Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 76 of 207
Found at i:22042653 original size:21 final size:21
Alignment explanation
Indices: 22042602--22042654 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
22042592 CCCTAACTTT
* *
22042602 TAATCCATAAACCCCTAAACCT
1 TAATCCCT-AACCCCTAAACCA
*
22042624 TAAAT-CCTAACCCCTAATCCA
1 T-AATCCCTAACCCCTAAACCA
22042645 TAATCCCTAA
1 TAATCCCTAA
22042655 ACCCATACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.12
21 17 0.65
22 3 0.12
23 3 0.12
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.25
Consensus pattern (21 bp):
TAATCCCTAACCCCTAAACCA
Found at i:22042666 original size:15 final size:15
Alignment explanation
Indices: 22042602--22042672 Score: 56
Period size: 15 Copynumber: 4.9 Consensus size: 15
22042592 CCCTAACTTT
* *
22042602 TAATCCATAAACCCC
1 TAATCCCTAAACCCA
* * *
22042617 TAAACCTTAAATCC-
1 TAATCCCTAAACCCA
* *
22042631 TAACCCCT-AATCCA
1 TAATCCCTAAACCCA
22042645 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
22042660 TACTCCCTAAACC
1 TAATCCCTAAACC
22042673 TTAAAATATG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
13 5 0.11
14 13 0.28
15 28 0.61
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:22042765 original size:252 final size:258
Alignment explanation
Indices: 22042386--22043040 Score: 1054
Period size: 268 Copynumber: 2.5 Consensus size: 258
22042376 ACCATAATCA
* * *
22042386 CTAATTCATAATCCCTAAATCCATATTCCCTAAACCTT-AAATATGAACTCCTAAACCGGCTTTA
1 CTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCTTTA
22042450 AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTCTTTTAC
66 AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTCTTTTAC
22042515 AATTATATAAGAACATATTTAAAATATAAATT-AAAAATAATTAATCTAAACCCAAAACCCTAAC
131 AATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTAAACCCAAAACCCTAAC
*
22042579 TCGATCCCTGAATCCCTAACTTTTAAT-CC-A-T-A-AACCCCTAAACCTTAAATCCTAACCC
196 TCGACCCCTGAATCCCTAACTTTTAATCCCAACTAACAACCCCTAAACCTTAAATCCTAACCC
*
22042637 CTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCAGCTTTA
1 CTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCTTTA
* *
22042702 AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTTTTATTATATCTTTTAC
66 AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTCTTTTAC
22042767 AATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTAAACCCAAAACCCTAAC
131 AATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTAAACCCAAAACCCTAAC
22042832 TCGACCCCTGAATCCCTAACTTTTAATCCCTAAACCCCTAACCCTCTAACCCCTAAACCTTAAAT
196 TCGACCCCTGAATCCCTAACTTTTAATCCC--AA---CTAA----C-AACCCCTAAACCTTAAAT
22042897 CCTAACCC
251 CCTAACCC
* * *
22042905 CTAATCCATAATCCTTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAATCGGCCTTA
1 CTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCTTTA
* * *
22042970 AATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACAAATTTATTATTATCTCATTTAC
66 AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTCTTTTAC
22043035 AATTAT
131 AATTAT
22043041 TTTAAATAAT
Statistics
Matches: 371, Mismatches: 16, Indels: 17
0.92 0.04 0.04
Matches are distributed among these distances:
251 35 0.09
252 120 0.32
253 58 0.16
254 2 0.01
257 1 0.00
261 1 0.00
262 1 0.00
268 153 0.41
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (258 bp):
CTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCTTTA
AATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTCTTTTAC
AATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTAAACCCAAAACCCTAAC
TCGACCCCTGAATCCCTAACTTTTAATCCCAACTAACAACCCCTAAACCTTAAATCCTAACCC
Found at i:22042938 original size:15 final size:15
Alignment explanation
Indices: 22042855--22042940 Score: 52
Period size: 15 Copynumber: 5.9 Consensus size: 15
22042845 CCCTAACTTT
*
22042855 TAATCCCTAAACCCC
1 TAATCCCTAAACCCA
* *
22042870 TAA-CCCTCTAACCCC
1 TAATCCCT-AAACCCA
* * *
22042885 TAAACCTTAAATCC-
1 TAATCCCTAAACCCA
* *
22042899 TAACCCCT-AATCCA
1 TAATCCCTAAACCCA
*
22042913 TAATCCTTAAACCCA
1 TAATCCCTAAACCCA
*
22042928 TACTCCCTAAACC
1 TAATCCCTAAACC
22042941 TTAAAATATG
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
13 5 0.09
14 16 0.29
15 32 0.57
16 3 0.05
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:22043402 original size:41 final size:41
Alignment explanation
Indices: 22043356--22043446 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
22043346 TAGGTTTTTT
*
22043356 GCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
22043397 GCGGCGCTTTCCCAATAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
22043438 GCGGCGCTT
1 GCGGCGCTT
22043447 CCTTTTAAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (41 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:22043458 original size:41 final size:42
Alignment explanation
Indices: 22043356--22043465 Score: 163
Period size: 41 Copynumber: 2.7 Consensus size: 42
22043346 TAGGTTTTTT
*
22043356 GCGGCGCTTTCCCAA-AAACGCTGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCCAATAAACGCCGCTAAAGCCCTGAGCATTA
22043397 GCGGCGCTTTCCCAAT-AACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCCAATAAACGCCGCTAAAGCCCTGAGCATTA
***
22043438 GCGGCGC-TTCCTTTTAAACGCCGCTAAA
1 GCGGCGCTTTCCCAATAAACGCCGCTAAA
22043466 TCCCCGAAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
40 5 0.08
41 58 0.92
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.21
Consensus pattern (42 bp):
GCGGCGCTTTCCCAATAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:22043559 original size:155 final size:152
Alignment explanation
Indices: 22043244--22043579 Score: 465
Period size: 155 Copynumber: 2.2 Consensus size: 152
22043234 GGTTTTTTTT
* * * *
22043244 GCGGCGCTTTTCCAAAAATGCCGCTAAAGCCTTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGC-TTTCCCAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGC
* *
22043309 TAAATCCCTAAAGCTTAGAAAACGGCGTCGTGGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAA
65 TAAATCCCGAAAGCTCAGAAAACGGCGTCGTGGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAA
* *
22043374 CGCTGCTAAAGCCCTGAGCATTA
130 CGCCGCTAAAGCCCGGAGCATTA
**
22043397 GCGGCGCTTTCCCAATAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTTTAAACGCCGC
1 GCGGCGCTTTCCCAA-AACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGC
* * * ** *
22043462 TAAATCCCCGAAAGCTCATAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTTGCAGA
65 TAAAT-CCCGAAAGCTCAGAAAACGGCGTCGTGGGGCTTAGG-TTTTTTGCGGCGCTTTCCCAAA
22043527 AACGCCGCTAAAGCCCGGAGCATTA
128 AACGCCGCTAAAGCCCGGAGCATTA
**
22043552 GCGGCGCTTTCTTAGAAACGCCGCTAAA
1 GCGGCGCTTTCCCA-AAACGCCGCTAAA
22043580 TCCCCGAAAG
Statistics
Matches: 161, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
152 7 0.04
153 56 0.35
154 32 0.20
155 65 0.40
156 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (152 bp):
GCGGCGCTTTCCCAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCT
AAATCCCGAAAGCTCAGAAAACGGCGTCGTGGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAAC
GCCGCTAAAGCCCGGAGCATTA
Found at i:22043600 original size:114 final size:113
Alignment explanation
Indices: 22043399--22043650 Score: 364
Period size: 114 Copynumber: 2.2 Consensus size: 113
22043389 GAGCATTAGC
* * * **
22043399 GGCGCTTTCCCAATAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTTTAAACGCCGCTA
1 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTCCTTAGAAACGCCGCTA
*
22043464 AATCCCCGAAAGCTCATAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGT
66 AATCCCCGAAAGCTCATAAAACGACGTCGTTGGGCTTAGG-TTTTTTGT
* *
22043513 GGCGCTTT-TGCAGAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTTCTTAGAAACGCCGCT
1 GGCGCTTTCT-CAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTCCTTAGAAACGCCGCT
*
22043577 AAATCCCCGAAAGCTCGA-GAAACGACGTCGTTGGGCTTAGGTTTTTTGT
65 AAATCCCCGAAAGCTC-ATAAAACGACGTCGTTGGGCTTAGGTTTTTTGT
* *
22043626 GGTGCTTTCTCAAAAATGCCGCTAA
1 GGCGCTTTCTCAAAAACGCCGCTAA
22043651 TGCTTATTTT
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
113 28 0.23
114 94 0.76
115 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (113 bp):
GGCGCTTTCTCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTCCTTAGAAACGCCGCTA
AATCCCCGAAAGCTCATAAAACGACGTCGTTGGGCTTAGGTTTTTTGT
Found at i:22043736 original size:12 final size:12
Alignment explanation
Indices: 22043719--22043744 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22043709 TTTTTTATCC
22043719 AAACGCCGCTAA
1 AAACGCCGCTAA
22043731 AAACGCCGCTAA
1 AAACGCCGCTAA
22043743 AA
1 AA
22043745 GCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:22050180 original size:16 final size:17
Alignment explanation
Indices: 22050149--22050181 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22050139 ATTTTAATAA
*
22050149 TTTAAATTATTTATTAC
1 TTTAAATTAATTATTAC
22050166 TTTAAA-TAATTATTAC
1 TTTAAATTAATTATTAC
22050182 ATGATGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAAATTAATTATTAC
Found at i:22052003 original size:31 final size:31
Alignment explanation
Indices: 22051967--22052033 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
22051957 AGTTCAGAAG
22051967 TACTTGGTAAAGGAATGATTTTACTCAAACT
1 TACTTGGTAAAGGAATGATTTTACTCAAACT
22051998 TACTTGGTAAAGGAATGATTTTACTCAAACT
1 TACTTGGTAAAGGAATGATTTTACTCAAACT
22052029 TACTT
1 TACTT
22052034 CTGGCAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.37
Consensus pattern (31 bp):
TACTTGGTAAAGGAATGATTTTACTCAAACT
Found at i:22055101 original size:87 final size:86
Alignment explanation
Indices: 22054994--22055155 Score: 213
Period size: 87 Copynumber: 1.9 Consensus size: 86
22054984 CATGCATAAG
* *
22054994 GTTGAGTTCTTACTCTTAATGAATTCA-TATC-TCATG-TTTTAGGTGGTCCTATTTAGACGGAC
1 GTTGAGTTCTTACTCTTAATGAATT-ATTATCGT-A-GAGTTTAGGTGGTCCTATTGAGACGGAC
22055056 ATGATGAATTCACCGACATGTGAA
63 ATGATGAATTCACCGACATGTGAA
* * * *
22055080 GTTGAGTTTCTTACTTTTAATGAGTTATTATCGTAGAGTTTAGTTGGTCCTATTGAGACGGACTT
1 GTTGAG-TTCTTACTCTTAATGAATTATTATCGTAGAGTTTAGGTGGTCCTATTGAGACGGACAT
22055145 GATGAATTCAC
65 GATGAATTCAC
22055156 TGAATTTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
86 8 0.12
87 57 0.86
88 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (86 bp):
GTTGAGTTCTTACTCTTAATGAATTATTATCGTAGAGTTTAGGTGGTCCTATTGAGACGGACATG
ATGAATTCACCGACATGTGAA
Found at i:22062638 original size:36 final size:36
Alignment explanation
Indices: 22062598--22062669 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
22062588 TGAGATTGTC
22062598 AAATTGCTTGGTGTACCATTGTCAATCATTTCTGAT
1 AAATTGCTTGGTGTACCATTGTCAATCATTTCTGAT
22062634 AAATTGCTTGGTGTACCATTGTCAATCATTTCTGAT
1 AAATTGCTTGGTGTACCATTGTCAATCATTTCTGAT
22062670 CGCGATTCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (36 bp):
AAATTGCTTGGTGTACCATTGTCAATCATTTCTGAT
Found at i:22064223 original size:77 final size:77
Alignment explanation
Indices: 22064135--22064288 Score: 254
Period size: 77 Copynumber: 2.0 Consensus size: 77
22064125 AGAGTTTGGT
* * * *
22064135 TATTAAATAGGGCTATTTTGTAAAGAATTTTTTTTTAGTTTCGAGTTTAAGTACTAAATTGATAG
1 TATTAAATAGGGCTATGTTGTAAAGAAATTTTTGTTAGTTTCGAGTTTAAGTACCAAATTGATAG
22064200 AGATCTAATTTA
66 AGATCTAATTTA
*
22064212 TATTAAATAGGGCTATGTTGTAAAGAAATTTTTGTTAGTTTTGAGTTTAAGTACCAAATTGATAG
1 TATTAAATAGGGCTATGTTGTAAAGAAATTTTTGTTAGTTTCGAGTTTAAGTACCAAATTGATAG
*
22064277 AGATTTAATTTA
66 AGATCTAATTTA
22064289 ACATGTAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (77 bp):
TATTAAATAGGGCTATGTTGTAAAGAAATTTTTGTTAGTTTCGAGTTTAAGTACCAAATTGATAG
AGATCTAATTTA
Found at i:22075930 original size:21 final size:20
Alignment explanation
Indices: 22075904--22075954 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
22075894 TAACCAGACC
*
22075904 AAAAAATATAAAATAATTGTA
1 AAAAAATATAAAA-AATAGTA
* *
22075925 CAAAAATTATTAAAAATAGTA
1 -AAAAAATATAAAAAATAGTA
22075946 AAAAAATAT
1 AAAAAATAT
22075955 TTTAAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.32
21 6 0.24
22 11 0.44
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAAATATAAAAAATAGTA
Found at i:22076081 original size:20 final size:22
Alignment explanation
Indices: 22076037--22076087 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
22076027 TTTTTATTAT
* *
22076037 TTTAAAATTGTTAAAACAGATA
1 TTTAAAATTGATAAAACAAATA
22076059 TTTAAAATT-ATAAAA-AAATA
1 TTTAAAATTGATAAAACAAATA
22076079 TTTAAAATT
1 TTTAAAATT
22076088 TGTAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 13 0.48
21 5 0.19
22 9 0.33
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (22 bp):
TTTAAAATTGATAAAACAAATA
Found at i:22076094 original size:20 final size:20
Alignment explanation
Indices: 22076057--22076150 Score: 84
Period size: 20 Copynumber: 4.7 Consensus size: 20
22076047 TTAAAACAGA
* *
22076057 TATTTAAAATTAT-AAAAAAA
1 TATTTAAAATT-TGTAAAAAT
22076077 TATTTAAAATTTGTAAAAAT
1 TATTTAAAATTTGTAAAAAT
* *
22076097 TA-TTAAAATTTGTGAAAGT
1 TATTTAAAATTTGTAAAAAT
* * *
22076116 TATTAAAAAATTGCAAATAAT
1 TATTTAAAATTTGTAAA-AAT
*
22076137 TATTAAAAATTTGT
1 TATTTAAAATTTGT
22076151 GAACAAGTGG
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
19 18 0.30
20 28 0.47
21 14 0.23
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.40
Consensus pattern (20 bp):
TATTTAAAATTTGTAAAAAT
Found at i:22076095 original size:22 final size:21
Alignment explanation
Indices: 22076037--22076095 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
22076027 TTTTTATTAT
* *
22076037 TTTAAAATTGTTAAAACAGATA
1 TTTAAAATTG-TAAAAAAAATA
*
22076059 TTTAAAATTAT-AAAAAAATA
1 TTTAAAATTGTAAAAAAAATA
22076079 TTTAAAATTTGTAAAAA
1 TTTAAAA-TTGTAAAAA
22076096 TTATTAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 4 0.13
22 13 0.42
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (21 bp):
TTTAAAATTGTAAAAAAAATA
Found at i:22076138 original size:40 final size:40
Alignment explanation
Indices: 22076077--22076153 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 40
22076067 TATAAAAAAA
* * *
22076077 TATTTAAAATTTGTAAAAATTATT-AAAATTTGTGAAAGT
1 TATTAAAAAATTGCAAAAATTATTAAAAATTTGTGAAAGT
22076116 TATTAAAAAATTGCAAATAATTATTAAAAATTTGTGAA
1 TATTAAAAAATTGCAAA-AATTATTAAAAATTTGTGAA
22076154 CAAGTGGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 14 0.42
40 7 0.21
41 12 0.36
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.40
Consensus pattern (40 bp):
TATTAAAAAATTGCAAAAATTATTAAAAATTTGTGAAAGT
Found at i:22083574 original size:41 final size:41
Alignment explanation
Indices: 22083528--22083644 Score: 144
Period size: 41 Copynumber: 2.9 Consensus size: 41
22083518 ACCGACAATT
* *** *
22083528 AGCCTGCTAGACTTATCGTCCGAATTATTTCATCGGCACAA
1 AGCCTGCTAGACATAAAATCCGAATTATTTCACCGGCACAA
*
22083569 AGCCTGCTAGACATAAAATCCTAATTATTTCACCGGCACAA
1 AGCCTGCTAGACATAAAATCCGAATTATTTCACCGGCACAA
* * * *
22083610 AGCTTGCTAGACATAAAGTCCGAATAACTTCACCG
1 AGCCTGCTAGACATAAAATCCGAATTATTTCACCG
22083645 ACCTTAAGCC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAATCCGAATTATTTCACCGGCACAA
Found at i:22085620 original size:47 final size:47
Alignment explanation
Indices: 22085558--22085687 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
22085548 AGTCGATAAT
* * * * *
22085558 TCATCTGTTTGACCAGTGGGTTATCCGCAACTTATTCTAG-TCGGCAA
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCTAGCT-GGCAA
* *
22085605 TCATTTGCTCGACCAGTGGTTTATCCACAACGTATTCTAGCTGGCAG
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCTAGCTGGCAA
*
22085652 TCATCTGCTCGACCATTGGTTTATCCACAACGTATT
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATT
22085688 AGTAGCTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 72 0.99
48 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (47 bp):
TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCTAGCTGGCAA
Found at i:22085806 original size:91 final size:92
Alignment explanation
Indices: 22085621--22085815 Score: 214
Period size: 91 Copynumber: 2.1 Consensus size: 92
22085611 GCTCGACCAG
* * * * * *
22085621 TGGTTTATCCACAACGTATTCTAGCTGGCAGTCATCTGCTCGACCATTGGTTTATCCACAACGTA
1 TGGTTCATCCACAACGTATTCTAGCTGACAGTCATATGCTCAACCAATGGTTTATCCACAACATA
* * * * **
22085686 TTAGTAGCTTTTATATGCACAAATGGA
66 TTAGCAACTTTCATATACACAAACAGA
* *
22085713 TGGTTCATCCACTA-GTATTCTAG-TAGACATTCATATGCTCAACCAATGGTTTATCCACAACAT
1 TGGTTCATCCACAACGTATTCTAGCT-GACAGTCATATGCTCAACCAATGGTTTATCCACAACAT
* * *
22085776 ATTAGCAACTTTCATCTACATAGACAGA
65 ATTAGCAACTTTCATATACACAAACAGA
22085804 TGGTTCATCCAC
1 TGGTTCATCCAC
22085816 CAATAAATTT
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
90 1 0.01
91 72 0.85
92 12 0.14
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (92 bp):
TGGTTCATCCACAACGTATTCTAGCTGACAGTCATATGCTCAACCAATGGTTTATCCACAACATA
TTAGCAACTTTCATATACACAAACAGA
Found at i:22086785 original size:20 final size:21
Alignment explanation
Indices: 22086762--22086806 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
22086752 ATTTAAAAAA
*
22086762 TTAAATAA-TGTTTT-ATAATT
1 TTAAATAACT-TTTTAACAATT
22086782 TT-AATAACTTTTTAACAATT
1 TTAAATAACTTTTTAACAATT
22086802 TTAAA
1 TTAAA
22086807 ATGTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
19 9 0.43
20 10 0.48
21 2 0.10
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAAATAACTTTTTAACAATT
Found at i:22086787 original size:19 final size:20
Alignment explanation
Indices: 22086765--22086813 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
22086755 TAAAAAATTA
*
22086765 AATAATGTTTT-ATAATTTT
1 AATAATGTTTTAACAATTTT
22086784 AATAACT-TTTTAACAATTTT
1 AATAA-TGTTTTAACAATTTT
22086804 AA-AATGTTTT
1 AATAATGTTTT
22086814 TTTACAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 15 0.58
20 10 0.38
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
AATAATGTTTTAACAATTTT
Found at i:22086813 original size:20 final size:20
Alignment explanation
Indices: 22086790--22086856 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
22086780 TTTTAATAAC
22086790 TTTTTAACAATTTTAAAATGT
1 TTTTTAACAATTTTAAAAT-T
* *
22086811 TTTTTTACAATTTT-TAATAT
1 TTTTTAACAATTTTAAAAT-T
* * *
22086831 TTTTTAATAATTTCAATATT
1 TTTTTAACAATTTTAAAATT
22086851 TTTTTA
1 TTTTTA
22086857 CAGTTTTTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
20 22 0.59
21 15 0.41
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (20 bp):
TTTTTAACAATTTTAAAATT
Found at i:22086832 original size:9 final size:9
Alignment explanation
Indices: 22086820--22086903 Score: 53
Period size: 10 Copynumber: 8.7 Consensus size: 9
22086810 TTTTTTTACA
22086820 ATTTTTAAT
1 ATTTTTAAT
22086829 ATTTTTTAAT
1 A-TTTTTAAT
* *
22086839 AATTTCAAT
1 ATTTTTAAT
* *
22086848 ATTTTTTTAC
1 A-TTTTTAAT
22086858 AGTTTTTATAT
1 A-TTTTTA-AT
22086869 ATTTTTAAAT
1 ATTTTT-AAT
22086879 AATTTTTACA-
1 -ATTTTTA-AT
*
22086889 ATTGTTAAT
1 ATTTTTAAT
22086898 ATTTTT
1 ATTTTT
22086904 TTACAATTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
8 1 0.02
9 19 0.33
10 27 0.47
11 10 0.18
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:22086835 original size:19 final size:19
Alignment explanation
Indices: 22086811--22086874 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
22086801 TTTAAAATGT
22086811 TTTTTTACAATTTTTAATA
1 TTTTTTACAATTTTTAATA
* *
22086830 TTTTTTA-ATAATTTCAATA
1 TTTTTTACA-ATTTTTAATA
*
22086849 TTTTTTTACAGTTTTTATATA
1 -TTTTTTACAATTTTTA-ATA
22086870 TTTTT
1 TTTTT
22086875 AAATAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 15 0.42
20 16 0.44
21 4 0.11
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTTACAATTTTTAATA
Found at i:22086863 original size:50 final size:50
Alignment explanation
Indices: 22086809--22086915 Score: 128
Period size: 50 Copynumber: 2.1 Consensus size: 50
22086799 ATTTTAAAAT
* *
22086809 GTTTTTTTACAATTTTT-AATATTTTTTAATAATT-TCAATATTTTTTTACA
1 GTTTTTTTA-AATTTTTAAATAATTTTT-ACAATTGTCAATATTTTTTTACA
* * *
22086859 GTTTTTATATATTTTTAAATAATTTTTACAATTGTTAATATTTTTTTACA
1 GTTTTTTTAAATTTTTAAATAATTTTTACAATTGTCAATATTTTTTTACA
*
22086909 ATTTTTT
1 GTTTTTT
22086916 GGACTGGTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 11 0.23
50 37 0.77
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.63
Consensus pattern (50 bp):
GTTTTTTTAAATTTTTAAATAATTTTTACAATTGTCAATATTTTTTTACA
Found at i:22086915 original size:30 final size:28
Alignment explanation
Indices: 22086850--22086915 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 28
22086840 ATTTCAATAT
* *
22086850 TTTTTTACAGTTTTTATATATTTTTAAA
1 TTTTTTACAATTTTAATATATTTTTAAA
*
22086878 TAATTTTTACAATTGTTAATATTTTTTTACAA
1 T--TTTTTACAATT-TTAATATATTTTTA-AA
22086910 TTTTTT
1 TTTTTT
22086916 GGACTGGTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 1 0.03
30 15 0.48
31 12 0.39
32 3 0.10
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTTTACAATTTTAATATATTTTTAAA
Found at i:22091690 original size:7 final size:7
Alignment explanation
Indices: 22091678--22091730 Score: 70
Period size: 7 Copynumber: 7.4 Consensus size: 7
22091668 GATAGTTTCA
*
22091678 AAACCCT
1 AAACCAT
*
22091685 AAACCCT
1 AAACCAT
*
22091692 AAACCCT
1 AAACCAT
22091699 AAACCAT
1 AAACCAT
22091706 AAACCAT
1 AAACCAT
22091713 AAACCAT
1 AAACCAT
22091720 AAACCAAT
1 AAACC-AT
22091728 AAA
1 AAA
22091731 TATTATTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
7 39 0.89
8 5 0.11
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.13
Consensus pattern (7 bp):
AAACCAT
Found at i:22092983 original size:48 final size:48
Alignment explanation
Indices: 22092915--22093047 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 48
22092905 CTATTTATCA
*
22092915 TGTAGGTTCAACCTTAACGGGTAACCAGGCACTATTACTCATTATTTG
1 TGTAGGTTTAACCTTAACGGGTAACCAGGCACTATTACTCATTATTTG
* * *
22092963 TGTAGGTTTAACCTTGACGGGTAACCATGCACTATTATTCATTATTTG
1 TGTAGGTTTAACCTTAACGGGTAACCAGGCACTATTACTCATTATTTG
** **
22093011 TGTAGGTTTAACCCAAATAGGTAACCAGGCACTATTA
1 TGTAGGTTTAACCTTAACGGGTAACCAGGCACTATTA
22093048 TTTTCACTTG
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (48 bp):
TGTAGGTTTAACCTTAACGGGTAACCAGGCACTATTACTCATTATTTG
Found at i:22095857 original size:26 final size:26
Alignment explanation
Indices: 22095814--22095873 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
22095804 CATATATTCT
*
22095814 CAAAATTTTACTAGGGGTAAAATCAC
1 CAAAATTTTACGAGGGGTAAAATCAC
*
22095840 CAAAATTTTATCGA-GGGTAAAATCAT
1 CAAAATTTTA-CGAGGGGTAAAATCAC
22095866 CAAAATTT
1 CAAAATTT
22095874 AAATTGGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 29 0.94
27 2 0.06
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (26 bp):
CAAAATTTTACGAGGGGTAAAATCAC
Found at i:22095883 original size:26 final size:25
Alignment explanation
Indices: 22095813--22095888 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 25
22095803 GCATATATTC
*
22095813 TCAAAATTTTACTAGGGGTAAAATCA
1 TCAAAA-TTTAATAGGGGTAAAATCA
* * *
22095839 CCAAAATTTTATCGAGGGTAAAATCA
1 TCAAAATTTAATAG-GGGTAAAATCA
*
22095865 TCAAAATTTAAATTGGGGTAAAAT
1 TCAAAATTT-AATAGGGGTAAAAT
22095889 AGGGATGAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
25 5 0.12
26 33 0.80
27 3 0.07
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (25 bp):
TCAAAATTTAATAGGGGTAAAATCA
Found at i:22114097 original size:25 final size:24
Alignment explanation
Indices: 22114067--22114125 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
22114057 GCTTTCTGAT
22114067 TAATGGCTCTCCGAAGCTTCCCGA
1 TAATGGCTCTCCGAAGCTTCCCGA
* * *
22114091 TATATGGTTATCCGAAGCTTCCCGT
1 TA-ATGGCTCTCCGAAGCTTCCCGA
22114116 TAATGGCTCT
1 TAATGGCTCT
22114126 TCGGAGCTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.32
Consensus pattern (24 bp):
TAATGGCTCTCCGAAGCTTCCCGA
Found at i:22114133 original size:24 final size:25
Alignment explanation
Indices: 22114008--22114185 Score: 105
Period size: 24 Copynumber: 7.2 Consensus size: 25
22113998 CTTATAAGCG
* *
22114008 TCCCGATTTATGGTTCTTCGTGAGCT
1 TCCCGATTAATGGCTCTTCG-GAGCT
* *
22114034 TCCCGATTAAAGGCTCTTTGTGAGCT
1 TCCCGATTAATGGCTCTTCG-GAGCT
* * * *
22114060 TTCTGATTAATGGCTCTCCGAAGCT
1 TCCCGATTAATGGCTCTTCGGAGCT
* * * *
22114085 TCCCGA-TATATGGTTATCCGAAGCT
1 TCCCGATTA-ATGGCTCTTCGGAGCT
22114110 TCCCG-TTAATGGCTCTTCGGAGCT
1 TCCCGATTAATGGCTCTTCGGAGCT
* * * **
22114134 ACCTG-TTATTGGCT-TGTATGAGCT
1 TCCCGATTAATGGCTCT-TCGGAGCT
* **
22114158 TCCTGATT-ATGGCTCTTATGAGCT
1 TCCCGATTAATGGCTCTTCGGAGCT
22114182 TCCC
1 TCCC
22114186 TATACAGCCT
Statistics
Matches: 121, Mismatches: 26, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
23 1 0.01
24 51 0.42
25 32 0.26
26 37 0.31
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTCGGAGCT
Found at i:22115634 original size:12 final size:11
Alignment explanation
Indices: 22115612--22115642 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
22115602 ATTAAGTAAA
22115612 TAAATAAATAT
1 TAAATAAATAT
22115623 TAAATGAAATAT
1 TAAAT-AAATAT
22115635 TAAATAAA
1 TAAATAAA
22115643 CTGTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (11 bp):
TAAATAAATAT
Found at i:22117239 original size:44 final size:43
Alignment explanation
Indices: 22117172--22117730 Score: 377
Period size: 44 Copynumber: 12.8 Consensus size: 43
22117162 GATTTGTGGC
*
22117172 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTAG
* * * *
22117216 CTTTAATCTGCTCCACTACAACTTTAGGGAGATAAGGTTTGTTA-
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTG-TAG
* * *
22117260 TTTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAAACTTGTTATG
1 TTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-TA-G
* * * * * *
22117307 GTGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTTA-
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-TAG
* * *
22117351 TTTTCAGTCTGTTCCACTGCAACTTCAGGGAG--AAGACTTCTTATG
1 TTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-GTA-G
* * * * *
22117396 GTGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT-G
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTAG
* * *
22117439 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGT-T
1 -TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTAG
** * * *
22117483 TCTTTCGTCTACTCCACTGCAACATCAGGGAGATAAGACTG--G
1 T-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAG
* * * * * *
22117525 ATGTGATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGT-G
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAG
* * *
22117568 TTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGT-T
1 -TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTAG
* *
22117612 TCTTTTATCTGCTCCACTGCAACTTTAGGGAGATAAGATTG--G
1 T-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAG
* * * * * * *
22117654 ATGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTAG
* * *
22117698 TTTTAATCTACTCCATTGTAACTTCAGGGAGAT
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
22117731 CGGATTGGCT
Statistics
Matches: 394, Mismatches: 95, Indels: 52
0.73 0.18 0.10
Matches are distributed among these distances:
41 59 0.15
42 3 0.01
43 16 0.04
44 214 0.54
45 64 0.16
46 36 0.09
47 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (43 bp):
TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAG
Found at i:22117350 original size:91 final size:90
Alignment explanation
Indices: 22117172--22117730 Score: 462
Period size: 85 Copynumber: 6.4 Consensus size: 90
22117162 GATTTGTGGC
* * * *
22117172 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAG-TA-GCTTTAATCTGCTCCACTA
1 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTTATGGTGTGATCTGCTCTACTA
* * * *
22117234 CAACTTTAGGGAGATAAGGTTTGTTA
65 CAACTTCAGAGAGATAAGATCTGTTA
* *
22117260 TTTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAAACTTGTTATGGTGTGATCTGCTCTACTA
1 TTTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTGTGATCTGCTCTACTA
22117325 CAACTTCAGAGAGATAAGATCTGTTA
65 CAACTTCAGAGAGATAAGATCTGTTA
* * *
22117351 TTTTCAGTCTGTTCCACTGCAACTTCAGGGAG--AAGACTTCTTATGGTGTGATCTGCTCTACTG
1 TTTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTGTGATCTGCTCTACTA
*
22117414 CAACTTCAGAGAGATAAGATCTGTGA
65 CAACTTCAGAGAGATAAGATCTGTTA
* * * * * * *
22117440 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTGGTT-T-CTTTCG-TCTACTCCACT
1 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTTATGGTGT-GATCTGCTCTACT
* * * *
22117501 GCAACATCAGGGAGATAAGA-CTG-GA
64 ACAACTTCAGAGAGATAAGATCTGTTA
* * * * * * * * * * *
22117526 TGTGA-TCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGT-T--TTTAATCCGCTCCACTG
1 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-TATGGTGTGATCTGCTCTACTA
* * *
22117587 CAACTTCAGGGAGATAGGAT-TGGTTTC
65 CAACTTCAGAGAGATAAGATCT-G-TTA
* *
22117614 TTTTA-TCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTG----GATGTGATCTGCTCTACTAC
1 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTGTGATCTGCTCTACTAC
*
22117673 AACTTCAGAGAGATAAGATCT-ATA
66 AACTTCAGAGAGATAAGATCTGTTA
* * * *
22117697 GTTTTAATCTACTCCATTGTAACTTCAGGGAGAT
1 -TTTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
22117731 CGGATTGGCT
Statistics
Matches: 393, Mismatches: 58, Indels: 43
0.80 0.12 0.09
Matches are distributed among these distances:
83 1 0.00
84 5 0.01
85 112 0.28
86 11 0.03
87 6 0.02
88 87 0.22
89 93 0.24
90 9 0.02
91 69 0.18
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (90 bp):
TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTGTGATCTGCTCTACTAC
AACTTCAGAGAGATAAGATCTGTTA
Found at i:22117546 original size:129 final size:129
Alignment explanation
Indices: 22117397--22117744 Score: 527
Period size: 129 Copynumber: 2.7 Consensus size: 129
22117387 CTTCTTATGG
22117397 TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
1 TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
*
22117462 TTCAGGGAGATAGGATTGGTTTCTTTCGTCTACTCCACTGCAACATCAGGGAGATAAGACTGGA
66 TTCAGGGAGATAGGATTGGTTTCTTTCATCTACTCCACTGCAACATCAGGGAGATAAGACTGGA
* * *
22117526 TGTGATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCCACTGCAAC
1 TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
* * * * *
22117591 TTCAGGGAGATAGGATTGGTTTCTTTTATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGA
66 TTCAGGGAGATAGGATTGGTTTCTTTCATCTACTCCACTGCAACATCAGGGAGATAAGACTGGA
* * ** * *
22117655 TGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTAT-AGTTTTAATCTACTCCATTGTAA
1 TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGA-TTTTAATCCGCTCCACTGCAA
* *
22117719 CTTCAGGGAGATCGGATTGGCTTCTT
65 CTTCAGGGAGATAGGATTGGTTTCTT
22117745 CTATCTAACT
Statistics
Matches: 198, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
129 198 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (129 bp):
TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
TTCAGGGAGATAGGATTGGTTTCTTTCATCTACTCCACTGCAACATCAGGGAGATAAGACTGGA
Found at i:22117583 original size:85 final size:88
Alignment explanation
Indices: 22117181--22117653 Score: 273
Period size: 89 Copynumber: 5.4 Consensus size: 88
22117171 CTTTTAGTCT
* * ** * * *
22117181 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTTAATCTGCTCCACTACAACTTTAGGGA
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTTAATCCGCTCCACTGCAACTTCAGGGA
* * * * * *
22117246 GATAAGGTTTGTTATTTTCAGTCT
66 GATAAGATCTGTGATTGT-AATCC
* * * * * * * * *
22117270 GTTCCACTGCAACTTCAGGGAGATAAAACTT-GTTATGGTGTGATCTGCTCTACTACAACTTCAG
1 GCTCCACTGCAACTTCAGAGAGATAAGA-TTGGTT-T-CTTTAATCCGCTCCACTGCAACTTCAG
* * * * *
22117334 AGAGATAAGATCTGTTATTTTCAGTCT
63 GGAGATAAGATCTGTGATTGT-AATCC
* * * * * * * *
22117361 GTTCCACTGCAACTTCAG-G-GAGAAGACTT-CTTATGGTGTGATCTGCTCTACTGCAACTTCAG
1 GCTCCACTGCAACTTCAGAGAGATAAGA-TTGGTT-T-CTTTAATCCGCTCCACTGCAACTTCAG
* *
22117423 AGAGATAAGATCTGTGATTTTAATCC
63 GGAGATAAGATCTGTGATTGTAATCC
* * ** ** *
22117449 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTCGTCTACTCCACTGCAACATCAGGGA
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTTAATCCGCTCCACTGCAACTTCAGGGA
* *
22117514 GATAAGA-CTG-GA-TGTGATCT
66 GATAAGATCTGTGATTGTAATCC
* * *
22117534 GCTCTATTGCAACTTCAGAGAGATAAGATTTGTGTT-TTTAATCCGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGT-TTCTTTAATCCGCTCCACTGCAACTTCAGGG
* * * * *
22117598 AGATAGGAT-TG-GTTTCTTTTATCT
65 AGATAAGATCTGTG-AT-TGTAATCC
* *
22117622 GCTCCACTGCAACTTTAGGGAGATAAGATTGG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGG
22117654 ATGTGATCTG
Statistics
Matches: 320, Mismatches: 53, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
85 66 0.21
86 4 0.01
87 3 0.01
88 82 0.26
89 91 0.28
90 10 0.03
91 64 0.20
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (88 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTTAATCCGCTCCACTGCAACTTCAGGGA
GATAAGATCTGTGATTGTAATCC
Found at i:22117723 original size:173 final size:170
Alignment explanation
Indices: 22117172--22117730 Score: 468
Period size: 173 Copynumber: 3.2 Consensus size: 170
22117162 GATTTGTGGC
* * *
22117172 TTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG-CTTTAATCTGCTCCACTACA
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-GTCTTTAATCTGCTCCACTGCA
* * * * *
22117236 ACTTTAGGGAGATAAGGTTTGTTATTTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAAACTT
65 ACTTCAGGGAGAT-AGGATTGTT-TTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT
*
22117301 GTTATGGTGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTTA-
126 G----GATGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATC--TTAG
* * * * * * *
22117351 TTTTCAGTCTGTTCCACTGCAACTTCAGGGAG--AAGACTTCT-TATGGTGTGATCTGCTCTACT
1 TTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-TGTGT-CTTTAATCTGCTCCACT
* * * * *
22117413 GCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT
62 GCAACTTCAGGGAGATAGGAT-TGT-TTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * * * * * *
22117478 TGGTTTCTTTCG-TCTACTCCACTGCAACATCAGGGAGATAAGA-C-TGG
125 TGG---ATGT-GATCTGCTCTACTACAACTTCAGAGAGATAAGATCTTAG
* * * * * * * *
22117525 ATGTGATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCCACTGCAA
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTTAATCTGCTCCACTGCAA
* *
22117590 CTTCAGGGAGATAGGATTGGTTTCTTTTATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGA
66 CTTCAGGGAGATAGGATT-GTTT-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGA
22117655 TGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAG
129 TGTGATCTGCTCTACTACAACTTCAGAGAGATAAGATCT-TAG
* * *
22117698 TTTTAATCTACTCCATTGTAACTTCAGGGAGAT
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
22117731 CGGATTGGCT
Statistics
Matches: 297, Mismatches: 62, Indels: 48
0.73 0.15 0.12
Matches are distributed among these distances:
169 1 0.00
170 28 0.09
171 1 0.00
172 2 0.01
173 120 0.40
174 7 0.02
175 4 0.01
176 1 0.00
177 28 0.09
178 8 0.03
179 38 0.13
180 59 0.20
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (170 bp):
TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTTAATCTGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTTTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATG
TGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTTAG
Found at i:22117818 original size:50 final size:50
Alignment explanation
Indices: 22117764--22118230 Score: 249
Period size: 50 Copynumber: 9.4 Consensus size: 50
22117754 TACAATTTTT
* *
22117764 GGGAAGTAAGATTCACCGTCGTAGCTTCAATCTATTCCACTACACCGCCA
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* ** * ** * * ** * *
22117814 GGGAAGTAAAATTCACCGTTGCGGCTTCAATCTTTTTAATTACAATGTCG
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* * *
22117864 GGGAA-CAAGATTCACCATTGTAGCTTCAATCTATTCCACTGCACCGCTA
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
** * ** * ** * ** ***
22117913 GGGAAGTAAGATTTGCCATTGCGGCTTCAATCTTTTAAATTGCAATGTTG
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* *
22117963 GGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* * ** * * * ** * **** *
22118012 AGTAAGTAAGATTCGTCGTTGCAGCTTCAATATTTTAAATTGCAATTTCG
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* * * *
22118062 GGGAA-CAAGATTCACCGTTTTAGCTTCAATCTATTCCACTACACCGCTA
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* **** ** * ** * ** * *
22118111 GGAAAGTAAGATTTGTTGTTGCGGCTTCAATCTTTTAAATTGCAATGTCG
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
* *** *
22118161 GGGAA-CAAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
*
22118210 GGGAAGTAAGATTCGCCGTTG
1 GGGAAGTAAGATTCACCGTTG
22118231 CGGCTTTAAT
Statistics
Matches: 288, Mismatches: 125, Indels: 8
0.68 0.30 0.02
Matches are distributed among these distances:
49 134 0.47
50 154 0.53
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (50 bp):
GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCA
Found at i:22117909 original size:99 final size:99
Alignment explanation
Indices: 22117771--22118254 Score: 689
Period size: 99 Copynumber: 4.9 Consensus size: 99
22117761 TTTGGGAAGT
* * * *
22117771 AAGATTCACCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTGC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
* *
22117836 GGCTTCAATCTTTTTAATTACAATGTCGGGGAAC
66 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
* * * *
22117870 AAGATTCACCATTGTAGCTTCAATCTATTCCACTGCACCGCTAGGGAAGTAAGATTTGCCATTGC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
*
22117935 GGCTTCAATCTTTTAAATTGCAATGTTGGGGAAC
66 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
* * * *
22117969 AAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAAGTAAGTAAGATTCGTCGTTGC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
* * *
22118034 AGCTTCAATATTTTAAATTGCAATTTCGGGGAAC
66 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
* * * * * **
22118068 AAGATTCACCGTTTTAGCTTCAATCTATTCCACTACACCGCTAGGAAAGTAAGATTTGTTGTTGC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
22118133 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
66 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
*** *
22118167 AAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
* *
22118232 GGCTTTAATATTTTAAATTGCAA
66 GGCTTCAATCTTTTAAATTGCAA
22118255 CCTCAGGGGT
Statistics
Matches: 338, Mismatches: 47, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 338 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (99 bp):
AAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGC
GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAC
Found at i:22118187 original size:49 final size:49
Alignment explanation
Indices: 22117837--22118192 Score: 185
Period size: 49 Copynumber: 7.2 Consensus size: 49
22117827 CACCGTTGCG
* * * *
22117837 GCTTCAATCTTTTTAATTACAATGTCGGGGAACAAGATTCACCATTGTA
1 GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTA
* ** * ** * * * * **
22117886 GCTTCAATCTATTCCACTGCACCG-CTAGGGAAGTAAGATTTGCCATTGCG
1 GCTTCAATCTTTTAAATTGCAATGTC-GGGGAA-CAAGATTCGCCGTTGTA
* *
22117936 GCTTCAATCTTTTAAATTGCAATGTTGGGGAACAAGATTCACCGTTGTA
1 GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTA
* ** * ** * ** * * * *
22117985 GCTTCAATCTGTTCCACTGCACCGCCAAGTAAGTAAGATTCGTCGTTGCA
1 GCTTCAATCTTTTAAATTGCAATGTCGGGGAA-CAAGATTCGCCGTTGTA
* * * *
22118035 GCTTCAATATTTTAAATTGCAATTTCGGGGAACAAGATTCACCGTTTTA
1 GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTA
* ** * * ** * * * * ** **
22118084 GCTTCAATCTATTCCACTACACCG-CTAGGAAAGTAAGATTTGTTGTTGCG
1 GCTTCAATCTTTTAAATTGCAATGTC-GGGGAA-CAAGATTCGCCGTTGTA
* *
22118134 GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTTGTCGTTGTA
1 GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTA
22118183 GCTTCAATCT
1 GCTTCAATCT
22118193 GTTCCACTGC
Statistics
Matches: 209, Mismatches: 91, Indels: 14
0.67 0.29 0.04
Matches are distributed among these distances:
48 2 0.01
49 108 0.52
50 98 0.47
51 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (49 bp):
GCTTCAATCTTTTAAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTA
Found at i:22119185 original size:16 final size:16
Alignment explanation
Indices: 22119166--22119199 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
22119156 TTTTTTGTTC
22119166 TTCTTTTCT-TTTCTTT
1 TTCTTTT-TGTTTCTTT
22119182 TTCTTTTTGTTTCTTT
1 TTCTTTTTGTTTCTTT
22119198 TT
1 TT
22119200 TTCAAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (16 bp):
TTCTTTTTGTTTCTTT
Found at i:22119185 original size:19 final size:19
Alignment explanation
Indices: 22119150--22119200 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
22119140 AGCCTCTCCT
22119150 TTTTCCTTTTTTGTTCTTC
1 TTTTCCTTTTTTGTTCTTC
* *
22119169 TTTT-CTTTTCTTTTTCTTT
1 TTTTCCTTTT-TTGTTCTTC
*
22119188 TTGTTTCTTTTTT
1 TT-TTCCTTTTTT
22119201 TCAAGTGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 13 0.48
20 4 0.15
21 5 0.19
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (19 bp):
TTTTCCTTTTTTGTTCTTC
Found at i:22121435 original size:18 final size:17
Alignment explanation
Indices: 22121402--22121440 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
22121392 TTTTATAAAT
22121402 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
22121420 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
22121437 TGTG
1 TGTG
22121441 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:22121572 original size:8 final size:8
Alignment explanation
Indices: 22121559--22121584 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
22121549 CACTAGAGAT
22121559 CAGTGTTA
1 CAGTGTTA
22121567 CAGTGTTA
1 CAGTGTTA
22121575 CAGTGTTA
1 CAGTGTTA
22121583 CA
1 CA
22121585 ATGAGTCCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (8 bp):
CAGTGTTA
Found at i:22121700 original size:23 final size:23
Alignment explanation
Indices: 22121674--22121795 Score: 199
Period size: 23 Copynumber: 5.3 Consensus size: 23
22121664 AGTGTTATTG
22121674 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
22121697 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
22121720 ATCAGTGGTAGCTTCAGCTGCAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22121743 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
22121766 TTTAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
22121789 ATCAGTG
1 ATCAGTG
22121796 TGGCACTTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 91 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:22121967 original size:38 final size:37
Alignment explanation
Indices: 22121925--22121997 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
22121915 ATGCGTGGAA
* *
22121925 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
22121963 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
22121998 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:22132048 original size:23 final size:24
Alignment explanation
Indices: 22132011--22132057 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
22132001 GAATATTTTT
22132011 AATCTTAGTAGATTTGATTCTGTA
1 AATCTTAGTAGATTTGATTCTGTA
*
22132035 AATCTTA-TAGATTTGATTTTGTA
1 AATCTTAGTAGATTTGATTCTGTA
22132058 GATTGCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.49
Consensus pattern (24 bp):
AATCTTAGTAGATTTGATTCTGTA
Found at i:22142079 original size:75 final size:74
Alignment explanation
Indices: 22141956--22142093 Score: 204
Period size: 75 Copynumber: 1.9 Consensus size: 74
22141946 AGAAAAAAAA
* * *
22141956 AGAGATTATCAATTATGTTTTACTTTCTCTTCCCTATTAAAACTTGTTATCCATATGAATCATAC
1 AGAGATTATCAATTATGTTTTACTTTCTCTTCCCTATCAAAACGTGTTATCCAAATGAATCATAC
22142021 AAAGTAGGG
66 AAAGTAGGG
* * * *
22142030 AGAGATTATTAATTCTTTTCTTACTTTCTCTTCCCTATCCAAACGTGTTATCCAAATGAATCAT
1 AGAGATTATCAATTATGTT-TTACTTTCTCTTCCCTATCAAAACGTGTTATCCAAATGAATCAT
22142094 TCCCTATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
74 16 0.29
75 40 0.71
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (74 bp):
AGAGATTATCAATTATGTTTTACTTTCTCTTCCCTATCAAAACGTGTTATCCAAATGAATCATAC
AAAGTAGGG
Found at i:22142542 original size:6 final size:6
Alignment explanation
Indices: 22142533--22142561 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
22142523 ATAATAAAAA
22142533 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
22142562 CAATTAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:22144663 original size:24 final size:25
Alignment explanation
Indices: 22144631--22144685 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
22144621 CACTATTTTA
* * *
22144631 AATATAAAATATTCATT-TTTATAT
1 AATAAAAAATATACATTAATTATAT
22144655 AATAAAAAATATACATTAATTATAT
1 AATAAAAAATATACATTAATTATAT
*
22144680 ATTAAA
1 AATAAA
22144686 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 15 0.58
25 11 0.42
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
AATAAAAAATATACATTAATTATAT
Found at i:22145479 original size:20 final size:20
Alignment explanation
Indices: 22145451--22145491 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22145441 CTTAATTATC
* *
22145451 AAATTTAAACATGAAAATGA
1 AAATATAAACATCAAAATGA
*
22145471 AAATATAAATATCAAAATGA
1 AAATATAAACATCAAAATGA
22145491 A
1 A
22145492 TTTAATTTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.24
Consensus pattern (20 bp):
AAATATAAACATCAAAATGA
Found at i:22168344 original size:41 final size:41
Alignment explanation
Indices: 22168225--22168382 Score: 156
Period size: 41 Copynumber: 3.9 Consensus size: 41
22168215 GGAGTGAAAC
** * * * *
22168225 AACAATTTAAGCTTGTATTTAGGAGCCTCATTTTTTGGATA
1 AACAATTTAAGCTCATGTTTAGGAGCATCATATTTTGGATG
* ** * *
22168266 AACAATTTAAGTTTGTGCTTAAGAG-ATCATATTTTGGATG
1 AACAATTTAAGCTCATGTTTAGGAGCATCATATTTTGGATG
*
22168306 ACCAATTTAAGCTCATGTTTAGGAGCATCATATTTTGGATG
1 AACAATTTAAGCTCATGTTTAGGAGCATCATATTTTGGATG
* * * * *
22168347 AATAGTTTAAGTTCATGTTAAGGAGCATCATTTTTT
1 AACAATTTAAGCTCATGTTTAGGAGCATCATATTTT
22168383 TTTCTTTGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 31 0.32
41 66 0.68
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (41 bp):
AACAATTTAAGCTCATGTTTAGGAGCATCATATTTTGGATG
Found at i:22179567 original size:21 final size:21
Alignment explanation
Indices: 22179541--22179596 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
22179531 AACAGCGGTG
*
22179541 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
22179562 GCGGTGAGATTGGATATTGTA
1 GCGGTGAGATTAGATACTGTA
22179583 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
22179597 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:22180027 original size:17 final size:17
Alignment explanation
Indices: 22180007--22180051 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
22179997 TATTACTAGA
22180007 AATTTTTAATTATAAAT
1 AATTTTTAATTATAAAT
** *
22180024 AATTTAAAATAATAAAT
1 AATTTTTAATTATAAAT
22180041 AATTTTTAATT
1 AATTTTTAATT
22180052 TTTAATTATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTTTTAATTATAAAT
Found at i:22197051 original size:25 final size:24
Alignment explanation
Indices: 22197023--22197082 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
22197013 TTCTTTTCTT
* *
22197023 TTTTCTTTTTCATTTTTAGATTAGG
1 TTTTCTTTTTC-TTTTTAGAATAGA
*
22197048 TTTTCCCTTTTCTTTTTAGAATAGA
1 TTTT-CTTTTTCTTTTTAGAATAGA
*
22197073 TTTTATTTTT
1 TTTTCTTTTT
22197083 GTTGCTTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 4 0.14
25 19 0.66
26 6 0.21
ACGTcount: A:0.17, C:0.10, G:0.08, T:0.65
Consensus pattern (24 bp):
TTTTCTTTTTCTTTTTAGAATAGA
Found at i:22206031 original size:29 final size:31
Alignment explanation
Indices: 22205991--22206053 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
22205981 CCTTTTAATA
*
22205991 TTTTTTAAAAA-TCTTATTAAAT-TCTAAAT
1 TTTTTTAAAAATTCTAATTAAATCTCTAAAT
* *
22206020 TTTTTTGAAAATTCTAATTAAATCTTTAAAT
1 TTTTTTAAAAATTCTAATTAAATCTCTAAAT
22206051 TTT
1 TTT
22206054 CTAAAAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 10 0.34
30 10 0.34
31 9 0.31
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (31 bp):
TTTTTTAAAAATTCTAATTAAATCTCTAAAT
Found at i:22206040 original size:30 final size:30
Alignment explanation
Indices: 22205991--22206053 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
22205981 CCTTTTAATA
*
22205991 TTTTTTAAAAATCTTATTAAAT-TCTAAAT
1 TTTTTTAAAAATCTAATTAAATCTCTAAAT
* *
22206020 TTTTTTGAAAATTCTAATTAAATCTTTAAAT
1 TTTTTT-AAAAATCTAATTAAATCTCTAAAT
22206051 TTT
1 TTT
22206054 CTAAAAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 6 0.21
30 14 0.48
31 9 0.31
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (30 bp):
TTTTTTAAAAATCTAATTAAATCTCTAAAT
Found at i:22206059 original size:29 final size:28
Alignment explanation
Indices: 22205983--22206059 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
22205973 TCAATAATCC
*
22205983 TTTTAATATTTTTTAAAAATCTTATTAAA
1 TTTTAA-ATTTTTTAAAAATCTAATTAAA
* *
22206012 TTCTAAATTTTTTTGAAAATTCTAATTAAA
1 TTTTAAA-TTTTTT-AAAAATCTAATTAAA
*
22206042 TCTTTAAATTTTCTAAAA
1 T-TTTAAATTTTTTAAAA
22206060 GTTTTGATTG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 1 0.03
29 15 0.38
30 19 0.47
31 5 0.12
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.52
Consensus pattern (28 bp):
TTTTAAATTTTTTAAAAATCTAATTAAA
Found at i:22207064 original size:14 final size:14
Alignment explanation
Indices: 22207034--22207076 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
22207024 GCTTCTTCTG
**
22207034 TTTTCTTTTTCCTT
1 TTTTCTTTTTCGGT
22207048 TTTTCTTTTTCGG-
1 TTTTCTTTTTCGGT
22207061 TTTTC-TTTTCGGT
1 TTTTCTTTTTCGGT
22207074 TTT
1 TTT
22207077 GGTTTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 7 0.27
13 8 0.31
14 11 0.42
ACGTcount: A:0.00, C:0.16, G:0.09, T:0.74
Consensus pattern (14 bp):
TTTTCTTTTTCGGT
Found at i:22207071 original size:12 final size:13
Alignment explanation
Indices: 22207033--22207076 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
22207023 TGCTTCTTCT
*
22207033 GTTTTCTTTTTCCT
1 GTTTTCTTTTT-CG
*
22207047 TTTTTCTTTTTCG
1 GTTTTCTTTTTCG
22207060 GTTTTC-TTTTCG
1 GTTTTCTTTTTCG
22207072 GTTTT
1 GTTTT
22207077 GGTTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 6 0.22
14 10 0.37
ACGTcount: A:0.00, C:0.16, G:0.11, T:0.73
Consensus pattern (13 bp):
GTTTTCTTTTTCG
Found at i:22207840 original size:26 final size:25
Alignment explanation
Indices: 22207804--22207865 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
22207794 TTTATATACT
* *
22207804 ATTTAGTTTAAGTCA-TTTATTTTA
1 ATTTATTTTAAATCAGTTTATTTTA
*
22207828 TATGTTATTTTAAAATTAGTTTATTTTA
1 -AT-TTATTTT-AAATCAGTTTATTTTA
22207856 ATTTATTTTA
1 ATTTATTTTA
22207866 TTTAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 3 0.10
26 13 0.42
27 6 0.19
28 9 0.29
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (25 bp):
ATTTATTTTAAATCAGTTTATTTTA
Found at i:22207867 original size:15 final size:16
Alignment explanation
Indices: 22207832--22207874 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
22207822 ATTTTATATG
22207832 TTATTTTAAAATTAGT
1 TTATTTTAAAATTAGT
* *
22207848 TTATTTT-AATTTATT
1 TTATTTTAAAATTAGT
22207863 TTA-TTTAAAATT
1 TTATTTTAAAATT
22207875 TCCCGTGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 3 0.13
15 13 0.57
16 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TTATTTTAAAATTAGT
Found at i:22214710 original size:27 final size:27
Alignment explanation
Indices: 22214686--22214751 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
22214676 GGGGGGTGTT
*
22214686 GCCTGTGGCAGTGGCACCTTTGGTGCC
1 GCCTGTGGCAGTGGCACCATTGGTGCC
* * * *
22214713 GTCTCTGCCACTGGCACCATTGGTGCC
1 GCCTGTGGCAGTGGCACCATTGGTGCC
22214740 GCCTGTGGCAGT
1 GCCTGTGGCAGT
22214752 TCTTCCACTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.09, C:0.32, G:0.33, T:0.26
Consensus pattern (27 bp):
GCCTGTGGCAGTGGCACCATTGGTGCC
Found at i:22216863 original size:22 final size:22
Alignment explanation
Indices: 22216820--22216879 Score: 90
Period size: 22 Copynumber: 2.8 Consensus size: 22
22216810 GTACGGGATC
22216820 GCACTTCGGTGCCTC--TATTT
1 GCACTTCGGTGCCTCTGTATTT
22216840 GCACTTCGGTGCCTCTGTATTT
1 GCACTTCGGTGCCTCTGTATTT
22216862 GCACTAT-GGTGCCTCTGT
1 GCACT-TCGGTGCCTCTGT
22216880 TAGCATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.41
22 21 0.57
23 1 0.03
ACGTcount: A:0.10, C:0.28, G:0.23, T:0.38
Consensus pattern (22 bp):
GCACTTCGGTGCCTCTGTATTT
Found at i:22224250 original size:14 final size:15
Alignment explanation
Indices: 22224221--22224253 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
22224211 TTTCCTTTTA
*
22224221 TTCTCTTTTTTTCTT
1 TTCTCTTTTCTTCTT
22224236 TTCTC-TTTCTTCTT
1 TTCTCTTTTCTTCTT
22224250 TTCT
1 TTCT
22224254 TGCCTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTCTCTTTTCTTCTT
Found at i:22224884 original size:62 final size:62
Alignment explanation
Indices: 22224818--22224961 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 62
22224808 GGACACAAAT
* * * *
22224818 GTGTGTCCAAGCCGTGTAACTTATTGTTTGTA-ATTTTA-GTCACACGAGCTAGAGATACGGGC
1 GTGTGTCCAGGCCGTGTAACTCACTGTTT-TAGA-TTTAGGTCACACGAGCTAGAGACACGGGC
* * * * *
22224880 GTGTGTCCAGGCCGTATAACTCACTGTTTTAGATTTAGGGTCATACGGGTTAGGGACACGGGC
1 GTGTGTCCAGGCCGTGTAACTCACTGTTTTAGATTTA-GGTCACACGAGCTAGAGACACGGGC
22224943 GTGTGTCCAGGCCGTGTAA
1 GTGTGTCCAGGCCGTGTAA
22224962 GGGCTTGTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
61 6 0.09
62 26 0.38
63 37 0.54
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (62 bp):
GTGTGTCCAGGCCGTGTAACTCACTGTTTTAGATTTAGGTCACACGAGCTAGAGACACGGGC
Found at i:22232343 original size:43 final size:44
Alignment explanation
Indices: 22232286--22232368 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
22232276 TCTCAATTCA
* * *
22232286 TCATTTCATAATTCATTTCTCATCTTTTCCATTTCAATATTTTC
1 TCATCTCATAATTCATTTCTCATCTTTGCAATTTCAATATTTTC
22232330 TCATCTCAT-ATTCATTTCTCATCTTTGCAATTTCAATAT
1 TCATCTCATAATTCATTTCTCATCTTTGCAATTTCAATAT
22232369 CAGTCACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 28 0.78
44 8 0.22
ACGTcount: A:0.24, C:0.23, G:0.01, T:0.52
Consensus pattern (44 bp):
TCATCTCATAATTCATTTCTCATCTTTGCAATTTCAATATTTTC
Found at i:22243020 original size:13 final size:15
Alignment explanation
Indices: 22242990--22243021 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22242980 CCATTTCATG
22242990 CATTTCATCAATAAT
1 CATTTCATCAATAAT
22243005 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
22243018 CATT
1 CATT
22243022 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:22243298 original size:20 final size:20
Alignment explanation
Indices: 22243273--22243334 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
22243263 TCAATTAAAA
22243273 TTCAAATATTATTTCACTAT
1 TTCAAATATTATTTCACTAT
*
22243293 TTCAAATCA--CTTT-A--A-
1 TTCAAAT-ATTATTTCACTAT
*
22243308 TTCAAGTATTATTTCACTAT
1 TTCAAATATTATTTCACTAT
22243328 TTCAAAT
1 TTCAAAT
22243335 CACTTTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 14
0.63 0.08 0.29
Matches are distributed among these distances:
14 1 0.03
15 6 0.19
16 4 0.13
17 1 0.03
18 1 0.03
19 4 0.13
20 13 0.42
21 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCAAATATTATTTCACTAT
Found at i:22243310 original size:35 final size:35
Alignment explanation
Indices: 22243271--22243341 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
22243261 ATTCAATTAA
22243271 AATTCAAATATTATTTCACTATTTCAAATCACTTT
1 AATTCAAATATTATTTCACTATTTCAAATCACTTT
*
22243306 AATTCAAGTATTATTTCACTATTTCAAATCACTTT
1 AATTCAAATATTATTTCACTATTTCAAATCACTTT
22243341 A
1 A
22243342 TTTTCACTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.01, T:0.45
Consensus pattern (35 bp):
AATTCAAATATTATTTCACTATTTCAAATCACTTT
Found at i:22243965 original size:18 final size:18
Alignment explanation
Indices: 22243897--22243965 Score: 56
Period size: 18 Copynumber: 4.0 Consensus size: 18
22243887 TTAGTAGGGT
*
22243897 ATTCAAATT-ATTTTTCTA
1 ATTCAAATTCACTTTTC-A
* *
22243915 TTTCAAATTCAC-TTTCT
1 ATTCAAATTCACTTTTCA
**
22243932 ATTC-AA-TCACAATTCA
1 ATTCAAATTCACTTTTCA
22243948 ATTCAAATTCACTTTTCA
1 ATTCAAATTCACTTTTCA
22243966 CTTTATAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
15 4 0.10
16 9 0.23
17 5 0.13
18 20 0.51
19 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTCAAATTCACTTTTCA
Found at i:22244006 original size:41 final size:40
Alignment explanation
Indices: 22243922--22243999 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 40
22243912 CTATTTCAAA
* * * *
22243922 TTCACTTTCTATTCAATCACAATTCAATTCAAATTCACTT
1 TTCACTTTATAATCAATCACAATTCAATACAAATACACTT
*
22243962 TTCACTTTATAATCAATACACAATTCAATACCAATACA
1 TTCACTTTATAATCAAT-CACAATTCAATACAAATACA
22244000 TATTTCAGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 15 0.47
41 17 0.53
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.37
Consensus pattern (40 bp):
TTCACTTTATAATCAATCACAATTCAATACAAATACACTT
Found at i:22244525 original size:25 final size:26
Alignment explanation
Indices: 22244473--22244525 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22244463 GGGTGCGATA
22244473 TTAGCTACGAAAAATTAGGATAATTT
1 TTAGCTACGAAAAATTAGGATAATTT
22244499 TTAGCTACGAAAAATTAGGATAATTT
1 TTAGCTACGAAAAATTAGGATAATTT
22244525 T
1 T
22244526 CATAATCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (26 bp):
TTAGCTACGAAAAATTAGGATAATTT
Found at i:22244589 original size:11 final size:11
Alignment explanation
Indices: 22244573--22244597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22244563 TTAAATTTTC
22244573 CTATTCAATTT
1 CTATTCAATTT
22244584 CTATTCAATTT
1 CTATTCAATTT
22244595 CTA
1 CTA
22244598 CCGTAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (11 bp):
CTATTCAATTT
Found at i:22246995 original size:91 final size:91
Alignment explanation
Indices: 22246850--22247034 Score: 343
Period size: 91 Copynumber: 2.0 Consensus size: 91
22246840 AATTGGCCAA
*
22246850 AATCAAGCCATTTATTTCACCCATTCAAGCATGAACCTACAAGAAACTTGCACATATAACCAAGA
1 AATCAAGCCATTTATTTCACCCATTCAAGCATGAACCTACAAGAAACTTACACATATAACCAAGA
22246915 CCTTAAAATATTCCCAAATTATGTAT
66 CCTTAAAATATTCCCAAATTATGTAT
* *
22246941 AATCAAGCCATTTCTTTCACCCATTCAAGCATGAACTTACAAGAAACTTACACATATAACCAAGA
1 AATCAAGCCATTTATTTCACCCATTCAAGCATGAACCTACAAGAAACTTACACATATAACCAAGA
22247006 CCTTAAAATATTCCCAAATTATGTAT
66 CCTTAAAATATTCCCAAATTATGTAT
22247032 AAT
1 AAT
22247035 AAGACCAATT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (91 bp):
AATCAAGCCATTTATTTCACCCATTCAAGCATGAACCTACAAGAAACTTACACATATAACCAAGA
CCTTAAAATATTCCCAAATTATGTAT
Found at i:22261892 original size:22 final size:22
Alignment explanation
Indices: 22261864--22261908 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22261854 GGACTGAGCA
* *
22261864 ATTAGGCTAAAGAATTCCAAAG
1 ATTAGGCCAAAGAAATCCAAAG
22261886 ATTAGGCCAAAGAAATCCAAAG
1 ATTAGGCCAAAGAAATCCAAAG
22261908 A
1 A
22261909 GAAGCACACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (22 bp):
ATTAGGCCAAAGAAATCCAAAG
Found at i:22264278 original size:16 final size:15
Alignment explanation
Indices: 22264253--22264282 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22264243 ATTAAATTAA
22264253 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
22264268 TTAACCTAAATGCAA
1 TTAA-CTAAATGCAA
22264283 ATGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:22267408 original size:50 final size:50
Alignment explanation
Indices: 22267340--22267529 Score: 191
Period size: 50 Copynumber: 3.7 Consensus size: 50
22267330 TTTTTTGTAC
* **
22267340 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
* ** * *
22267390 TGCCCATGCCATATCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
* * * * *
22267440 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAGTCTCAATGA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATA---TC---GG
* *
22267496 TGCCAATGCCATGTCCCAAACATGGTCTTACATG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATG
22267530 GGATCTCTTT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 81 0.70
53 2 0.02
56 32 0.28
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
Found at i:22275034 original size:52 final size:50
Alignment explanation
Indices: 22274809--22275046 Score: 181
Period size: 48 Copynumber: 4.9 Consensus size: 50
22274799 TGATAATAAC
* * * *
22274809 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGT--TTTTG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATCTCG
* * * ** * *
22274855 TACTGCCAATGCCATATCCCAGATATGGTCTTACAT-GGAGTTCTCATAT-G
1 -A-TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATCTCG
* * * * *
22274905 GTGCCCATG-CAT-TCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATCTCG
* *
22274952 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTAATCTCAATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATCTC---G
* *
22275005 ATGCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22275047 TTACCCAAAT
Statistics
Matches: 157, Mismatches: 21, Indels: 21
0.79 0.11 0.11
Matches are distributed among these distances:
46 27 0.17
47 15 0.10
48 40 0.25
49 20 0.13
50 14 0.09
51 2 0.01
52 25 0.16
53 14 0.09
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATCTCG
Found at i:22275426 original size:52 final size:51
Alignment explanation
Indices: 22275347--22275445 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 51
22275337 ATTTAATACT
22275347 CATTCATCAAAAAGTCTTGACTCAATTTTGG-AAAATTATAGTTTTGCCCA
1 CATTCATCAAAAAGTCTTGACTCAATTTTGGAAAAATTATAGTTTTGCCCA
*
22275397 CATTCATCAAAATAGTCCTTGAGTCAATTTTGGAAAAATTATAGTTTTG
1 CATTCATCAAAA-AGT-CTTGACTCAATTTTGGAAAAATTATAGTTTTG
22275446 ACCCTAAACT
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
50 12 0.27
51 3 0.07
52 15 0.33
53 15 0.33
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (51 bp):
CATTCATCAAAAAGTCTTGACTCAATTTTGGAAAAATTATAGTTTTGCCCA
Found at i:22277483 original size:138 final size:138
Alignment explanation
Indices: 22277300--22277580 Score: 427
Period size: 138 Copynumber: 2.0 Consensus size: 138
22277290 GAGAACATAT
* * * *
22277300 ATATAATTAATATATGAATTTGATTCATATAATATATTAATTGTATATGTTTTACCAAATTTAGT
1 ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAGT
* * *
22277365 AATATAAATAATTATATTAATTAATTTCGATCCAAATATAAAAGACATGAAAATTAACATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAACATTATTT
*
22277430 TGGAAAGA
131 TGAAAAGA
* *
22277438 ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCAAATTTATT
1 ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAGT
* * * * *
22277503 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGATATGGAAATTAATATTATTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAACATTATTT
22277568 TGAAAAGA
131 TGAAAAGA
22277576 ATATA
1 ATATA
22277581 CTTCCTGTTT
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 128 1.00
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (138 bp):
ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAGT
AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAACATTATTT
TGAAAAGA
Found at i:22277720 original size:74 final size:75
Alignment explanation
Indices: 22277599--22277765 Score: 212
Period size: 74 Copynumber: 2.2 Consensus size: 75
22277589 TTTTAACTTT
* * * *
22277599 CTATTAATAAGAGAATAATCTTATATTCTTTTAGAAAATATATAATTCTTTTTTCTAACTTTCCA
1 CTATTAATAAGAGAATAATCCTACATTATTTTAGAAAATATATAATTCATTTTTCTAACTTTCCA
22277664 TTT-CATTCC
66 TTTGCATTCC
* * * *
22277673 CTATTAATAAGGGAATAATCCTACATTATTTTCGAAAGA-ATATAATTCATTTTTCTAATTTTTC
1 CTATTAATAAGAGAATAATCCTACATTATTTTAGAAA-ATATATAATTCATTTTTCTAACTTTCC
* *
22277737 ATTTGCCTTCT
65 ATTTGCATTCC
*
22277748 CTATTAATAAGAGGATAA
1 CTATTAATAAGAGAATAA
22277766 AAGAGGATAA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
74 58 0.73
75 21 0.27
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (75 bp):
CTATTAATAAGAGAATAATCCTACATTATTTTAGAAAATATATAATTCATTTTTCTAACTTTCCA
TTTGCATTCC
Found at i:22280221 original size:20 final size:20
Alignment explanation
Indices: 22280186--22280234 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
22280176 GTCATGGTCT
*
22280186 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
22280205 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
22280225 TTGCTTACTT
1 TTGCTTACTT
22280235 AAATAACTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:22280588 original size:50 final size:50
Alignment explanation
Indices: 22280525--22280631 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
22280515 ACATGAGAGT
* * * *
22280525 TCTCATATCGGTGCCCATGTCATGTCCAAGACATGGTCTTACGGGGGACC
1 TCTCATATAGGTGCCAACGCCATGTCCAAGACATGGTCTTACGGGGGACC
* * * *
22280575 TCTCATCTAGGTGCCAACGCCATGTCCCAGACATGGTCTTATGTGGGACC
1 TCTCATATAGGTGCCAACGCCATGTCCAAGACATGGTCTTACGGGGGACC
*
22280625 TTTCATA
1 TCTCATA
22280632 ACCTCAATAA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TCTCATATAGGTGCCAACGCCATGTCCAAGACATGGTCTTACGGGGGACC
Found at i:22289673 original size:23 final size:20
Alignment explanation
Indices: 22289646--22289688 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
22289636 TAAACATAAG
22289646 CATTTTAGTTAAAGTTTTAGTTA
1 CATTTTAG-T-AAG-TTTAGTTA
22289669 CATTTTAGTAAGTTTAGTTA
1 CATTTTAGTAAGTTTAGTTA
22289689 AGTTTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 1 0.05
23 8 0.40
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (20 bp):
CATTTTAGTAAGTTTAGTTA
Found at i:22299478 original size:50 final size:50
Alignment explanation
Indices: 22299371--22299763 Score: 387
Period size: 50 Copynumber: 7.6 Consensus size: 50
22299361 TGCGAAAGCT
* ** * * *
22299371 ATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTAC--TGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAATGCC
* * * ** * *
22299420 ATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGTCC-ATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAATGCC
** * **
22299470 ATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACACC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
*
22299520 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* *
22299570 ATGTCCTAGACATGGTCTTACATGGGATCTCTCATCTCGGTGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
** *
22299620 ATGTCCTTGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAATGCC
*
22299676 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAATGCC
** *
22299732 ATGTCCCAGACATATTCTTACATGGGATCTCT
1 ATGTCCCAGACATGGTCTTACATGGGACCTCT
22299764 TTACCCAAAT
Statistics
Matches: 298, Mismatches: 36, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
49 30 0.10
50 167 0.56
51 2 0.01
53 5 0.02
56 94 0.32
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
Found at i:22299671 original size:56 final size:56
Alignment explanation
Indices: 22299610--22299763 Score: 263
Period size: 56 Copynumber: 2.8 Consensus size: 56
22299600 CTCATCTCGG
**
22299610 TGCCAATGCCATGTCCTTGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
22299666 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
** *
22299722 TGCCAATGCCATGTCCCAGACATATTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22299764 TTACCCAAAT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 93 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (56 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
Found at i:22308843 original size:17 final size:17
Alignment explanation
Indices: 22308821--22308853 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22308811 ATAAGTATAC
22308821 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
*
22308838 ATTGTCATTACCTTTT
1 ATTGTCATTACATTTT
22308854 AGTGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:22311690 original size:20 final size:20
Alignment explanation
Indices: 22311665--22311704 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22311655 CGGGCCTAAA
*
22311665 TCAGAAATTTA-AAGAATTTT
1 TCAGAAACTTATAA-AATTTT
22311685 TCAGAAACTTATAAAATTTT
1 TCAGAAACTTATAAAATTTT
22311705 CAAAACTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (20 bp):
TCAGAAACTTATAAAATTTT
Found at i:22332243 original size:20 final size:20
Alignment explanation
Indices: 22332185--22332245 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
22332175 AAATTCATAC
* * *
22332185 GTATCAATACCCTGAATGAA
1 GTATCGATACCTTGACTGAA
* *
22332205 GTATCGATACTTTGGCTGAA
1 GTATCGATACCTTGACTGAA
*
22332225 GTATCGATGCCTTGACTGAA
1 GTATCGATACCTTGACTGAA
22332245 G
1 G
22332246 CATCAATACA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (20 bp):
GTATCGATACCTTGACTGAA
Found at i:22335124 original size:18 final size:18
Alignment explanation
Indices: 22335094--22335141 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
22335084 TTTCTATCAC
*
22335094 TTTT-AATACTTTTTAAT
1 TTTTAAATAATTTTTAAT
*
22335111 TTTTAAATAATTTTTTATT
1 TTTTAAATAA-TTTTTAAT
22335130 TTTTAAA-AATTT
1 TTTTAAATAATTT
22335142 AAAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
19 14 0.52
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTAAATAATTTTTAAT
Found at i:22335127 original size:19 final size:18
Alignment explanation
Indices: 22335103--22335141 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
22335093 CTTTTAATAC
22335103 TTTTTAATTTTTAAATAAT
1 TTTTTAATTTTTAAA-AAT
*
22335122 TTTTTATTTTTTAAAAAT
1 TTTTTAATTTTTAAAAAT
22335140 TT
1 TT
22335142 AAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTAATTTTTAAAAAT
Found at i:22335718 original size:2 final size:2
Alignment explanation
Indices: 22335713--22335746 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
22335703 AAATCTGTTA
**
22335713 AT AT AT AT CC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22335747 GCTATTCGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:22337900 original size:88 final size:89
Alignment explanation
Indices: 22337781--22337962 Score: 267
Period size: 88 Copynumber: 2.1 Consensus size: 89
22337771 CGCTCTTCTT
* * *
22337781 CTTTTTTTGCACTCAATTGAGCACTTAAACTTTCAAAATGTATCAAAAAGGCCCTTAAAC-CTTT
1 CTTTTTTTGCACTCAATTGAGCACTTAAACTTTCAAAATATATCAAAAAGACCCTCAAACTCTTT
*
22337845 TCAAAAAAAGCAATTAAGCCCCTA
66 TCAAAAAAAACAATTAAGCCCCTA
* * * * *
22337869 CTTTTTTTGCATTCAATTGGGTACTTGAACTTTCAAAATATATCAAAAAGACCCTCAAACTTTTT
1 CTTTTTTTGCACTCAATTGAGCACTTAAACTTTCAAAATATATCAAAAAGACCCTCAAACTCTTT
*
22337934 TCAAAAAAAATAATTAAGCCCCTA
66 TCAAAAAAAACAATTAAGCCCCTA
22337958 CTTTT
1 CTTTT
22337963 ATTAAAAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 53 0.64
89 30 0.36
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (89 bp):
CTTTTTTTGCACTCAATTGAGCACTTAAACTTTCAAAATATATCAAAAAGACCCTCAAACTCTTT
TCAAAAAAAACAATTAAGCCCCTA
Found at i:22337989 original size:9 final size:9
Alignment explanation
Indices: 22337977--22338087 Score: 86
Period size: 9 Copynumber: 12.1 Consensus size: 9
22337967 AAAATTAGAA
22337977 AAAATATAT
1 AAAATATAT
22337986 AAAA-ATATT
1 AAAATATA-T
*
22337995 AAAAAATAT
1 AAAATATAT
22338004 AAAA-ATAT
1 AAAATATAT
* *
22338012 AAAAATTTGT
1 -AAAATATAT
*
22338022 AAAATTTTAT
1 AAAA-TATAT
22338032 AAAA-ATCAT
1 AAAATAT-AT
22338041 AAAATATTAT
1 AAAATA-TAT
22338051 AAAATATAT
1 AAAATATAT
*
22338060 AGAAATATAA
1 A-AAATATAT
22338070 AAAAT-TAT
1 AAAATATAT
*
22338078 AAAATTTAT
1 AAAATATAT
22338087 A
1 A
22338088 GTCATTAGAA
Statistics
Matches: 86, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
8 15 0.17
9 40 0.47
10 30 0.35
11 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAATATAT
Found at i:22337990 original size:20 final size:19
Alignment explanation
Indices: 22337965--22338009 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
22337955 CTACTTTTAT
22337965 TAAAAATTAGAAAAAATATA
1 TAAAAATTAGAAAAAA-ATA
**
22337985 TAAAAA-TATTAAAAAATA
1 TAAAAATTAGAAAAAAATA
22338003 TAAAAAT
1 TAAAAAT
22338010 ATAAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 9 0.41
19 7 0.32
20 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
TAAAAATTAGAAAAAAATA
Found at i:22338001 original size:10 final size:9
Alignment explanation
Indices: 22337965--22338081 Score: 69
Period size: 10 Copynumber: 12.6 Consensus size: 9
22337955 CTACTTTTAT
*
22337965 TAAAAATTA
1 TAAAAAATA
*
22337974 GAAAAAATA
1 TAAAAAATA
22337983 TATAAAAATA
1 TA-AAAAATA
22337993 TTAAAAAATA
1 -TAAAAAATA
22338003 T-AAAAATA
1 TAAAAAATA
*
22338011 T-AAAAATT
1 TAAAAAATA
* * *
22338019 TGTAAAATTT
1 T-AAAAAATA
22338029 TATAAAAATCA
1 TA-AAAAAT-A
*
22338040 TAAAATAT-
1 TAAAAAATA
*
22338048 TATAAAATA
1 TAAAAAATA
*
22338057 TATAGAAATA
1 TA-AAAAATA
22338067 TAAAAAATTA
1 TAAAAAA-TA
22338077 TAAAA
1 TAAAA
22338082 TTTATAGTCA
Statistics
Matches: 85, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
8 21 0.25
9 15 0.18
10 45 0.53
11 4 0.05
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.31
Consensus pattern (9 bp):
TAAAAAATA
Found at i:22338015 original size:46 final size:47
Alignment explanation
Indices: 22337965--22338081 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 47
22337955 CTACTTTTAT
22337965 TAAAAATTAGAAAAAATATATAAAAAT-ATTAAAA-AATATAAAA-ATA
1 TAAAAATTAGAAAAAAT-TATAAAAATCA-TAAAATAATATAAAATATA
* ** *
22338011 TAAAAATTTGTAAAATTTTATAAAAATCATAAAATATTATAAAATATA
1 TAAAAATTAG-AAAAAATTATAAAAATCATAAAATAATATAAAATATA
* *
22338059 TAGAAA-TATAAAAAATTATAAAA
1 TAAAAATTAGAAAAAATTATAAAA
22338082 TTTATAGTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
46 35 0.60
47 15 0.26
48 8 0.14
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.31
Consensus pattern (47 bp):
TAAAAATTAGAAAAAATTATAAAAATCATAAAATAATATAAAATATA
Found at i:22338111 original size:56 final size:55
Alignment explanation
Indices: 22337987--22338126 Score: 149
Period size: 56 Copynumber: 2.5 Consensus size: 55
22337977 AAAATATATA
* * *
22337987 AAAATATTAAAAAATATAA-AAATATAAAAATTTGTAAAATTTTATAAAAATCAT
1 AAAATATTAAAAAATATAAGAAATATAAAAAATTATAAAATTTTATAAAAATCAG
* *** *
22338041 AAAATATTATAAAATATATAGAAATATAAAAAATTATAAAA-TTTATAGTCATTAG
1 AAAATATTAAAAAATATA-AGAAATATAAAAAATTATAAAATTTTATAAAAATCAG
* *
22338096 AAAATTATAAAAAAATGTAAAGAAATATAAA
1 AAAA-TATTAAAAAATAT-AAGAAATATAAA
22338127 TTTCATAAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
54 17 0.24
55 14 0.20
56 39 0.55
57 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (55 bp):
AAAATATTAAAAAATATAAGAAATATAAAAAATTATAAAATTTTATAAAAATCAG
Found at i:22338313 original size:10 final size:10
Alignment explanation
Indices: 22338300--22338325 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22338290 TTTTTCTAAT
22338300 TTTTATAAAA
1 TTTTATAAAA
22338310 TTTTATAAAA
1 TTTTATAAAA
22338320 TTTTAT
1 TTTTAT
22338326 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:22338374 original size:45 final size:44
Alignment explanation
Indices: 22338317--22338454 Score: 156
Period size: 47 Copynumber: 3.1 Consensus size: 44
22338307 AAATTTTATA
22338317 AAATTTT-ATTTTTTATTTTTATAAAAAAATTCTAATTTTTAAT
1 AAATTTTAATTTTTTATTTTTATAAAAAAATTCTAATTTTTAAT
** **
22338360 AAATTTTAAATTTTTTATATTTT-TATTAAAATT-TAATAATTTTTCT
1 AAATTTT-AATTTTTTAT-TTTTATAAAAAAATTCTAAT--TTTTAAT
*
22338406 AAAATTTATTATTTTTTATTTTTATAAAAAAATTCTAATTTTTAAT
1 -AAATTT-TAATTTTTTATTTTTATAAAAAAATTCTAATTTTTAAT
22338452 AAA
1 AAA
22338455 AGTAGGGGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
43 7 0.09
44 4 0.05
45 20 0.26
46 18 0.23
47 23 0.30
48 5 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (44 bp):
AAATTTTAATTTTTTATTTTTATAAAAAAATTCTAATTTTTAAT
Found at i:22338388 original size:20 final size:20
Alignment explanation
Indices: 22338365--22338425 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
22338355 TTAATAAATT
22338365 TTAAATTTTTTATATTTTTA
1 TTAAATTTTTTATATTTTTA
* * *
22338385 TTAAA-ATTTAATAATTTTTC
1 TTAAATTTTTTAT-ATTTTTA
* *
22338405 TAAAATTTATTAT-TTTTTA
1 TTAAATTTTTTATATTTTTA
22338424 TT
1 TT
22338426 TTTATAAAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 5
0.68 0.20 0.11
Matches are distributed among these distances:
19 11 0.37
20 15 0.50
21 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTAAATTTTTTATATTTTTA
Found at i:22338400 original size:47 final size:46
Alignment explanation
Indices: 22338310--22338455 Score: 151
Period size: 46 Copynumber: 3.2 Consensus size: 46
22338300 TTTTATAAAA
* *
22338310 TTTT-ATAAAA-TT-TTATTTTTTATTTTTATAAAAAAATTCTAAT
1 TTTTAATAAAATTTATTATTTTATATTTTTATAAAAAAATTATAAT
* * *
22338353 TTTTAATAAATTTTAAATT-TTTTATATTTTTAT-TAAAATTTAATAAT
1 TTTTAATAAAATTT--ATTATTTTATATTTTTATAAAAAAATT-ATAAT
* * *
22338400 TTTT-CTAAAATTTATTATTTTTTATTTTTATAAAAAAATTCTAAT
1 TTTTAATAAAATTTATTATTTTATATTTTTATAAAAAAATTATAAT
22338445 TTTTAATAAAA
1 TTTTAATAAAA
22338456 GTAGGGGCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
43 4 0.05
44 8 0.10
45 23 0.28
46 24 0.29
47 21 0.26
48 2 0.02
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (46 bp):
TTTTAATAAAATTTATTATTTTATATTTTTATAAAAAAATTATAAT
Found at i:22338421 original size:18 final size:19
Alignment explanation
Indices: 22338373--22338421 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
22338363 TTTTAAATTT
*
22338373 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTACTAAAA
*
22338391 TTTAATAATTTTT-CTAAAA
1 TTT-ATTATTTTTACTAAAA
22338410 TTTATTATTTTT
1 TTTATTATTTTT
22338422 TATTTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.42
19 9 0.35
20 6 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTATTATTTTTACTAAAA
Found at i:22338421 original size:19 final size:17
Alignment explanation
Indices: 22338373--22338422 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
22338363 TTTTAAATTT
22338373 TTTATATTTTTATTAAAA
1 TTTATATTTTT-TTAAAA
*
22338391 TTTAATAATTTTTCTAAAA
1 TTT-AT-ATTTTTTTAAAA
22338410 TTTATTATTTTTT
1 TTTA-TATTTTTT
22338423 ATTTTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTATATTTTTTTAAAA
Found at i:22342625 original size:3 final size:3
Alignment explanation
Indices: 22342611--22342659 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
22342601 ACAAAATTTA
*
22342611 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22342659 A
1 A
22342660 CTATCAACTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22344005 original size:187 final size:184
Alignment explanation
Indices: 22343746--22344290 Score: 878
Period size: 187 Copynumber: 2.9 Consensus size: 184
22343736 AAAAAGGCGG
** *
22343746 AACCAAATTAGTGAAAAAAATTAAGTAACAATAGAATATTTAAGTAGAGCAAATCTGCAATTAGA
1 AACCAAATTAGTGAAAAAAA-CGAGT-A-AATAGAATATTTAAGTAGAGCAAATCTGCAATGAGA
*
22343811 ACAGAGATCTTCAACATCAACTAAACAGCTT-ATGCATTTTCTCTTCACATTGATCTACTCTTTC
63 ACAGAGATCTTCAACATCAACTAAACAGCTTAATGCA-TTTCTCTTCACATTGATCTACTCTTAC
22343875 CTAAAATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAAACAAACAATAAACACT
127 CTAAAATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAAACAAACAATAAACACT
* * *
22343933 AACCAAATTAGTGAAAAGAAACGAGTAAGACTAGAAGATTTAAGTAGAGCACATCTGCAACGAGA
1 AACCAAATTAGTGAAAA-AAACGAGTAA-A-TAGAATATTTAAGTAGAGCAAATCTGCAATGAGA
* *
22343998 ACAGAGATCTTCAACATCAACTAAACAGCTTAACGCATTTCTCTTCACATTGATCTACTATTACC
63 ACAGAGATCTTCAACATCAACTAAACAGCTTAATGCATTTCTCTTCACATTGATCTACTCTTACC
* *
22344063 TAAAATCAAACATGAAATTCCCACTCTTTCTCAGGAAACAAACAAACACTAAACACT
128 TAAAATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAAACAAACAATAAACACT
* *
22344120 AACCAAAGTAGTGAAAAAAACGAGT-AATAGATTATTTAAGTAGAGCAAATCTGCAATGAGAACA
1 AACCAAATTAGTGAAAAAAACGAGTAAATAGAATATTTAAGTAGAGCAAATCTGCAATGAGAACA
*
22344184 GAGATCTTCAACATCAACTAAGCAGCTTAATGCATTTCTCTTCACATTGATCTACTCTTACCTAA
66 GAGATCTTCAACATCAACTAAACAGCTTAATGCATTTCTCTTCACATTGATCTACTCTTACCTAA
*
22344249 AATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAGACAA
131 AATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAAACAA
22344291 GCAACAATTT
Statistics
Matches: 333, Mismatches: 21, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
183 135 0.41
184 1 0.00
185 2 0.01
186 10 0.03
187 178 0.53
188 7 0.02
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (184 bp):
AACCAAATTAGTGAAAAAAACGAGTAAATAGAATATTTAAGTAGAGCAAATCTGCAATGAGAACA
GAGATCTTCAACATCAACTAAACAGCTTAATGCATTTCTCTTCACATTGATCTACTCTTACCTAA
AATCAAACATGAAATTCTCACTCTTTCTCAGGAAACAAACAAACAATAAACACT
Found at i:22351512 original size:50 final size:49
Alignment explanation
Indices: 22351442--22351578 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 49
22351432 GGTAAAGAGG
* *
22351442 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA--AC
* * * *
22351494 TCCCA-TAAGACCATGTCTGAGACATGGCATGGGTACCGATATGAGAAC
1 TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* *
22351542 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCA
22351579 GTACAGAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 6 0.08
50 61 0.85
52 5 0.07
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (49 bp):
TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:22353914 original size:25 final size:25
Alignment explanation
Indices: 22353865--22353914 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
22353855 TTCATACTAT
* *
22353865 TTTTTGAAATTTTTTATAATTTTTA
1 TTTTTAAAATTTTTTATAATATTTA
22353890 TTTTTAAAATATTTTTATAA-ATTTA
1 TTTTTAAAAT-TTTTTATAATATTTA
22353915 ATATTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (25 bp):
TTTTTAAAATTTTTTATAATATTTA
Found at i:22354955 original size:30 final size:30
Alignment explanation
Indices: 22354921--22354980 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22354911 ACTTAACAAG
*
22354921 TAAATGTCTCTAAAATAATAACAAAATTAA
1 TAAATGCCTCTAAAATAATAACAAAATTAA
* *
22354951 TAAATGCCTTTAAAATAATAATAAAATTAA
1 TAAATGCCTCTAAAATAATAACAAAATTAA
22354981 CAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (30 bp):
TAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:22354990 original size:17 final size:17
Alignment explanation
Indices: 22354960--22354992 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22354950 ATAAATGCCT
22354960 TTAAAATAATAATAAAA
1 TTAAAATAATAATAAAA
22354977 TTAACAATAA-AATAAA
1 TTAA-AATAATAATAAA
22354993 TTTTATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAAATAATAATAAAA
Found at i:22356494 original size:25 final size:23
Alignment explanation
Indices: 22356447--22356494 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
22356437 ATACTTTTAC
*
22356447 ATATTCATATTTTTTATTTTTTT
1 ATATTCATATTTTTTATTATTTT
22356470 ATATTCATATTTTTTCAATTATTTT
1 ATATTCATATTTTTT--ATTATTTT
22356495 TAACCTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.68
25 7 0.32
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (23 bp):
ATATTCATATTTTTTATTATTTT
Found at i:22359199 original size:21 final size:21
Alignment explanation
Indices: 22359173--22359216 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
22359163 TTGACCAATC
*
22359173 AAGGAGACAAGACATGAAGAG
1 AAGGAGACAAAACATGAAGAG
22359194 AAGGAGACAAAACATGAAGAG
1 AAGGAGACAAAACATGAAGAG
22359215 AA
1 AA
22359217 TGTTTGCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.09, G:0.30, T:0.05
Consensus pattern (21 bp):
AAGGAGACAAAACATGAAGAG
Found at i:22369448 original size:25 final size:24
Alignment explanation
Indices: 22369398--22369448 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
22369388 GGGTATCAAC
*
22369398 AAAAAAAATATCAAATTAAAATAT
1 AAAAAAAATATCAAATTAAAACAT
* **
22369422 AAAAATAAATATTAAATTTTAACAT
1 AAAAA-AAATATCAAATTAAAACAT
22369447 AA
1 AA
22369449 TTCACTAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAAAAAATATCAAATTAAAACAT
Found at i:22370466 original size:16 final size:17
Alignment explanation
Indices: 22370445--22370477 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22370435 GTAAAAAACA
*
22370445 TTCAAAT-TTTCAAATT
1 TTCAAATATCTCAAATT
22370461 TTCAAATATCTCAAATT
1 TTCAAATATCTCAAATT
22370478 CAAGTCAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (17 bp):
TTCAAATATCTCAAATT
Found at i:22377397 original size:3 final size:3
Alignment explanation
Indices: 22377389--22377422 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
22377379 GGCCCCGCCA
22377389 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
22377423 TCTCTACTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Done.