Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 75 of 207
Found at i:21814766 original size:7 final size:7
Alignment explanation
Indices: 21814754--21814793 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
21814744 CAAAAGAGTG
21814754 ATGAAAA
1 ATGAAAA
21814761 ATG-AAA
1 ATGAAAA
21814767 ATG-AAA
1 ATGAAAA
21814773 ATGAAAA
1 ATGAAAA
21814780 ATGAAAA
1 ATGAAAA
21814787 ATGAAAA
1 ATGAAAA
21814794 TGGAGAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:21814769 original size:6 final size:6
Alignment explanation
Indices: 21814758--21814795 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
21814748 AGAGTGATGA
21814758 AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAATG
21814796 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.58
7 13 0.42
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:21814770 original size:13 final size:13
Alignment explanation
Indices: 21814754--21814795 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
21814744 CAAAAGAGTG
21814754 ATGAAAAATGAAA
1 ATGAAAAATGAAA
21814767 ATG-AAAATGAAAA
1 ATGAAAAATG-AAA
21814780 ATGAAAAATGAAA
1 ATGAAAAATGAAA
21814793 ATG
1 ATG
21814796 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:21816135 original size:87 final size:87
Alignment explanation
Indices: 21815989--21817016 Score: 1741
Period size: 87 Copynumber: 11.8 Consensus size: 87
21815979 AGATCAGTGA
* *
21815989 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
21816054 CTTCCTACGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
21816076 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
21816141 CTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
21816163 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
21816228 CTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
21816250 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
21816315 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
21816337 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
21816402 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
21816424 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
21816489 CTTCTTGCGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
21816511 AGATCGAAAACAAAGCCTTGCATCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
21816576 ATTCCTACGTTAACAGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
21816598 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTAGAGCTAGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
21816663 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
21816685 AGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
21816750 CTTCCTGCGTTAACGGCGAAAC
66 CTTCCTGCGTTAACAGCGAAGC
*
21816772 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
21816837 CTTCCTGCGTTAACAGCGAAAC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
21816859 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGTTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
21816924 CTTCCTGCGTTAACAGCGAAAC
66 CTTCCTGCGTTAACAGCGAAGC
*
21816946 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
21817011 CTTCCT
66 CTTCCT
21817017 AAGCGCTAGC
Statistics
Matches: 885, Mismatches: 56, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 885 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:21817190 original size:44 final size:43
Alignment explanation
Indices: 21817136--21817409 Score: 242
Period size: 44 Copynumber: 6.4 Consensus size: 43
21817126 AAATTACAAG
*
21817136 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGAC-TAAGAAACCAA
* *
21817180 TCCTATCTCTCTGAAGTTGCAGTGGAGCAGA-TTA-AAACCATAGA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAACC--A-A
* * * * *
21817224 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCA-TATCCAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAACCAA
*
21817265 TCTTATCTC-CTTGAAGTTG-AGTGGAGCAGACGAAGAAACCAA
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGACTAAGAAACCAA
* * * * * *
21817307 TCCTATCTCCCTGAAGTTGCAATGGAGCGGATTAAG-ACCACAGA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAAC-CA-A
* * * *
21817351 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCA-TATCCAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAACCAA
*
21817392 TCTTATCTCCCTGAAGTT
1 TCTTATCTCTCTGAAGTT
21817410 ACAGCAGAGA
Statistics
Matches: 190, Mismatches: 29, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
40 11 0.06
41 41 0.22
42 26 0.14
43 20 0.11
44 92 0.48
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (43 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAACCAA
Found at i:21817362 original size:127 final size:129
Alignment explanation
Indices: 21817134--21817409 Score: 450
Period size: 127 Copynumber: 2.2 Consensus size: 129
21817124 AGAAATTACA
*
21817134 AGTCTTATCT-CTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCTCTGAAGTT
1 AGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
* *
21817198 GCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
65 GCAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
*
21817263 AGTCTTATCTCCTTGAAGTTG-AGTGGAGCAGAC-GAAGAAACCAATCCTATCTCCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
* *
21817326 CAATGGAGCGGATTAAGACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
66 CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
* *
21817390 AATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCTTGAAGTT
21817410 ACAGCAGAGA
Statistics
Matches: 138, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
127 106 0.77
128 12 0.09
129 18 0.13
130 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (129 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
Found at i:21817405 original size:85 final size:82
Alignment explanation
Indices: 21817136--21817409 Score: 239
Period size: 85 Copynumber: 3.2 Consensus size: 82
21817126 AAATTACAAG
* * * * * * *
21817136 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAATAGAGCAG--ATAAG-ACCCAGTCTTATCTCTCTGAAGTTGCA
*
21817201 GTGGAGCAGATTAAAACCATAGA
63 GTGGAGCAGATCAAAACC--A-A
* * * * *
21817224 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCCAGTCTTATCTC-CTTGAAGTTG-AGT
1 TCTTATCTCCCTGAAGTTGCAATAGAGCAGATAAGACCCAGTCTTATCTCTC-TGAAGTTGCAGT
21817287 GGAGCAGA-CGAAGAAACCAA
65 GGAGCAGATC--A-AAACCAA
* * *
21817307 TCCTATCTCCCTGAAGTTGCAATGGAGCGGATTAAGACCACAGATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAATAGAGCAGA-TAAGACC-CAG-TCTTATCTCTCTGAAGTTGCA
* * *
21817372 GTAGAGCAGATCATATCCAA
63 GTGGAGCAGATCAAAACCAA
21817392 TCTTATCTCCCTGAAGTT
1 TCTTATCTCCCTGAAGTT
21817410 ACAGCAGAGA
Statistics
Matches: 156, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
83 27 0.17
84 17 0.11
85 46 0.29
86 25 0.16
87 11 0.07
88 30 0.19
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (82 bp):
TCTTATCTCCCTGAAGTTGCAATAGAGCAGATAAGACCCAGTCTTATCTCTCTGAAGTTGCAGTG
GAGCAGATCAAAACCAA
Found at i:21821668 original size:238 final size:236
Alignment explanation
Indices: 21821201--21821669 Score: 663
Period size: 238 Copynumber: 2.0 Consensus size: 236
21821191 TTTTAGGATA
* *
21821201 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGGCTCAATTGCCACTACTTAATATTCATATGAT
1 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
* * * *
21821266 AAGGTCATCTTACTTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTTCTTTGT
66 AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
* * * *
21821331 GTGTGTTTCATTTTAGTGAAATACCAAAAAAATTATACTAAAATGGATGTTCTCTCTTTTGTTAA
131 GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
**
21821396 AAATGCTGGAAAGATAGGTTTTGCTGCAAAAGAGATAATTT
196 AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
* * * * *
21821437 TGTTTTCTAAAGAATTGATCTTTGAGGGCTATA-ACTAAACTTTGTCAGTATTTAATATTTATAT
1 TGTTTTCT-AAGAATTGACCTTTGAGGGCTATAGACTAAA--TTGCCACTACTTAATATTCATAT
* *
21821501 GGTAAGATAATCTTAATTAGATCCTTGGCTTCA-TTCTTGGTTTCAATATGTAAAGGTTGTTCCT
63 GATAAGATAATCTTAATTAGATCCTTGGCCTCACTT-TTGGTTTCAATATGTAAAGGTTGTTCCT
* * * * *
21821565 TTGTGTGTGTTTCATTGTAATGAAATTCCAAGACAATGATACTAAAATGGTTGTTGTCTCTTTTG
127 TTGTGTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTG
*
21821630 TGAAAAATGCTGGAAAGATCGCATTTGCTGCAAAAGAGAT
192 TGAAAAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGAT
21821670 CGATGTGGGA
Statistics
Matches: 204, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
236 12 0.06
237 25 0.12
238 167 0.82
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (236 bp):
TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
Found at i:21831661 original size:14 final size:14
Alignment explanation
Indices: 21831642--21831670 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
21831632 GAATGAGAAG
21831642 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
21831656 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
21831670 A
1 A
21831671 GCAAAACGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.41, G:0.14, T:0.21
Consensus pattern (14 bp):
ACCTGTGATCCCCA
Found at i:21833787 original size:17 final size:18
Alignment explanation
Indices: 21833755--21833788 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21833745 AGAACTCGAA
*
21833755 TGATTTAAACTCAAAATC
1 TGATTCAAACTCAAAATC
21833773 TGATTCAAA-TCAAAAT
1 TGATTCAAACTCAAAAT
21833789 GGCCGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (18 bp):
TGATTCAAACTCAAAATC
Found at i:21838839 original size:25 final size:26
Alignment explanation
Indices: 21838809--21838926 Score: 112
Period size: 26 Copynumber: 4.5 Consensus size: 26
21838799 AAGTAGATTA
21838809 TAAATTATATTTAATAATAATTAT-T
1 TAAATTATATTTAATAATAATTATAT
* * *
21838834 TAAATTATATTTTATAGTATTATATAT
1 TAAATTATATTTAATAATAAT-TATAT
* * * * * *
21838861 TATGATTTTAGTAAATTATATATTTTAT
1 TA-AATTATATTTAATAATA-ATTATAT
*
21838889 TAAATTATATTTAATAATAATTATTT
1 TAAATTATATTTAATAATAATTATAT
21838915 TAAATTATATTT
1 TAAATTATATTT
21838927 TAGTATTATA
Statistics
Matches: 70, Mismatches: 19, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
25 18 0.26
26 20 0.29
27 15 0.21
28 16 0.23
29 1 0.01
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (26 bp):
TAAATTATATTTAATAATAATTATAT
Found at i:21838870 original size:23 final size:22
Alignment explanation
Indices: 21838837--21838889 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
21838827 AATTATTTAA
*
21838837 ATTATATTTTA-TAGTATTATAT
1 ATTATATTTTAGTA-AATTATAT
21838859 ATTATGATTTTAGTAAATTATAT
1 ATTAT-ATTTTAGTAAATTATAT
*
21838882 ATTTTATT
1 ATTATATT
21838890 AAATTATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 8 0.30
23 17 0.63
24 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (22 bp):
ATTATATTTTAGTAAATTATAT
Found at i:21838887 original size:17 final size:17
Alignment explanation
Indices: 21838834--21838898 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 17
21838824 AATAATTATT
21838834 TAAATTATAT-TTTATAG
1 TAAATTATATATTT-TAG
*
21838851 TATTATATATTATGATTTTAG
1 TA-AAT-TA-TAT-ATTTTAG
*
21838872 TAAATTATATATTTTAT
1 TAAATTATATATTTTAG
21838889 TAAATTATAT
1 TAAATTATAT
21838899 TTAATAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 18 0.45
18 5 0.12
19 4 0.10
20 5 0.12
21 5 0.12
22 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TAAATTATATATTTTAG
Found at i:21839003 original size:17 final size:17
Alignment explanation
Indices: 21838983--21839015 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
21838973 TTATTAACAA
21838983 TTTTATTAAATTATATG
1 TTTTATTAAATTATATG
21839000 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
21839016 TTTATAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATTATATG
Found at i:21839004 original size:117 final size:117
Alignment explanation
Indices: 21838865--21839269 Score: 711
Period size: 117 Copynumber: 3.5 Consensus size: 117
21838855 ATATATTATG
* * *
21838865 ATTTTAGTAAATTATATATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTAG
1 ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAACAATTATGTTAAATTATATTTTAG
21838930 TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
66 TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
* *
21838982 ATTTTATTAAATTATATGTTTTATTAAATTATATTTTATAACAATTATGTTAAATTATATTTTAG
1 ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAACAATTATGTTAAATTATATTTTAG
21839047 TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
66 TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
* *
21839099 ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTAG
1 ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAACAATTATGTTAAATTATATTTTAG
* *
21839164 TATCATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAAAA
66 TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
* *
21839216 ATTTTATTAAATTATATACTTTATTAAATTATATTTTATAACAATTATGTTAAA
1 ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAACAATTATGTTAAA
21839270 ATATGATTAA
Statistics
Matches: 273, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
117 273 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (117 bp):
ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAACAATTATGTTAAATTATATTTTAG
TATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAACA
Found at i:21839119 original size:17 final size:17
Alignment explanation
Indices: 21839099--21839132 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
21839089 TTTATTAACA
21839099 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
21839116 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
21839133 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:21839441 original size:39 final size:41
Alignment explanation
Indices: 21839397--21839501 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 41
21839387 TTCCTTAGGT
* *
21839397 TATTACACCTCTATTCCATTCAACCAAACACAAGAA-TACC
1 TATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACC
21839437 -ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTACC
1 TATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTACC
*
21839482 TATTACGCATCTATTCCATT
1 TATTACGCCTCTATTCCATT
21839502 ACGCCTCTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
39 13 0.24
40 1 0.02
41 4 0.07
44 19 0.35
45 5 0.09
46 13 0.24
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.30
Consensus pattern (41 bp):
TATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACC
Found at i:21839476 original size:44 final size:46
Alignment explanation
Indices: 21839413--21839503 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
21839403 ACCTCTATTC
* *
21839413 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTA
21839457 CATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTA
21839503 C
1 C
21839504 GCCTCTATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 19 0.44
45 4 0.09
46 20 0.47
ACGTcount: A:0.40, C:0.30, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTA
Found at i:21839504 original size:16 final size:16
Alignment explanation
Indices: 21839483--21839551 Score: 120
Period size: 16 Copynumber: 4.3 Consensus size: 16
21839473 AGAATTACCT
*
21839483 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
21839499 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
21839515 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
21839531 ATTACGCCTCTATTCT
1 ATTACGCCTCTATTCC
21839547 ATTAC
1 ATTAC
21839552 AGCGAACCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:21842817 original size:16 final size:16
Alignment explanation
Indices: 21842793--21842829 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
21842783 TTAAAAACCC
*
21842793 AAATGATTTGAACTCA
1 AAATTATTTGAACTCA
*
21842809 AAATTATTTGAATTCA
1 AAATTATTTGAACTCA
21842825 AAATT
1 AAATT
21842830 GATCCAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (16 bp):
AAATTATTTGAACTCA
Found at i:21848737 original size:30 final size:28
Alignment explanation
Indices: 21848702--21848766 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
21848692 ACTTTTTTAA
*
21848702 TATAAATAATAAAAAGAATTATTAAAAATT
1 TATAAATAAT-AAAAGAACTATTAAAAA-T
* *
21848732 TATAAAATAATATAATAACTATTAAAAAT
1 TAT-AAATAATAAAAGAACTATTAAAAAT
21848761 TATAAA
1 TATAAA
21848767 AAAATATAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 3 0.10
29 4 0.13
30 17 0.55
31 7 0.23
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (28 bp):
TATAAATAATAAAAGAACTATTAAAAAT
Found at i:21848788 original size:29 final size:30
Alignment explanation
Indices: 21848721--21848795 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
21848711 TAAAAAGAAT
* *
21848721 TATTAAAAATTTATAAAATAATATAATAAC
1 TATTAAAAAGTTATAAAAAAATATAATAAC
21848751 TATTAAAAA-TTATAAAAAAATATAGA-AA-
1 TATTAAAAAGTTATAAAAAAATATA-ATAAC
*
21848779 TATTTTAAAAGTTATAA
1 TA-TTAAAAAGTTATAA
21848796 GTTTCTTAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
28 2 0.05
29 22 0.55
30 16 0.40
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (30 bp):
TATTAAAAAGTTATAAAAAAATATAATAAC
Found at i:21849415 original size:18 final size:17
Alignment explanation
Indices: 21849377--21849415 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
21849367 AAATTAACCT
*
21849377 TTTTTATATTTTCAATT
1 TTTTTATATTTTCAATA
*
21849394 TTTTTATAATTTTTAATA
1 TTTTTAT-ATTTTCAATA
21849412 TTTT
1 TTTT
21849416 AAATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTATATTTTCAATA
Found at i:21852810 original size:12 final size:11
Alignment explanation
Indices: 21852764--21852807 Score: 88
Period size: 11 Copynumber: 4.0 Consensus size: 11
21852754 TAGTAGTTTC
21852764 TTCAAAAAAAA
1 TTCAAAAAAAA
21852775 TTCAAAAAAAA
1 TTCAAAAAAAA
21852786 TTCAAAAAAAA
1 TTCAAAAAAAA
21852797 TTCAAAAAAAA
1 TTCAAAAAAAA
21852808 ATTTGGTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:21852868 original size:15 final size:16
Alignment explanation
Indices: 21852848--21852887 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
21852838 GATATCAAGT
21852848 TGAAAAAAAAA-TTCG
1 TGAAAAAAAAATTTCG
21852863 TGAAAAAAAAATTTCG
1 TGAAAAAAAAATTTCG
21852879 TGAAAAAAA
1 TGAAAAAAA
21852888 GAAGAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.20
Consensus pattern (16 bp):
TGAAAAAAAAATTTCG
Found at i:21869197 original size:17 final size:17
Alignment explanation
Indices: 21869134--21869197 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
21869124 AAATATTTAT
**
21869134 TTTTTA-ATTTATGATA
1 TTTTTATATTTAAAATA
*
21869150 TGTTTATATTTAAAAT-
1 TTTTTATATTTAAAATA
*
21869166 TTTAATT-TATATAAAATA
1 TTT--TTATATTTAAAATA
21869184 TTTTTATATTTAAA
1 TTTTTATATTTAAA
21869198 TTCAAATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
16 9 0.24
17 23 0.62
18 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTTTATATTTAAAATA
Found at i:21872130 original size:16 final size:17
Alignment explanation
Indices: 21872111--21872154 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
21872101 AGCATCACTA
*
21872111 TAGAACAACTCT-TATT
1 TAGAACAACTCTACATT
21872127 TAGAACAACCTCTACATT
1 TAGAACAA-CTCTACATT
*
21872145 GAGAACAACT
1 TAGAACAACT
21872155 ATGCCAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.33
17 6 0.25
18 10 0.42
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (17 bp):
TAGAACAACTCTACATT
Found at i:21872739 original size:16 final size:16
Alignment explanation
Indices: 21872718--21872748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21872708 TTCACTATTA
*
21872718 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
21872734 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
21872749 GTATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:21874402 original size:42 final size:42
Alignment explanation
Indices: 21874344--21874424 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
21874334 TTCCAAAAAT
*
21874344 AATATTATTTTAATAGT-TTAATATTAAATTAA-ATTAAATTA
1 AATATTATCTTAATAGTATT-ATATTAAATTAATATTAAATTA
* *
21874385 AATACTTATCTTAATAGTATTTTATTAATTTAATATTAAA
1 AATA-TTATCTTAATAGTATTATATTAAATTAATATTAAA
21874425 GTGACTATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 4 0.12
42 22 0.65
43 8 0.24
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (42 bp):
AATATTATCTTAATAGTATTATATTAAATTAATATTAAATTA
Found at i:21877231 original size:18 final size:17
Alignment explanation
Indices: 21877204--21877237 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
21877194 AATAAATATT
21877204 ATTTATAAATTAATTTA
1 ATTTATAAATTAATTTA
21877221 ATTTGATAAATTAATTT
1 ATTT-ATAAATTAATTT
21877238 TCCAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTATAAATTAATTTA
Found at i:21877372 original size:14 final size:13
Alignment explanation
Indices: 21877355--21877404 Score: 57
Period size: 14 Copynumber: 3.7 Consensus size: 13
21877345 TAAAAATGAC
21877355 TAATTAATTTAATT
1 TAATT-ATTTAATT
21877369 TAATT-TTTGAATTT
1 TAATTATTT-AA-TT
21877383 TAATTATTTAATT
1 TAATTATTTAATT
*
21877396 TAATAATTT
1 TAATTATTT
21877405 GAAAAACTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
12 3 0.09
13 12 0.38
14 14 0.44
15 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TAATTATTTAATT
Found at i:21882503 original size:25 final size:24
Alignment explanation
Indices: 21882475--21882563 Score: 74
Period size: 25 Copynumber: 3.6 Consensus size: 24
21882465 ATAAATGGGT
*
21882475 AGCTCTTTCGAGCCATAG-AACAGGA
1 AGCTCTGT-GAGCCAT-GTAACAGGA
*
21882500 AGCTCATGTGAGCCATGTAACGGGA
1 AGCTC-TGTGAGCCATGTAACAGGA
* *
21882525 AGCTCTAGAGAGCCAT-TAACGGGA
1 AGCTCT-GTGAGCCATGTAACAGGA
*
21882549 AGCTCATATGAGCCA
1 AGCTC-TGTGAGCCA
21882564 ATATCGGGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
24 21 0.38
25 32 0.58
26 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.19
Consensus pattern (24 bp):
AGCTCTGTGAGCCATGTAACAGGA
Found at i:21882529 original size:50 final size:50
Alignment explanation
Indices: 21882444--21882563 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 50
21882434 AATTCATATT
* * ***
21882444 CAGGAATGCTCATGTGAG-CATATAAATGGGTAGCTCTTTCGAGCCATAGAA
1 CAGGAA-GCTCATGTGAGCCATATAAACGGGAAGCTCTAGAGAGCCAT-GAA
* *
21882495 CAGGAAGCTCATGTGAGCCATGT-AACGGGAAGCTCTAGAGAGCCATTAA
1 CAGGAAGCTCATGTGAGCCATATAAACGGGAAGCTCTAGAGAGCCATGAA
* *
21882544 CGGGAAGCTCATATGAGCCA
1 CAGGAAGCTCATGTGAGCCA
21882564 ATATCGGGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
49 20 0.34
50 29 0.49
51 10 0.17
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.21
Consensus pattern (50 bp):
CAGGAAGCTCATGTGAGCCATATAAACGGGAAGCTCTAGAGAGCCATGAA
Found at i:21882561 original size:24 final size:24
Alignment explanation
Indices: 21882497--21882574 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
21882487 CCATAGAACA
*
21882497 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATATGAGCCAT-TAACG
*
21882522 GGAAGCTC-TAGAGAGCCATTAACG
1 GGAAGCTCATA-TGAGCCATTAACG
* *
21882546 GGAAGCTCATATGAGCCAATATCG
1 GGAAGCTCATATGAGCCATTAACG
21882570 GGAAG
1 GGAAG
21882575 GTTCAAACGA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
24 29 0.63
25 17 0.37
ACGTcount: A:0.32, C:0.19, G:0.31, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATATGAGCCATTAACG
Found at i:21882592 original size:25 final size:25
Alignment explanation
Indices: 21882561--21882624 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
21882551 CTCATATGAG
*
21882561 CCAATATCGGGAAGGTTCAAACGAA
1 CCAATATCGGGAAGATTCAAACGAA
* * *
21882586 CCAATATCGAGAATATTCAAACGAG
1 CCAATATCGGGAAGATTCAAACGAA
*
21882611 CCAATATCAGGAAG
1 CCAATATCGGGAAG
21882625 CTCCGGAGAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (25 bp):
CCAATATCGGGAAGATTCAAACGAA
Found at i:21892004 original size:25 final size:25
Alignment explanation
Indices: 21891976--21892023 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
21891966 TAGCTCTTTC
21891976 GAGCCATATAACAAGAAGCTCATGT
1 GAGCCATATAACAAGAAGCTCATGT
* **
21892001 GAGCCATGTAACGGGAAGCTCAT
1 GAGCCATATAACAAGAAGCTCAT
21892024 ACGAGATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACAAGAAGCTCATGT
Found at i:21892059 original size:25 final size:25
Alignment explanation
Indices: 21892031--21892092 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
21892021 CATACGAGAT
21892031 AATATCGAGAAGGTTCAAGCGAACC
1 AATATCGAGAAGGTTCAAGCGAACC
* * * *
21892056 AATATCGGGAATGTTTAAGCGAGCC
1 AATATCGAGAAGGTTCAAGCGAACC
21892081 AATATCGAGAAG
1 AATATCGAGAAG
21892093 CTCCGAAGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (25 bp):
AATATCGAGAAGGTTCAAGCGAACC
Found at i:21892118 original size:26 final size:26
Alignment explanation
Indices: 21892076--21892154 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
21892066 ATGTTTAAGC
*
21892076 GAGCCAA-T-ATCGAGAAGCTCCGAA
1 GAGCCAATTAATCGGGAAGCTCCGAA
**
21892100 GAGCCAATTAATCGGGAAGCTTATGAAA
1 GAGCCAATTAATCGGGAAGC-TCCG-AA
*
21892128 GAGCC-TTTAATCGGGAAGCTCCGAA
1 GAGCCAATTAATCGGGAAGCTCCGAA
21892153 GA
1 GA
21892155 CCATATAACC
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 7 0.16
25 5 0.11
26 11 0.24
27 15 0.33
28 7 0.16
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
GAGCCAATTAATCGGGAAGCTCCGAA
Found at i:21895035 original size:40 final size:41
Alignment explanation
Indices: 21894964--21895040 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
21894954 TTTATTACTT
* *
21894964 ATTTTATTATTATAATATAATATATATACTTAAACATTAAG
1 ATTTTATTATTATAATATAATAAATACACTTAAACATTAAG
*
21895005 ATTTTA-TATTATAATAT-ATAGAATACACTTACACAT
1 ATTTTATTATTATAATATAATA-AATACACTTAAACAT
21895041 ATTTTAACCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.09
40 23 0.72
41 6 0.19
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (41 bp):
ATTTTATTATTATAATATAATAAATACACTTAAACATTAAG
Found at i:21906641 original size:25 final size:25
Alignment explanation
Indices: 21906613--21906664 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
21906603 AAAATTGGTA
21906613 AGACATTTTCCATTCT-TCTCTAAGC
1 AGACATTTTCCATTCTCT-TCTAAGC
21906638 AGACATTTTCCATTCTCTTCTAAGC
1 AGACATTTTCCATTCTCTTCTAAGC
21906663 AG
1 AG
21906665 CAGACATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (25 bp):
AGACATTTTCCATTCTCTTCTAAGC
Found at i:21911355 original size:32 final size:33
Alignment explanation
Indices: 21911314--21911398 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 33
21911304 AACTTTTCCG
* * *
21911314 GAAAATATTTT-CAGGAAATCTGCCAAACAGCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
21911346 GAAAATATTTTACA-CAGATTTACCAAACACCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
21911378 GAAAATATTTTCCAGTAAATC
1 GAAAATATTTTACAGCAAATC
21911399 ATTTTACAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
32 37 0.88
33 5 0.12
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (33 bp):
GAAAATATTTTACAGCAAATCTACCAAACACCA
Found at i:21911416 original size:20 final size:20
Alignment explanation
Indices: 21911391--21911430 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
21911381 AATATTTTCC
*
21911391 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
21911411 AGTAAAACATTTTTCAGAAA
1 AGTAAAACATTTTACAGAAA
21911431 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:21911432 original size:34 final size:35
Alignment explanation
Indices: 21911379--21911445 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
21911369 CAAACACCAG
*
21911379 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
21911414 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
21911446 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:21911437 original size:14 final size:14
Alignment explanation
Indices: 21911414--21911453 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
21911404 ACAGAAAAGT
*
21911414 AAAACATTTTTCAG
1 AAAACATTTTACAG
* *
21911428 AAATCATTTTACGG
1 AAAACATTTTACAG
21911442 AAAACATTTTAC
1 AAAACATTTTAC
21911454 TGCCAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:21912516 original size:14 final size:14
Alignment explanation
Indices: 21912497--21912526 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21912487 AGTGAGAGAG
*
21912497 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
21912511 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
21912525 GA
1 GA
21912527 ACGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:21914568 original size:13 final size:13
Alignment explanation
Indices: 21914550--21914599 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
21914540 TCTGAGTAGG
*
21914550 GTCACATGCCCGT
1 GTCACACGCCCGT
*
21914563 GTCACACGGCCGT
1 GTCACACGCCCGT
*
21914576 GTCACACGGCCGT
1 GTCACACGCCCGT
21914589 GTCACACGCCC
1 GTCACACGCCC
21914600 ATGTGTCAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.16, C:0.42, G:0.26, T:0.16
Consensus pattern (13 bp):
GTCACACGCCCGT
Found at i:21914607 original size:15 final size:13
Alignment explanation
Indices: 21914559--21914596 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
21914549 GGTCACATGC
21914559 CCGTGTCACACGG
1 CCGTGTCACACGG
21914572 CCGTGTCACACGG
1 CCGTGTCACACGG
21914585 CCGTGTCACACG
1 CCGTGTCACACG
21914597 CCCATGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.39, G:0.29, T:0.16
Consensus pattern (13 bp):
CCGTGTCACACGG
Found at i:21915591 original size:81 final size:82
Alignment explanation
Indices: 21915492--21915660 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 82
21915482 ACAAAAGTGT
* * *
21915492 ATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATATGCAATTTAGAGG-TATCGAAGTAC-AA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATATGCAATTCAG-GGTTATCGAAGTACAAA
* *
21915555 CAGGGGCACGTATGTTCA
65 CAGAGGCACGTATGTGCA
* * * *
21915573 ATTCAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGTAATTCAGGGTTATTGAAGTACAAAC
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATATGCAATTCAGGGTTATCGAAGTACAAAC
*
21915638 AGAGGTACGTATGTGCA
66 AGAGGCACGTATGTGCA
21915655 ATTCAA
1 ATTCAA
21915661 CAATAATATT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
80 2 0.03
81 51 0.67
82 23 0.30
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (82 bp):
ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATATGCAATTCAGGGTTATCGAAGTACAAAC
AGAGGCACGTATGTGCA
Found at i:21915607 original size:41 final size:41
Alignment explanation
Indices: 21915492--21915660 Score: 191
Period size: 41 Copynumber: 4.1 Consensus size: 41
21915482 ACAAAAGTGT
* * *
21915492 ATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATATGCA
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
* * *
21915533 ATT-TAGAGGTATCGAAGTAC-AACAGGGGCACGTATGTTCA
1 ATTCAAG-GGTACCGAAGTACAAACAGGGGCACGTATGTGCA
* *
21915573 ATTCAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGTA
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
** * *
21915614 ATTC-AGGGTTATTGAAGTACAAACAGAGGTACGTATGTGCA
1 ATTCAAGGG-TACCGAAGTACAAACAGGGGCACGTATGTGCA
21915655 ATTCAA
1 ATTCAA
21915661 CAATAATATT
Statistics
Matches: 106, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
40 36 0.34
41 69 0.65
42 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (41 bp):
ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
Found at i:21919032 original size:25 final size:23
Alignment explanation
Indices: 21919004--21919054 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
21918994 TAAAGTCTTT
*
21919004 AATAGATTAAACTAAAAGAAATTGA
1 AATACATTAAACTAAAAG--ATTGA
*
21919029 AATACATTAAACTAGAAGATTGA
1 AATACATTAAACTAAAAGATTGA
21919052 AAT
1 AAT
21919055 GCCATTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.33
25 16 0.67
ACGTcount: A:0.57, C:0.06, G:0.12, T:0.25
Consensus pattern (23 bp):
AATACATTAAACTAAAAGATTGA
Found at i:21924235 original size:100 final size:100
Alignment explanation
Indices: 21924062--21924257 Score: 268
Period size: 100 Copynumber: 2.0 Consensus size: 100
21924052 CGGCACGAAC
* * * * * * *
21924062 TTTTGGATGGGATCTAAGTAGTTATAGGTTGAGATGTTTGTATAGCGTTTGAAGAATTATTTTTT
1 TTTTGGATGGGATCCAAGTAGTTATAGGTGGAGATGCTTGCATAGCATTTGAAGAATTATATCTT
*
21924127 AGCTTCGAAATGTACATTGAATCACTTGATTGAAT
66 AGCTTCGAAATGTACATTGAATCACTCGATTGAAT
* *
21924162 TTTTGGATGTGATCCAAGTAGTTATGGGCTGGA-ATGCTTGCATAGCATTTGAAGAATTATATCT
1 TTTTGGATGGGATCCAAGTAGTTATAGG-TGGAGATGCTTGCATAGCATTTGAAGAATTATATCT
* *
21924226 TAGTTTCGAAATGTACTTTGAATCACTCGATT
65 TAGCTTCGAAATGTACATTGAATCACTCGATT
21924258 TTGAGTTTGG
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 80 0.96
101 3 0.04
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (100 bp):
TTTTGGATGGGATCCAAGTAGTTATAGGTGGAGATGCTTGCATAGCATTTGAAGAATTATATCTT
AGCTTCGAAATGTACATTGAATCACTCGATTGAAT
Found at i:21924614 original size:82 final size:82
Alignment explanation
Indices: 21924519--21924685 Score: 325
Period size: 82 Copynumber: 2.0 Consensus size: 82
21924509 CTATTCTTGT
21924519 TTAGATTAATTGAAGTTTCATTATATAAGAATTTTATTTTAATATAATTAGCTAACCTATAAAAA
1 TTAGATTAATTGAAGTTTCATTATATAAGAATTTTATTTTAATATAATTAGCTAACCTATAAAAA
21924584 TGTCTCTTCATTATTCA
66 TGTCTCTTCATTATTCA
*
21924601 TTAGATTAATTGAAGTTTCATTATATAAGAGTTTTATTTTAATATAATTAGCTAACCTATAAAAA
1 TTAGATTAATTGAAGTTTCATTATATAAGAATTTTATTTTAATATAATTAGCTAACCTATAAAAA
21924666 TGTCTCTTCATTATTCA
66 TGTCTCTTCATTATTCA
21924683 TTA
1 TTA
21924686 TAGAGAGAGA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.46
Consensus pattern (82 bp):
TTAGATTAATTGAAGTTTCATTATATAAGAATTTTATTTTAATATAATTAGCTAACCTATAAAAA
TGTCTCTTCATTATTCA
Found at i:21934525 original size:26 final size:26
Alignment explanation
Indices: 21934491--21934549 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
21934481 CTCGAGTAAG
*
21934491 AAGAAGCTCCTAGGCAATGAAAAGGT
1 AAGATGCTCCTAGGCAATGAAAAGGT
*
21934517 AAGATGCTCCTGGGCAATGAAAAGGT
1 AAGATGCTCCTAGGCAATGAAAAGGT
21934543 AAG-TGCT
1 AAGATGCT
21934550 GGAGAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.19
Consensus pattern (26 bp):
AAGATGCTCCTAGGCAATGAAAAGGT
Found at i:21938516 original size:26 final size:27
Alignment explanation
Indices: 21938478--21938532 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
21938468 CCCAACACTC
21938478 AAACAAACACCAATTACACAAA-ACCCA
1 AAACAAACACCAATT-CACAAATACCCA
*
21938505 AAACAAAC-CCAATTCCCAAATACCCA
1 AAACAAACACCAATTCACAAATACCCA
21938531 AA
1 AA
21938533 CAAGCCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 13 0.50
27 8 0.31
ACGTcount: A:0.56, C:0.35, G:0.00, T:0.09
Consensus pattern (27 bp):
AAACAAACACCAATTCACAAATACCCA
Found at i:21938533 original size:25 final size:26
Alignment explanation
Indices: 21938477--21938535 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
21938467 ACCCAACACT
21938477 CAAACAAACACCAATTACACAAAACC
1 CAAACAAACACCAATTACACAAAACC
*
21938503 CAAAACAAAC-CCAATT-CCCAAATACC
1 C-AAACAAACACCAATTACACAAA-ACC
21938529 CAAACAA
1 CAAACAA
21938536 GCCAAACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 11 0.37
26 11 0.37
27 8 0.27
ACGTcount: A:0.56, C:0.36, G:0.00, T:0.08
Consensus pattern (26 bp):
CAAACAAACACCAATTACACAAAACC
Found at i:21944450 original size:26 final size:26
Alignment explanation
Indices: 21944387--21944462 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
21944377 TATCATCGCT
***
21944387 ATTTTACCCCTAACAAAATTTTGATG
1 ATTTTACCCCTGGTAAAATTTTGATG
21944413 ATTTTACCCCTGGTAAAATTTTGATG
1 ATTTTACCCCTGGTAAAATTTTGATG
*
21944439 ATTTTGCCCCTGGTAAAATTTTGA
1 ATTTTACCCCTGGTAAAATTTTGA
21944463 GAAATATGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (26 bp):
ATTTTACCCCTGGTAAAATTTTGATG
Found at i:21944623 original size:6 final size:6
Alignment explanation
Indices: 21944607--21944641 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
21944597 GCAAATAAAT
* *
21944607 CATTTC TATTTC CATTTT CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
21944642 TTGGAAACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (6 bp):
CATTTC
Found at i:21944629 original size:18 final size:18
Alignment explanation
Indices: 21944606--21944642 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
21944596 TGCAAATAAA
*
21944606 TCATTTCTATTTCCATTT
1 TCATTTCCATTTCCATTT
21944624 TCATTTCCATTTCCATTT
1 TCATTTCCATTTCCATTT
21944642 T
1 T
21944643 TGGAAACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.59
Consensus pattern (18 bp):
TCATTTCCATTTCCATTT
Found at i:21958265 original size:32 final size:32
Alignment explanation
Indices: 21958210--21958348 Score: 154
Period size: 32 Copynumber: 4.4 Consensus size: 32
21958200 GAATGGCTAC
* * *
21958210 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGTACA
* * * *
21958241 AAGCCATCAGTAGCAGTGATATGATCGATATA
1 AAGCCATCAGTAACAGTAATATGATCGGTACA
* * *
21958273 CAGCCATTAGTAACGGTAATATGATCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGTACA
* * *
21958305 AAGCCATCAGTAACGGTAATATGACCGGAACA
1 AAGCCATCAGTAACAGTAATATGATCGGTACA
21958337 AAGCCATCAGTA
1 AAGCCATCAGTA
21958349 TCATCACAGC
Statistics
Matches: 89, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
31 10 0.11
32 79 0.89
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGTACA
Found at i:21958578 original size:24 final size:24
Alignment explanation
Indices: 21958494--21958575 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
21958484 CCATGCTCAG
21958494 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
* **
21958518 AATCAGTCATACCAATCACAGGCA
1 AATCAGTCATACAAATCACAAACA
** *
21958542 AATCCA-TCATTTAAATCACAATCA
1 AAT-CAGTCATACAAATCACAAACA
21958566 AATCAGTCAT
1 AATCAGTCAT
21958576 TTACATCACG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.04
24 44 0.92
25 2 0.04
ACGTcount: A:0.46, C:0.26, G:0.06, T:0.22
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:21958583 original size:24 final size:24
Alignment explanation
Indices: 21958494--21958602 Score: 87
Period size: 24 Copynumber: 4.5 Consensus size: 24
21958484 CCATGCTCAG
**
21958494 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATTTAAATCACAAACA
*** **
21958518 AATCAGTCATACCAATCACAGGCA
1 AATCAGTCATTTAAATCACAAACA
*
21958542 AATCCA-TCATTTAAATCACAATCA
1 AAT-CAGTCATTTAAATCACAAACA
* *
21958566 AATCAGTCATTTACATCACGGAA-A
1 AATCAGTCATTTAAATCAC-AAACA
*
21958590 AATCAATCATTTA
1 AATCAGTCATTTA
21958603 CACTCGAATG
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
23 2 0.03
24 65 0.93
25 3 0.04
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (24 bp):
AATCAGTCATTTAAATCACAAACA
Found at i:21958584 original size:48 final size:48
Alignment explanation
Indices: 21958506--21958602 Score: 119
Period size: 48 Copynumber: 2.0 Consensus size: 48
21958496 TCAGTCATAC
* *
21958506 AAATCACAAACAAATCAGTCATACCAATCACAGG-CAAATCCATCATTT
1 AAATCACAAACAAATCAGTCATACCAATCAC-GGAAAAATCAATCATTT
*
21958554 AAATCACAATCAAATCAGTCATTTA-C-ATCACGGAAAAATCAATCATTT
1 AAATCACAAACAAATCAGTCA--TACCAATCACGGAAAAATCAATCATTT
21958602 A
1 A
21958603 CACTCGAATG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
47 2 0.05
48 38 0.88
49 1 0.02
50 2 0.05
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (48 bp):
AAATCACAAACAAATCAGTCATACCAATCACGGAAAAATCAATCATTT
Found at i:21958680 original size:27 final size:26
Alignment explanation
Indices: 21958641--21958898 Score: 137
Period size: 27 Copynumber: 9.7 Consensus size: 26
21958631 CTTCAGGGGA
*
21958641 ATTACGATCATTTTACCTTACAAGGGT
1 ATTACGGTCATTTTACC-TACAAGGGT
* * * * **
21958668 GTTTCGGTTATTTAACCCTATGAGGGT
1 ATTACGGTCATTTTA-CCTACAAGGGT
*
21958695 ATTACGGTCATTTTATCCTACAAGGGC
1 ATTACGGTCATTTTA-CCTACAAGGGT
21958722 ATTACGGTCATTTTACCTTATC--GGGT
1 ATTACGGTCATTTTACC-TA-CAAGGGT
* *
21958748 -TTTCGGTCATTTTATCCTACAGGGGT
1 ATTACGGTCATTTTA-CCTACAAGGGT
21958774 ATTACGGTCATTTTACCCTACGAA-GGT
1 ATTACGGTCATTTTA-CCTAC-AAGGGT
*** * * *
21958801 ATTTTTGTTATTTTACCCATCGAGGGT
1 ATTACGGTCATTTTACCTA-CAAGGGT
*** * * *
21958828 ATTTTAGTCATTTTACCCATCGATGGT
1 ATTACGGTCATTTTACCTA-CAAGGGT
* * *
21958855 ATTTCGGTAATTTTACCCATCAAGGGT
1 ATTACGGTCATTTTACCTA-CAAGGGT
* **
21958882 ATTTCAATCATTTTACC
1 ATTACGGTCATTTTACC
21958899 CATTGAGGGT
Statistics
Matches: 184, Mismatches: 37, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
24 1 0.01
25 15 0.08
26 15 0.08
27 149 0.81
28 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (26 bp):
ATTACGGTCATTTTACCTACAAGGGT
Found at i:21958781 original size:79 final size:81
Alignment explanation
Indices: 21958641--21958799 Score: 209
Period size: 79 Copynumber: 2.0 Consensus size: 81
21958631 CTTCAGGGGA
* *
21958641 ATTACGATCATTTTACCTTACAAGGGTGTTTCGGTTATTTAACCCTATGAGGGTATTACGGTCAT
1 ATTACGATCATTTTACCTTAC-AGGGTGTTTCGGTCATTTAACCCTAAGAGGGTATTACGGTCAT
*
21958706 TTTATCCTAC-AAGGGC
65 TTTACCCTACGAAGGGC
* * *
21958722 ATTACGGTCATTTTACCTTATC-GGGT-TTTCGGTCATTTTATCCTACAG-GGGTATTACGGTCA
1 ATTACGATCATTTTACCTTA-CAGGGTGTTTCGGTCATTTAACCCTA-AGAGGGTATTACGGTCA
21958784 TTTTACCCTACGAAGG
64 TTTTACCCTACGAAGG
21958800 TATTTTTGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
79 40 0.58
80 9 0.13
81 19 0.28
82 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (81 bp):
ATTACGATCATTTTACCTTACAGGGTGTTTCGGTCATTTAACCCTAAGAGGGTATTACGGTCATT
TTACCCTACGAAGGGC
Found at i:21958838 original size:54 final size:54
Alignment explanation
Indices: 21958780--21959056 Score: 330
Period size: 54 Copynumber: 5.1 Consensus size: 54
21958770 GGGTATTACG
* ** *
21958780 GTCATTTTACCC-TACGAAGGTATTTTTGTTATTTTACCCATCGAGGGTATTTTA
1 GTCATTTTACCCAT-CGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
* * *
21958834 GTCATTTTACCCATCGATGGTATTTCGGTAATTTTACCCATCAAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
* * *** *
21958888 ATCATTTTACCCATTGAGGGTATTTAAATAATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
* *
21958942 GTCATTTTACCCATC-AGGGGTATTTCGATAATTTTACCCATCGAGGGTA-TTTC
1 GTCATTTTACCCATCGA-GGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
*
21958995 GATCGTTTTACCCATCG-GGAGTATTTCGGTAATTTTACCCATCGAGGGTA-TTTA
1 G-TCATTTTACCCATCGAGG-GTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
21959049 GGTCATTT
1 -GTCATTT
21959057 AACAAATATT
Statistics
Matches: 194, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
53 6 0.03
54 186 0.96
55 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTA
Found at i:21958899 original size:27 final size:27
Alignment explanation
Indices: 21958810--21959047 Score: 282
Period size: 27 Copynumber: 8.8 Consensus size: 27
21958800 TATTTTTGTT
* * *
21958810 ATTTTACCCATCGAGGGTATTTTAGTC
1 ATTTTACCCATCGAGGGTATTTCAATA
* **
21958837 ATTTTACCCATCGATGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCAATA
* *
21958864 ATTTTACCCATCAAGGGTATTTCAATC
1 ATTTTACCCATCGAGGGTATTTCAATA
* *
21958891 ATTTTACCCATTGAGGGTATTTAAATA
1 ATTTTACCCATCGAGGGTATTTCAATA
* *
21958918 ATTTTACCCATCGAGGGTATTTCAGTC
1 ATTTTACCCATCGAGGGTATTTCAATA
*
21958945 ATTTTACCCATC-AGGGGTATTTCGATA
1 ATTTTACCCATCGA-GGGTATTTCAATA
* *
21958972 ATTTTACCCATCGAGGGTATTTCGATC
1 ATTTTACCCATCGAGGGTATTTCAATA
* **
21958999 GTTTTACCCATCG-GGAGTATTTCGGTA
1 ATTTTACCCATCGAGG-GTATTTCAATA
21959026 ATTTTACCCATCGAGGGTATTT
1 ATTTTACCCATCGAGGGTATTT
21959048 AGGTCATTTA
Statistics
Matches: 182, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 176 0.97
28 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCAATA
Found at i:21959056 original size:27 final size:27
Alignment explanation
Indices: 21958770--21959056 Score: 273
Period size: 27 Copynumber: 10.6 Consensus size: 27
21958760 TATCCTACAG
21958770 GGGTA-TTACGGTCATTTTACCC-TACGA
1 GGGTATTTA-GGTCATTTTACCCAT-CGA
* ** *
21958797 AGGTATTTTTGTTATTTTACCCATCGA
1 GGGTATTTAGGTCATTTTACCCATCGA
21958824 GGGTATTTTA-GTCATTTTACCCATCGA
1 GGGTA-TTTAGGTCATTTTACCCATCGA
* * * *
21958851 TGGTATTTCGGTAATTTTACCCATCAA
1 GGGTATTTAGGTCATTTTACCCATCGA
* *
21958878 GGGTATTTCA-ATCATTTTACCCATTGA
1 GGGTATTT-AGGTCATTTTACCCATCGA
** *
21958905 GGGTATTTAAATAATTTTACCCATCGA
1 GGGTATTTAGGTCATTTTACCCATCGA
21958932 GGGTATTTCA-GTCATTTTACCCATC-A
1 GGGTATTT-AGGTCATTTTACCCATCGA
* * *
21958958 GGGGTATTTCGATAATTTTACCCATCGA
1 -GGGTATTTAGGTCATTTTACCCATCGA
* * *
21958986 GGGTATTTCGATCGTTTTACCCATCG-
1 GGGTATTTAGGTCATTTTACCCATCGA
* *
21959012 GGAGTATTTCGGTAATTTTACCCATCGA
1 GG-GTATTTAGGTCATTTTACCCATCGA
21959040 GGGTATTTAGGTCATTT
1 GGGTATTTAGGTCATTT
21959057 AACAAATATT
Statistics
Matches: 217, Mismatches: 31, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.03
27 200 0.92
28 10 0.05
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTAGGTCATTTTACCCATCGA
Found at i:21961768 original size:4 final size:4
Alignment explanation
Indices: 21961759--21961789 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
21961749 CAATAAGGAC
*
21961759 AAAT AAAT AAAT AAAT AAGT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
21961790 ATGGGAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:21961931 original size:14 final size:15
Alignment explanation
Indices: 21961914--21961945 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
21961904 AAAAATATTA
21961914 AAATAAAATAA-AAT
1 AAATAAAATAATAAT
21961928 AAATAAAATAATAAT
1 AAATAAAATAATAAT
21961943 AAA
1 AAA
21961946 AACTAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAATAAAATAATAAT
Found at i:21961933 original size:4 final size:5
Alignment explanation
Indices: 21961912--21961946 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
21961902 GTAAAAATAT
21961912 TAAAA TAAAA TAAAA T-AAA TAAAA TAATAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAA-AA TAAAA
21961947 ACTAAATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:21962147 original size:6 final size:7
Alignment explanation
Indices: 21962126--21962150 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21962116 TTACGCGATC
21962126 AAATAAA
1 AAATAAA
21962133 AAATAAA
1 AAATAAA
21962140 AAATAAA
1 AAATAAA
21962147 AAAT
1 AAAT
21962151 TGAAAATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAATAAA
Found at i:21971650 original size:28 final size:28
Alignment explanation
Indices: 21971619--21971708 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 28
21971609 TCCCTCCGTT
21971619 TCTTTTCTTTTCTTTTTCTCTCTGTCAC
1 TCTTTTCTTTTCTTTTTCTCTCTGTCAC
* * * * *
21971647 TC-TTTCGATTGCCTTTTCAAC-CAGTCGAC
1 TCTTTTC-TTTTCTTTTTC-TCTCTGTC-AC
*
21971676 -CTTTTTCTTTTCTTGTTCTCTCTGTCAC
1 TC-TTTTCTTTTCTTTTTCTCTCTGTCAC
21971704 TCTTT
1 TCTTT
21971709 CGATTGCTCT
Statistics
Matches: 44, Mismatches: 11, Indels: 14
0.64 0.16 0.20
Matches are distributed among these distances:
27 4 0.09
28 21 0.48
29 15 0.34
30 4 0.09
ACGTcount: A:0.08, C:0.29, G:0.08, T:0.56
Consensus pattern (28 bp):
TCTTTTCTTTTCTTTTTCTCTCTGTCAC
Found at i:21972062 original size:17 final size:17
Alignment explanation
Indices: 21972040--21972077 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
21972030 CGGTTGCATG
21972040 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
21972057 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
21972074 TTTC
1 TTTC
21972078 CTTTGAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.13, G:0.11, T:0.66
Consensus pattern (17 bp):
TTTCTATTGCTGTTTAT
Found at i:21972838 original size:22 final size:22
Alignment explanation
Indices: 21972797--21972872 Score: 70
Period size: 23 Copynumber: 3.5 Consensus size: 22
21972787 GAAGATGAAA
21972797 CTGGAAATTG--TTGCATTTGTT
1 CTGGAAATTGTTTTG-ATTTGTT
* *
21972818 -TTGATATTGTTCTTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
21972840 CTGGAAATTGTTTTGA-TTGTCT
1 CTGGAAATTGTTTTGATTTGT-T
21972862 GCTGGAAATTG
1 -CTGGAAATTG
21972873 AATTTGTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
20 7 0.16
21 4 0.09
22 12 0.27
23 22 0.49
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.50
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:21974102 original size:25 final size:25
Alignment explanation
Indices: 21974068--21974195 Score: 160
Period size: 25 Copynumber: 5.3 Consensus size: 25
21974058 TACATCAATA
21974068 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
21974093 ATTAAAATAAGGAC--TAATCA-ATA
1 ATTAAAATAAGGACTTTAAT-ATTTT
21974116 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
21974141 ATTAAAATAAGGAC--TAATCA-ATA
1 ATTAAAATAAGGACTTTAAT-ATTTT
21974164 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
21974189 ATTAAAA
1 ATTAAAA
21974196 ATCAATAAAT
Statistics
Matches: 87, Mismatches: 8, Indels: 16
0.78 0.07 0.14
Matches are distributed among these distances:
23 38 0.44
24 4 0.05
25 45 0.52
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (25 bp):
ATTAAAATAAGGACTTTAATATTTT
Found at i:21974117 original size:48 final size:48
Alignment explanation
Indices: 21974061--21974195 Score: 270
Period size: 48 Copynumber: 2.8 Consensus size: 48
21974051 AAAAAATTAC
21974061 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
21974109 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
21974157 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAA
21974196 ATCAATAAAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
Found at i:21974119 original size:23 final size:23
Alignment explanation
Indices: 21974061--21974178 Score: 132
Period size: 23 Copynumber: 5.0 Consensus size: 23
21974051 AAAAAATTAC
21974061 ATCAATAATTAAAATAAGGACTTTA
1 ATCAATAATTAAAATAAGGAC--TA
* *
21974086 AT-ATTTTATTAAAATAAGGACTA
1 ATCA-ATAATTAAAATAAGGACTA
21974109 ATCAATAATTAAAATAAGGACTTTA
1 ATCAATAATTAAAATAAGGAC--TA
* *
21974134 AT-ATTTTATTAAAATAAGGACTA
1 ATCA-ATAATTAAAATAAGGACTA
21974157 ATCAATAATTAAAATAAGGACT
1 ATCAATAATTAAAATAAGGACT
21974179 TTAATATTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
23 39 0.49
24 4 0.05
25 36 0.46
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (23 bp):
ATCAATAATTAAAATAAGGACTA
Found at i:21977857 original size:47 final size:45
Alignment explanation
Indices: 21977806--21977974 Score: 141
Period size: 47 Copynumber: 3.6 Consensus size: 45
21977796 TATTTAATAT
21977806 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAAATTATTAT-AA
* * * *
21977853 TAATT-TTATGAAA-TTATATATT-ATTATAA-AAATTATATATAATAA
1 TAATTATT-TTAAATTTATAAATTCA-TATAAGAAA-AAT-TATTATAA
* * * *
21977898 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAAATTATTA-TAA
21977945 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
21977975 TTTTAATTAA
Statistics
Matches: 97, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
44 4 0.04
45 25 0.26
46 15 0.15
47 45 0.46
48 8 0.08
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAAATTATTATAA
Found at i:21977879 original size:91 final size:92
Alignment explanation
Indices: 21977732--21977940 Score: 294
Period size: 92 Copynumber: 2.3 Consensus size: 92
21977722 TTGATTTTAG
* * * *
21977732 TAAATTCATATAAGAACATTTTATTATTACGAATTTTATGAAATTATATATCATTAT-TAAATTA
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAAATTA
* * *
21977796 TATTTAATATTAATTATTTTAAATTGTA
65 TATATAATAATAATTATTTTAAATTATA
* * *
21977824 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATAAAAATTAT
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAAATTAT
21977889 ATATAATAATAATTATTTTAAATTATA
66 ATATAATAATAATTATTTTAAATTATA
* *
21977916 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
21977941 GTTATAATTA
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
91 34 0.33
92 69 0.67
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAAATTAT
ATATAATAATAATTATTTTAAATTATA
Found at i:21977900 original size:19 final size:19
Alignment explanation
Indices: 21977863--21977900 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21977853 TAATTTTATG
* *
21977863 AAATTATATATTATTATAA
1 AAATTATATATAATAATAA
21977882 AAATTATATATAATAATAA
1 AAATTATATATAATAATAA
21977901 TTATTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAATTATATATAATAATAA
Found at i:21977902 original size:16 final size:18
Alignment explanation
Indices: 21977863--21977904 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
21977853 TAATTTTATG
21977863 AAATTATATATTATTATAA
1 AAATTATATATTA-TATAA
21977882 AAATTATATA-TA-ATAA
1 AAATTATATATTATATAA
*
21977898 TAATTAT
1 AAATTAT
21977905 TTTAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATTATATATTATATAA
Found at i:21978122 original size:25 final size:26
Alignment explanation
Indices: 21978090--21978144 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
21978080 TTATTAAATT
*
21978090 ATATATTTTAATTA-TAATATATTTA
1 ATATATTTTAATCATTAATATATTTA
*
21978115 ATATA-TTTAATCATTATTATATTTA
1 ATATATTTTAATCATTAATATATTTA
21978140 A-ATAT
1 ATATAT
21978145 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
ATATATTTTAATCATTAATATATTTA
Found at i:21978333 original size:44 final size:44
Alignment explanation
Indices: 21978285--21978372 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
21978275 CTTCTATTTC
*
21978285 ATTCAACCAAACACAAGATTAT-TATTACACCTCTATTCCATTAG
1 ATTCAACAAAACACAAGATT-TCTATTACACCTCTATTCCATTAG
*** *
21978329 ATTCAACAAAACAGTTGATTTGCTATTACACCTCTATTCTATTA
1 ATTCAACAAAACACAAGATTT-CTATTACACCTCTATTCCATTA
21978373 CACCTCTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.03
44 16 0.43
45 20 0.54
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (44 bp):
ATTCAACAAAACACAAGATTTCTATTACACCTCTATTCCATTAG
Found at i:21978363 original size:45 final size:45
Alignment explanation
Indices: 21978307--21978454 Score: 125
Period size: 45 Copynumber: 3.5 Consensus size: 45
21978297 ACAAGATTAT
21978307 TATTACACCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGC
1 TATTACACCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGC
* * ** * * * *
21978352 TATTACACCTCTATTCTATTACA--CCTCTAATCTAATAGA---GC
1 TATTACACCTCTATTCCATTAGATTCAACAAAAC-AGTTGATTTGC
* * *
21978393 ---GA-GCCTCTATTCCATTAGATTCAACCAAACAGTTGATTTGC
1 TATTACACCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGC
21978434 TATTACACCTCTATTCCATTA
1 TATTACACCTCTATTCCATTA
21978455 CACCTCTAAT
Statistics
Matches: 73, Mismatches: 20, Indels: 20
0.65 0.18 0.18
Matches are distributed among these distances:
37 14 0.19
38 5 0.07
39 5 0.07
41 4 0.05
43 5 0.07
44 5 0.07
45 35 0.48
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (45 bp):
TATTACACCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGC
Found at i:21978372 original size:16 final size:16
Alignment explanation
Indices: 21978351--21978385 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21978341 AGTTGATTTG
*
21978351 CTATTACACCTCTATT
1 CTATTACACCTCTAAT
21978367 CTATTACACCTCTAAT
1 CTATTACACCTCTAAT
21978383 CTA
1 CTA
21978386 ATAGAGCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (16 bp):
CTATTACACCTCTAAT
Found at i:21978410 original size:82 final size:82
Alignment explanation
Indices: 21978314--21978476 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
21978304 TATTATTACA
*
21978314 CCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGCTATTACACCTCTATTCTATTACACCTC
1 CCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGCTATTACACCTCTATTCCATTACACCTC
21978379 TAATCTAATAGAGCGAG
66 TAATCTAATAGAGCGAG
*
21978396 CCTCTATTCCATTAGATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTACACCTC
1 CCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGCTATTACACCTCTATTCCATTACACCTC
21978461 TAATCTAATAGAGCGA
66 TAATCTAATAGAGCGA
21978477 ACCAAACGTG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (82 bp):
CCTCTATTCCATTAGATTCAACAAAACAGTTGATTTGCTATTACACCTCTATTCCATTACACCTC
TAATCTAATAGAGCGAG
Found at i:21982906 original size:94 final size:94
Alignment explanation
Indices: 21982745--21982932 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
21982735 AAAATCGAAA
21982745 CAGTGGTTTAGGGATCACAAATCCGAGTCCGAAAAGAAAATTATTTTAATTTTATTTCATGGTCT
1 CAGTGGTTTAGGGATCACAAATCCGAGTCCGAAAAGAAAATTATTTTAATTTTATTTCATGGTCT
*
21982810 GCATTGTGATAGAAATATCGTATGAAAAT
66 GCATTATGATAGAAATATCGTATGAAAAT
21982839 CAGTGGTTTAGGGATCACAAATCCGAGTCCGAAAAGAAAATTATTTTAATTTTATTTCATGGTCT
1 CAGTGGTTTAGGGATCACAAATCCGAGTCCGAAAAGAAAATTATTTTAATTTTATTTCATGGTCT
21982904 GCATTATGATAGAAATATCGTATGAAAAT
66 GCATTATGATAGAAATATCGTATGAAAAT
21982933 TTCGTTAGGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.34
Consensus pattern (94 bp):
CAGTGGTTTAGGGATCACAAATCCGAGTCCGAAAAGAAAATTATTTTAATTTTATTTCATGGTCT
GCATTATGATAGAAATATCGTATGAAAAT
Found at i:21983575 original size:15 final size:15
Alignment explanation
Indices: 21983555--21983586 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21983545 TATGAATTAC
*
21983555 ATGTTATATGTAAAA
1 ATGTTATAAGTAAAA
21983570 ATGTTATAAGTAAAA
1 ATGTTATAAGTAAAA
21983585 AT
1 AT
21983587 TGACTAGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (15 bp):
ATGTTATAAGTAAAA
Found at i:21984231 original size:26 final size:26
Alignment explanation
Indices: 21984202--21984272 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
21984192 TATATATGGT
*
21984202 TCTTCGTGAGCTTCCCGATTAAAGGC
1 TCTTCGTGAGCTTCTCGATTAAAGGC
* *
21984228 TCTTTGTGAGCTTCTCG-TTAATGGC
1 TCTTCGTGAGCTTCTCGATTAAAGGC
21984253 TC-TC-TGGAGCTTCTCGATTA
1 TCTTCGT-GAGCTTCTCGATTA
21984273 TGGCTCGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 1 0.03
24 11 0.28
25 12 0.31
26 15 0.38
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (26 bp):
TCTTCGTGAGCTTCTCGATTAAAGGC
Found at i:21984267 original size:24 final size:24
Alignment explanation
Indices: 21984209--21984326 Score: 103
Period size: 24 Copynumber: 4.8 Consensus size: 24
21984199 GGTTCTTCGT
* *
21984209 GAGCTTCCCGATTAAAGGCTCTTTG
1 GAGCTTCCCG-TTAATGGCTCTCTG
*
21984234 TGAGCTTCTCGTTAATGGCTCTCTG
1 -GAGCTTCCCGTTAATGGCTCTCTG
* * *
21984259 GAGCTTCTCGATT-ATGGCTCGCTT
1 GAGCTTCCCG-TTAATGGCTCTCTG
* * *
21984283 GAACTTCCCGATATATGGCTATCTG
1 GAGCTTCCCGTTA-ATGGCTCTCTG
*
21984308 GAGCTTCCTGTTAATGGCT
1 GAGCTTCCCGTTAATGGCT
21984327 TTTCAAAGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
23 1 0.01
24 33 0.44
25 32 0.43
26 9 0.12
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCTCTG
Found at i:21984314 original size:25 final size:24
Alignment explanation
Indices: 21984209--21984315 Score: 99
Period size: 25 Copynumber: 4.3 Consensus size: 24
21984199 GGTTCTTCGT
* *
21984209 GAGCTTCCCGATTAAAGGCTCTTTG
1 GAGCTTCCCGATT-ATGGCTCTCTG
*
21984234 TGAGCTTCTCG-TTAATGGCTCTCTG
1 -GAGCTTCCCGATT-ATGGCTCTCTG
* * *
21984259 GAGCTTCTCGATTATGGCTCGCTT
1 GAGCTTCCCGATTATGGCTCTCTG
* *
21984283 GAACTTCCCGATATATGGCTATCTG
1 GAGCTTCCCGAT-TATGGCTCTCTG
21984308 GAGCTTCC
1 GAGCTTCC
21984316 TGTTAATGGC
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
24 29 0.43
25 30 0.44
26 9 0.13
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCGATTATGGCTCTCTG
Found at i:21984375 original size:24 final size:23
Alignment explanation
Indices: 21984348--21984444 Score: 70
Period size: 25 Copynumber: 4.0 Consensus size: 23
21984338 CTCGTTATTG
21984348 GCTCGCATGAGCTTCCCGATTATA
1 GCTCGCATGAGCTTCCCG-TTATA
**
21984372 GCTCTTATGAGCTTCCCGTTATACA
1 GCTCGCATGAGCTTCCCGTTAT--A
* * * *
21984397 GC-CTGGATAAGCTTCCCATTACATG
1 GCTC-GCATGAGCTTCCCGTT--ATA
*
21984422 GCTCACATGAGCTTCCCGTTATA
1 GCTCGCATGAGCTTCCCGTTATA
21984445 TGGCTCGAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 13
0.69 0.15 0.16
Matches are distributed among these distances:
23 6 0.11
24 17 0.31
25 29 0.53
26 1 0.02
27 2 0.04
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.31
Consensus pattern (23 bp):
GCTCGCATGAGCTTCCCGTTATA
Found at i:21989067 original size:51 final size:51
Alignment explanation
Indices: 21988991--21989092 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
21988981 TTTGAAACAT
21988991 CAACTCATTGAACTCCCGAACATGCTCTTGAAAATGCCTTATTGTATAAGC
1 CAACTCATTGAACTCCCGAACATGCTCTTGAAAATGCCTTATTGTATAAGC
21989042 CAACTCATTGAACTCCCGAACATGCTCTTGAAAATGCCTTATTGTATAAGC
1 CAACTCATTGAACTCCCGAACATGCTCTTGAAAATGCCTTATTGTATAAGC
21989093 GGATGCAACT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (51 bp):
CAACTCATTGAACTCCCGAACATGCTCTTGAAAATGCCTTATTGTATAAGC
Found at i:21989401 original size:33 final size:33
Alignment explanation
Indices: 21989363--21989432 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
21989353 AACATCCATT
21989363 TTGCGTTGCTTCGATCACAAAGCCAACATCTCA
1 TTGCGTTGCTTCGATCACAAAGCCAACATCTCA
21989396 TTGCGTTGCTTCGATCACAAAGCCAACATCTCA
1 TTGCGTTGCTTCGATCACAAAGCCAACATCTCA
21989429 TTGC
1 TTGC
21989433 TCAAAGTAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (33 bp):
TTGCGTTGCTTCGATCACAAAGCCAACATCTCA
Found at i:21996358 original size:13 final size:13
Alignment explanation
Indices: 21996340--21996368 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
21996330 ACAGACTGTC
21996340 ATATCTTTCATAT
1 ATATCTTTCATAT
21996353 ATATCTTTCATAT
1 ATATCTTTCATAT
21996366 ATA
1 ATA
21996369 AAAAGATAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATCTTTCATAT
Found at i:22001355 original size:50 final size:51
Alignment explanation
Indices: 22001231--22001477 Score: 191
Period size: 50 Copynumber: 4.8 Consensus size: 51
22001221 GATAATAACA
* ** *
22001231 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTC-T-T-GTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG-AC
* * **
22001280 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGA-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGAC
* ** * *
22001330 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTC-AG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGAC
** * * * *
22001380 TGCCAACACCATGTCCAAGACATGGTCTAACATGAGACCGCTCATAACCTCAATGA-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GAC
* * *
22001436 TGCGAATGCCATGTCACAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22001478 TTACCCAAAT
Statistics
Matches: 154, Mismatches: 33, Indels: 15
0.76 0.16 0.07
Matches are distributed among these distances:
49 38 0.25
50 77 0.50
51 2 0.01
52 1 0.01
53 2 0.01
56 33 0.21
57 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGAC
Found at i:22003133 original size:19 final size:19
Alignment explanation
Indices: 22003109--22003146 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22003099 TTCCACAGGG
22003109 ATACTTTCAAAAACACTTT
1 ATACTTTCAAAAACACTTT
22003128 ATACTTTCAAAAACACTTT
1 ATACTTTCAAAAACACTTT
22003147 GTCACCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
ATACTTTCAAAAACACTTT
Found at i:22008882 original size:56 final size:51
Alignment explanation
Indices: 22008764--22008907 Score: 175
Period size: 50 Copynumber: 2.7 Consensus size: 51
22008754 TGATAATAAC
* *
22008764 ATGCCAAAGCCATGTCCCAGACATGGTCTTAC-GGGAGACCTCTCATCTTAG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTAAG
*
22008815 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CT-AA-G
* *
22008870 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA
22008908 TCTTTTTACC
Statistics
Matches: 81, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
50 40 0.49
51 2 0.02
53 2 0.02
54 1 0.01
55 1 0.01
56 35 0.43
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (51 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAAG
Found at i:22025719 original size:8 final size:8
Alignment explanation
Indices: 22025706--22025731 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
22025696 ATTTATCAGC
22025706 TTTTATTA
1 TTTTATTA
22025714 TTTTATTA
1 TTTTATTA
22025722 TTTTATTA
1 TTTTATTA
22025730 TT
1 TT
22025732 CCAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:22025956 original size:20 final size:20
Alignment explanation
Indices: 22025931--22025983 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
22025921 ATTCAACAAC
22025931 TTCTCTTTTGAGTTAATAAA
1 TTCTCTTTTGAGTTAATAAA
*
22025951 TTCTCTTTTGAGTTAATAAG
1 TTCTCTTTTGAGTTAATAAA
*
22025971 TTC-CCTTTGAGTT
1 TTCTCTTTTGAGTT
22025984 TTATTTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 9 0.29
20 22 0.71
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.51
Consensus pattern (20 bp):
TTCTCTTTTGAGTTAATAAA
Found at i:22030153 original size:15 final size:15
Alignment explanation
Indices: 22030133--22030168 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
22030123 CCTCATCATG
22030133 ACGTCGGTGTCCTCC
1 ACGTCGGTGTCCTCC
22030148 ACGTCGGTGTCCTCC
1 ACGTCGGTGTCCTCC
22030163 ACGTCG
1 ACGTCG
22030169 TGACGTCGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.39, G:0.28, T:0.25
Consensus pattern (15 bp):
ACGTCGGTGTCCTCC
Found at i:22033936 original size:25 final size:26
Alignment explanation
Indices: 22033899--22033966 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
22033889 ATTTGACCCT
*
22033899 ATTAATTTAAATTTAAA-TTCGATGCA
1 ATTAATTTAAATTTAAATTTC-ATCCA
*
22033925 ATT-ATTTAAATTTAAATTTCATCCC
1 ATTAATTTAAATTTAAATTTCATCCA
22033950 ATTAATTTAAATTTAAA
1 ATTAATTTAAATTTAAA
22033967 CTAAATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 19 0.50
26 19 0.50
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (26 bp):
ATTAATTTAAATTTAAATTTCATCCA
Found at i:22034424 original size:19 final size:19
Alignment explanation
Indices: 22034399--22034490 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
22034389 AATTTTTGAG
22034399 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
22034418 AATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
*
22034437 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
22034456 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22034475 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22034491 ATATATGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22035680 original size:98 final size:98
Alignment explanation
Indices: 22035553--22035747 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
22035543 AAAAATCATG
*
22035553 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22035618 AAATCTTGGATAAGTGGATGTTTTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
22035651 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22035716 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
22035748 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:22037267 original size:43 final size:42
Alignment explanation
Indices: 22037150--22037284 Score: 175
Period size: 43 Copynumber: 3.2 Consensus size: 42
22037140 TCGTCACTAA
* *
22037150 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGA-CAATGAC
1 CTTTAGCGGCGCTTTTCCC-CCAACGCCGCTAAAAACCAA-GAC
* * *
22037193 TTTTAGCGACGC-TTTCCCCCAACGCTGCTAAAAACCAAGAC
1 CTTTAGCGGCGCTTTTCCCCCAACGCCGCTAAAAACCAAGAC
*
22037234 CTTTAGCGGCGCTTTTCCCTCCAACGCCGCTAAAAACCAAAAC
1 CTTTAGCGGCGCTTTTCCC-CCAACGCCGCTAAAAACCAAGAC
22037277 CTTTAGCG
1 CTTTAGCG
22037285 ACACTTTCTC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
41 26 0.32
42 15 0.19
43 39 0.49
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.22
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCCCCAACGCCGCTAAAAACCAAGAC
Found at i:22037303 original size:43 final size:42
Alignment explanation
Indices: 22037150--22037311 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
22037140 TCGTCACTAA
* *
22037150 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGA-CAATGAC
1 CTTTAGCGACGC-TTTCCCACAAACGCCGCTAAAAACCAA-GAC
* * *
22037193 TTTTAGCGACGCTTTCCC-CCAACGCTGCTAAAAACCAAGAC
1 CTTTAGCGACGCTTTCCCACAAACGCCGCTAAAAACCAAGAC
* * * *
22037234 CTTTAGCGGCGCTTTTCCCTCCAACGCCGCTAAAAACCAAAAC
1 CTTTAGCGACGC-TTTCCCACAAACGCCGCTAAAAACCAAGAC
* * *
22037277 CTTTAGCGACACTTTCTCCAAAAACGCCACTAAAA
1 CTTTAGCGACGCTTTC-CCACAAACGCCGCTAAAA
22037312 GTCACAAAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 26 0.26
42 19 0.19
43 55 0.55
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (42 bp):
CTTTAGCGACGCTTTCCCACAAACGCCGCTAAAAACCAAGAC
Found at i:22038356 original size:45 final size:45
Alignment explanation
Indices: 22038299--22038440 Score: 160
Period size: 45 Copynumber: 3.1 Consensus size: 45
22038289 TGCAGCACTT
22038299 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
* ** * ** * * * * *
22038344 AAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGC-ACTT
1 AAACATATCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TA
22038390 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
22038435 AAACAT
1 AAACAT
22038441 CTCCATTTCC
Statistics
Matches: 72, Mismatches: 22, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
45 39 0.54
46 33 0.46
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.27
Consensus pattern (45 bp):
AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
Found at i:22038424 original size:114 final size:114
Alignment explanation
Indices: 22038205--22038502 Score: 329
Period size: 114 Copynumber: 2.6 Consensus size: 114
22038195 AAAGTAGCAC
* *
22038205 TTTAACACTTCAATTTACAGCGATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCA
1 TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
** * *
22038270 GCACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACA
66 GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAACAACA
*
22038319 TTTATACACCTCAA-TTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGC
1 TTTA-ACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
* * * *
22038383 AGCACTTAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGCGA
65 AGCACTTAAACACT-TCAATTAACAACACTTAAACACATCAATTAACAAC-A
** * * * * *
22038433 TAAAACATCTCCATTTCCAGCAACTAAATAC-T-TCAATTTGCAGC-ACTTAAACACTTCAATTT
1 TTTAACACCTCAATTTACAGCGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTT
*
22038495 GCAACACT
63 GCAGCACT
22038503 ATCAAATTTC
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
113 14 0.09
114 128 0.82
115 13 0.08
116 2 0.01
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (114 bp):
TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAACAACA
Found at i:22038495 original size:23 final size:23
Alignment explanation
Indices: 22038200--22038502 Score: 191
Period size: 23 Copynumber: 13.3 Consensus size: 23
22038190 AATGGAAAGT
* *
22038200 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTGC
*
22038223 AGCGA-TAAAACA-TCTCAATTTGC
1 AGC-ACTTAAACACT-TCAATTTGC
22038246 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTGC
22038269 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTGC
**
22038292 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTGC
* * * * *
22038315 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTGC
* *
22038337 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTGC
*
22038360 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTGC
**
22038383 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTGC
* * * * *
22038406 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTGC
* * *
22038428 AGCGA-TAAAACA-TCTCCATTTCC
1 AGC-ACTTAAACACT-TCAATTTGC
*
22038451 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTGC
22038474 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTGC
*
22038497 AACACT
1 AGCACT
22038503 ATCAAATTTC
Statistics
Matches: 217, Mismatches: 42, Indels: 42
0.72 0.14 0.14
Matches are distributed among these distances:
22 36 0.17
23 177 0.82
24 4 0.02
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.29
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTGC
Found at i:22038500 original size:91 final size:91
Alignment explanation
Indices: 22038260--22038493 Score: 409
Period size: 91 Copynumber: 2.6 Consensus size: 91
22038250 ACTAAACACT
* *
22038260 TCAATTTGCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAT
1 TCAATTTCCAGCAAC-TAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAT
22038324 ACACCTCAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
22038351 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
22038416 CACCTCAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
*
22038442 TCCATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACT-TCAATT
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACA-TATCAATT
22038494 TGCAACACTA
Statistics
Matches: 138, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
91 135 0.98
92 3 0.02
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATC
Found at i:22038921 original size:41 final size:39
Alignment explanation
Indices: 22038838--22038921 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
22038828 GCACAATACA
* * **
22038838 ATATAAAAAGCATATATAAGTATATGAATGTAGAGGCAT
1 ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
*
22038877 ATATAAAAAGCATATATAAATATATGTATGTCACAGAAACT
1 ATATAAAAAGCATATATAAATATATGAATGT-ACAGAAA-T
22038918 ATAT
1 ATAT
22038922 TCATTTATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 29 0.76
40 4 0.11
41 5 0.13
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (39 bp):
ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
Found at i:22041302 original size:146 final size:147
Alignment explanation
Indices: 22040943--22041855 Score: 981
Period size: 146 Copynumber: 6.1 Consensus size: 147
22040933 TTATTCTATT
*
22040943 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCACTATTGCTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
* *
22041008 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTTATTTCGAACAAAACGACGCCGTTTTGCT
66 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
22041073 ATTCTAAA-TTTTTTTA
131 ATTCTAAATTTTTTTTA
22041089 TTTTTTT-ATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
22041153 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
66 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
22041218 ATTCTAAA-TTTTTTTA
131 ATTCTAAATTTTTTTTA
* *
22041234 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACTGCTATTGCTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
22041299 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGC
66 TAGCGGCGCTTCTTATAAAACGCCGCAAAA-TTTTTTCATTTTGAACAAAACGACGCCGTTTTGC
22041364 TATTCTAAATTTTTTTTA
130 TATTCTAAATTTTTTTTA
* *
22041382 TTTTCTTAATAAACTGATTTATTCTTTGCGGCG------T---AAACGCCGCTATTGCTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACC-T
* * * * * *
22041438 TTTGCGGCG-------T-AAACGCCGC-TATTGCTTACCTTTAGCAGTGCTTCT-TATAAAACGC
65 TTAGCGGCGCTTCTTATAAAACGCCGCAAAAT--TT---TTT--CA-T--TT-TGAACAAAACGA
** * * *
22041493 CGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTAAA
119 CGC---CGTTTTGC-TATT---C-TAA--A--------T-----T-T---TTTTT--A
*
22041551 TTTTTTTAATAAATTGATTTATTCTTTGCGGCG------T---AAACGCCGCTATTGTTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
* * *
22041607 TAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTCGAACAAAACGACGCCATTTTGCT
66 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
22041672 ATTCTAAATTTTTTTTA
131 ATTCTAAATTTTTTTTA
*
22041689 TTTTTTT-ATAAATTGATTTATTCTTTGTGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
1 TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
* * *
22041753 TAGCGGCGCTTCTTATAAAACGCCACAAATTTTTTTCATTTTGAACAAAACGACGCTGTTTTGCT
66 TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
22041818 ATTCTAAATTTTTTTTA
131 ATTCTAAATTTTTTTTA
*
22041835 TTTTTTTTATAAATTGATTTA
1 TTTTTTTAATAAATTGATTTA
22041856 AAAATGCCGC
Statistics
Matches: 659, Mismatches: 44, Indels: 127
0.79 0.05 0.15
Matches are distributed among these distances:
130 1 0.00
131 1 0.00
132 11 0.02
133 1 0.00
135 3 0.00
137 26 0.04
138 9 0.01
139 18 0.03
140 26 0.04
141 1 0.00
142 1 0.00
143 7 0.01
144 4 0.01
145 142 0.22
146 196 0.30
147 57 0.09
148 41 0.06
149 1 0.00
150 1 0.00
157 1 0.00
158 1 0.00
159 2 0.00
160 1 0.00
163 4 0.01
164 6 0.01
167 17 0.03
168 8 0.01
169 53 0.08
170 2 0.00
172 3 0.00
175 3 0.00
176 9 0.01
177 2 0.00
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (147 bp):
TTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
TAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
ATTCTAAATTTTTTTTA
Found at i:22041447 original size:32 final size:32
Alignment explanation
Indices: 22041406--22041470 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
22041396 TGATTTATTC
22041406 TTTGCGGCGTAAACGCCGCTATTGCTTACCTT
1 TTTGCGGCGTAAACGCCGCTATTGCTTACCTT
22041438 TTTGCGGCGTAAACGCCGCTATTGCTTACCTT
1 TTTGCGGCGTAAACGCCGCTATTGCTTACCTT
22041470 T
1 T
22041471 AGCAGTGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.35
Consensus pattern (32 bp):
TTTGCGGCGTAAACGCCGCTATTGCTTACCTT
Found at i:22041606 original size:169 final size:171
Alignment explanation
Indices: 22041284--22041607 Score: 571
Period size: 169 Copynumber: 1.9 Consensus size: 171
22041274 AGAAAACACT
*
22041284 GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTTCATTTTGAACAAA
1 GCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTTCATTTTGAACAAA
**
22041349 ACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTCTTAATAAACTGATTTATTCTTTGCGGC
66 ACGACGCCGTTTTGCTATTCTAAATTTTTTAAATTTTCTTAATAAACTGATTTATTCTTTGCGGC
22041414 GTAAACGCCGCTATTGCTTACCTTTTTGCGGCGTAAACGCC
131 GTAAACGCCGCTATTGCTTACCTTTTTGCGGCGTAAACGCC
*
22041455 GCTATTGCTTACCTTTAGCAGTGCTTCTTATAAAACGCCGCAAAA-TTTTTTCATTTTGAACAAA
1 GCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTTCATTTTGAACAAA
* *
22041519 ACGACGCCGTTTTGCTATTCTAAA-TTTTTAAATTTTTTTAATAAATTGATTTATTCTTTGCGGC
66 ACGACGCCGTTTTGCTATTCTAAATTTTTTAAATTTTCTTAATAAACTGATTTATTCTTTGCGGC
*
22041583 GTAAACGCCGCTATTGTTTACCTTT
131 GTAAACGCCGCTATTGCTTACCTTT
22041608 AGCAGCGCTT
Statistics
Matches: 146, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
169 60 0.41
170 43 0.29
171 43 0.29
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (171 bp):
GCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTTCATTTTGAACAAA
ACGACGCCGTTTTGCTATTCTAAATTTTTTAAATTTTCTTAATAAACTGATTTATTCTTTGCGGC
GTAAACGCCGCTATTGCTTACCTTTTTGCGGCGTAAACGCC
Found at i:22041609 original size:137 final size:138
Alignment explanation
Indices: 22041438--22041988 Score: 781
Period size: 137 Copynumber: 4.0 Consensus size: 138
22041428 TGCTTACCTT
*
22041438 TTTGCGGCGTAAACGCCGCTATTGCTTACCTTTAGCAGTGCTTCTTATAAAACGCCGCAAAATTT
1 TTTGCGGCGTAAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTT
**
22041503 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAA-TTTTTAAATTTTTTTAATAAATTG
66 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTG
22041567 ATTTATTC
131 ATTTATTC
*
22041575 TTTGCGGCGTAAACGCCGCTATTGTTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTT
1 TTTGCGGCGTAAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTT
* *
22041640 TTTCATTTCGAACAAAACGACGCCATTTTGCTATTCTAAATTTTTTTTATTTTTTT-ATAAATTG
66 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTG
22041704 ATTTATTC
131 ATTTATTC
* *
22041712 TTTGTGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCC
1 TTTGCGGCG------T---AAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCC
* * *
22041777 ACAAATTTTTTTCATTTTGAACAAAACGACGCTGTTTTGCTATTCTAAATTTTTTTTATTTTTTT
57 GCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTT
*
22041842 TATAAATTGATTTA---
122 AATAAATTGATTTATTC
* * *
22041856 ---------AAAATGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTT
1 TTTGCGGCGTAAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTT
22041912 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAA-TTTTTTTATTTTTTTAATAAATTG
66 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTG
22041976 ATTTATTC
131 ATTTATTC
22041984 TTTGC
1 TTTGC
22041989 AACGTTTTTA
Statistics
Matches: 375, Mismatches: 20, Indels: 42
0.86 0.05 0.10
Matches are distributed among these distances:
125 28 0.07
126 91 0.24
137 125 0.33
138 13 0.03
143 1 0.00
146 104 0.28
147 13 0.03
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.43
Consensus pattern (138 bp):
TTTGCGGCGTAAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTT
TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTG
ATTTATTC
Found at i:22041888 original size:126 final size:125
Alignment explanation
Indices: 22041730--22041980 Score: 448
Period size: 126 Copynumber: 2.0 Consensus size: 125
22041720 GTTTTTATAG
*
22041730 AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCACAAATTTTTTTCATTTT
1 AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTT
* *
22041795 GAACAAAACGACGCTGTTTTGCTATTCTAAATTTTTTTTATTTTTTTTATAAATTGATTTA
66 GAACAAAACGACGCCGTTTTGCTATTCTAAA-TTTTTTTATTTTTTTAATAAATTGATTTA
* *
22041856 AAAATGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTT
1 AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTT
22041921 GAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTA
66 GAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTA
22041981 TTCTTTGCAA
Statistics
Matches: 120, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 28 0.23
126 92 0.77
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.43
Consensus pattern (125 bp):
AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTT
GAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTA
Found at i:22041954 original size:272 final size:272
Alignment explanation
Indices: 22041448--22042015 Score: 852
Period size: 272 Copynumber: 2.0 Consensus size: 272
22041438 TTTGCGGCGT
* *
22041448 AAACGCCGCTATTGCTTACCTTTAGCAGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTG
1 AAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTTG
22041513 AACAAAACGACGCCGTTTTGCTATTCTAAATTTTTAAATTTTTTTAATAAATTGATTTATTCTTT
66 AACAAAACGACGCCGTTTTGCTATTCTAAATTTTTAAATTTTTTTAATAAATTGATTTA-----T
* *
22041578 GCGGCGTAAACGCCGCTATTGTTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTT
126 ------AAAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTT
22041643 CATTTCGAACAAAACGACGCCATTTTGCTATTCTAAATTTTTTTTATTTTTTT-ATAAATTGATT
185 CATTTCGAACAAAACGACGCCATTTTGCTATTCTAAA-TTTTTTTATTTTTTTAATAAATTGATT
***
22041707 TATTCTTTGTGGCGTTTTTATAGA
249 TATTCTTTGCAACGTTTTTATAGA
* *
22041731 AAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCACAAATTTTTTTCATTTTG
1 AAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTTG
* ** *
22041796 AACAAAACGACGCTGTTTTGCTATTCTAAATTTTTTTTATTTTTTTTATAAATTGATTTA-AAAA
66 AACAAAACGACGCCGTTTTGCTATTCTAAA-TTTTTAAATTTTTTTAATAAATTGATTTATAAAA
* * *
22041860 TGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAAC
130 CGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTCGAAC
*
22041925 AAAACGACGCCGTTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCA
195 AAAACGACGCCATTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCA
22041990 ACGTTTTTATAGA
260 ACGTTTTTATAGA
22042003 AAACGCCGCTATT
1 AAACGCCGCTATT
22042016 TCATTTTGAA
Statistics
Matches: 266, Mismatches: 17, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
271 15 0.06
272 135 0.51
283 90 0.34
284 26 0.10
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.42
Consensus pattern (272 bp):
AAACGCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCACAAAATTTTTTCATTTTG
AACAAAACGACGCCGTTTTGCTATTCTAAATTTTTAAATTTTTTTAATAAATTGATTTATAAAAC
GCCGCTATTGCTTACCTTTAGCAGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTCGAACA
AAACGACGCCATTTTGCTATTCTAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCAA
CGTTTTTATAGA
Found at i:22042326 original size:7 final size:7
Alignment explanation
Indices: 22042306--22042354 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
22042296 AACCTTAAAT
22042306 CCCTAAC
1 CCCTAAC
* *
22042313 TCTTAAC
1 CCCTAAC
22042320 CCCTAAC
1 CCCTAAC
**
22042327 ATCTAAC
1 CCCTAAC
22042334 CCCTAAAC
1 CCCT-AAC
22042342 CCCTAAC
1 CCCTAAC
22042349 CCCTAA
1 CCCTAA
22042355 ACTTTAAATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:22042349 original size:15 final size:15
Alignment explanation
Indices: 22042316--22042356 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
22042306 CCCTAACTCT
*
22042316 TAACCCCT-AACATC
1 TAACCCCTAAACACC
*
22042330 TAACCCCTAAACCCC
1 TAACCCCTAAACACC
22042345 TAACCCCTAAAC
1 TAACCCCTAAAC
22042357 TTTAAATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (15 bp):
TAACCCCTAAACACC
Found at i:22042617 original size:22 final size:20
Alignment explanation
Indices: 22042592--22042640 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
22042582 ATCCCTGAAT
* *
22042592 CCCTAACTTTTAATCCATAAAC
1 CCCTAACCTTAAATCC-T-AAC
22042614 CCCTAAACCTTAAATCCTAAC
1 CCCT-AACCTTAAATCCTAAC
22042635 CCCTAA
1 CCCTAA
22042641 TCCATAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 2 0.08
21 7 0.29
22 5 0.21
23 10 0.42
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (20 bp):
CCCTAACCTTAAATCCTAAC
Done.