Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 79 of 207
Found at i:22979429 original size:29 final size:29
Alignment explanation
Indices: 22979392--22979509 Score: 120
Period size: 29 Copynumber: 4.2 Consensus size: 29
22979382 CCATGAGGAT
22979392 TATCTGATATGTGGAAAGTCTGCC-AGAAC
1 TATCTGATATGTGGAAAGTCTGCCAAG-AC
22979421 TATCTGATATGTGGAAAGT-TCGCCAAGAC
1 TATCTGATATGTGGAAAGTCT-GCCAAGAC
* *** *
22979450 TATCT--TATGTGG-AAGTATATGAGGAC
1 TATCTGATATGTGGAAAGTCTGCCAAGAC
* *
22979476 TATATGATATGTGGAAAGTCCGCCAAGAC
1 TATCTGATATGTGGAAAGTCTGCCAAGAC
22979505 TATCT
1 TATCT
22979510 TAATATGGGA
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
26 12 0.17
27 8 0.11
28 8 0.11
29 41 0.58
30 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (29 bp):
TATCTGATATGTGGAAAGTCTGCCAAGAC
Found at i:22979486 original size:84 final size:84
Alignment explanation
Indices: 22979345--22979509 Score: 233
Period size: 84 Copynumber: 2.0 Consensus size: 84
22979335 AACACCGTTA
* * *
22979345 ATGTGGAAAGTCCACCAAGACTATCTTATGTAGAAATCCATGAGGATTATCTGATATGTGGAAAG
1 ATGTGGAAAGTCCACCAAGACTATCTTATGTAGAAATACATGAGGACTATATGATATGTGGAAAG
*
22979410 TCTGCC-AGAACTATCTGAT
66 TCCGCCAAG-ACTATCTGAT
* * * * *
22979429 ATGTGGAAAGTTCGCCAAGACTATCTTATGTGGAAGTATATGAGGACTATATGATATGTGGAAAG
1 ATGTGGAAAGTCCACCAAGACTATCTTATGTAGAAATACATGAGGACTATATGATATGTGGAAAG
22979494 TCCGCCAAGACTATCT
66 TCCGCCAAGACTATCT
22979510 TAATATGGGA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 69 0.97
85 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (84 bp):
ATGTGGAAAGTCCACCAAGACTATCTTATGTAGAAATACATGAGGACTATATGATATGTGGAAAG
TCCGCCAAGACTATCTGAT
Found at i:22984763 original size:22 final size:22
Alignment explanation
Indices: 22984738--22984790 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
22984728 AAGGCGATGA
*
22984738 TGGCATGTTCTATTAGCTTTTG
1 TGGCATATTCTATTAGCTTTTG
* *
22984760 TGGCATATTCTGTTAGTTTTTG
1 TGGCATATTCTATTAGCTTTTG
*
22984782 TGGCGTATT
1 TGGCATATT
22984791 TCATATGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.13, C:0.11, G:0.25, T:0.51
Consensus pattern (22 bp):
TGGCATATTCTATTAGCTTTTG
Found at i:22989312 original size:27 final size:27
Alignment explanation
Indices: 22989282--22989340 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
22989272 ATCCTAATGG
* *
22989282 ACTATCTCGTTTTTAATATCCCGACGA
1 ACTATCTCATGTTTAATATCCCGACGA
* *
22989309 ACTATCTCATGTTTAATGTCCCGATGA
1 ACTATCTCATGTTTAATATCCCGACGA
22989336 ACTAT
1 ACTAT
22989341 TTATGGTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (27 bp):
ACTATCTCATGTTTAATATCCCGACGA
Found at i:22991596 original size:24 final size:24
Alignment explanation
Indices: 22991557--22991614 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
22991547 ACCGAGGTAA
*
22991557 CTTGTTGG-CTTATCTTAGTAGAC
1 CTTGGTGGCCTTATCTTAGTAGAC
22991580 CTTGGTGGCCTTATCTTAGTAGAC
1 CTTGGTGGCCTTATCTTAGTAGAC
22991604 CTTGGTGGCCT
1 CTTGGTGGCCT
22991615 CCTTTTTCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 7 0.21
24 26 0.79
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.40
Consensus pattern (24 bp):
CTTGGTGGCCTTATCTTAGTAGAC
Found at i:22995461 original size:7 final size:7
Alignment explanation
Indices: 22995449--22995473 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22995439 AATGAAAACG
22995449 AAATATT
1 AAATATT
22995456 AAATATT
1 AAATATT
22995463 AAATATT
1 AAATATT
22995470 AAAT
1 AAAT
22995474 TTCTTAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:22999803 original size:12 final size:12
Alignment explanation
Indices: 22999786--22999811 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22999776 CCTAGGCTAA
22999786 AAGATACCACCT
1 AAGATACCACCT
22999798 AAGATACCACCT
1 AAGATACCACCT
22999810 AA
1 AA
22999812 AAAGAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (12 bp):
AAGATACCACCT
Found at i:23000936 original size:19 final size:19
Alignment explanation
Indices: 23000912--23001024 Score: 190
Period size: 19 Copynumber: 5.8 Consensus size: 19
23000902 AATTTTTGAG
23000912 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23000931 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
23000950 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23000969 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
23000990 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23001009 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23001025 ATATATGATT
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
19 69 0.78
21 19 0.22
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23000954 original size:38 final size:38
Alignment explanation
Indices: 23000912--23001031 Score: 190
Period size: 40 Copynumber: 3.2 Consensus size: 38
23000902 AATTTTTGAG
*
23000912 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
23000950 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCTTAGATAT
*
23000990 GATATGTAATCTTAGATATGATATGCAATCTTAGA-AT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
23001027 -ATATG
1 GATATG
23001032 ATTTTGTAAT
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
36 5 0.06
37 2 0.03
38 35 0.45
40 36 0.46
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:23000979 original size:59 final size:59
Alignment explanation
Indices: 23000913--23001024 Score: 206
Period size: 59 Copynumber: 1.9 Consensus size: 59
23000903 ATTTTTGAGG
23000913 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
* *
23000972 ATATGCAATCTTAGATATGATATGTAATCTTAGATATGATATGCAATCTTAGA
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGA
23001025 ATATATGATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (59 bp):
ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
Found at i:23001827 original size:23 final size:24
Alignment explanation
Indices: 23001786--23001839 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
23001776 GTACATGTAT
23001786 ATATTTTTTTAAAACGAATATTTTC
1 ATATTTTTTT-AAACGAATATTTTC
* *
23001811 CTATTTTTTT-AATGAATATTTTC
1 ATATTTTTTTAAACGAATATTTTC
23001834 ATATTT
1 ATATTT
23001840 ATATGTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 17 0.65
25 9 0.35
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (24 bp):
ATATTTTTTTAAACGAATATTTTC
Found at i:23002627 original size:98 final size:98
Alignment explanation
Indices: 23002512--23002703 Score: 330
Period size: 98 Copynumber: 2.0 Consensus size: 98
23002502 AAAAATCATG
*
23002512 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTATGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTATGATTTCTT
23002577 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* * * *
23002610 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCGTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTATGATTTCTT
*
23002675 AAATCTTGGATGAGTGGATGTTCTTTTAA
66 AAATCTTGGATAAGTGGATGTTCTTTTAA
23002704 CGTTTTATTG
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTATGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:23007213 original size:13 final size:12
Alignment explanation
Indices: 23007191--23007225 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
23007181 AGTTCAGATT
23007191 AAAAAAAAACAA
1 AAAAAAAAACAA
23007203 AAAACAAAAACAA
1 AAAA-AAAAACAA
23007216 AAATAAAAAA
1 AAA-AAAAAA
23007226 ATAAAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.19
13 16 0.76
14 1 0.05
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.03
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:23008731 original size:132 final size:132
Alignment explanation
Indices: 23008494--23008750 Score: 451
Period size: 132 Copynumber: 1.9 Consensus size: 132
23008484 CTGCATTAAC
* *
23008494 AGTGGAGCAGATCGAAGACGGCGAATCTTATTTTTCCAAGATAGTGGGGAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
23008559 CAAGCCTTGTCTCCCTGAGCAGCAACGAAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAACGAAGAAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCA
23008624 GT
131 GT
*
23008626 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
23008691 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCCTATCTCCCT
66 CAAGCCTTGTCTCCCTCAGCAGCAACGAAGAAGGTTGAAGATTGTAGATCCTATCTCCCT
23008751 GAAGTTGCAG
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 118 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAACGAAGAAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCA
GT
Found at i:23008984 original size:217 final size:217
Alignment explanation
Indices: 23008738--23009343 Score: 993
Period size: 217 Copynumber: 2.8 Consensus size: 217
23008728 AAGATTGTAG
23008738 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
23008803 AGAGAGCAGATCGCATTAAATCTTATCTCTCTGAAGTTGTAGTGGAGCAAACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATTAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
* *
23008868 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
23008933 GTGGAGCAGATTAAAACCGATA
196 GTGGAGCAGATTAAAACCGATA
* *
23008955 ATCCTATCTCCCTGAGGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTGTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
23009020 AGAGAGCAGATTGCATCAAATCTTATCT-TCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
66 AGAGAGCAGATCGCATTAAATCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
* *
23009084 TCTTATCTTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTAC
130 TCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTAC
* *
23009149 AGTGGAGTAGATTAAAGCCGATA
195 AGTGGAGCAGATTAAAACCGATA
*
23009172 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* * *
23009237 AGAGAGCAGATCGCATCT-AGTCTTATCTC-CTTGAAGTTGCAGTGAAGCAGACTAAATAAGCAA
66 AGAGAGCAGATCGCAT-TAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* * *
23009300 GTCTTATCCTCTTGAAGTTGCAGTGAGGTAGACTGAAGATGGCA
129 GTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA
23009344 CTAATTCCTA
Statistics
Matches: 361, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
216 2 0.01
217 359 0.99
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (217 bp):
ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGCATTAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
GTGGAGCAGATTAAAACCGATA
Found at i:23009088 original size:84 final size:86
Alignment explanation
Indices: 23008867--23009246 Score: 235
Period size: 89 Copynumber: 4.4 Consensus size: 86
23008857 AGTAAGCAAG
* * * *
23008867 TCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGC
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCT-TCTGAAGTTGC
*
23008932 AGTGGAGCAGATTAAAACCGATAA
63 AGTAGAGCAGATTAAAACCGATAA
* * * ** * * *
23008956 TCCTATCTCCCTGAGGTTGCAGTGGAGTGGATTAA-AACCTTAGATCTTATCTGTCTGAAGTTGC
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCT-TCTGAAGTTGC
** *
23009020 AG-AGAGCAGATT-GCATC-A-AA
63 AGTAGAGCAGATTAAAACCGATAA
23009040 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCTTCCTGAAGTTGCA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTT-CTGAAGTTGCA
* * * * **
23009105 GTGGGGCAGACTGAAGATGGCA-AA
64 GTAGAGCAGA-TTAAAACCG-ATAA
* * * * * *
23009129 TCTTATC-TCCTTGAAGTTACAGTGGAGTAGA-TTA-AAGCCGATAATCCTATCTCCCTGAAGTT
1 TCTTATCTTCC-TGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCT-TCTGAAGTT
* * *
23009191 GCAGTGGAGCGGATTAAAACC-TTAGA
61 GCAGTAGAGCAGATTAAAACCGATA-A
*
23009217 TCTTATC-TCTCTGAAGTTGCAG-AGAGCAGA
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGA
23009247 TCGCATCTAG
Statistics
Matches: 226, Mismatches: 47, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
83 1 0.00
84 51 0.23
85 9 0.04
86 10 0.04
87 22 0.10
88 52 0.23
89 81 0.36
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (86 bp):
TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTTCTGAAGTTGCAGT
AGAGCAGATTAAAACCGATAA
Found at i:23009189 original size:44 final size:43
Alignment explanation
Indices: 23008742--23009292 Score: 338
Period size: 44 Copynumber: 12.8 Consensus size: 43
23008732 TTGTAGATCC
** *
23008742 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * *** **
23008786 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATTA-AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
* * * * * *
23008826 TATCTCTCTGAAGTTGTAGTGGAGCAAACTAAGTAAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCATAATCT
* * ** *
23008870 TATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-AGTCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACCATAATCT
*
23008915 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-ATAATCT
* ** *
23008959 TATCTCCCTGAGGTTGCAGTGGAGTGGATTAAAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
** * ** *
23009003 TATCTGTCTGAAGTTGCAG-AGAGCAGATT-GCATCA-AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
* * * *
23009043 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCATAATCT
* * * **
23009087 TATCTTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACCATAATCT
* * * * *
23009132 TATCTCCTTGAAGTTACAGTGGAGTAGATTAAAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-ATAATCT
* *
23009176 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * *** * *
23009220 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC-TAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
* * *
23009260 TATCTCCTTGAAGTTGCAGTGAAGCAGACTAAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
23009293 TAAGCAAGTC
Statistics
Matches: 393, Mismatches: 92, Indels: 46
0.74 0.17 0.09
Matches are distributed among these distances:
40 63 0.16
41 24 0.06
42 12 0.03
43 27 0.07
44 199 0.51
45 67 0.17
46 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
Found at i:23009189 original size:173 final size:173
Alignment explanation
Indices: 23008867--23009194 Score: 421
Period size: 173 Copynumber: 1.9 Consensus size: 173
23008857 AGTAAGCAAG
* *
23008867 TCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGC
1 TCTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGC
* * * * *
23008932 AGTGGAGCAGATTAAAACCGATAATCCTATCTCCCTGAGGTTGCAGTGGAGTGGATTAAAACCTT
66 AGTGGAGCAGATGAAAACCGATAATCCTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAACCAT
* **
23008997 AGATCTTATCTGTCTGAAGTTGCAGAGAGCAGATTGCATCAAA
131 AGATCCTATCTCCCTGAAGTTGCAGAGAGCAGATTGCATCAAA
* *
23009040 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAAGTCTTATCTTCCTGAAGTTG
1 TCTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAGTCTTATCTCCCTGAAGTTG
* * ** * * *
23009103 CAGTGGGGCAGACTGAAGATGGCA-AATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTAAAGC
65 CAGTGGAGCAGA-TGAAAACCG-ATAATCCTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAAC
23009167 CGATA-ATCCTATCTCCCTGAAGTTGCAG
128 C-ATAGATCCTATCTCCCTGAAGTTGCAG
23009195 TGGAGCGGAT
Statistics
Matches: 132, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
171 1 0.01
172 37 0.28
173 91 0.69
174 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (173 bp):
TCTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATGAAAACCGATAATCCTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAACCAT
AGATCCTATCTCCCTGAAGTTGCAGAGAGCAGATTGCATCAAA
Found at i:23009597 original size:19 final size:19
Alignment explanation
Indices: 23009509--23009600 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
23009499 AATTTTTGAG
*
23009509 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
*
23009528 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
23009547 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
23009566 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23009585 GATATGCAGTCTTAGA
1 GATATGCAATCTTAGA
23009601 ATATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23010404 original size:23 final size:24
Alignment explanation
Indices: 23010363--23010416 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
23010353 ACATGTATAT
23010363 ATATTTTTTTAAAACGAATATTTTC
1 ATATTTTTTT-AAACGAATATTTTC
* *
23010388 CTATTTTTTT-AATGAATATTTTC
1 ATATTTTTTTAAACGAATATTTTC
23010411 ATATTT
1 ATATTT
23010417 ATATGTAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 17 0.65
25 9 0.35
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (24 bp):
ATATTTTTTTAAACGAATATTTTC
Found at i:23011209 original size:98 final size:98
Alignment explanation
Indices: 23011086--23011280 Score: 347
Period size: 98 Copynumber: 2.0 Consensus size: 98
23011076 AAAAATCATG
*
23011086 AAGGAAATATTCCGAGTTTGAGATTCT-AAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAAGG-ATCGTGCCCTAACGTATTGGGTGTGATTTCT
23011150 TAAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
65 TAAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
*
23011184 AAGGAAATATTCCGAGTTTGGGATTCTAAAAGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAAGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
23011249 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
23011281 TTTATTGTAT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
98 88 0.95
99 5 0.05
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAAGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:23011808 original size:55 final size:55
Alignment explanation
Indices: 23011749--23011860 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
23011739 ATGATAAAAT
*
23011749 AATGATGATAAATGAAATAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
1 AATGATGATAAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
23011804 AATGATGATAAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
1 AATGATGATAAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
23011859 AA
1 AA
23011861 ATAAAAACAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (55 bp):
AATGATGATAAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
Found at i:23011876 original size:55 final size:54
Alignment explanation
Indices: 23011758--23011876 Score: 177
Period size: 55 Copynumber: 2.2 Consensus size: 54
23011748 TAATGATGAT
* * *
23011758 AAATGAAATAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCCAATGATGAT
1 AAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCCAA-GATAAA
23011813 AAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCCAA-ATAAA
1 AAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCCAAGATAAA
23011866 AACATGGAAAC
1 AA-AT-GAAAC
23011877 CCTAGTTTGG
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 5 0.08
54 2 0.03
55 52 0.88
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (54 bp):
AAATGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCCAAGATAAA
Found at i:23012335 original size:5 final size:5
Alignment explanation
Indices: 23012325--23012349 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
23012315 TCCAAAGATG
23012325 TGAAT TGAAT TGAAT TGAAT TGAAT
1 TGAAT TGAAT TGAAT TGAAT TGAAT
23012350 ATAATTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TGAAT
Found at i:23012803 original size:24 final size:26
Alignment explanation
Indices: 23012749--23012845 Score: 80
Period size: 25 Copynumber: 3.9 Consensus size: 26
23012739 TATAGCTTTA
*
23012749 ATGAGCGTCCCGATTAATGGCTCTCT
1 ATGAGCTTCCCGATTAATGGCTCTCT
*
23012775 -GGAGCTTCCCGATT-ATGGCTCT-T
1 ATGAGCTTCCCGATTAATGGCTCTCT
** *
23012798 ATGAGCTTCTTG-TTACATGGCTCAC-
1 ATGAGCTTCCCGATTA-ATGGCTCTCT
*
23012823 ATAAGCTTCCCG-TTATATGGCTC
1 ATGAGCTTCCCGATTA-ATGGCTC
23012846 GAGAGAGAGC
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
23 3 0.05
24 16 0.28
25 38 0.67
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (26 bp):
ATGAGCTTCCCGATTAATGGCTCTCT
Found at i:23015969 original size:17 final size:18
Alignment explanation
Indices: 23015947--23015990 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
23015937 TAATAAGATG
23015947 TAATATTAAAT-TTAATA
1 TAATATTAAATATTAATA
* *
23015964 TAATATT-TATATTAATT
1 TAATATTAAATATTAATA
23015981 TAATATTAAA
1 TAATATTAAA
23015991 GTGATTAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATTAAATATTAATA
Found at i:23015986 original size:11 final size:11
Alignment explanation
Indices: 23015947--23015989 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
23015937 TAATAAGATG
23015947 TAATATTAAATT
1 TAATATT-AATT
23015959 TAATA-TAATAT
1 TAATATTAAT-T
*
23015970 TTATATTAATT
1 TAATATTAATT
23015981 TAATATTAA
1 TAATATTAA
23015990 AGTGATTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 3 0.11
11 15 0.56
12 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TAATATTAATT
Found at i:23046701 original size:19 final size:19
Alignment explanation
Indices: 23046677--23046715 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
23046667 GATTGGGTGC
23046677 AGTGCGGTGCGTTTAGCTT
1 AGTGCGGTGCGTTTAGCTT
23046696 AGTGCGGTGCGTTTAGCTT
1 AGTGCGGTGCGTTTAGCTT
23046715 A
1 A
23046716 CTTTTTGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.13, C:0.15, G:0.36, T:0.36
Consensus pattern (19 bp):
AGTGCGGTGCGTTTAGCTT
Found at i:23047190 original size:16 final size:16
Alignment explanation
Indices: 23047169--23047237 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
23047159 TTTGGTTCGC
23047169 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23047185 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23047201 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
23047218 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23047234 TGTA
1 TGTA
23047238 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23047215 original size:33 final size:32
Alignment explanation
Indices: 23047169--23047237 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
23047159 TTTGGTTCGC
23047169 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
23047201 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
23047234 TGTA
1 TGTA
23047238 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:23047302 original size:44 final size:45
Alignment explanation
Indices: 23047218--23047308 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23047208 GGATTAGAGG
* * *
23047218 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
23047263 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
23047307 TG
1 TG
23047309 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:23047560 original size:157 final size:157
Alignment explanation
Indices: 23047360--23047676 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
23047350 TAAAATACCC
*
23047360 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
23047425 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
23047490 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
* *
23047517 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
23047582 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23047647 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23047674 TTA
1 TTA
23047677 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 24 0.16
157 128 0.84
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23047647 original size:16 final size:16
Alignment explanation
Indices: 23047610--23047651 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23047600 TTAATCATAT
*
23047610 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23047626 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23047641 TTAAAATATAT
1 TTAAAATATAT
23047652 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23047658 original size:14 final size:15
Alignment explanation
Indices: 23047619--23047660 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23047609 TTTAAACATA
*
23047619 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23047634 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23047648 A-TATAATTTAATA
1 ATTATAATTAAATA
23047661 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23047747 original size:120 final size:121
Alignment explanation
Indices: 23047613--23047905 Score: 502
Period size: 120 Copynumber: 2.4 Consensus size: 121
23047603 ATCATATTTA
23047613 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23047678 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATGTG
23047733 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23047798 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
* * *
23047854 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23047906 TAAAATAATT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 3 0.02
120 160 0.97
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
Found at i:23047778 original size:14 final size:15
Alignment explanation
Indices: 23047739--23047780 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23047729 AAGTAACATA
*
23047739 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23047754 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23047768 A-TATAATTTAATA
1 ATTATAATTAAATA
23047781 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23061737 original size:21 final size:22
Alignment explanation
Indices: 23061713--23061754 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
23061703 TGATTTTTTA
23061713 AAATATTAAAATATT-AATATC
1 AAATATTAAAATATTCAATATC
*
23061734 AAATATTATAATATTCAATAT
1 AAATATTAAAATATTCAATAT
23061755 TATTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATATTAAAATATTCAATATC
Found at i:23061801 original size:19 final size:17
Alignment explanation
Indices: 23061771--23061836 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 17
23061761 AAATACATGT
*
23061771 TAAATTATTTATATTTAA
1 TAAATAATTTAT-TTTAA
23061789 TAATATAATTTATTATTAA
1 TAA-ATAATTTATT-TTAA
23061808 TAAAATTAA-TTATTTTAA
1 T-AAA-TAATTTATTTTAA
*
23061826 TAAATTATTTA
1 TAAATAATTTA
23061837 ATATTAAAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
16 2 0.05
17 6 0.15
18 9 0.22
19 19 0.46
20 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAAATAATTTATTTTAA
Found at i:23061836 original size:36 final size:38
Alignment explanation
Indices: 23061772--23061843 Score: 103
Period size: 36 Copynumber: 1.9 Consensus size: 38
23061762 AATACATGTT
* *
23061772 AAATTATTTATATTTAATAATATAATTTATTATTAATA
1 AAATTAATTATATTTAATAATATAATTTAATATTAATA
*
23061810 AAATTAATTAT-TTTAATAA-ATTATTTAATATTAA
1 AAATTAATTATATTTAATAATATAATTTAATATTAA
23061844 AGTTTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.42
37 8 0.26
38 10 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (38 bp):
AAATTAATTATATTTAATAATATAATTTAATATTAATA
Found at i:23062388 original size:17 final size:19
Alignment explanation
Indices: 23062352--23062388 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
23062342 ATCTAAACAC
*
23062352 TAGAAAATATCAATTTTTT
1 TAGAAAATATCAATTCTTT
23062371 TAGAAAAT-T-AATTCTTT
1 TAGAAAATATCAATTCTTT
23062388 T
1 T
23062389 TTCAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 1 0.06
19 8 0.47
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
TAGAAAATATCAATTCTTT
Found at i:23066111 original size:23 final size:25
Alignment explanation
Indices: 23066081--23066128 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
23066071 TATCATTTTT
23066081 TAATTAAA-ATATTAATA-AATATC
1 TAATTAAATATATTAATATAATATC
23066104 TAATTAAATTATATTAATATAATAT
1 TAATTAAA-TATATTAATATAATAT
23066129 TTTTATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
25 9 0.41
26 5 0.23
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATTAAATATATTAATATAATATC
Found at i:23067932 original size:15 final size:16
Alignment explanation
Indices: 23067902--23067934 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23067892 TAAATTATTT
23067902 TTTGGTTACTTTGCATG
1 TTTGGTTAC-TTGCATG
23067919 TTTGGTTA-TTGCATG
1 TTTGGTTACTTGCATG
23067934 T
1 T
23067935 GTAAGTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.09, G:0.24, T:0.55
Consensus pattern (16 bp):
TTTGGTTACTTGCATG
Found at i:23075660 original size:18 final size:18
Alignment explanation
Indices: 23075609--23075661 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
23075599 ATCGAGAAAA
*
23075609 TTAAAA-TATTGTGAGAG
1 TTAAAAGTATTGTGAGTG
* * *
23075626 TTAAAAGCATGGCGAGTG
1 TTAAAAGTATTGTGAGTG
23075644 TTAAAAGTATTGTGAGTG
1 TTAAAAGTATTGTGAGTG
23075662 AAAGAATAAG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 6 0.21
18 22 0.79
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (18 bp):
TTAAAAGTATTGTGAGTG
Found at i:23080500 original size:19 final size:18
Alignment explanation
Indices: 23080478--23080525 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
23080468 TGTCTAATTT
23080478 GGTAAAATTGTGGA-AGAGA
1 GGTAAAATTGT-GACA-AGA
23080497 GGTAAAATTGTGACCAAGA
1 GGTAAAATTGTGA-CAAGA
23080516 GGTAAAATTG
1 GGTAAAATTG
23080526 AGCCACTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 2 0.07
19 24 0.89
20 1 0.04
ACGTcount: A:0.42, C:0.04, G:0.31, T:0.23
Consensus pattern (18 bp):
GGTAAAATTGTGACAAGA
Found at i:23081172 original size:5 final size:5
Alignment explanation
Indices: 23081162--23081195 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
23081152 GACTTGGAAA
*
23081162 TTAAT TTAAT TTAAT TTAAT TATTAT TTAAT TTA
1 TTAAT TTAAT TTAAT TTAAT T-TAAT TTAAT TTA
23081196 TTGTAATTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:23086829 original size:33 final size:33
Alignment explanation
Indices: 23086787--23086856 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
23086777 TACACTATGT
*
23086787 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTAGATTAACTCTTATGAGCA
*
23086820 TTGGTGTGTTGGTTGGATTAACTCTTATGAGCA
1 TTGGTGTGTTGGTTAGATTAACTCTTATGAGCA
23086853 TTGG
1 TTGG
23086857 AGTGATGGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.17, C:0.09, G:0.31, T:0.43
Consensus pattern (33 bp):
TTGGTGTGTTGGTTAGATTAACTCTTATGAGCA
Found at i:23086871 original size:33 final size:33
Alignment explanation
Indices: 23086802--23086886 Score: 98
Period size: 33 Copynumber: 2.6 Consensus size: 33
23086792 GTGTTGGTTA
* * * **
23086802 GATTAGCTCTTATGAGCATTGGTGTGTTGGTTG
1 GATTAACTCTTATGAGCATTGGAGTGATGGAAG
23086835 GATTAACTCTTATGAGCATTGGAGTGATGGAAG
1 GATTAACTCTTATGAGCATTGGAGTGATGGAAG
* * *
23086868 GATTGACTCATGTGAGCAT
1 GATTAACTCTTATGAGCAT
23086887 CTGGTGTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.24, C:0.11, G:0.31, T:0.35
Consensus pattern (33 bp):
GATTAACTCTTATGAGCATTGGAGTGATGGAAG
Found at i:23087356 original size:11 final size:11
Alignment explanation
Indices: 23087324--23087357 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
23087314 GTATTATGCA
23087324 AATGAAACGGT
1 AATGAAACGGT
*
23087335 AA-GAAAAGGT
1 AATGAAACGGT
23087345 AATGAAACGGT
1 AATGAAACGGT
23087356 AA
1 AA
23087358 GTTCATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.53, C:0.06, G:0.26, T:0.15
Consensus pattern (11 bp):
AATGAAACGGT
Found at i:23088948 original size:12 final size:12
Alignment explanation
Indices: 23088931--23088958 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23088921 GCAAGTTATA
23088931 ACAATATATTAC
1 ACAATATATTAC
23088943 ACAATATATTAC
1 ACAATATATTAC
23088955 ACAA
1 ACAA
23088959 CACCTACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (12 bp):
ACAATATATTAC
Found at i:23105455 original size:24 final size:25
Alignment explanation
Indices: 23105367--23105472 Score: 73
Period size: 24 Copynumber: 4.3 Consensus size: 25
23105357 TAGTTCATTT
23105367 TAAAAATAAA-AT-TTAATTAAAAC-A
1 TAAAAATAAATATATTAA--AAAACAA
*
23105391 TAAATTAAT-AATA-ATTAAAAATC-A
1 TAAA--AATAAATATATTAAAAAACAA
*
23105415 TAAAAAATAAATATATTAAGAAA-AA
1 T-AAAAATAAATATATTAAAAAACAA
* *
23105440 TAAAAATATATTTATTAAAAAACCAA
1 TAAAAATAAATATATTAAAAAA-CAA
23105466 TAAAAAT
1 TAAAAAT
23105473 GAACTAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
23 3 0.05
24 32 0.48
25 14 0.21
26 17 0.26
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (25 bp):
TAAAAATAAATATATTAAAAAACAA
Found at i:23120937 original size:6 final size:6
Alignment explanation
Indices: 23120923--23121044 Score: 120
Period size: 6 Copynumber: 19.8 Consensus size: 6
23120913 GAAGTACAAG
* * *
23120923 AAAAGA AAAATA AAACA-A AACAACTA AAAATA AAAATA AACATA AACATA
1 AAAATA AAAATA AAA-ATA AA-AA-TA AAAATA AAAATA AAAATA AAAATA
* * * * * *
23120973 AACATA AACATA AACATA AACATA AACATA AACATAA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA
23121022 AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAAT
23121045 CAAACAAATA
Statistics
Matches: 108, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
6 96 0.89
7 9 0.08
8 3 0.03
ACGTcount: A:0.75, C:0.09, G:0.01, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:23120967 original size:12 final size:12
Alignment explanation
Indices: 23120928--23121061 Score: 126
Period size: 12 Copynumber: 10.8 Consensus size: 12
23120918 ACAAGAAAAG
23120928 AAAAATAAAACA-
1 AAAAAT-AAACAT
*
23120940 AAACAACTAAAAAT
1 AAA-AA-TAAACAT
23120954 AAAAATAAACAT
1 AAAAATAAACAT
*
23120966 AAACATAAACAT
1 AAAAATAAACAT
*
23120978 AAACATAAACAT
1 AAAAATAAACAT
*
23120990 AAACATAAACAT
1 AAAAATAAACAT
* *
23121002 AAACATAAAAAAT
1 AAAAAT-AAACAT
*
23121015 AAAAATAAAAAT
1 AAAAATAAACAT
*
23121027 AAAAATAAAAAT
1 AAAAATAAACAT
*
23121039 AAAAATCAAACAA
1 AAAAAT-AAACAT
23121052 ATAAAATAAA
1 A-AAAATAAA
23121062 TGATCCTCAT
Statistics
Matches: 109, Mismatches: 7, Indels: 11
0.86 0.06 0.09
Matches are distributed among these distances:
12 74 0.68
13 26 0.24
14 9 0.08
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATAAACAT
Found at i:23121062 original size:4 final size:5
Alignment explanation
Indices: 23120949--23121061 Score: 61
Period size: 6 Copynumber: 20.6 Consensus size: 5
23120939 AAAACAACTA
23120949 AAAAT AAAAAT AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT
1 AAAAT -AAAAT AAA-AT AAA-AT AAA-AT AAA-AT AAA-AT AAA-AT AAA-AT
* *
23121002 AAACAT AAAA- AATA- AAAAT AAAAAT AAAAAT AAAAAT AAAAAT CAAA-
1 AAA-AT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT -AAAAT AAAAT
*
23121049 CAAAT AAAAT AAA
1 AAAAT AAAAT AAA
23121062 TGATCCTCAT
Statistics
Matches: 99, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
4 10 0.10
5 14 0.14
6 75 0.76
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:23122743 original size:8 final size:8
Alignment explanation
Indices: 23122723--23122780 Score: 84
Period size: 8 Copynumber: 7.4 Consensus size: 8
23122713 TAAAATGAAT
23122723 TAATAAAGA
1 TAATAAA-A
23122732 -AATAAAA
1 TAATAAAA
23122739 TAATAAAA
1 TAATAAAA
23122747 TAATAAAA
1 TAATAAAA
23122755 TAATAAAA
1 TAATAAAA
*
23122763 TAATAATA
1 TAATAAAA
23122771 -AATAAAA
1 TAATAAAA
23122778 TAA
1 TAA
23122781 ATAGGAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
7 7 0.16
8 38 0.84
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (8 bp):
TAATAAAA
Found at i:23122751 original size:3 final size:3
Alignment explanation
Indices: 23122732--23122780 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
23122722 TTAATAAAGA
23122732 AAT AA- AAT AAT AA- AAT AAT AA- AAT AAT AA- AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
23122774 AA- AAT AA
1 AAT AAT AA
23122781 ATAGGAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
2 10 0.25
3 27 0.68
4 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:23122751 original size:39 final size:39
Alignment explanation
Indices: 23122706--23122780 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
23122696 TAAGCAGAGT
* * *
23122706 AATAATATAA-AATGAATTAATAAAGAAATAAAATAATAA
1 AATAATAAAATAATAAAATAAT-AAGAAATAAAATAATAA
*
23122745 AATAATAAAATAATAAAATAATAATAAATAAAATAA
1 AATAATAAAATAATAAAATAATAAGAAATAAAATAA
23122781 ATAGGAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 22 0.71
40 9 0.29
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (39 bp):
AATAATAAAATAATAAAATAATAAGAAATAAAATAATAA
Found at i:23122783 original size:16 final size:15
Alignment explanation
Indices: 23122705--23122780 Score: 77
Period size: 16 Copynumber: 5.0 Consensus size: 15
23122695 ATAAGCAGAG
23122705 TAATAATATAAAATGAA
1 TAATAA-ATAAAAT-AA
*
23122722 TTAATAAA-GAAATAA
1 -TAATAAATAAAATAA
23122737 -AAT-AATAAAATAA
1 TAATAAATAAAATAA
*
23122750 TAAAATAATAAAATAA
1 TAATA-AATAAAATAA
23122766 TAATAAATAAAATAA
1 TAATAAATAAAATAA
23122781 ATAGGAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.04
13 9 0.18
14 2 0.04
15 12 0.24
16 18 0.36
17 1 0.02
18 6 0.12
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
TAATAAATAAAATAA
Found at i:23129488 original size:12 final size:12
Alignment explanation
Indices: 23129473--23129512 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
23129463 AATTAGAATG
*
23129473 TAAAAATTAAAC
1 TAAAAATTAAAA
*
23129485 TAAAAACTAAAA
1 TAAAAATTAAAA
*
23129497 TAAAAATAAAAA
1 TAAAAATTAAAA
23129509 TAAA
1 TAAA
23129513 TGTTAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:23131079 original size:19 final size:19
Alignment explanation
Indices: 23131052--23131088 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23131042 GAGTTAGGCA
23131052 TACGAGTCATCAAAACAAT
1 TACGAGTCATCAAAACAAT
* *
23131071 TACGGGTCATCGAAACAA
1 TACGAGTCATCAAAACAA
23131089 CAGAAAATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (19 bp):
TACGAGTCATCAAAACAAT
Found at i:23132440 original size:5 final size:5
Alignment explanation
Indices: 23132430--23132455 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23132420 GTTTCTCTCC
23132430 CTTTT CTTTT CTTTT CTTTT CTTTT C
1 CTTTT CTTTT CTTTT CTTTT CTTTT C
23132456 CCTGGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
CTTTT
Found at i:23133209 original size:11 final size:12
Alignment explanation
Indices: 23133177--23133214 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
23133167 GAGGGTAGGA
23133177 ATCTGCATCTAT
1 ATCTGCATCTAT
*
23133189 ATCTAC-TCTAT
1 ATCTGCATCTAT
23133200 -TCTGCATCTAT
1 ATCTGCATCTAT
23133211 ATCT
1 ATCT
23133215 TATATGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.18
11 10 0.45
12 8 0.36
ACGTcount: A:0.24, C:0.26, G:0.05, T:0.45
Consensus pattern (12 bp):
ATCTGCATCTAT
Found at i:23139615 original size:26 final size:26
Alignment explanation
Indices: 23139586--23139643 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
23139576 GTACAATAAC
*
23139586 TTTTATAACATAATATAAAAA-ATAT
1 TTTTTTAACATAATATAAAAAGATAT
** * *
23139611 TTTTTTGTCATAATTTAAAAAGTTAT
1 TTTTTTAACATAATATAAAAAGATAT
23139637 TTTTTTA
1 TTTTTTA
23139644 CGAATAAGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (26 bp):
TTTTTTAACATAATATAAAAAGATAT
Found at i:23139622 original size:25 final size:26
Alignment explanation
Indices: 23139594--23139642 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
23139584 ACTTTTATAA
23139594 CATAATATAAAAA-ATATTTTTTTGT
1 CATAATATAAAAAGATATTTTTTTGT
* *
23139619 CATAATTTAAAAAGTTATTTTTTT
1 CATAATATAAAAAGATATTTTTTT
23139643 ACGAATAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (26 bp):
CATAATATAAAAAGATATTTTTTTGT
Found at i:23140200 original size:17 final size:17
Alignment explanation
Indices: 23140167--23140200 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23140157 ATTCACAAAT
*
23140167 TATTTTTATAATATATA
1 TATTTTTACAATATATA
*
23140184 TATTTTTACAATTTATA
1 TATTTTTACAATATATA
23140201 ATATAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTTACAATATATA
Found at i:23148030 original size:109 final size:109
Alignment explanation
Indices: 23147839--23148061 Score: 419
Period size: 109 Copynumber: 2.0 Consensus size: 109
23147829 GGTTTAATTT
*
23147839 CTAAAAATGATGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGCAA
1 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGCAA
*
23147904 ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCGCAGTGGTG
66 ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCGCAGTGGTA
*
23147948 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCTTGACTACATCGCAGAAGGGCAA
1 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGCAA
23148013 ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCGCAGTGGTA
66 ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCGCAGTGGTA
23148057 CTAAA
1 CTAAA
23148062 GACATAACTA
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 111 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.19
Consensus pattern (109 bp):
CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGCAA
ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCGCAGTGGTA
Found at i:23151669 original size:50 final size:50
Alignment explanation
Indices: 23151562--23151796 Score: 335
Period size: 50 Copynumber: 4.7 Consensus size: 50
23151552 CATGCCAAAT
* ** * * *
23151562 CCATGTCCCAAACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAACG
**
23151613 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
*
23151663 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
* * *
23151713 CCATGTCCCAGGCATGATCTTACATGGGACCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
* *
23151763 CCATGTCCCAGTCATGGTCTTACATTGGACCTCT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
23151797 TTACCCAAAT
Statistics
Matches: 166, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
50 140 0.84
51 26 0.16
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
Found at i:23158461 original size:41 final size:41
Alignment explanation
Indices: 23158416--23158553 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 41
23158406 CAGCAATTAG
* * *
23158416 CCTGCTAGACTTAAAGTCCGAATTATTTCACCGGCCTTAAA
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
* *
23158457 CCTGCTAGACTTTAAGTCTGAATTATATCACTGGCCTTAAG
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
* *
23158498 CCTGCTAGACTTTAAGTTTGAATTATATCATCGGCCTTAAA
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
23158539 CCTGCTAGACTTTAA
1 CCTGCTAGACTTTAA
23158554 AAATTTCAAT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (41 bp):
CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
Found at i:23167011 original size:17 final size:18
Alignment explanation
Indices: 23166989--23167029 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
23166979 TTATCGTTTG
23166989 TTTATTTTTC-CTATTTA
1 TTTATTTTTCACTATTTA
*
23167006 TTTA-TTTTCATTATTTA
1 TTTATTTTTCACTATTTA
23167023 TTTATTT
1 TTTATTT
23167030 CTATCTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 14 0.67
18 2 0.10
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATTTTTCACTATTTA
Found at i:23170644 original size:27 final size:27
Alignment explanation
Indices: 23170600--23170661 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
23170590 GAGCCCTATT
*
23170600 CAGTAACAGTACAGTGT-GGCCTTAGCC
1 CAGT-ACAGTACAATGTGGGCCTTAGCC
23170627 CAGTACAGTAACAATGTGGGCCTTAGCC
1 CAGTACAGT-ACAATGTGGGCCTTAGCC
*
23170655 CAATACA
1 CAGTACA
23170662 ATATCAGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 5 0.16
27 10 0.32
28 16 0.52
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTACAGTACAATGTGGGCCTTAGCC
Found at i:23170785 original size:26 final size:26
Alignment explanation
Indices: 23170751--23170857 Score: 144
Period size: 26 Copynumber: 4.1 Consensus size: 26
23170741 AACACACCAA
* *
23170751 TATCACAGCAAAGCTGCCCGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
*
23170777 TATCGCAGCAAAGCTACCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
23170803 TATCGCAACAAAGCTGCCAAT-ATCAG
1 TATCGCAGCAAAGCTGCCAGTAAT-AG
*
23170829 TATCGCAGCAAAGTTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
23170855 TAT
1 TAT
23170858 ACTTCCTCCA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.03
26 66 0.94
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:23173304 original size:18 final size:18
Alignment explanation
Indices: 23173283--23173323 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
23173273 AGGATCTGTG
* *
23173283 TCTGCATTTGTATCTGAA
1 TCTGAATTTGCATCTGAA
*
23173301 TCTGAATTTGCATCTGTA
1 TCTGAATTTGCATCTGAA
23173319 TCTGA
1 TCTGA
23173324 TTATGAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
TCTGAATTTGCATCTGAA
Found at i:23173330 original size:24 final size:24
Alignment explanation
Indices: 23173285--23173330 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
23173275 GATCTGTGTC
* *
23173285 TGCATTTGTATCTGAATCTGAATT
1 TGCATCTGTATCTGAATATGAATT
*
23173309 TGCATCTGTATCTGATTATGAA
1 TGCATCTGTATCTGAATATGAA
23173331 AATACATCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (24 bp):
TGCATCTGTATCTGAATATGAATT
Found at i:23178814 original size:22 final size:22
Alignment explanation
Indices: 23178772--23178818 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
23178762 GGTTTTTGGA
* *
23178772 AAAAAATAATAAAAATTAAATT
1 AAAAAATAAGAAAAATAAAATT
23178794 AAAAAATAAGAAATAA-AAAATT
1 AAAAAATAAGAAA-AATAAAATT
23178816 AAA
1 AAA
23178819 TCCTACAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAAAATAAGAAAAATAAAATT
Found at i:23182737 original size:31 final size:32
Alignment explanation
Indices: 23182598--23182767 Score: 157
Period size: 32 Copynumber: 5.4 Consensus size: 32
23182588 GAATGGTTAC
* * * *
23182598 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
* *** * *
23182629 AAGCTATCAGTAGTAGTGATATGAGCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
* * *
23182661 CAA-CCATCAGTAACAGTAAAATGATCGACACA
1 -AAGCCATCAGTAACGGTAATATGATCGGCACA
* * *
23182693 TAGCCATCGGTAACGGTAATATGATAGGC-CA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
*
23182724 AAGCCATCAGTAACGGTACTATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
23182756 AAGCCATCAGTA
1 AAGCCATCAGTA
23182768 GCATCGCAGC
Statistics
Matches: 110, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
31 37 0.34
32 71 0.65
33 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGGCACA
Found at i:23183056 original size:27 final size:27
Alignment explanation
Indices: 23183018--23183164 Score: 147
Period size: 27 Copynumber: 5.5 Consensus size: 27
23183008 GGCAAAAATA
23183018 GTCA-TTTA-CCTACCA-GGGCATTACG
1 GTCATTTTACCCTA-CAGGGGCATTACG
** *
23183043 GTCATTTTACCCTACATTGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
23183070 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * *
23183097 ATTATTTTACCTTATAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
23183124 GTTATTTTACTCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
23183151 GTCATGTTACCCTA
1 GTCATTTTACCCTA
23183165 TAAGGGTATT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
25 4 0.04
26 6 0.06
27 90 0.90
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:23185405 original size:18 final size:18
Alignment explanation
Indices: 23185382--23185424 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
23185372 TTTTTTTGTC
*
23185382 TTTATTTATTTATTTATT
1 TTTATTTATTTATTTATA
23185400 TTTATTTA-TTATTTATA
1 TTTATTTATTTATTTATA
23185417 TTT-TTTAT
1 TTTATTTAT
23185425 GCTTTAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATTTATTTATTTATA
Found at i:23185413 original size:13 final size:13
Alignment explanation
Indices: 23185386--23185424 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
23185376 TTTGTCTTTA
23185386 TTTATTTATTTATT
1 TTTATTTA-TTATT
23185400 TTTATTTATTATT
1 TTTATTTATTATT
* *
23185413 TATATTTTTTAT
1 TTTATTTATTAT
23185425 GCTTTAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTATTTATTATT
Found at i:23186476 original size:17 final size:17
Alignment explanation
Indices: 23186454--23186536 Score: 64
Period size: 17 Copynumber: 4.8 Consensus size: 17
23186444 CCAAATAAGT
23186454 AATAAATAATAAAATAA
1 AATAAATAATAAAATAA
*
23186471 AATAAAGCAAT-AAATAA
1 AATAAA-TAATAAAATAA
* * * *
23186488 AGTAAAGAAAGAAAAAAA
1 AATAAA-TAATAAAATAA
23186506 TAATAAATAATTAAAAT-A
1 -AATAAATAA-TAAAATAA
23186524 AATAAA-AATAAAA
1 AATAAATAATAAAA
23186537 ATTGGGTTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
15 5 0.09
16 2 0.04
17 26 0.49
18 11 0.21
19 9 0.17
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (17 bp):
AATAAATAATAAAATAA
Found at i:23186523 original size:16 final size:16
Alignment explanation
Indices: 23186454--23186538 Score: 52
Period size: 16 Copynumber: 5.2 Consensus size: 16
23186444 CCAAATAAGT
23186454 AATAAATAATAAA-ATAA
1 AATAAATAA-AAATA-AA
*
23186471 AATAAAGCAATAAAT-AA
1 AATAAA-TAA-AAATAAA
* *
23186488 AGTAAAGAAAGAA-AAA
1 AATAAATAAA-AATAAA
*
23186504 AAT-AATAAATAATTAA
1 AATAAATAAA-AATAAA
23186520 AATAAATAAAAATAAA
1 AATAAATAAAAATAAA
23186536 AAT
1 AAT
23186539 TGGGTTGCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
15 8 0.15
16 21 0.39
17 19 0.35
18 6 0.11
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (16 bp):
AATAAATAAAAATAAA
Found at i:23191639 original size:44 final size:43
Alignment explanation
Indices: 23191568--23191706 Score: 138
Period size: 42 Copynumber: 3.2 Consensus size: 43
23191558 AACGTGTTAT
** * *
23191568 CGTGTAAGACCACATCTGGGACGTTGGCATCGATTTGA-GATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATAT-ATGA-TTA
* * * *
23191612 CGTGTAAGACCATGTTTGAGACATTGGCGTC-ATATATGATTG
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
* * *
23191654 CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
*
23191697 CTTGTAAGAC
1 CGTGTAAGAC
23191707 ACGTCTAGGA
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 29 0.38
43 23 0.30
44 25 0.32
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
Found at i:23197222 original size:72 final size:72
Alignment explanation
Indices: 23197115--23197252 Score: 231
Period size: 72 Copynumber: 1.9 Consensus size: 72
23197105 TTTTCAAACT
* * *
23197115 CAAGTTTTAAACAATCTCGGGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCTTT
1 CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATACTTT
23197180 TTTCCCC
66 TTTCCCC
* *
23197187 CAAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCGTGATACTTT
1 CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATACTTT
23197252 T
66 T
23197253 CTCTAAAATC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (72 bp):
CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATACTTT
TTTCCCC
Found at i:23197544 original size:106 final size:106
Alignment explanation
Indices: 23197398--23197600 Score: 284
Period size: 106 Copynumber: 1.9 Consensus size: 106
23197388 AAAAATAATA
* * * *
23197398 AAGGCAATATTTTGCATTTGGGAATTCGGGAAAGCATGCCCTAATGTGTTGGGTTTCGATTTTTT
1 AAGGCAATATTTTGCATTTAGAAATTCGGGAAAG-ATGCCCTAATGTGCTGGGTTTCGATTTTTC
*
23197463 CGTTCGACCAAATAACCAAATATCCT-TTAAAATTTCAGAGT
65 CGTTCAACCAAATAACCAAATATCCTCTTAAAATTTCAGAGT
*
23197504 AAGGCAATATTTTGCGTTTAGAAATTCGAGGAAATG-TGCCCTAATGTGCTGGGTTTCGATTTTT
1 AAGGCAATATTTTGCATTTAGAAATTCG-GGAAA-GATGCCCTAATGTGCTGGGTTTCGATTTTT
* * *
23197568 CCGTTTAACCAAATAGCCAAATATTCTCTTAAA
64 CCGTTCAACCAAATAACCAAATATCCTCTTAAA
23197601 TCTTAATCCA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
106 74 0.87
107 10 0.12
108 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (106 bp):
AAGGCAATATTTTGCATTTAGAAATTCGGGAAAGATGCCCTAATGTGCTGGGTTTCGATTTTTCC
GTTCAACCAAATAACCAAATATCCTCTTAAAATTTCAGAGT
Found at i:23199257 original size:25 final size:25
Alignment explanation
Indices: 23199211--23199258 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23199201 CACGCCACAG
* *
23199211 CTCTTATGAGCTTCCTATTATTTAT
1 CTCTTATGAGCATCCGATTATTTAT
23199236 CTCTTATGAGCATCTCGA-TATTT
1 CTCTTATGAGCATC-CGATTATTT
23199259 GGCTCTCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (25 bp):
CTCTTATGAGCATCCGATTATTTAT
Found at i:23199264 original size:25 final size:25
Alignment explanation
Indices: 23199209--23199264 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
23199199 GACACGCCAC
* *
23199209 AGCTCTTATGAGCTTCCTATTATTT
1 AGCTCTTATGAGCATCCGATTATTT
*
23199234 ATCTCTTATGAGCATCTCGA-TATTT
1 AGCTCTTATGAGCATC-CGATTATTT
*
23199259 GGCTCT
1 AGCTCT
23199265 CACGAGCTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (25 bp):
AGCTCTTATGAGCATCCGATTATTT
Found at i:23199306 original size:25 final size:25
Alignment explanation
Indices: 23199278--23199417 Score: 103
Period size: 24 Copynumber: 5.7 Consensus size: 25
23199268 GAGCTTTTCG
*
23199278 TTTAGTGGCTCTCTTGAGCTTCCC-A
1 TTTA-TGGCTCTCATGAGCTTCCCAA
**
23199303 TTTATGGCTCAT-ATGAGCTTCCTGA
1 TTTATGGCTC-TCATGAGCTTCCCAA
* **
23199328 -TAATTGGCTC-CCGGAGCTTCCCAA
1 TTTA-TGGCTCTCATGAGCTTCCCAA
*
23199352 TATT-TGGCTCTCATGAGCTTCCCGA
1 T-TTATGGCTCTCATGAGCTTCCCAA
* * *
23199377 TTAATGGCTCTCTTGAGCTTCCCGA
1 TTTATGGCTCTCATGAGCTTCCCAA
*
23199402 -TTATGGCTTTCATGAG
1 TTTATGGCTCTCATGAG
23199418 TTTCTCGTAA
Statistics
Matches: 91, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
24 46 0.51
25 44 0.48
26 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (25 bp):
TTTATGGCTCTCATGAGCTTCCCAA
Found at i:23199321 original size:49 final size:50
Alignment explanation
Indices: 23199258--23199421 Score: 155
Period size: 49 Copynumber: 3.4 Consensus size: 50
23199248 TCTCGATATT
* * * *
23199258 TGGCTCTCACGAGCTTTTCGTTTAGTGGCTCTCTTGAGCTTCCC-ATTTA
1 TGGCTCTCATGAGCTTTCCGATTAATGGCTCTCTTGAGCTTCCCAATTTA
**
23199307 TGGCTCAT-ATGAGC-TTCCTGA-TAATTGGCTC-CCGGAGCTTCCCAATATT-
1 TGGCTC-TCATGAGCTTTCC-GATTAA-TGGCTCTCTTGAGCTTCCCAAT-TTA
* *
23199356 TGGCTCTCATGAGCTTCCCGATTAATGGCTCTCTTGAGCTTCCCGA-TTA
1 TGGCTCTCATGAGCTTTCCGATTAATGGCTCTCTTGAGCTTCCCAATTTA
*
23199405 TGGCTTTCATGAG-TTTC
1 TGGCTCTCATGAGCTTTC
23199422 TCGTAACATG
Statistics
Matches: 93, Mismatches: 12, Indels: 21
0.74 0.10 0.17
Matches are distributed among these distances:
48 21 0.23
49 52 0.56
50 20 0.22
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (50 bp):
TGGCTCTCATGAGCTTTCCGATTAATGGCTCTCTTGAGCTTCCCAATTTA
Found at i:23199417 original size:24 final size:24
Alignment explanation
Indices: 23199258--23199446 Score: 132
Period size: 25 Copynumber: 7.7 Consensus size: 24
23199248 TCTCGATATT
* ** *
23199258 TGGCTCTCACGAGCTTTTCGTTTA
1 TGGCTCTCATGAGCTTCCCGATTA
*
23199282 GTGGCTCTCTTGAGCTTCCC-ATTTA
1 -TGGCTCTCATGAGCTTCCCGA-TTA
* *
23199307 TGGCTCAT-ATGAGCTTCCTGATAA
1 TGGCTC-TCATGAGCTTCCCGATTA
** * *
23199331 TTGGCTC-CCGGAGCTTCCCAATATT
1 -TGGCTCTCATGAGCTTCCCGAT-TA
23199356 TGGCTCTCATGAGCTTCCCGATTAA
1 TGGCTCTCATGAGCTTCCCGATT-A
*
23199381 TGGCTCTCTTGAGCTTCCCGATTA
1 TGGCTCTCATGAGCTTCCCGATTA
* * * **
23199405 TGGCTTTCATGAGTTTCTCGTAACA
1 TGGCTCTCATGAGCTTCCCG-ATTA
*
23199430 TGGCTCACATGAGCTTC
1 TGGCTCTCATGAGCTTC
23199447 TTGTTATATG
Statistics
Matches: 127, Mismatches: 28, Indels: 18
0.73 0.16 0.10
Matches are distributed among these distances:
24 51 0.40
25 76 0.60
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (24 bp):
TGGCTCTCATGAGCTTCCCGATTA
Found at i:23199457 original size:25 final size:24
Alignment explanation
Indices: 23199429--23199500 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
23199419 TTCTCGTAAC
23199429 ATGGCTCACATGAGCTTCTTGTTAT
1 ATGGCTCACATGAGCTTCTTGTT-T
* * **
23199454 ATGGCTCGA-AAGAGCTACCCGTTT
1 ATGGCTC-ACATGAGCTTCTTGTTT
23199478 ATGTGCTCACATGAGCATTCTTG
1 ATG-GCTCACATGAGC-TTCTTG
23199501 AATATGAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
24 5 0.14
25 26 0.74
26 4 0.11
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (24 bp):
ATGGCTCACATGAGCTTCTTGTTT
Found at i:23202035 original size:13 final size:14
Alignment explanation
Indices: 23202016--23202053 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
23202006 CAATGGCATA
23202016 GAAATAATATAAAC
1 GAAATAATATAAAC
23202030 -AAATAA-ATAAAC
1 GAAATAATATAAAC
23202042 GAAACTAATATA
1 GAAA-TAATATA
23202054 CATAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:23202444 original size:29 final size:29
Alignment explanation
Indices: 23202412--23202479 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 29
23202402 ATACATGTAC
*
23202412 ATATAAAATATATTAAAAATAATTAAATA
1 ATATAAAATATATCAAAAATAATTAAATA
* * *
23202441 ATATCTACAT-TATCAAAATTAATTAAATA
1 ATAT-AAAATATATCAAAAATAATTAAATA
*
23202470 A-AAAAAATAT
1 ATATAAAATAT
23202480 GTGTATCTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
27 3 0.10
28 2 0.07
29 22 0.73
30 3 0.10
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (29 bp):
ATATAAAATATATCAAAAATAATTAAATA
Found at i:23203859 original size:18 final size:18
Alignment explanation
Indices: 23203832--23203872 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
23203822 ACGAATAATT
23203832 AATAAATACAAATAAG-C
1 AATAAATACAAATAAGAC
*
23203849 AATACAATACACATAAGAC
1 AATA-AATACAAATAAGAC
23203868 AATAA
1 AATAA
23203873 GCTCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.63, C:0.15, G:0.05, T:0.17
Consensus pattern (18 bp):
AATAAATACAAATAAGAC
Found at i:23204052 original size:14 final size:14
Alignment explanation
Indices: 23204033--23204059 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23204023 CATATATGTA
23204033 TAATAAAAATAGTT
1 TAATAAAAATAGTT
23204047 TAATAAAAATAGT
1 TAATAAAAATAGT
23204060 ATATCTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
TAATAAAAATAGTT
Found at i:23205857 original size:50 final size:50
Alignment explanation
Indices: 23205513--23205862 Score: 167
Period size: 50 Copynumber: 7.0 Consensus size: 50
23205503 TTTCAGTCTA
* *
23205513 TTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGT-AGCTTTAATCTG
1 TTTAACTGCAATGTCGGGGAAACTAGATTCGCCGTTGTGA-CTTTAATCTG
** ** ** * * * *
23205563 TTCCACTGCACCGTCAAGGAAGTAC-A-ATTCGCCGTTATGGCTTCAATCTA
1 TTTAACTGCAATGTCGGGGAA--ACTAGATTCGCCGTTGTGACTTTAATCTG
* * * * * * *
23205613 TTTAATTGCAATATCAGGGAAACAAGATTCGCCATCGTGGCTTTAATCTG
1 TTTAACTGCAATGTCGGGGAAACTAGATTCGCCGTTGTGACTTTAATCTG
** * ** ** * * * *
23205663 TTCCACTACACCG-CCAGGAAAGTAAGATTCGCTGTTGT-AGCTTGAATCTT
1 TTTAACTGCAATGTCGGGGAAACT-AGATTCGCCGTTGTGA-CTTTAATCTG
*
23205713 TTTAACTGCAATGTCGGGGAAAC-AGGATTCGCCGTTATGACTTTAATCTG
1 TTTAACTGCAATGTCGGGGAAACTA-GATTCGCCGTTGTGACTTTAATCTG
** * * ** * * * * * * *
23205763 TTCCATTACACCGCCTGGG-AAGTAAGATTTGCTGTT-TTAGCTTTAATCTT
1 TTTAACTGCAATGTCGGGGAAACT-AGATTCGCCGTTGTGA-CTTTAATCTG
*
23205813 TTTAACTGCAATGTCGGGGAAACTAGATTCGCCATTGTGACTTTAATCTG
1 TTTAACTGCAATGTCGGGGAAACTAGATTCGCCGTTGTGACTTTAATCTG
23205863 CTCCACCACA
Statistics
Matches: 206, Mismatches: 79, Indels: 30
0.65 0.25 0.10
Matches are distributed among these distances:
48 2 0.01
49 12 0.06
50 176 0.85
51 14 0.07
52 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (50 bp):
TTTAACTGCAATGTCGGGGAAACTAGATTCGCCGTTGTGACTTTAATCTG
Found at i:23205882 original size:100 final size:100
Alignment explanation
Indices: 23205504--23205890 Score: 454
Period size: 100 Copynumber: 3.9 Consensus size: 100
23205494 ATCCACCATT
* * * *
23205504 TTCAGTCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGT-AGCTTTAATCTGTTCCA
1 TTCAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCGCCATTGTGA-CTTTAATCTGTTCCA
* * * * *
23205568 CTGCACCGTCAAGGAAGTACA-ATTCGCCGTTATGGC
65 CTACACCGCCAGGGAAGTA-AGATTCGCTGTTATAGC
* * * * * *
23205604 TTCAATCTATTTAATTGCAATATCAGGGAAACAAGATTCGCCATCGTGGCTTTAATCTGTTCCAC
1 TTCAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCGCCATTGTGACTTTAATCTGTTCCAC
* *
23205669 TACACCGCCAGGAAAGTAAGATTCGCTGTTGTAGC
66 TACACCGCCAGGGAAGTAAGATTCGCTGTTATAGC
* * * * *
23205704 TTGAATCTTTTTAACTGCAATGTCGGGGAAACAGGATTCGCCGTTATGACTTTAATCTGTTCCAT
1 TTCAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCGCCATTGTGACTTTAATCTGTTCCAC
* * *
23205769 TACACCGCCTGGGAAGTAAGATTTGCTGTTTTAGC
66 TACACCGCCAGGGAAGTAAGATTCGCTGTTATAGC
* * *
23205804 TTTAATCTTTTTAACTGCAATGTCGGGGAAACTAGATTCGCCATTGTGACTTTAATCTGCTCCAC
1 TTCAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCGCCATTGTGACTTTAATCTGTTCCAC
* * **
23205869 CACATCGCTTGGGAAGTAAGAT
66 TACACCGCCAGGGAAGTAAGAT
23205891 CTATAATTCT
Statistics
Matches: 245, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
99 1 0.00
100 244 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (100 bp):
TTCAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCGCCATTGTGACTTTAATCTGTTCCAC
TACACCGCCAGGGAAGTAAGATTCGCTGTTATAGC
Found at i:23206169 original size:132 final size:131
Alignment explanation
Indices: 23206025--23206348 Score: 569
Period size: 132 Copynumber: 2.5 Consensus size: 131
23206015 ATAGGATAAT
23206025 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCC-CCATCTTTGATCTGCTCCACT
23206090 ACTGCTT-AGAGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAAT
65 ACTGCTTAAG-GAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAAT
23206154 TAC
129 TAC
* *
23206157 TGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCCCTATCTTTGATCTACTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCCC-ATCTTTGATCTGCTCCACT
23206222 ACTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATT
65 ACTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATT
23206287 AC
130 AC
* *
23206289 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATC-CCCATCTTTGATCTGCT
23206349 TTGCCGTCAG
Statistics
Matches: 183, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
131 2 0.01
132 177 0.97
133 4 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (131 bp):
TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCCCATCTTTGATCTGCTCCACTA
CTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTA
C
Found at i:23206176 original size:43 final size:43
Alignment explanation
Indices: 23206117--23206309 Score: 115
Period size: 44 Copynumber: 4.4 Consensus size: 43
23206107 GATCTGAAAT
*
23206117 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATTACTGG
* * * * * ** **
23206160 CTTTAATGTACTCCACTG-TAACCACAGGGAGGTAAAATCCCCTAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAGATAGAAT-TACTGG
** * ** * * *
23206205 CTTTGATCTACTCCACTACTGCTTAAGGAGACA-AGA-T-CTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGA-ATTACTG---G
*
23206249 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATTACTGG
*
23206292 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
23206310 TAACCACAGG
Statistics
Matches: 107, Mismatches: 32, Indels: 22
0.66 0.20 0.14
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 34 0.32
44 46 0.43
45 20 0.19
46 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATTACTGG
Found at i:23206460 original size:87 final size:89
Alignment explanation
Indices: 23206360--23206559 Score: 334
Period size: 87 Copynumber: 2.3 Consensus size: 89
23206350 TGCCGTCAGT
*
23206360 ACAGGAAGGCAAGATCTGCTATCTTT-AACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTG
1 ACAGGAAGGCAAGATCTGCTATCTTTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGGG
23206424 TCTTCGATCTGCTTCA-GGTCTAC
66 TCTTCGATCTGCTTCACGGTCTAC
*
23206447 ACAGGAAGGCAAGATCTGCTAT-TTTCAACCTGCTCCACTGCAACTGAGGGAGGCAAGGCTGGGG
1 ACAGGAAGGCAAGATCTGCTATCTTTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGGG
* *
23206511 TCTTCGATCTGCTTCACTGTCTAT
66 TCTTCGATCTGCTTCACGGTCTAC
*
23206535 GCAGGAAGGCAAGATCTGCTATCTT
1 ACAGGAAGGCAAGATCTGCTATCTT
23206560 CACTGATCTG
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
86 3 0.03
87 74 0.70
88 26 0.25
89 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (89 bp):
ACAGGAAGGCAAGATCTGCTATCTTTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGGG
TCTTCGATCTGCTTCACGGTCTAC
Found at i:23206501 original size:44 final size:44
Alignment explanation
Indices: 23206366--23206503 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
23206356 CAGTACAGGA
*
23206366 AGGCAAGATCTGCTATCTTT-AACCTGCTCCACTGCAACCGAGGG
1 AGGCAAGATCTGCTAT-TTTCAACCTGCTCCACTGCAACAGAGGG
* * * * * * * * * * *
23206410 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCA-GGTCTACACAGGA
1 AGGCAAGATCTGCTATTTTCAACCTGCTCCACTG-CAACAGAGGG
*
23206453 AGGCAAGATCTGCTATTTTCAACCTGCTCCACTGCAACTGAGGG
1 AGGCAAGATCTGCTATTTTCAACCTGCTCCACTGCAACAGAGGG
23206497 AGGCAAG
1 AGGCAAG
23206504 GCTGGGGTCT
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
42 3 0.05
43 26 0.39
44 36 0.55
45 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTCAACCTGCTCCACTGCAACAGAGGG
Found at i:23206529 original size:43 final size:43
Alignment explanation
Indices: 23206389--23206529 Score: 122
Period size: 43 Copynumber: 3.3 Consensus size: 43
23206379 TATCTTTAAC
*
23206389 CTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTCTTCGAT
1 CTGCTCCACTGCAACAGAGGGAGGCAAGGCTGGTGTCTTCGAT
* * * * * * * * * * *
23206432 CTGCTTCA-GGTCTACACAGGAAGGCAAGATCTGCTATTTTCAAC
1 CTGCTCCACTG-CAACAGAGGGAGGCAAG-GCTGGTGTCTTCGAT
* *
23206476 CTGCTCCACTGCAACTGAGGGAGGCAAGGCTGGGGTCTTCGAT
1 CTGCTCCACTGCAACAGAGGGAGGCAAGGCTGGTGTCTTCGAT
*
23206519 CTGCTTCACTG
1 CTGCTCCACTG
23206530 TCTATGCAGG
Statistics
Matches: 69, Mismatches: 26, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
42 1 0.01
43 38 0.55
44 29 0.42
45 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (43 bp):
CTGCTCCACTGCAACAGAGGGAGGCAAGGCTGGTGTCTTCGAT
Found at i:23206545 original size:44 final size:44
Alignment explanation
Indices: 23206410--23206547 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
23206400 CAACCGAGGG
* **
23206410 AGGCAAGGCTGGTGTCTTCGATCTGCTTCA-GGTCTACACAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCTATGCAGGA
* * * * * * * * *
23206453 AGGCAAGATCTGCTATTTTCAACCTGCTCCACTG-CAACTG-AGGG
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCACTGTCTA-TGCAGGA
*
23206497 AGGCAAGGCTGGGGTCTTCGATCTGCTTCACTGTCTATGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCTATGCAGGA
23206541 AGGCAAG
1 AGGCAAG
23206548 ATCTGCTATC
Statistics
Matches: 68, Mismatches: 22, Indels: 9
0.69 0.22 0.09
Matches are distributed among these distances:
43 27 0.40
44 40 0.59
45 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (44 bp):
AGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCTATGCAGGA
Found at i:23209299 original size:25 final size:25
Alignment explanation
Indices: 23209249--23209314 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
23209239 AAGAAAGTTC
*
23209249 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
*
23209274 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
23209299 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
23209315 TGTATTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 3 0.08
25 23 0.64
26 5 0.14
27 5 0.14
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:23212812 original size:28 final size:28
Alignment explanation
Indices: 23212744--23212897 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
23212734 CATGAGATTG
* * * *
23212744 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
23212773 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23212801 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
23212829 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23212857 GCACTAAGTGTGCGAG-TTGATTGTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23212884 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
23212898 GACTTAATAT
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23216362 original size:29 final size:29
Alignment explanation
Indices: 23216330--23216396 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 29
23216320 ATACATGTAC
*
23216330 ATATAAAATATATTAAAAATAATTAAATA
1 ATATAAAATATATCAAAAATAATTAAATA
* * *
23216359 ATATCTACAT-TATCAAAATTAATTAAATA
1 ATAT-AAAATATATCAAAAATAATTAAATA
23216388 A-A-AAAATAT
1 ATATAAAATAT
23216397 GTGTATCTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
26 3 0.10
27 1 0.03
28 1 0.03
29 22 0.73
30 3 0.10
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (29 bp):
ATATAAAATATATCAAAAATAATTAAATA
Found at i:23217775 original size:18 final size:18
Alignment explanation
Indices: 23217748--23217788 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
23217738 ACGAATAATT
23217748 AATAAATACAAATAAG-C
1 AATAAATACAAATAAGAC
*
23217765 AATACAATACACATAAGAC
1 AATA-AATACAAATAAGAC
23217784 AATAA
1 AATAA
23217789 GCTCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.63, C:0.15, G:0.05, T:0.17
Consensus pattern (18 bp):
AATAAATACAAATAAGAC
Found at i:23217967 original size:14 final size:14
Alignment explanation
Indices: 23217948--23217974 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23217938 CATATATGTA
23217948 TAATAAAAATAGTT
1 TAATAAAAATAGTT
23217962 TAATAAAAATAGT
1 TAATAAAAATAGT
23217975 ATAACTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
TAATAAAAATAGTT
Found at i:23228231 original size:15 final size:14
Alignment explanation
Indices: 23228202--23228235 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
23228192 ATTTTAGTTG
*
23228202 ATAAAGAAAATAAA
1 ATAAACAAAATAAA
23228216 ATAAACAAATATAAA
1 ATAAACAAA-ATAAA
23228231 ATAAA
1 ATAAA
23228236 ATAAAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (14 bp):
ATAAACAAAATAAA
Found at i:23230210 original size:20 final size:20
Alignment explanation
Indices: 23230155--23230217 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
23230145 GCTTGTACAG
* *
23230155 GTTTGCACTTCGGTGCTTCT
1 GTTTGCACTTTGGTGCCTCT
* *
23230175 GATTGCA-TATTTGTGCCTCT
1 GTTTGCACT-TTGGTGCCTCT
23230195 GTTTGCACTTTGGTGCCTCT
1 GTTTGCACTTTGGTGCCTCT
23230215 GTT
1 GTT
23230218 AAGTGTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.08, C:0.22, G:0.24, T:0.46
Consensus pattern (20 bp):
GTTTGCACTTTGGTGCCTCT
Found at i:23233767 original size:21 final size:20
Alignment explanation
Indices: 23233727--23233768 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
23233717 AAAATTCAAT
23233727 ATTTTAATTATTTAAATTAA
1 ATTTTAATTATTTAAATTAA
23233747 ATTTT-ATTATTTTATAATTAA
1 ATTTTAATTA-TTTA-AATTAA
23233768 A
1 A
23233769 ATATGAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 9 0.45
21 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTAATTATTTAAATTAA
Found at i:23235724 original size:3 final size:3
Alignment explanation
Indices: 23235716--23235753 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23235706 CTCTGTGGGA
23235716 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
23235754 GAGATCCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:23240191 original size:24 final size:24
Alignment explanation
Indices: 23240164--23240212 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
23240154 TTTCTCTCGA
23240164 TTTCAC-CTCAGACACTCTTTTCTT
1 TTTCACTCTC-GACACTCTTTTCTT
* *
23240188 TTTCACTCTCGACATTTTTTTCTT
1 TTTCACTCTCGACACTCTTTTCTT
23240212 T
1 T
23240213 CGCTTTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.14, C:0.29, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTCACTCTCGACACTCTTTTCTT
Found at i:23243449 original size:19 final size:19
Alignment explanation
Indices: 23243425--23243462 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
23243415 ATCGAAAGTT
23243425 TTATTTAATTTA-TATTTTA
1 TTATTT-ATTTACTATTTTA
23243444 TTATTTATTTACTATTTTA
1 TTATTTATTTACTATTTTA
23243463 CCCTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTATTTACTATTTTA
Found at i:23245605 original size:15 final size:13
Alignment explanation
Indices: 23245578--23245624 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 13
23245568 AAAAACATAA
23245578 TTTTCCTTGAATTT
1 TTTTCC-TGAATTT
23245592 TTTTCTCATGAATTT
1 TTTTC-C-TGAATTT
23245607 TTTTCCTAGAATTT
1 TTTTCCT-GAATTT
23245621 TTTT
1 TTTT
23245625 AGAATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 1 0.03
14 16 0.53
15 13 0.43
ACGTcount: A:0.17, C:0.13, G:0.06, T:0.64
Consensus pattern (13 bp):
TTTTCCTGAATTT
Found at i:23245607 original size:14 final size:13
Alignment explanation
Indices: 23245585--23245635 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
23245575 TAATTTTCCT
23245585 TGAATTTTTTTCTCA
1 TGAA-TTTTTT-TCA
*
23245600 TGAATTTTTTTCC
1 TGAATTTTTTTCA
23245613 TAGAATTTTTTT-A
1 T-GAATTTTTTTCA
23245626 -GAATTTTTTT
1 TGAATTTTTTT
23245636 AGAATCTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 10 0.30
13 3 0.09
14 16 0.48
15 4 0.12
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.63
Consensus pattern (13 bp):
TGAATTTTTTTCA
Found at i:23245627 original size:11 final size:11
Alignment explanation
Indices: 23245613--23245640 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
23245603 ATTTTTTTCC
23245613 TAGAATTTTTT
1 TAGAATTTTTT
23245624 TAGAATTTTTT
1 TAGAATTTTTT
23245635 TAGAAT
1 TAGAAT
23245641 CTCAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (11 bp):
TAGAATTTTTT
Found at i:23257749 original size:14 final size:14
Alignment explanation
Indices: 23257732--23257773 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
23257722 ATCGAAATTC
23257732 ACATTAATTTTTCA
1 ACATTAATTTTTCA
*
23257746 ACATTAATTTTCCA
1 ACATTAATTTTTCA
23257760 A-ATTAATTTTTCA
1 ACATTAATTTTTCA
23257773 A
1 A
23257774 GAAAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (14 bp):
ACATTAATTTTTCA
Found at i:23263181 original size:36 final size:36
Alignment explanation
Indices: 23263141--23263209 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
23263131 CAATCCAACC
* *
23263141 AAACACAATAGATGCTCACACGAGCTAATCCCTTTA
1 AAACACAACAGATGCTCACACGAGCCAATCCCTTTA
*
23263177 AAACACACCAGATGCTCACACGAGCCAATCCCT
1 AAACACAACAGATGCTCACACGAGCCAATCCCT
23263210 CCAACACACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.38, C:0.33, G:0.12, T:0.17
Consensus pattern (36 bp):
AAACACAACAGATGCTCACACGAGCCAATCCCTTTA
Found at i:23266163 original size:31 final size:32
Alignment explanation
Indices: 23266125--23266186 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
23266115 GTTTTTAGAT
*
23266125 AAATTTGACCCCCAACCTTT-AAAAAAGAGTA
1 AAATTTGACCACCAACCTTTAAAAAAAGAGTA
23266156 AAATTTGACCACCAACCTTTAAAAAAAGAGT
1 AAATTTGACCACCAACCTTTAAAAAAAGAGT
23266187 TGAATTGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 19 0.66
32 10 0.34
ACGTcount: A:0.47, C:0.21, G:0.10, T:0.23
Consensus pattern (32 bp):
AAATTTGACCACCAACCTTTAAAAAAAGAGTA
Found at i:23272417 original size:17 final size:17
Alignment explanation
Indices: 23272391--23272480 Score: 74
Period size: 17 Copynumber: 5.1 Consensus size: 17
23272381 GAAAGAAAAC
23272391 ATAA-TTTATTATTTTT
1 ATAATTTTATTATTTTT
23272407 ATAATTTTATTATTTATT
1 ATAATTTTATTATTT-TT
* * *
23272425 ATGACTTTAATTAACTTTT
1 AT-AATTTTATT-ATTTTT
* * *
23272444 ATATTTTTATAAATTTT
1 ATAATTTTATTATTTTT
23272461 ATAATTTTAATTAATTTTT
1 ATAATTTT-ATT-ATTTTT
23272480 A
1 A
23272481 ATGATTTTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
16 4 0.07
17 22 0.38
18 12 0.21
19 17 0.29
20 3 0.05
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (17 bp):
ATAATTTTATTATTTTT
Found at i:23272470 original size:36 final size:36
Alignment explanation
Indices: 23272403--23272498 Score: 111
Period size: 36 Copynumber: 2.6 Consensus size: 36
23272393 AATTTATTAT
* * *
23272403 TTTTATAATTTTATTATTTATTATGACTTTAATTAAC
1 TTTTATATTTTTATAATTT-TTATAACTTTAATTAAC
* * *
23272440 TTTTATATTTTTATAAATTTTATAATTTTAATTAAT
1 TTTTATATTTTTATAATTTTTATAACTTTAATTAAC
23272476 TTTTAATGATTTTTATAATTTTT
1 TTTT-AT-ATTTTTATAATTTTT
23272499 TATGTTTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 18 0.36
37 18 0.36
38 14 0.28
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (36 bp):
TTTTATATTTTTATAATTTTTATAACTTTAATTAAC
Found at i:23272481 original size:11 final size:10
Alignment explanation
Indices: 23272446--23272498 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 10
23272436 TAACTTTTAT
23272446 ATTTTT-ATA
1 ATTTTTAATA
*
23272455 AATTTT-ATA
1 ATTTTTAATA
23272464 A-TTTTAATTA
1 ATTTTTAA-TA
*
23272474 ATTTTTAATG
1 ATTTTTAATA
23272484 ATTTTT-ATA
1 ATTTTTAATA
23272493 ATTTTT
1 ATTTTT
23272499 TATGTTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
8 4 0.11
9 18 0.47
10 10 0.26
11 6 0.16
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
ATTTTTAATA
Done.