTAGAGGCTA
1 CAGCGAGGGAAGCAAAGGCTA
*
18618553 CAACGAGGGAAGCA
1 CAGCGAGGGAAGCA
18618567 GAACAGCTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.39, C:0.18, G:0.38, T:0.05
Consensus pattern (21 bp):
CAGCGAGGGAAGCAAAGGCTA
Found at i:18618943 original size:43 final size:43
Alignment explanation
Indices: 18618882--18619261 Score: 478
Period size: 43 Copynumber: 8.8 Consensus size: 43
18618872 GTTTTTCTAA
* ** * *
18618882 AAGCGCCGCTAAAAACCATGAACTATAGCGGTGTTTGTTGGTT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
18618925 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTATGG-T
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGT-TGGAT
* * *
18618968 AAGCGCCGCTAAAGACCAAGATCTATAGCGGCGTTT-TATGGGT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGT-TGGAT
* * * ** *
18619011 AAGCACCGCTAAAGGCCATGGGCTATAGTAGCGTTTGATGGAT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
* * *
18619054 AAGCGCCGCTAAAGACCATGGTTTATAGCGGCGTTTGATGGAA
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
*
18619097 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGATGGAT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
*
18619140 AAGGGCCGCTAAAGACCATGGTCTATAGCGGCGTTT-TATGGAT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGT-TGGAT
* * *
18619183 AAGCGCCGCTAAAGACCATGGTCTATAGTGGCATTTGATGGAT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
* * * *
18619226 AAACGCCGCAAAAGACCCTGGTCTATAGCGACGTTT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTT
18619262 ATTATAAAAA
Statistics
Matches: 296, Mismatches: 36, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
42 5 0.02
43 288 0.97
44 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (43 bp):
AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGAT
Found at i:18619589 original size:25 final size:26
Alignment explanation
Indices: 18619549--18619597 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
18619539 GTAAAATTAT
18619549 AATAAAATTTTGAT-AAAATAATAAG
1 AATAAAATTTTGATAAAAATAATAAG
18619574 AATAAAATTATT-ATAAAAATAATA
1 AATAAAATT-TTGATAAAAATAATA
18619598 TTTCAGTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (26 bp):
AATAAAATTTTGATAAAAATAATAAG
Found at i:18619817 original size:16 final size:17
Alignment explanation
Indices: 18619774--18619829 Score: 69
Period size: 16 Copynumber: 3.2 Consensus size: 17
18619764 TCATTAAAAT
*
18619774 AAATTAAATAAATTATTAAA
1 AAATTAAA-AAA-TATT-TA
18619794 AAATTAAAAAATATTTA
1 AAATTAAAAAATATTTA
18619811 AAA-TAAAAAATATTTA
1 AAATTAAAAAATATTTA
18619827 AAA
1 AAA
18619830 AATAAAGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
16 16 0.46
17 4 0.11
18 4 0.11
19 3 0.09
20 8 0.23
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATTAAAAAATATTTA
Found at i:18620530 original size:21 final size:22
Alignment explanation
Indices: 18620485--18620534 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
18620475 GATATTATTA
18620485 TTTTT-ATAAAAATTTTATAAC
1 TTTTTAATAAAAATTTTATAAC
* *
18620506 TTTTTAATAAAATTTTTAT-AG
1 TTTTTAATAAAAATTTTATAAC
18620527 TTTTTAAT
1 TTTTTAAT
18620535 TAATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTAATAAAAATTTTATAAC
Found at i:18620716 original size:52 final size:52
Alignment explanation
Indices: 18620652--18620757 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
18620642 GTAAATATTT
18620652 TCAATAAAGAACCTAAATGCTATCAAAAGCATAGGCAGTTTTATACCTTTCA
1 TCAATAAAGAACCTAAATGCTATCAAAAGCATAGGCAGTTTTATACCTTTCA
*
18620704 TCAATAAAGAACCTAAATGCTATCTAAAGCATAGGCAGTTTTATACCTTTCA
1 TCAATAAAGAACCTAAATGCTATCAAAAGCATAGGCAGTTTTATACCTTTCA
18620756 TC
1 TC
18620758 CGAAGTCCCT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (52 bp):
TCAATAAAGAACCTAAATGCTATCAAAAGCATAGGCAGTTTTATACCTTTCA
Found at i:18622317 original size:125 final size:125
Alignment explanation
Indices: 18622095--18622351 Score: 356
Period size: 125 Copynumber: 2.1 Consensus size: 125
18622085 AAATAGTGGG
** * * * *
18622095 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTAGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTCTGAAATAGCGCCCTCGTAGACGCGATT
18622160 TCGCTACAGTGGTCATGTAAGAAATAA-ATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGGTCATGTAAGAAATAATATTTTTTTTGACG-TTTCTGAGCAAATAGTATA
* * * *
18622220 AAATCGCTGATACTAGGATGCTATATGAGAAGAAATTCTGAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTCTGAAATAGCGCCCTCGTAGACGCGATT
* * * *
18622285 TCGCTACAGTTGGTCATGTAGGAAAT-ATTTTTTTTTTGACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAG-TGGTCATGTAAGAAATAATATTTTTTTTGACGTTTCTGAGCAAATAGTATA
18622345 AAATCGC
1 AAATCGC
18622352 ACCCTCGTGG
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
125 89 0.77
126 27 0.23
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (125 bp):
AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTCTGAAATAGCGCCCTCGTAGACGCGATT
TCGCTACAGTGGTCATGTAAGAAATAATATTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:18624416 original size:23 final size:23
Alignment explanation
Indices: 18624386--18624617 Score: 254
Period size: 23 Copynumber: 9.6 Consensus size: 23
18624376 CGTTGCTTCG
18624386 ATTAGGTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTTTAATTAA
*
18624409 ATTAGGTTAAGGTTTTTAATT-A
1 ATTAGGTTAGGGTTTTTAATTAA
*
18624431 AGTAGGGTTAGGGTTTTTAATTAA
1 ATTA-GGTTAGGGTTTTTAATTAA
* *
18624455 GTTATGTTAGGGTTTTTAATTTAATTA
1 ATTAGGTTAGGGTTTTTAA-TT-A--A
18624482 AGTTAGGTTA-GGTTTTATAATTAA
1 A-TTAGGTTAGGGTTTT-TAATTAA
* *
18624506 GTTATGTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTTTAATTAA
18624529 ATTAGGTTAGGGTTTTTAATTAAA
1 ATTAGGTTAGGGTTTTTAATT-AA
18624553 TTAGGTTAGGGTTAGGGTTTTTAATT-A
1 --A--TTA-GGTTAGGGTTTTTAATTAA
*
18624580 AGTAGGGTTAGGGTTTTTAATTAA
1 ATTA-GGTTAGGGTTTTTAATTAA
18624604 ATTAGGTTAGGGTT
1 ATTAGGTTAGGGTT
18624618 AGGGTTTTTA
Statistics
Matches: 179, Mismatches: 14, Indels: 32
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.02
23 113 0.63
24 18 0.10
25 2 0.01
26 2 0.01
27 10 0.06
28 13 0.07
29 17 0.09
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.47
Consensus pattern (23 bp):
ATTAGGTTAGGGTTTTTAATTAA
Found at i:18626789 original size:14 final size:15
Alignment explanation
Indices: 18626772--18626805 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
18626762 AATAAATATC
18626772 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
18626786 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
18626801 TAAAA
1 TAAAA
18626806 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:18627029 original size:22 final size:22
Alignment explanation
Indices: 18626999--18627040 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18626989 ATTTGGAGAT
*
18626999 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
18627021 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
18627041 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:18627048 original size:30 final size:30
Alignment explanation
Indices: 18627012--18627070 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
18627002 TTGAAGGAAA
* * *
18627012 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTAGAAGGAAATTGAGAGT
18627042 TTGAGAGAATTTTAGAAGGAAATTGAGAG
1 TTGAGAGAATTTTAGAAGGAAATTGAGAG
18627071 AAATTTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.34, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTAGAAGGAAATTGAGAGT
Found at i:18627061 original size:52 final size:51
Alignment explanation
Indices: 18626990--18627092 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 51
18626980 TTAATATGGA
* * *
18626990 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTAGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
18627041 TTTGAGAGAATTTTAGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTAGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
18627093 AATTTTTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
51 4 0.09
52 33 0.72
53 9 0.20
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (51 bp):
TTTGGAGAATTTTAGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:18627070 original size:22 final size:22
Alignment explanation
Indices: 18627042--18627133 Score: 141
Period size: 22 Copynumber: 4.2 Consensus size: 22
18627032 ATTTGAGAGT
*
18627042 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
* *
18627064 TTGAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAGGAAA
18627086 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAATTTTTG-AAGGAAA
18627108 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
18627130 TTGA
1 TTGA
18627134 TATTGAATTT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
21 4 0.06
22 56 0.88
23 4 0.06
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.30
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:18635368 original size:6 final size:6
Alignment explanation
Indices: 18635357--18635384 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
18635347 TTATGCTGGA
18635357 AATGGC AATGGC AATGGC AATGGC AATG
1 AATGGC AATGGC AATGGC AATGGC AATG
18635385 ACAAGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (6 bp):
AATGGC
Found at i:18635396 original size:18 final size:18
Alignment explanation
Indices: 18635353--18635393 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18635343 CTAATTATGC
*
18635353 TGGAAATGGCAATGGCAA
1 TGGAAATGGCAATGACAA
*
18635371 TGGCAATGGCAATGACAA
1 TGGAAATGGCAATGACAA
18635389 -GGAAA
1 TGGAAA
18635394 ATGTTGCTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15
Consensus pattern (18 bp):
TGGAAATGGCAATGACAA
Found at i:18637325 original size:11 final size:11
Alignment explanation
Indices: 18637309--18637345 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
18637299 TTAATCAAAT
18637309 ATATATATTTA
1 ATATATATTTA
**
18637320 ATATATATAAA
1 ATATATATTTA
18637331 ATATATATTTA
1 ATATATATTTA
18637342 ATAT
1 ATAT
18637346 GGGCCAGGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATATATTTA
Found at i:18637332 original size:24 final size:23
Alignment explanation
Indices: 18637273--18637345 Score: 78
Period size: 22 Copynumber: 3.1 Consensus size: 23
18637263 TAGCCGAAAT
*
18637273 TATATATTAAATATATAT-TTTTA
1 TATATA-TAAATATATATATTTAA
* *
18637296 TTTTTAATCAAATATATATATTTAA
1 TATAT-AT-AAATATATATATTTAA
18637321 TATATATAAA-ATATATATTTAA
1 TATATATAAATATATATATTTAA
18637343 TAT
1 TAT
18637346 GGGCCAGGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
22 15 0.36
23 7 0.17
24 13 0.31
25 7 0.17
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (23 bp):
TATATATAAATATATATATTTAA
Found at i:18638791 original size:10 final size:10
Alignment explanation
Indices: 18638773--18638809 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
18638763 CTCCACCTTT
18638773 CCTAGCCGAG
1 CCTAGCCGAG
*
18638783 CCGAGCCGAG
1 CCTAGCCGAG
*
18638793 CCTAGCCTAG
1 CCTAGCCGAG
18638803 CCTAGCC
1 CCTAGCC
18638810 AGGCGTGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.19, C:0.43, G:0.27, T:0.11
Consensus pattern (10 bp):
CCTAGCCGAG
Found at i:18644984 original size:17 final size:18
Alignment explanation
Indices: 18644964--18645005 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
18644954 AAATAAACAA
18644964 TTAAAAAT-CATAAAATT
1 TTAAAAATACATAAAATT
*
18644981 TTAAAAATATATAAAATT
1 TTAAAAATACATAAAATT
18644999 TATAAAA
1 T-TAAAA
18645006 CTGGTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 9 0.41
19 5 0.23
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
TTAAAAATACATAAAATT
Found at i:18646719 original size:76 final size:76
Alignment explanation
Indices: 18646623--18646764 Score: 198
Period size: 76 Copynumber: 1.9 Consensus size: 76
18646613 TGCATGATTT
18646623 TTGAAATTAAAAAGCATTGATGTTGTGCAAATGTAAAGACCT-TTACCAAAATCTGCTCCTTCAG
1 TTGAAATTAAAAAGCATTGATGTTGTGCAAATGTAAA-ACCTCTT-CCAAAATCTGCTCCTTCAG
18646687 CTACCATAGCGTG
64 CTACCATAGCGTG
* * * * * *
18646700 TTGAAGTT-AAAAGCGTTGATGTTGTGCAGATGTAAAACCTCTTTCGAATTCTGCTCCTTCAGCT
1 TTGAAATTAAAAAGCATTGATGTTGTGCAAATGTAAAACCTCTTCCAAAATCTGCTCCTTCAGCT
18646764 A
66 A
18646765 TACAGGTTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
75 23 0.40
76 28 0.48
77 7 0.12
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (76 bp):
TTGAAATTAAAAAGCATTGATGTTGTGCAAATGTAAAACCTCTTCCAAAATCTGCTCCTTCAGCT
ACCATAGCGTG
Found at i:18660049 original size:24 final size:24
Alignment explanation
Indices: 18660022--18660074 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
18660012 TATTAATTGA
*
18660022 AGAAAGGATTAAATTGTAAAAGTG
1 AGAAAGGATTAAATTGCAAAAGTG
*
18660046 AGAAATGATTAAATTGCAAAAGTG
1 AGAAAGGATTAAATTGCAAAAGTG
18660070 AGAAA
1 AGAAA
18660075 AATTTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.23
Consensus pattern (24 bp):
AGAAAGGATTAAATTGCAAAAGTG
Found at i:18663065 original size:15 final size:16
Alignment explanation
Indices: 18663047--18663076 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18663037 TATTATTTCA
18663047 TTATT-TATTCTTTTT
1 TTATTCTATTCTTTTT
18663062 TTATTCTATTCTTTT
1 TTATTCTATTCTTTT
18663077 CATGTGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTCTATTCTTTTT
Found at i:18668428 original size:17 final size:18
Alignment explanation
Indices: 18668403--18668443 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
18668393 TTGTTTTCTT
*
18668403 TTTACTCTTTTA-GTTTC
1 TTTACTCTTTTATGTTTA
*
18668420 TTTATTCTTTTATGTTTA
1 TTTACTCTTTTATGTTTA
18668438 TTTACT
1 TTTACT
18668444 TTATTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTACTCTTTTATGTTTA
Found at i:18668445 original size:23 final size:23
Alignment explanation
Indices: 18668411--18668454 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
18668401 TTTTTACTCT
*
18668411 TTTAGTTTCTTTATTCTTTTATG
1 TTTAGTTTCTTTATTATTTTATG
18668434 TTTA-TTTACTTTATTATTTTA
1 TTTAGTTT-CTTTATTATTTTA
18668455 ATGATAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.70
Consensus pattern (23 bp):
TTTAGTTTCTTTATTATTTTATG
Found at i:18675089 original size:20 final size:22
Alignment explanation
Indices: 18675059--18675099 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
18675049 AATAATTCAA
18675059 TAAATTTAAAAATTA-GATAAT
1 TAAATTTAAAAATTAGGATAAT
*
18675080 TAAA-TTAAAATTTAGGATAA
1 TAAATTTAAAAATTAGGATAA
18675100 AAATTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (22 bp):
TAAATTTAAAAATTAGGATAAT
Found at i:18675801 original size:30 final size:30
Alignment explanation
Indices: 18675744--18675805 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
18675734 GCTTTTTGAA
* *
18675744 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
18675774 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
18675804 AA
1 AA
18675806 AAACAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:18682999 original size:21 final size:22
Alignment explanation
Indices: 18682965--18683043 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 22
18682955 GAATGTGCGG
18682965 ACTTCACTTTGCACTGAAGTGCC
1 ACTTCAC-TTGCACTGAAGTGCC
*
18682988 AC-TCACTTGCAC-CATAGTGCC
1 ACTTCACTTGCACTGA-AGTGCC
*
18683009 ACTTTCACTTGCACTGTAGTGCC
1 AC-TTCACTTGCACTGAAGTGCC
18683032 ACTATCACTTGC
1 ACT-TCACTTGC
18683044 GTGCTTAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.02
21 14 0.29
22 5 0.10
23 28 0.58
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (22 bp):
ACTTCACTTGCACTGAAGTGCC
Found at i:18685533 original size:21 final size:22
Alignment explanation
Indices: 18685500--18685540 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
18685490 AAATATAAGT
*
18685500 ATAAATAATATAATT-AAGAAC
1 ATAAATAACATAATTCAAGAAC
*
18685521 ATAAATAGCATAATTCAAGA
1 ATAAATAACATAATTCAAGA
18685541 GGAGAAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (22 bp):
ATAAATAACATAATTCAAGAAC
Found at i:18685664 original size:25 final size:25
Alignment explanation
Indices: 18685631--18685682 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
18685621 AAACTAATAC
* * *
18685631 AAATGATATAATCGATAAAATACAA
1 AAATAATATAATCAAGAAAATACAA
18685656 AAATAATATAATCAAGAAAATACAA
1 AAATAATATAATCAAGAAAATACAA
18685681 AA
1 AA
18685683 GTGCCATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.21
Consensus pattern (25 bp):
AAATAATATAATCAAGAAAATACAA
Found at i:18685987 original size:16 final size:17
Alignment explanation
Indices: 18685961--18685992 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
18685951 CTGAATACAT
18685961 AATAAATAAAATATAAG
1 AATAAATAAAATATAAG
18685978 AATAAA-AAAATATAA
1 AATAAATAAAATATAA
18685993 TTAAGAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AATAAATAAAATATAAG
Found at i:18695762 original size:25 final size:25
Alignment explanation
Indices: 18695734--18695796 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
18695724 AAGTGTTTTT
*
18695734 AGTATAGT-CTATCTATAGTAGTCTC
1 AGTATA-TACTATCTATAGAAGTCTC
*
18695759 AGTATATACTATCTATAGAAGTTTC
1 AGTATATACTATCTATAGAAGTCTC
*
18695784 AGGATATACTATC
1 AGTATATACTATC
18695797 AAAGACAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (25 bp):
AGTATATACTATCTATAGAAGTCTC
Found at i:18695806 original size:25 final size:25
Alignment explanation
Indices: 18695742--18695809 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
18695732 TTAGTATAGT
* * * *
18695742 CTATCTATAGTAGTCTCAGTATATA
1 CTATCTAAAGAAGTTTCAGGATATA
*
18695767 CTATCTATAGAAGTTTCAGGATATA
1 CTATCTAAAGAAGTTTCAGGATATA
18695792 CTATC-AAAGACAGTTTCA
1 CTATCTAAAGA-AGTTTCA
18695810 ATTTCAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 4 0.11
25 34 0.89
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (25 bp):
CTATCTAAAGAAGTTTCAGGATATA
Found at i:18695929 original size:15 final size:14
Alignment explanation
Indices: 18695895--18695929 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
18695885 GTAAAAAAAT
18695895 TTAAAAATCAGTTC
1 TTAAAAATCAGTTC
18695909 TTAAAAATCACG-TC
1 TTAAAAATCA-GTTC
18695923 TTAAAAA
1 TTAAAAA
18695930 CCCACATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.95
15 1 0.05
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (14 bp):
TTAAAAATCAGTTC
Found at i:18718301 original size:42 final size:42
Alignment explanation
Indices: 18718197--18718403 Score: 183
Period size: 42 Copynumber: 4.9 Consensus size: 42
18718187 GAGCCTCCAT
*
18718197 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
18718240 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
18718283 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
18718325 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
18718367 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACC
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACC
18718404 TGTCGTGCGG
Statistics
Matches: 132, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
41 15 0.11
42 65 0.49
43 41 0.31
44 11 0.08
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:18718461 original size:39 final size:42
Alignment explanation
Indices: 18718408--18718508 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
18718398 AGCACCTGTC
*
18718408 GTGC-GGAGCCTCGAGCA-C-T-GGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGAT
18718446 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGAT
*
18718488 GAGCGGGAGCCTTC-AGCACCA
1 GTGCGGGAGCC-TCGAGCACCA
18718509 AAGCTAAAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
38 4 0.07
39 13 0.23
40 1 0.02
41 1 0.02
42 35 0.62
43 2 0.04
ACGTcount: A:0.17, C:0.29, G:0.36, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGAT
Found at i:18718607 original size:13 final size:13
Alignment explanation
Indices: 18718589--18718615 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18718579 ATGTCACCTG
18718589 GTAGCACCTGGTA
1 GTAGCACCTGGTA
18718602 GTAGCACCTGGTA
1 GTAGCACCTGGTA
18718615 G
1 G
18718616 CAGCGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (13 bp):
GTAGCACCTGGTA
Found at i:18723870 original size:24 final size:24
Alignment explanation
Indices: 18723843--18723912 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
18723833 GTTAGGTTCT
* *
18723843 CGGCGGTGCTCCGGCGATTCGTCC
1 CGGCGGTGCTCTGGCGATCCGTCC
**
18723867 CGGCGGTGCTCTGGTAATCCGTCC
1 CGGCGGTGCTCTGGCGATCCGTCC
* *
18723891 CGTCGGTGCTCTGGCGAACCGT
1 CGGCGGTGCTCTGGCGATCCGT
18723913 TCCGATAGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.07, C:0.34, G:0.36, T:0.23
Consensus pattern (24 bp):
CGGCGGTGCTCTGGCGATCCGTCC
Found at i:18724117 original size:43 final size:43
Alignment explanation
Indices: 18723923--18725456 Score: 1120
Period size: 43 Copynumber: 35.9 Consensus size: 43
18723913 TCCGATAGCA
* * *
18723923 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCTTCTGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * * *
18723965 TTGGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATTGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * ** *
18724008 TAAGCCCTTGGTCATGCAAGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
18724050 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACTATCGCCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
18724093 TAGGCCCTCGGTCGTGCGAGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
18724136 TAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
18724178 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
18724221 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
18724264 TAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
18724307 TATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * ** *
18724349 TAGGTGCTGGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * ** *
18724392 TAAGCCCTTGGTCATGTAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *** * * *
18724434 TCGATGCTTCGAT-GTGTGGGAGCCTCGGGCACCATCGCCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
18724477 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * **
18724519 TCGGTGCTATGAT-GTACGAGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
18724562 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
18724604 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
18724647 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCAGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
18724690 TAAGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
18724733 TATGCCCTTGGTCGTGGGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * *
18724775 TAGGTGCTGGGAT-GAGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
18724818 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACT
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
18724860 TTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
18724903 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *** **
18724946 TAAGCCCTTGGTCGTGCGGGAGCCTCTGGCACCATCAATAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
18724989 TAGGCCCTTGGTCGTGCGAGG-GCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCAACC
* * *
18725031 TCGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *** * * * *
18725073 TTGGTGGATCGAAT-GTGCGGGAGCCTCGGACAGCATCGGC-ACC
1 TAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
18725116 TCTGTG-GCTAGGAT-GTGCGGGAGCCTCGGACACCATCGGCAA-C
1 T-AG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
18725159 TTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
18725202 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
18725245 TAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
18725288 TAGGCCATTGGTCGTGCGAGG-GCCTCGGGCACCACCGGC-ACC
1 TAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
18725330 TTGGTGGCTCGAAT-GTGCGGGAGCCTCGGGTAGTATCGGC-ACC
1 TAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
18725373 TTGGTGGCTAGGAT-GTGCCGGAGCCTCGGACACCATCAGCAA-C
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
18725416 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
18725457 CCTTGGTACC
Statistics
Matches: 1171, Mismatches: 274, Indels: 93
0.76 0.18 0.06
Matches are distributed among these distances:
41 3 0.00
42 384 0.33
43 773 0.66
44 10 0.01
45 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:18724171 original size:128 final size:127
Alignment explanation
Indices: 18723923--18725459 Score: 1069
Period size: 128 Copynumber: 12.0 Consensus size: 127
18723913 TCCGATAGCA
* * * * * ** * *
18723923 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCTTCTGC-ACCTTGGTGCTAGGAT-GTGCAGGA
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * * * * *
18723986 GCCCCGGACACCATTGGCAAACTAAGCCCTTGGTCATGCAAGAGCCTCGGGCGCCATCGGCACC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
* * * * * * *
18724050 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACTATCGCCAACCTAGGCCCTCGGTCGTGCGAGA
1 TAGGCGCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* ** *
18724114 GCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGGCACC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
* * * * *
18724178 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCGCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * * * **
18724242 GGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGG-CACC
* * * * * ** *
18724307 TATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGC-CCCTAGGTGCTGGGAT-GTGCGGGA
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
** * * * * *
18724370 GCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGTAGGAGCCTCGGGCGCCATCGGCACC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG-CGGAGCCTCGGGCACCATCGGCACC
* ** * * *
18724434 TCGATGCTTCGAT-GTGTGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCGCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * ** * * * **
18724498 GCCTCGGGCACCATCGG-TACCTCGGTGCTATGAT-GTACGAGAGCCTCGGACACTGTCGGCAAC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCG-GAGCCTCGGGCACCATCGGC-AC
18724561 C
127 C
* * * * ** *
18724562 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * *
18724625 ACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCAGCAAAC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGC-ACC
* ** * *
18724690 TAAGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATATGCCCTTGGTCGTGGGGGAG
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * ** * * * *
18724755 CCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GAGCGGGAGCCTCGGACACCATCGGCAAAC
66 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGGC-ACC
* * * * * **
18724818 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACTTTGGTGCTTGGAT-GTGCGGGA
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * *
18724881 ACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAAAC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGC-ACC
* * * *** **
18724946 TAAGCCCTTGGTCGTGCGGGAGCCTCTGGCACCATCAATAAAATAGGCCCTTGGTCGTGCGAGG-
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGA
* * * *
18725010 GCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGTACC
65 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
* * * * * * * * * *
18725073 TTGGTGGATCGAAT-GTGCGGGAGCCTCGGACAGCATCGGC-ACCTCTGTG-GCTAGGAT-GTGC
1 TAGG-CGCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCTTGG-TCGTGC
* * ** *
18725134 GGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGG
61 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGG
18725197 CAACC
124 C-ACC
* * * * * *
18725202 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAG
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** * * *
18725267 CCTCGGGCACCATCGGCAAAATAGGCCATTGGTCGTGCGAGGGCCTCGGGCACCACCGGCACC
66 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCACC
* * * * * ** * ** * *
18725330 TTGGTGGCTCGAAT-GTGCGGGAGCCTCGGGTAGTATCGGC-ACCTTGGTGGCTAGGAT-GTGCC
1 TAGG-CGCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * **
18725392 GGAGCCTCGGACACCATCAGCAA-CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGG
62 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCA-CCATCGG
18725455 CACC
124 CACC
18725459 T
1 T
18725460 TGGTACCTGG
Statistics
Matches: 1099, Mismatches: 257, Indels: 106
0.75 0.18 0.07
Matches are distributed among these distances:
126 1 0.00
127 164 0.15
128 728 0.66
129 202 0.18
130 4 0.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (127 bp):
TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCACC
Found at i:18724196 original size:85 final size:85
Alignment explanation
Indices: 18724027--18725459 Score: 1180
Period size: 85 Copynumber: 16.8 Consensus size: 85
18724017 GGTCATGCAA
* * ** * * *
18724027 GAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACTATCGCCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-
** * *
18724090 ACCTAGGCCCTCGG-TCGTGCGA
64 ACCTAGGTGCTTGGAT-GTGCGG
* ** * *
18724112 GAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
18724177 CTTGGTGCTTGGATGTGCGA
66 CTAGGTGCTTGGATGTGCGG
* * *
18724197 GAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * ** *
18724262 ACTAAGCCCTTGG-TCGTGCGA
65 CCTAGGTGCTTGGAT-GTGCGG
* * ** * * * *
18724283 GAGCCTCAGGCACCATCGGTAAAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCCC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
*
18724348 CTAGGTGCTGGGATGTGCGG
66 CTAGGTGCTTGGATGTGCGG
** * * * ** *
18724368 GAGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGTAGGAGCCTCGGGCGCCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * *
18724433 CTCGATGCTTCGATGTGTGG
66 CTAGGTGCTTGGATGTGCGG
* *
18724453 GAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
18724518 CTCGGTGCTAT-GATGTACGA
66 CTAGGTGCT-TGGATGTGCGG
* ** * *
18724538 GAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
18724603 CTTGGTGCTTGGATGTGCGA
66 CTAGGTGCTTGGATGTGCGG
* * * * *
18724623 GAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCAGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * *
18724688 ACTAAGCGCTTGG-TCGTGCGG
65 CCTAGGTGCTTGGAT-GTGCGG
** * * * *
18724709 GAGCCTCGGGCACCATCGGCAAAATATGCCCTTGGTCGTGGGGGAGCCTCGGCCACCATCGGCCC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
18724774 CTAGGTGCTGGGATGAGCGG
66 CTAGGTGCTTGGATGTGCGG
* * * *
18724794 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
18724859 TTTGGTGCTTGGATGTGCGG
66 CTAGGTGCTTGGATGTGCGG
* * * *
18724879 GAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * **
18724944 ACTAAGCCCTTGG-TCGTGCGG
65 CCTAGGTGCTTGGAT-GTGCGG
* *** ** *
18724965 GAGCCTCTGGCACCATCAATAAAATAGGCCCTTGGTCGTGCGAGG-GCCTCGGCCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCA
* **
18725029 CCTCGGCCCTTGG-TCGTGCGG
65 CCTAGGTGCTTGGAT-GTGCGG
* * * *** * * * *
18725050 GAGGCTCGGGCACCATCGG-TACCTTGGTGGATCGAAT-GTGCGGGAGCCTCGGACAGCATCGGC
1 GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGC
** *
18725113 ACCTCTGTGGCTAGGATGTGCGG
64 ACCTAGGT-GCTTGGATGTGCGG
* * ** *
18725136 GAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-
** *
18725199 ACCTAGGCCCTTGG-TCGTGCGA
64 ACCTAGGTGCTTGGAT-GTGCGG
* * * *
18725221 GAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
** *
18725286 AATAGG-CCATTGG-TCGTGCGAG
65 CCTAGGTGC-TTGGAT-GTGCG-G
* * ** * * * **
18725308 G-GCCTCGGGCACCACCGGC-ACCTTGGTGGCTCGAAT-GTGCGGGAGCCTCGGGTAGTATCGGC
1 GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGC
* * *
18725370 ACCTTGGTGGCTAGGATGTGCCG
64 ACCTAGGT-GCTTGGATGTGCGG
* * * **
18725393 GAGCCTCGGACACCATCAGCAA-CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGC
18725456 ACCT
64 ACCT
18725460 TGGTACCTGG
Statistics
Matches: 1082, Mismatches: 230, Indels: 71
0.78 0.17 0.05
Matches are distributed among these distances:
84 8 0.01
85 666 0.62
86 400 0.37
87 8 0.01
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTAGGTGCTTGGATGTGCGG
Found at i:18724735 original size:426 final size:426
Alignment explanation
Indices: 18724109--18724939 Score: 1410
Period size: 426 Copynumber: 2.0 Consensus size: 426
18724099 CTCGGTCGTG
*
18724109 CGAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGG
1 CGAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGA
*
18724174 CACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
66 CACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
* *
18724239 AGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTA
131 AGAGGCTCGGGCACCATCAGCAAACTAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCA
*
18724304 AAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCCCCTAGGTGCTGGGATGTGCGGG
196 AAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCCCCTAGGTGCTGGGATGAGCGGG
* * * *
18724369 AGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGTAGGAGCCTCGGGCGCCATCGGCACC
261 AGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACC
* * *
18724434 TCGATGCTTCGATGTGTGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAG
326 TCGATGCTTCGATGTGCGGGAACCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGAGAG
18724499 CCTCGGGCACCATCGGTACCTCGGTGCTATGATGTA
391 CCTCGGGCACCATCGGTACCTCGGTGCTATGATGTA
*
18724535 CGAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGA
1 CGAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGA
18724600 CACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
66 CACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
* * *
18724665 AGAGGCTCGGGCACCATCAGCAAACTAAGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
131 AGAGGCTCGGGCACCATCAGCAAACTAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCA
* *
18724730 AAATATGCCCTTGGTCGTGGGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGAGCGGG
196 AAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCCCCTAGGTGCTGGGATGAGCGGG
* * * * *
18724795 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACT
261 AGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACC
* * * *
18724860 TTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG
326 TCGATGCTTCGATGTGCGGGAACCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGAGAG
*
18724925 GCTCGGGCACCATCG
391 CCTCGGGCACCATCG
18724940 ACAAACTAAG
Statistics
Matches: 377, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
426 377 1.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (426 bp):
CGAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGA
CACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
AGAGGCTCGGGCACCATCAGCAAACTAAGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCA
AAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCCCCTAGGTGCTGGGATGAGCGGG
AGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACC
TCGATGCTTCGATGTGCGGGAACCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGAGAG
CCTCGGGCACCATCGGTACCTCGGTGCTATGATGTA
Found at i:18725195 original size:299 final size:298
Alignment explanation
Indices: 18723940--18725463 Score: 1256
Period size: 299 Copynumber: 5.1 Consensus size: 298
18723930 TTGGTCGTGT
* * * * * * * * * *
18723940 GGGAGCCTCGGGCACCTTCTGCACCTTGGTGCTAGGATGTGCAGGAGCCCCGGACACCATTGGCA
1 GGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGCA
* * * * * * * ** ** * *
18724005 AACTAAGCCCTTGGTCATGCAAGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCG
66 ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTT-GGTCGTACG
* ** * * * **
18724068 GGAGCCTCGGGCACTATC-GCCAACCTAGGCCCTCGGTCGTGCGAGAGCCTCGGACACTGTCGGC
130 GGAGCCTCGGGCACCATCAG-CAAAATAGGCCCTTGGTCGTGCGAGGGCCTCGGGCACCATCGGC
* * *
18724132 AACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCG
194 -ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGATGTGCG
* * * * * *
18724196 AGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC
258 GGAGCCTCGGACACCATCGGCAA-CTTGGCGCTAGGAT-GTGC
* * * ** ** * * *
18724238 GAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGG
1 GGGAGCCTCGGACACCATCGGC-AACTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGG
* ** * * * * * ** * ** * *
18724302 TAAAATATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCAGC-CCCTAGGTGCTGGGAT-GTG
64 CAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTA
** * * * * * *
18724365 CGGGAGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATG-TAGGAGCCTCGGGCGCCATCG
128 CGGGAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGGTCGTGCGAGG-GCCTCGGGCACCATCG
* *** * * * * ** *
18724429 GCACCTCGATGCTTCGAT-GTGTGGGAGCCTCGGGCACCATCGCCAACCTAGG-CCCTTGG-TCG
192 GCACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT-G
* * * * * * *
18724491 TGCGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTATGATGTAC
254 TGCGGGAGCCTCGGACACCATCGGCAACTTGGCGCTAGGATGTGC
* ** * ** * * *
18724536 GAGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGA
1 GGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGG
* ** ** * *
18724600 C-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTA
64 CAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTA
* * * * *
18724663 CGAGAGGCTCGGGCACCATCAGCAAACTAAGCGCTTGGTCGTGCG-GGAGCCTCGGGCACCATCG
128 CGGGAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGGTCGTGCGAGG-GCCTCGGGCACCATCG
** * * * * * * *
18724727 GCAAAATATGCCCTTGGTCGTGGGGGAGCCTCGGCCACCATCGGCCCCTAGGT-GCTGGGATGAG
192 GC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGATGTG
* * *
18724791 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGC
256 CGGGAGCCTCGGACACCATCGGC-AACTTGGCGCTAGGAT-GTGC
*
18724835 GGGAGCCTC-GAGCACCATCGAC-ACTTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGG
1 GGGAGCCTCGGA-CACCATCGGCAAC-TTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGG
* *
18724898 CAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAAACTAAGCCCTTGGTCGTGC
64 CAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTAC
* ** *
18724963 GGGAGCCTCTGGCACCATCAATAAAATAGGCCCTTGGTCGTGCGAGGGCCTCGGCCACCATCGGC
129 GGGAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGGTCGTGCGAGGGCCTCGGGCACCATCGGC
* * * * * *
18725028 ACCTCGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGTACCTTGGTGGATCGAATGTGCGG
194 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGATGTGCGG
* *
18725093 GAGCCTCGGACAGCATCGGCACCTCTGTG-GCTAGGATGTGC
259 GAGCCTCGGACACCATCGGCAACT-TG-GCGCTAGGATGTGC
18725134 GGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGCA
1 GGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGCA
18725199 ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGG
66 ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGG
* * *
18725264 GAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTCGTGCGAGGGCCTCGGGCACCACCGGCAC
131 GAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGGTCGTGCGAGGGCCTCGGGCACCATCGGCAC
* ** * * * ** *
18725329 CTTGGTGGCTCGAAT-GTGCGGGAGCCTCGGGTAGTATCGGCACCTTGGTGGCTAGGATGTGCCG
196 CTAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGATGTGCGG
* * *
18725393 GAGCCTCGGACACCATCAGCAACTTGGTGCTTGGATGTGC
259 GAGCCTCGGACACCATCGGCAACTTGGCGCTAGGATGTGC
* *
18725433 GGGAGCCTCGGGCACCCATCGGCACCTTGGT
1 GGGAGCCTCGGACA-CCATCGGCAACTTGGT
18725464 ACCTGGGATG
Statistics
Matches: 991, Mismatches: 198, Indels: 72
0.79 0.16 0.06
Matches are distributed among these distances:
297 34 0.03
298 299 0.30
299 569 0.57
300 88 0.09
301 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (298 bp):
GGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGG
GAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGGTCGTGCGAGGGCCTCGGGCACCATCGGCAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGATGTGCGGGA
GCCTCGGACACCATCGGCAACTTGGCGCTAGGATGTGC
Found at i:18731519 original size:24 final size:24
Alignment explanation
Indices: 18731492--18731544 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
18731482 CCGGTTAGGT
18731492 TCCCGGCAGTGCTCCGGCGATCCG
1 TCCCGGCAGTGCTCCGGCGATCCG
* *
18731516 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCAGTGCTCCGGCGATCCG
18731540 TCCCG
1 TCCCG
18731545 TTGATGCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.06, C:0.42, G:0.34, T:0.19
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGCGATCCG
Found at i:18731552 original size:24 final size:24
Alignment explanation
Indices: 18731492--18731564 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
18731482 CCGGTTAGGT
18731492 TCCCGGC-AGTGCTCCGGCGATCCG
1 TCCCGGCGA-TGCTCCGGCGATCCG
* *
18731516 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCGATGCTCCGGCGATCCG
** *
18731540 TCCCGTTGATGCTCCGGCGAACCG
1 TCCCGGCGATGCTCCGGCGATCCG
18731564 T
1 T
18731565 TCCAGTAGCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.08, C:0.38, G:0.33, T:0.21
Consensus pattern (24 bp):
TCCCGGCGATGCTCCGGCGATCCG
Found at i:18731724 original size:85 final size:85
Alignment explanation
Indices: 18731575--18731931 Score: 482
Period size: 85 Copynumber: 4.2 Consensus size: 85
18731565 TCCAGTAGCA
* * * *
18731575 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
18731640 CCCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAACC
* * * * *
18731660 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
18731725 CTCGGGCACCATCGCCAACC
66 CTCGGACACCATCGGCAACC
*
18731745 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
**
18731809 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* ** * ** *
18731830 TAGGCCCATGGTCGTGCGGGAGCCTCGAACACCATCGGCAGCTTAGTGCTTGGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
18731895 CTCGGGCACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
18731915 TAGGCCCTTGGTCGTGC
1 TAGGCCCTTGGTCGTGC
18731932 CAAAGTCTAG
Statistics
Matches: 236, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
84 1 0.00
85 234 0.99
86 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:18731773 original size:43 final size:43
Alignment explanation
Indices: 18731575--18731931 Score: 318
Period size: 42 Copynumber: 8.4 Consensus size: 43
18731565 TCCAGTAGCA
*
18731575 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
18731617 TTGGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
18731660 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
18731702 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGCCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
18731745 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
18731787 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
18731830 TAGGCCCATGGTCGTGCGGGAGCCTCGAACACCATCGGCAGCT
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
18731873 TAGTG--CTTGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACC
1 TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
18731915 TAGGCCCTTGGTCGTGC
1 TAGGCCCTTGGTCGTGC
18731932 CAAAGTCTAG
Statistics
Matches: 243, Mismatches: 58, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.00
42 127 0.52
43 114 0.47
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:18733493 original size:29 final size:28
Alignment explanation
Indices: 18733370--18733501 Score: 102
Period size: 30 Copynumber: 4.5 Consensus size: 28
18733360 TGGTTGACCC
* ** *
18733370 ATCCCTTTCCATAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAA-TTGATAGTCGAA-CT
* * *
18733400 ATCCCTTTTCATAGTTCAACAGTCGAAGCT
1 ATCCCTTTTCATAATT-GATAGTCGAA-CT
* * *
18733430 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAA-TTGATAGTCG-AACT
18733460 ATCCCTTTTCATAATTGATAGTCGAATCT
1 ATCCCTTTTCATAATTGATAGTCGAA-CT
*
18733489 TTCCCTTTTCATA
1 ATCCCTTTTCATA
18733502 GATCTATGAT
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 24 0.30
30 53 0.65
31 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (28 bp):
ATCCCTTTTCATAATTGATAGTCGAACT
Found at i:18734685 original size:341 final size:340
Alignment explanation
Indices: 18734029--18734714 Score: 1291
Period size: 341 Copynumber: 2.0 Consensus size: 340
18734019 TTTTCTACCA
18734029 TAAAACATCAAAACAACATAATATCATTCATGGAAAACCCTAACCTTTTAATAATTTTACAAATT
1 TAAAACATCAAAACAACATAATATCATTCATGGAAAACCCTAACCTTTTAATAATTTTACAAATT
*
18734094 AGTCCCTGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGGA
66 AGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGGA
*
18734159 TAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCGAACCTTCAAAGCACAATATGGTGTTTTCT
131 TAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTCT
18734224 TTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACTT
196 TTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACTT
18734289 AATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCATA
261 AATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCATA
18734354 AATGTCCACTCAAAT
326 AATGTCCACTCAAAT
* *
18734369 TAAAACATCAAAGCAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATACTTTTACAAAT
1 TAAAACATCAAAACAACATAATATCATTCATGG-AAAACCCTAACCTTTTAATAATTTTACAAAT
*
18734434 TAGTCCCCGTGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
65 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
*
18734499 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCTAAACCTTCAAAGCACAATATGGTGTTTTC
130 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
* *
18734564 TTTCTCCAAAAATCGGTGAAATAAGGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
195 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
18734629 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
260 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
18734694 AAATGTCCACTCAAAT
325 AAATGTCCACTCAAAT
18734710 TAAAA
1 TAAAA
18734715 ATGGTCTATT
Statistics
Matches: 337, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
340 32 0.09
341 305 0.91
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (340 bp):
TAAAACATCAAAACAACATAATATCATTCATGGAAAACCCTAACCTTTTAATAATTTTACAAATT
AGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGGA
TAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTCT
TTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACTT
AATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCATA
AATGTCCACTCAAAT
Found at i:18736271 original size:50 final size:50
Alignment explanation
Indices: 18736192--18736433 Score: 238
Period size: 50 Copynumber: 4.9 Consensus size: 50
18736182 CATTTGGGTA
* * *
18736192 AAGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* *
18736242 AAGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* ** * *
18736292 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* ** * * * * * * *
18736342 GAGAACTCCTATGTAAGACCATATCTGGGATATAGTATTGGCAGTACAGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCAAGAT
* * *
18736393 AACA--TCCCATGTAAGACCATTTCTGGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
18736434 TGTTATTATC
Statistics
Matches: 158, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 31 0.20
50 122 0.77
51 2 0.01
52 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
Found at i:18741753 original size:47 final size:47
Alignment explanation
Indices: 18741684--18741810 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
18741674 ATTGCATTAT
* * * * * * * *
18741684 TGGCAGCTTGTCTACATATATTGGCATTTTATTTGCATTATCGTTAC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
18741731 TGGCAGCTTGTCTGTATATATTGACAATTTATCTACATTACCATCAT
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
18741778 TGGCAGCTTGTTTGCATATATTGAGAATTTATC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATC
18741811 CGCACTACCG
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (47 bp):
TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
Found at i:18743674 original size:30 final size:29
Alignment explanation
Indices: 18743614--18743696 Score: 123
Period size: 30 Copynumber: 2.9 Consensus size: 29
18743604 CAAAAACTTA
* * *
18743614 TATTCGTCATAATGAA-GTTTTAGCTTTT
1 TATTCGCCATAATGAATTTTTTGGCTTTT
18743642 TATTCGCCATAATGAATTTTTTGGCTTTTT
1 TATTCGCCATAATGAATTTTTTGGC-TTTT
18743672 TATTCGCCATAATGAATTTTTTGGC
1 TATTCGCCATAATGAATTTTTTGGC
18743697 ACTCCATCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 15 0.30
29 6 0.12
30 29 0.58
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.49
Consensus pattern (29 bp):
TATTCGCCATAATGAATTTTTTGGCTTTT
Found at i:18743924 original size:20 final size:20
Alignment explanation
Indices: 18743886--18743924 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18743876 AAATAAAAAA
* *
18743886 ATATTTTTTCATTACTTTAT
1 ATATTTTTTAATAACTTTAT
*
18743906 ATATTTTTTAATAATTTTA
1 ATATTTTTTAATAACTTTA
18743925 ATAATTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATATTTTTTAATAACTTTAT
Found at i:18751122 original size:21 final size:21
Alignment explanation
Indices: 18751104--18751144 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18751094 AACAAAATAG
18751104 TAAAACATAATACTGAAATGA
1 TAAAACATAATACTGAAATGA
* *
18751125 TAGAACATAATAGTGAAATG
1 TAAAACATAATACTGAAATG
18751145 GTAGCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.07, G:0.15, T:0.24
Consensus pattern (21 bp):
TAAAACATAATACTGAAATGA
Found at i:18751195 original size:21 final size:22
Alignment explanation
Indices: 18751171--18751219 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
18751161 AAAGAAAAAG
18751171 AAAATAGCA-AAAAACAGTAAA
1 AAAATAGCAGAAAAACAGTAAA
* *
18751192 AAAA-AGCAGGAAAATAGTAAA
1 AAAATAGCAGAAAAACAGTAAA
*
18751213 AAGATAG
1 AAAATAG
18751220 TAGTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 17 0.74
22 2 0.09
ACGTcount: A:0.67, C:0.06, G:0.16, T:0.10
Consensus pattern (22 bp):
AAAATAGCAGAAAAACAGTAAA
Found at i:18756070 original size:13 final size:13
Alignment explanation
Indices: 18756052--18756081 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18756042 CAATAAAGAG
*
18756052 ATATATAATTTAT
1 ATATATAAGTTAT
18756065 ATATATAAGTTAT
1 ATATATAAGTTAT
18756078 ATAT
1 ATAT
18756082 GTTATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATATATAAGTTAT
Found at i:18763614 original size:21 final size:20
Alignment explanation
Indices: 18763590--18763638 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
18763580 TAAATTTAAC
*
18763590 TCAATTTAATACAATTCATAT
1 TCAATTTAATACAATCCA-AT
* *
18763611 TCAATTCAATCCAATCCAAT
1 TCAATTTAATACAATCCAAT
18763631 TCATATTT
1 TCA-ATTT
18763639 TAGGCAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (20 bp):
TCAATTTAATACAATCCAAT
Found at i:18765140 original size:27 final size:27
Alignment explanation
Indices: 18765110--18765262 Score: 144
Period size: 27 Copynumber: 5.7 Consensus size: 27
18765100 TCAGAACATG
* **
18765110 CCACAAAGGCTATTCTTTTAGAGTATT
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * * **
18765137 CCACAAATGTTATTCTTTTAGAGTATG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * *
18765164 CCACAAAAGCTATTCTTTCATAGTACG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* ** *
18765191 CCATAAAGATTATTCTTTCATAGTACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
* *
18765218 CCACAAAGGTTATTCTTTCAGAGAACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
*
18765245 CCATAAAGGCTATTCTTT
1 CCACAAAGGCTATTCTTT
18765263 TAAAATACGC
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTACA
Found at i:18765249 original size:54 final size:53
Alignment explanation
Indices: 18765109--18765285 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 53
18765099 ATCAGAACAT
* * ** * * *
18765109 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
* * * *
18765163 GCCACAAAAGCTATTCTTTCATAGTACGCCATAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAG-TTATTCTTTTAAAGTAC
* * * * * *
18765217 ACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
*
18765271 GCCACAAAAGTTATT
1 GCCACAAAAGCTATT
18765286 TCTTAGCTGT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (53 bp):
GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAGTTATTCTTTTAAAGTAC
Found at i:18765285 original size:27 final size:27
Alignment explanation
Indices: 18765109--18765285 Score: 122
Period size: 27 Copynumber: 6.6 Consensus size: 27
18765099 ATCAGAACAT
* * * * *
18765109 GCCACAAAGGCTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * *
18765136 TCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
18765163 GCCACAAAAGCTATTCTTTCATAGTAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
18765190 GCCA-TAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAG-TTATTCTTTCAAAGTAC
* * * *
18765217 ACCACAAAGGTTATTCTTTCAGAGAAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * * *
18765244 ACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
18765271 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
18765286 TCTTAGCTGT
Statistics
Matches: 122, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.03
27 115 0.94
28 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (27 bp):
GCCACAAAAGTTATTCTTTCAAAGTAC
Found at i:18765285 original size:81 final size:81
Alignment explanation
Indices: 18765109--18765285 Score: 185
Period size: 81 Copynumber: 2.2 Consensus size: 81
18765099 ATCAGAACAT
* * * ** * * * **
18765109 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTATGCCACAAAAGC
1 GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
* *
18765174 TATTCTTTCATAGTAC
66 TATTCTTTCAAAATAC
* * * *
18765190 GCCA-TAAAGATTATTCTTTCATAGTACACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGG
1 GCCACAAAAG-TTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAG
*
18765254 CTATTCTTTTAAAATAC
65 CTATTCTTTCAAAATAC
18765271 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
18765286 TCTTAGCTGT
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
80 3 0.04
81 69 0.91
82 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (81 bp):
GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
TATTCTTTCAAAATAC
Found at i:18766756 original size:27 final size:27
Alignment explanation
Indices: 18766697--18766756 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
18766687 CAACCAATAG
*
18766697 AGTCTGTCGAGATATTAAAAGCGAGGC
1 AGTCTGTCGAGATAGTAAAAGCGAGGC
* *
18766724 AATCTGTCGAGATAGTAAACA-CGAGGT
1 AGTCTGTCGAGATAGTAAA-AGCGAGGC
18766751 AGTCTG
1 AGTCTG
18766757 CTAGAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.23
Consensus pattern (27 bp):
AGTCTGTCGAGATAGTAAAAGCGAGGC
Found at i:18772182 original size:4 final size:4
Alignment explanation
Indices: 18772175--18772221 Score: 73
Period size: 4 Copynumber: 12.5 Consensus size: 4
18772165 TCAGTCACCC
18772175 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC- TT-T TTCT TTC- TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
18772220 TT
1 TT
18772222 TTATTTTACA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 7 0.17
4 33 0.82
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:18779078 original size:21 final size:20
Alignment explanation
Indices: 18779039--18779078 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
18779029 ATCATATAAA
*
18779039 TTAAAAATTACAATTATTTT
1 TTAAAAATTACAATGATTTT
*
18779059 TTAAAAATTTATAATGATTT
1 TTAAAAA-TTACAATGATTT
18779079 ATCAAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (20 bp):
TTAAAAATTACAATGATTTT
Found at i:18781235 original size:21 final size:21
Alignment explanation
Indices: 18781202--18781252 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
18781192 TAAATGTCCT
* *
18781202 TAGATATAATAAAAATGAAAAA
1 TAGATAT-TTAAAAAAGAAAAA
*
18781224 TAGATATTTAAAAAAGATAAA
1 TAGATATTTAAAAAAGAAAAA
*
18781245 CAGATATT
1 TAGATATT
18781253 AATTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (21 bp):
TAGATATTTAAAAAAGAAAAA
Found at i:18782475 original size:30 final size:30
Alignment explanation
Indices: 18782441--18782503 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
18782431 ACTTAACAAG
18782441 CAAATGCATATAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
* *
18782471 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
18782501 CAA
1 CAA
18782504 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCATATAAAATAATAACAAAATTAA
Found at i:18785213 original size:26 final size:26
Alignment explanation
Indices: 18785184--18785235 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18785174 ATTTTTTTTA
18785184 ATAA-ATTTAGAATTTTTTAAAAATAT
1 ATAAGATTTAG-ATTTTTTAAAAATAT
* *
18785210 ATAAGTTTTAGATTTTTTATAAATAT
1 ATAAGATTTAGATTTTTTAAAAATAT
18785236 TTTGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (26 bp):
ATAAGATTTAGATTTTTTAAAAATAT
Found at i:18785728 original size:12 final size:12
Alignment explanation
Indices: 18785711--18785735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18785701 TAGGTCACTG
18785711 TTTCTTTTCTTT
1 TTTCTTTTCTTT
18785723 TTTCTTTTCTTT
1 TTTCTTTTCTTT
18785735 T
1 T
18785736 CCCGATTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTCTTTTCTTT
Done.