Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 81 of 207
Found at i:23514528 original size:93 final size:94
Alignment explanation
Indices: 23514369--23514888 Score: 866
Period size: 93 Copynumber: 5.5 Consensus size: 94
23514359 CCCTTCGGGA
* * * * * * * **
23514369 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC-CGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514433 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
23514462 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514526 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
23514555 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
23514619 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
23514648 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514713 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
23514742 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
23514807 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
23514838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
23514889 CTATCATTTC
Statistics
Matches: 403, Mismatches: 19, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
92 25 0.06
93 164 0.41
94 122 0.30
96 92 0.23
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:23514548 original size:47 final size:47
Alignment explanation
Indices: 23514369--23514888 Score: 866
Period size: 47 Copynumber: 11.1 Consensus size: 47
23514359 CCCTTCGGGA
* * * * * * *
23514369 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
23514416 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23514462 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23514508 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23514555 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23514601 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23514648 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23514695 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23514742 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23514791 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23514838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23514885 CTTA
1 CTTA
23514889 CTATCATTTC
Statistics
Matches: 449, Mismatches: 19, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 128 0.29
47 276 0.61
49 45 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23514635 original size:140 final size:141
Alignment explanation
Indices: 23514369--23514888 Score: 875
Period size: 140 Copynumber: 3.7 Consensus size: 141
23514359 CCCTTCGGGA
* * * * * * * **
23514369 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC-CGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514433 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-TTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
23514497 GGCCATTAGGC
131 GGCTATTAGGC
*
23514508 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514573 TTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
23514637 GGCTATTAGGC
131 GGCTATTAGGC
* * *
23514648 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514713 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
23514778 TCGGCTATTAGGC
129 TCGGCTATTAGGC
23514791 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23514856 TTTCACATTCATCACATCGGCCATTAGGCCTTA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTA
23514889 CTATCATTTC
Statistics
Matches: 358, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
139 65 0.18
140 143 0.40
141 16 0.04
143 134 0.37
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:23523212 original size:139 final size:141
Alignment explanation
Indices: 23523029--23523330 Score: 428
Period size: 139 Copynumber: 2.2 Consensus size: 141
23523019 GATCCGTCAC
* * *
23523029 CTTGGGTTGCCCGGCAACGATGACGATATACATTTACATAATACCATCTCAGATTGCCCAACAAC
1 CTTGGGTTGCCTGGCAACGATGACGATATACATGTACATAATACCACCTCAGATTGCCCAACAAC
* * * *
23523094 GATGGCATTCTCAATCTGATTAATCTGTCA-CCTTGGTTTCCCGACAAAGATGACACACCGAGTA
66 GATGGCATTCTCAATCTGATTAATCTGTCACCCTGGGCTACCCGACAAAGATGACACACCAAGTA
23523158 CAATCTACCAT
131 CAATCTACCAT
* * *
23523169 CTTGGG-TGCCTGGCAACGATGACGCTATACATGTACATAATACCACCTCAGGTTGCCCGACAAC
1 CTTGGGTTGCCTGGCAACGATGACGATATACATGTACATAATACCACCTCAGATTGCCCAACAAC
* * * * * *
23523233 GATGGCTTTCTCAATCTGATTAATTTGTCACCCTGGGCTACCCGACCAAGATGACTCACTAATTA
66 GATGGCATTCTCAATCTGATTAATCTGTCACCCTGGGCTACCCGACAAAGATGACACACCAAGTA
23523298 CAATCTACCAT
131 CAATCTACCAT
* *
23523309 CCTGGGTTGCCTAGCAACGATG
1 CTTGGGTTGCCTGGCAACGATG
23523331 GTTATCAATC
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
139 80 0.56
140 48 0.34
141 14 0.10
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (141 bp):
CTTGGGTTGCCTGGCAACGATGACGATATACATGTACATAATACCACCTCAGATTGCCCAACAAC
GATGGCATTCTCAATCTGATTAATCTGTCACCCTGGGCTACCCGACAAAGATGACACACCAAGTA
CAATCTACCAT
Found at i:23527757 original size:19 final size:19
Alignment explanation
Indices: 23527731--23527769 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
23527721 AAATATAGAG
*
23527731 AAATTTGAGAG-AAATAAT
1 AAATTTGAAAGAAAATAAT
23527749 AAATATTGAAAGAAAATAAT
1 AAAT-TTGAAAGAAAATAAT
23527769 A
1 A
23527770 GGGGGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (19 bp):
AAATTTGAAAGAAAATAAT
Found at i:23530383 original size:27 final size:27
Alignment explanation
Indices: 23530352--23530406 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
23530342 AATGATCAAA
23530352 TCTGAAACACATTTTAGCAATGAATAG
1 TCTGAAACACATTTTAGCAATGAATAG
23530379 TCTGAAACACATTTTAGCAATGAATAG
1 TCTGAAACACATTTTAGCAATGAATAG
23530406 T
1 T
23530407 TACACAAGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (27 bp):
TCTGAAACACATTTTAGCAATGAATAG
Found at i:23532234 original size:45 final size:45
Alignment explanation
Indices: 23532170--23532344 Score: 235
Period size: 45 Copynumber: 3.9 Consensus size: 45
23532160 CTTTCCTTTC
** * * *
23532170 TGGCTGTGCAGCCTTTTTGGAATGACTCTCATCAGGAACAGTCTT
1 TGGCTGTGCAGCCTTTTCAGAATGACTCTCATCAGGTATACTCTT
* ** * *
23532215 TGGCTGTGCTGCCTTTTTGGATTGACTCTCATCAGGTATACTTTT
1 TGGCTGTGCAGCCTTTTCAGAATGACTCTCATCAGGTATACTCTT
23532260 TGGCTGTGCAGCCTTTTCAG-ATCGACTCTCATCAGGTATACTCTT
1 TGGCTGTGCAGCCTTTTCAGAAT-GACTCTCATCAGGTATACTCTT
*
23532305 TGGCTGAGCAGCCTTTTCAGAATGACTCTCATCAGGTATA
1 TGGCTGTGCAGCCTTTTCAGAATGACTCTCATCAGGTATA
23532345 GACCCACTTG
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 1 0.01
45 113 0.97
46 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (45 bp):
TGGCTGTGCAGCCTTTTCAGAATGACTCTCATCAGGTATACTCTT
Found at i:23533129 original size:47 final size:48
Alignment explanation
Indices: 23533072--23533167 Score: 142
Period size: 47 Copynumber: 2.0 Consensus size: 48
23533062 ATTAAGGAGA
23533072 ATAAAGCAGTTATAACTTCAATGAAG-A-CATAACAGATTTTATTAAGC
1 ATAAAGCAGTTATAACTTCAATGAAGAAGCATAACAGATTTTA-TAAGC
* *
23533119 ATAAATCAGTTGTAACTTCAATGAAGAAGGCATAACAGATTTTATAAGC
1 ATAAAGCAGTTATAACTTCAATGAAGAA-GCATAACAGATTTTATAAGC
23533168 CAACAACACA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 24 0.55
48 1 0.02
49 5 0.11
50 14 0.32
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (48 bp):
ATAAAGCAGTTATAACTTCAATGAAGAAGCATAACAGATTTTATAAGC
Found at i:23535199 original size:94 final size:94
Alignment explanation
Indices: 23535036--23535228 Score: 350
Period size: 94 Copynumber: 2.1 Consensus size: 94
23535026 AAAAAGCATC
*
23535036 CACTAACATGCACTAGCGTAAGGTAGAACACAAAGGATATTAAACTATTAGAGTACCTAAAATAC
1 CACTAACATGCACTAGCGTAAGGTAGAACACAAAGGATATTAAACTATTAGAGCACCTAAAATAC
*
23535101 TAAGACAATCAGTCAGTTGTAGCATGATT
66 TAAGACAATCAGTCAGTGGTAGCATGATT
* *
23535130 CACTAACGTGCACTAGCGTAAGGTAGAACACAAAGGATATTAAACTATTAGAGCACCTAAAATAT
1 CACTAACATGCACTAGCGTAAGGTAGAACACAAAGGATATTAAACTATTAGAGCACCTAAAATAC
23535195 TAAGACAATCAGTCAGTGGTAGCATGATT
66 TAAGACAATCAGTCAGTGGTAGCATGATT
23535224 CACTA
1 CACTA
23535229 GTCACGAAAC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (94 bp):
CACTAACATGCACTAGCGTAAGGTAGAACACAAAGGATATTAAACTATTAGAGCACCTAAAATAC
TAAGACAATCAGTCAGTGGTAGCATGATT
Found at i:23540493 original size:24 final size:23
Alignment explanation
Indices: 23540451--23540510 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 23
23540441 ATTAAATTAT
23540451 AAATTTATTTATTAAATTATAAAATA
1 AAATTTA--TATTAAATTAT-AAATA
*
23540477 AAATTTATATTACATTATAAATA
1 AAATTTATATTAAATTATAAATA
23540500 AAATTTCATAT
1 AAATTT-ATAT
23540511 AATTATTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 11 0.34
24 14 0.44
26 7 0.22
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATTTATATTAAATTATAAATA
Found at i:23541183 original size:13 final size:12
Alignment explanation
Indices: 23541147--23541188 Score: 50
Period size: 11 Copynumber: 3.4 Consensus size: 12
23541137 ATCATATTTG
*
23541147 ATTTTTATATCA
1 ATTTTTATATAA
23541159 ATTTTT-TATAA
1 ATTTTTATATAA
23541170 ATTTATTATATAAA
1 ATTT-TTATAT-AA
23541184 ATTTT
1 ATTTT
23541189 CATCCATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 8 0.31
12 8 0.31
13 4 0.15
14 6 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTTTTATATAA
Found at i:23541350 original size:14 final size:14
Alignment explanation
Indices: 23541330--23541368 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
23541320 TTATTTCATT
23541330 AAAAATGATTTCTG
1 AAAAATGATTTCTG
*
23541344 GAAAATGATTTCTG
1 AAAAATGATTTCTG
23541358 AAAAATGATTT
1 AAAAATGATTT
23541369 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (14 bp):
AAAAATGATTTCTG
Found at i:23541849 original size:19 final size:19
Alignment explanation
Indices: 23541811--23541849 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23541801 TTATACTACA
**
23541811 AAATATTTATAATTGTAAT
1 AAATATTTATAATTAAAAT
*
23541830 AAATATTTATTATTAAAAT
1 AAATATTTATAATTAAAAT
23541849 A
1 A
23541850 TTAATGTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
AAATATTTATAATTAAAAT
Found at i:23541915 original size:16 final size:16
Alignment explanation
Indices: 23541884--23541920 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
23541874 ATGTGAATAA
23541884 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
23541900 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
23541916 TATTA
1 TATTA
23541921 AAATAAGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:23541972 original size:22 final size:21
Alignment explanation
Indices: 23541932--23541984 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
23541922 AATAAGATTG
*
23541932 AAATATTAAA-TAATTTATTA
1 AAATAATAAATTAATTTATTA
23541952 AAATAATAAATTATATTTATTA
1 AAATAATAAATTA-ATTTATTA
* *
23541974 TATTAATAAAT
1 AAATAATAAAT
23541985 ATAAATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.32
21 2 0.07
22 17 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATAATAAATTAATTTATTA
Found at i:23559827 original size:106 final size:106
Alignment explanation
Indices: 23559671--23559865 Score: 275
Period size: 106 Copynumber: 1.8 Consensus size: 106
23559661 ATCCAAGGAA
*
23559671 ACAAAGAGAGTTAACACGAGCATAACAACAATAATTCCACTACAATGTAATCGAACCAAATATCA
1 ACAAAGAGAGTTAACACGAGCATAACAACAATAATACCACTACAATGTAATCGAACCAAATATCA
*
23559736 TAAAACTTGTACTCTGATTGGTTGATCTGATATCGGAGAAC
66 TAAAACTTGTACTCTGATCGGTTGATCTGATATCGGAGAAC
** ** * * * *
23559777 ACAAAGAGAGTTAACACGAGCATGTCAACGGTGAA-ACCACTGCAATGTAATTGAGCCAAATTTC
1 ACAAAGAGAGTTAACACGAGCATAACAACAAT-AATACCACTACAATGTAATCGAACCAAATATC
*
23559841 ATAAAATTTGTACTCTGATCGGTTG
65 ATAAAACTTGTACTCTGATCGGTTG
23559866 TTGCGACAAG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
106 75 0.97
107 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (106 bp):
ACAAAGAGAGTTAACACGAGCATAACAACAATAATACCACTACAATGTAATCGAACCAAATATCA
TAAAACTTGTACTCTGATCGGTTGATCTGATATCGGAGAAC
Found at i:23562483 original size:19 final size:19
Alignment explanation
Indices: 23562459--23562497 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
23562449 AATCATATCT
*
23562459 TCTAAGATTGTATATCATA
1 TCTAAGATTATATATCATA
23562478 TCTAAGATTATATATCATA
1 TCTAAGATTATATATCATA
23562497 T
1 T
23562498 GTAACAGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (19 bp):
TCTAAGATTATATATCATA
Found at i:23565103 original size:19 final size:19
Alignment explanation
Indices: 23565079--23565157 Score: 131
Period size: 19 Copynumber: 4.2 Consensus size: 19
23565069 GGGGTGTTAC
23565079 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
**
23565098 ATCATATCTAAGATTATAT
1 ATCATATCTAAGATTGCAT
*
23565117 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
23565136 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
23565155 ATC
1 ATC
23565158 CCTGAAGATT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 54 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:23569400 original size:11 final size:11
Alignment explanation
Indices: 23569384--23569414 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
23569374 TTTAAGGTGA
23569384 GTAATGTAATT
1 GTAATGTAATT
23569395 GTAATGTAATT
1 GTAATGTAATT
*
23569406 GAAATGTAA
1 GTAATGTAA
23569415 AATGTTACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (11 bp):
GTAATGTAATT
Found at i:23572785 original size:16 final size:16
Alignment explanation
Indices: 23572764--23572796 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23572754 AGTCCTTGTA
23572764 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
23572780 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
23572796 A
1 A
23572797 ATAAAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.30, C:0.18, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:23579361 original size:43 final size:43
Alignment explanation
Indices: 23579313--23579457 Score: 152
Period size: 43 Copynumber: 3.4 Consensus size: 43
23579303 CCCATATATA
* * *
23579313 GTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCCATG
1 GTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGACATG
* * *
23579356 GTCTTACACGAAATCACATATCGATGTCAAT-GTCCCAGACATG
1 GTCTTACACGTAATCTCATATCGATGCCAATAG-CCCAGACATG
* * * * *
23579399 GTCTTACATG-AATTATCATATCGATGCC-ATATCCCAAATATG
1 GTCTTACACGTAA-TCTCATATCGATGCCAATAGCCCAGACATG
23579441 GTCTTACACGTAATCTC
1 GTCTTACACGTAATCTC
23579458 GGTAACCCTA
Statistics
Matches: 83, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.30
43 58 0.70
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
GTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGACATG
Found at i:23586700 original size:24 final size:24
Alignment explanation
Indices: 23586662--23586708 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23586652 AGACTGTGTG
*
23586662 CATTTTAAAATTTGGTTTTATTTT
1 CATTTTAAAATTTGGGTTTATTTT
23586686 CATTTATAAAA-TTGGGTTTATTT
1 CATTT-TAAAATTTGGGTTTATTT
23586709 AGGTTTGCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.28, C:0.04, G:0.11, T:0.57
Consensus pattern (24 bp):
CATTTTAAAATTTGGGTTTATTTT
Found at i:23600864 original size:87 final size:87
Alignment explanation
Indices: 23600717--23601833 Score: 1760
Period size: 87 Copynumber: 12.9 Consensus size: 87
23600707 AAGATAGCAG
*
23600717 ATCCTATCTCCCTAAGTAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
*
23600782 AGGAAACGGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* * *
23600804 ATCCTATCTCCCTAAGCAATAGTGGAGTGGATCAAAGACGGCGAATCTCATCTTCTCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
**
23600869 GGGAAACAAATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
*
23600891 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGTGAATCTCATCTTCCCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
23600956 GGGAAACGGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* *
23600978 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACAGCGAATCTCATCTTCCCCAAGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
* *
23601043 AGGAAACAGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* **
23601065 ATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATAGCGAATCTCATCTTCCCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
** *
23601130 GGGAAACATATTTAGAACATTA
66 GGGAAACGGATTTAGACCATTA
* * * *
23601152 ATCCCATCTCCCTAAGCAATAGTGGAGCGTATCGAAGACTGCGAATCTCATCTTCCTCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
23601217 GGGAAACGGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* * * *
23601239 ATTCTATCTCCCTAAGAAATAGTGGAGCGGATCGAAGATGGCGAATCTCATCTTCCACAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
**
23601304 GGGAAACAAATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* *
23601326 ATCCTATCTCCCTGAGCAATAGTGGAGCGGATCGAATACGGCGAATCTCATCTTCCCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
*
23601391 GGGAAACGGATTTATACCATTA
66 GGGAAACGGATTTAGACCATTA
* *
23601413 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGTGAATCTCATCTTCCCCAAGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
**
23601478 GGGAAACATATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* *
23601500 ATCCCATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCACAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
*
23601565 GGGAAACGAATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* * *
23601587 ATCCTATCTTCCTAAGCAATAGTGGAGCAGATCGAAAACGGCGAATCTCATCTTCCCCAGGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
23601652 --G----GGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* *
23601668 ATCCCATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCATGAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
23601733 GGGAAACGGATTTAGACCATTA
66 GGGAAACGGATTTAGACCATTA
* * * *
23601755 ATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCAAATCTCATATTCCCCAGGAATA
1 ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
*
23601820 GGGAAACAGATTTA
66 GGGAAACGGATTTA
23601834 AGCCACAAAT
Statistics
Matches: 942, Mismatches: 82, Indels: 12
0.91 0.08 0.01
Matches are distributed among these distances:
81 74 0.08
83 1 0.00
85 1 0.00
87 866 0.92
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (87 bp):
ATCCTATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTA
GGGAAACGGATTTAGACCATTA
Found at i:23605680 original size:22 final size:21
Alignment explanation
Indices: 23605636--23605680 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
23605626 ACTAAAATTG
*
23605636 AATTATAATTTTTTATATATT
1 AATTATAATTTTTTAGATATT
* *
23605657 AATTTTAATTTTTTTAGATTTT
1 AATTATAA-TTTTTTAGATATT
23605679 AA
1 AA
23605681 AAGGGGTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
AATTATAATTTTTTAGATATT
Found at i:23606446 original size:31 final size:31
Alignment explanation
Indices: 23606408--23606470 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
23606398 TTAACAAAGT
**
23606408 AGTGACTTGGATAAAAACTTTCAAATAGTTC
1 AGTGACTTAAATAAAAACTTTCAAATAGTTC
**
23606439 AGTGACTTAAATAAAAACTTTTGAATAGTTC
1 AGTGACTTAAATAAAAACTTTCAAATAGTTC
23606470 A
1 A
23606471 ATAATCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.33
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACTTTCAAATAGTTC
Found at i:23608873 original size:20 final size:20
Alignment explanation
Indices: 23608848--23608886 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23608838 TACTTATAAT
*
23608848 ATTTATTATTTTATAAAATC
1 ATTTATTATCTTATAAAATC
*
23608868 ATTTATTATCTTGTAAAAT
1 ATTTATTATCTTATAAAAT
23608887 AATATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTATTATCTTATAAAATC
Found at i:23609927 original size:17 final size:17
Alignment explanation
Indices: 23609902--23609963 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
23609892 ACACATTTAT
*
23609902 ATAATATTCATCATCAA
1 ATAACATTCATCATCAA
* *
23609919 ATAACATTCA-CTATTTAT
1 ATAACATTCATC-A-TCAA
*
23609937 ATAATATTCATCATCAA
1 ATAACATTCATCATCAA
23609954 ATAACATTCA
1 ATAACATTCA
23609964 CTTTAATTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
16 1 0.03
17 21 0.60
18 12 0.34
19 1 0.03
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAACATTCATCATCAA
Found at i:23609935 original size:35 final size:35
Alignment explanation
Indices: 23609896--23609965 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
23609886 AATAAAACAC
23609896 ATTTATATAATATTCATCATCAAATAACATTCACT
1 ATTTATATAATATTCATCATCAAATAACATTCACT
23609931 ATTTATATAATATTCATCATCAAATAACATTCACT
1 ATTTATATAATATTCATCATCAAATAACATTCACT
23609966 TTAATTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (35 bp):
ATTTATATAATATTCATCATCAAATAACATTCACT
Found at i:23614127 original size:25 final size:22
Alignment explanation
Indices: 23614071--23614123 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
23614061 TTTTCTTTTC
23614071 TTTATT-TCATTTACTTTTTTAT
1 TTTATTAT-ATTTACTTTTTTAT
23614093 TTTATTATATTTACTTTTTTA-
1 TTTATTATATTTACTTTTTTAT
23614114 -TTATTATATT
1 TTTATTATATT
23614124 ATATATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.33
22 19 0.63
23 1 0.03
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTATTATATTTACTTTTTTAT
Found at i:23614144 original size:29 final size:28
Alignment explanation
Indices: 23614089--23614145 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
23614079 ATTTACTTTT
* ***
23614089 TTATTTTATTATATTTACTTTTTTATTA
1 TTATATTATTATATTTACTTAAATATTA
23614117 TTATATTATATATATTTACTTAAATATTA
1 TTATATTAT-TATATTTACTTAAATATTA
23614146 AATAATACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (28 bp):
TTATATTATTATATTTACTTAAATATTA
Found at i:23615744 original size:31 final size:34
Alignment explanation
Indices: 23615688--23615751 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
23615678 ACAAAAAAGA
**
23615688 CAAAATGATTTGAACTCTAAATTGACCT-AAATC
1 CAAAATGATCCGAACTCTAAATTGACCTGAAATC
23615721 CAAAATGATCCGAAC-C-AAATTGACCTGAAAT
1 CAAAATGATCCGAACTCTAAATTGACCTGAAAT
23615752 TTTTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 10 0.36
32 5 0.18
33 13 0.46
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (34 bp):
CAAAATGATCCGAACTCTAAATTGACCTGAAATC
Found at i:23620637 original size:32 final size:33
Alignment explanation
Indices: 23620600--23620666 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 33
23620590 CTTTAGGGAT
* *
23620600 TTAAGTTTTTGTTACATG-ATTTTAGGAATAAG
1 TTAAGTGTTTGTGACATGTATTTTAGGAATAAG
* * *
23620632 TTAAGTGTTTGTGGCATGTTTTTTAGGAGTAAG
1 TTAAGTGTTTGTGACATGTATTTTAGGAATAAG
23620665 TT
1 TT
23620667 TTGCAGGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.25, C:0.03, G:0.24, T:0.48
Consensus pattern (33 bp):
TTAAGTGTTTGTGACATGTATTTTAGGAATAAG
Found at i:23620895 original size:410 final size:407
Alignment explanation
Indices: 23620098--23620915 Score: 1496
Period size: 410 Copynumber: 2.0 Consensus size: 407
23620088 GATAACAAAT
*
23620098 CCTATTAAGACAACCAGTGTTTTTAATATAGATGTTGAGGATGTGCCTTAGACTTGCTTAATAAT
1 CCTATTAAGACAACCAGTGTTTTTAATATAGATGTTGAGGATGTGCCTTAGACTTGCTTAATAAC
23620163 ATGTCTGTAGACCAGGTCTTTAGGGATTTAAGTTTTTGTTACATGATTTAGGAATAAGTTAAGTG
66 ATGTCTGTAGACCAGGTCTTTAGGGATTTAAGTTTTTGTTACATGATTTAGGAATAAGTTAAGTG
23620228 TTTGTGACATGTTTTTTTAGGAGTAAGTTTTGCAGGTTTTTGTTATTTTTTTTGCTATATAATAT
131 TTTGTGACATGTTTTTTTAGGAGTAAGTTTTGCAGGTTTTTGTTATTTTTTTTGCTATATAATAT
* *
23620293 GAACAATACAACAGATTATAGTGTTCTTTCAATATATCTTTCTTTAATATTTTTTGTGTTTTATA
196 GAACAATACAACAAATTATAGTGTTATTTCAATATATCTTTCTTTAATATTTTTTGTGTTTTATA
23620358 TTGTTGCTAAAATACCAACAATTGGTATTAGAGGTTTTCTCTTAAGGGATCTATGAGTTGAGAGA
261 TTGTTGCTAAAATACCAACAATTGGTATTAGAGGTTTTCTCTTAAGGGATCTATGAGTTGAGAGA
23620423 AACAAATAAGCTTTAGACATGGAAGTTGACACAACGTTTTCTCATATTGTTCCATCAATTTTTGA
326 AACAAATAAGCTTTAGACATGGAAGTTGACACAACGTTTTCTCATATTGTTCCATCAATTTTTGA
23620488 TGGTGGTAACTATCAAG
391 TGGTGGTAACTATCAAG
*
23620505 CCTATTAAGACAGCCAGTGTTTTTAATATAGATATTGTTGAGGATGTGCCTTAGACTTGCTTAAT
1 CCTATTAAGACAACCAGTGTTTTTAATATAG--A-TGTTGAGGATGTGCCTTAGACTTGCTTAAT
23620570 AACATGTCTGTAGACCAGGTCTTTAGGGATTTAAGTTTTTGTTACATGATTTTAGGAATAAGTTA
63 AACATGTCTGTAGACCAGGTCTTTAGGGATTTAAGTTTTTGTTACATGA-TTTAGGAATAAGTTA
*
23620635 AGTGTTTGTGGCATG-TTTTTTAGGAGTAAGTTTTGCAGGTTTTTGTTATTTTTTTTGCTATATA
127 AGTGTTTGTGACATGTTTTTTTAGGAGTAAGTTTTGCAGGTTTTTGTTATTTTTTTTGCTATATA
*
23620699 ATATGAACAATTCAACAAATTATAGTGTTATTTCAATATATCTTTCTTTAATATTTTTTGTGTTT
192 ATATGAACAATACAACAAATTATAGTGTTATTTCAATATATCTTTCTTTAATATTTTTTGTGTTT
23620764 TATATTGTTGCTAAAATACCAACAATTGGTATTAGAGGTTTTCTCTTAAGGGATCTATGAGTTGA
257 TATATTGTTGCTAAAATACCAACAATTGGTATTAGAGGTTTTCTCTTAAGGGATCTATGAGTTGA
* *
23620829 GAGAAACACATAAGCTTTAGACATGGAAGTTGACATAACGTTTTCTCATATTGTTCCA-CTAATT
322 GAGAAACAAATAAGCTTTAGACATGGAAGTTGACACAACGTTTTCTCATATTGTTCCATC-AATT
*
23620893 TTTGATGGTGGTAACTGTCAAG
386 TTTGATGGTGGTAACTATCAAG
23620915 C
1 C
23620916 TTGGGTTGTT
Statistics
Matches: 397, Mismatches: 9, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
407 30 0.08
409 2 0.01
410 336 0.85
411 29 0.07
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.42
Consensus pattern (407 bp):
CCTATTAAGACAACCAGTGTTTTTAATATAGATGTTGAGGATGTGCCTTAGACTTGCTTAATAAC
ATGTCTGTAGACCAGGTCTTTAGGGATTTAAGTTTTTGTTACATGATTTAGGAATAAGTTAAGTG
TTTGTGACATGTTTTTTTAGGAGTAAGTTTTGCAGGTTTTTGTTATTTTTTTTGCTATATAATAT
GAACAATACAACAAATTATAGTGTTATTTCAATATATCTTTCTTTAATATTTTTTGTGTTTTATA
TTGTTGCTAAAATACCAACAATTGGTATTAGAGGTTTTCTCTTAAGGGATCTATGAGTTGAGAGA
AACAAATAAGCTTTAGACATGGAAGTTGACACAACGTTTTCTCATATTGTTCCATCAATTTTTGA
TGGTGGTAACTATCAAG
Found at i:23624798 original size:17 final size:18
Alignment explanation
Indices: 23624768--23624802 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23624758 TAATTTTTTT
23624768 TAAAAAATAGTTAAAAAA
1 TAAAAAATAGTTAAAAAA
*
23624786 TAAAAAA-ATTTAAAAAA
1 TAAAAAATAGTTAAAAAA
23624803 ATTAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
TAAAAAATAGTTAAAAAA
Found at i:23626219 original size:17 final size:17
Alignment explanation
Indices: 23626197--23626241 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
23626187 CTTTGTTCTC
*
23626197 AAAAAACAAAAAGATATA
1 AAAAAACAAAAAAAT-TA
*
23626215 AAAAAAGAAAAAAATT-
1 AAAAAACAAAAAAATTA
23626231 AAAAAACAAAA
1 AAAAAACAAAA
23626242 TGCAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.42
17 1 0.04
18 13 0.54
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.09
Consensus pattern (17 bp):
AAAAAACAAAAAAATTA
Found at i:23629969 original size:27 final size:26
Alignment explanation
Indices: 23629939--23630016 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
23629929 CACCAAAATG
23629939 ATCCAGTCAGAGTATGCCACAAAGACA
1 ATCCA-TCAGAGTATGCCACAAAGACA
* * * *
23629966 ATCCAATCAGAAT-TCACCACAAAGGCT
1 ATCC-ATCAGAGTAT-GCCACAAAGACA
*
23629993 ATCTATACAGAGTATGCCACAAAG
1 ATCCAT-CAGAGTATGCCACAAAG
23630017 GCTGGTAGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
26 3 0.08
27 35 0.88
28 2 0.05
ACGTcount: A:0.41, C:0.26, G:0.15, T:0.18
Consensus pattern (26 bp):
ATCCATCAGAGTATGCCACAAAGACA
Found at i:23632040 original size:97 final size:96
Alignment explanation
Indices: 23631857--23632074 Score: 244
Period size: 97 Copynumber: 2.2 Consensus size: 96
23631847 AGGGTGTTAC
*
23631857 ATAAC-TCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTA
1 ATAACTTC-TTTATTTATATATATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTA
23631921 TATAAATCATTATGTTAAAA-ATATTTTTAATTA
65 TATAAATCATTATGTTAAAATATA-TTTT-ATTA
* * * * *
23631954 ATAACTTCTTTATTTATATATATAAATTAGTAAATATGTAATTTTATAATGAAATTATATTTTTT
1 ATAACTTCTTTATTTATATATATAAAATAATAAATATGTAATTATATAAT-AAA-AATATATTTT
** *
23632019 ATATTTATCATTGTGTT-AAATATATTTTATTA
64 ATATAAATCATTATGTTAAAATATATTTTATTA
* ** *
23632051 TTAACTAATTTGTTTGATATATAT
1 ATAACTTCTTTATTT-ATATATAT
23632075 TTTTATTTAT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
97 58 0.56
98 20 0.19
99 25 0.24
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (96 bp):
ATAACTTCTTTATTTATATATATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTAT
ATAAATCATTATGTTAAAATATATTTTATTA
Found at i:23632045 original size:99 final size:97
Alignment explanation
Indices: 23631857--23632046 Score: 256
Period size: 97 Copynumber: 1.9 Consensus size: 97
23631847 AGGGTGTTAC
23631857 ATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTAT
1 ATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTAT
23631922 ATAAATCATTATGTTAAAAATATTTTTAATTA
66 ATAAATCATTATGTTAAAAATATTTTTAATTA
* * * * * *
23631954 ATAACT-TCTTTATTTATATATATAAATTAGTAAATATGTAATTTTATAATGAAATTATATTTTT
1 ATAACTCT-TTTATTTATATAAATAAAATAATAAATATGTAATTATATAAT-AAA-AATATATTT
** * *
23632018 TATATTTATCATTGTGTTAAATATATTTT
63 TATATAAATCATTATGTTAAAAATATTTT
23632047 ATTATTAACT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
96 1 0.01
97 44 0.55
98 3 0.04
99 32 0.40
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (97 bp):
ATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAATATATTTTAT
ATAAATCATTATGTTAAAAATATTTTTAATTA
Found at i:23632255 original size:28 final size:28
Alignment explanation
Indices: 23632224--23632278 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
23632214 AACATAATGA
23632224 TATATAA-TATATATTTT-TATTATATAAT
1 TATATAATTAT-TATTTTAT-TTATATAAT
23632252 TATATAATTATTATTTTATTTATATAA
1 TATATAATTATTATTTTATTTATATAA
23632279 ATGAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TATATAATTATTATTTTATTTATATAAT
Found at i:23637655 original size:16 final size:16
Alignment explanation
Indices: 23637634--23637669 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23637624 TTTGGTTTGC
23637634 TGTATTGGATTAAAGG
1 TGTATTGGATTAAAGG
*
23637650 TGTATTGGATTAGAGG
1 TGTATTGGATTAAAGG
23637666 TGTA
1 TGTA
23637670 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAAAGG
Found at i:23637926 original size:18 final size:17
Alignment explanation
Indices: 23637905--23637939 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23637895 TTATTATTAA
*
23637905 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23637923 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23637940 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23638070 original size:16 final size:16
Alignment explanation
Indices: 23638033--23638074 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23638023 TTAATCATAT
*
23638033 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23638049 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23638064 TTAAAATATAT
1 TTAAAATATAT
23638075 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23638076 original size:148 final size:148
Alignment explanation
Indices: 23637808--23638099 Score: 557
Period size: 148 Copynumber: 2.0 Consensus size: 148
23637798 TAAATTTGTT
*
23637808 TTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATA
1 TTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATA
*
23637873 ATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAA
66 ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAA
23637938 ATTCTTAATAATTAGCAG
131 ATTCTTAATAATTAGCAG
*
23637956 TTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATA
1 TTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATA
23638021 ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAA
66 ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAA
23638086 ATTCTTAATAATTA
131 ATTCTTAATAATTA
23638100 ATATTCTTAT
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 141 1.00
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (148 bp):
TTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATA
ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAA
ATTCTTAATAATTAGCAG
Found at i:23638081 original size:14 final size:15
Alignment explanation
Indices: 23638042--23638083 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23638032 TTTAAACATA
*
23638042 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23638057 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23638071 A-TATAATTTAATA
1 ATTATAATTAAATA
23638084 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23638163 original size:148 final size:148
Alignment explanation
Indices: 23637843--23638163 Score: 344
Period size: 148 Copynumber: 2.2 Consensus size: 148
23637833 ATTTAAATTT
* * * *
23637843 TAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGAATATAAATAACAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * * * * *
23637908 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGTTGGTAAATTATTATTG
66 TATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACAGTTCGTAAATAATTACTC
** ** * * **
23637973 TTATTGTTATTTAAATTT
131 AAATCATAATATAAATAC
* * *
23637991 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGAATATAAATAACAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * *
23638056 TATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATA-TTCTTATATGAATTTAC
66 TATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACAGTTCGTAAAT-AA-TTAC
*
23638120 TCAAATCATAATATATGATAC
129 TCAAATCATAATATA-AATAC
*
23638141 T-GTAA-AATATAAATTAAC-ATAAT
1 TAATAAGAATATAAA-TAACAATAAT
23638164 TATTATTAAA
Statistics
Matches: 146, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
147 6 0.04
148 120 0.82
149 17 0.12
150 3 0.02
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (148 bp):
TAATAAGAATATAAATAACAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
TATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACAGTTCGTAAATAATTACTC
AAATCATAATATAAATAC
Found at i:23638201 original size:14 final size:15
Alignment explanation
Indices: 23638152--23638323 Score: 62
Period size: 15 Copynumber: 11.6 Consensus size: 15
23638142 GTAAAATATA
23638152 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23638167 TATTAAATATATTAT
1 AATTAAATATATTAT
*
23638182 AATTAAAATATATAATTT
1 AATT-AAATATAT--TAT
* *
23638200 AATAAAAT-TCTTAAT
1 AATTAAATATATT-AT
*
23638215 AATT-AATATTCTTAT
1 AATTAAATA-TATTAT
* *
23638230 -A-TAAATTTACTCA-
1 AATTAAATATA-TTAT
* *
23638243 AATCATAATATATGAT
1 AATTA-AATATATTAT
*
23638259 ACTGTAAA-ATA-TA-
1 AAT-TAAATATATTAT
23638272 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23638287 TATTAAATATATTAT
1 AATTAAATATATTAT
23638302 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23638315 AATTTAATA
1 AATTAAATA
23638324 AAATTCTTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 41
0.66 0.11 0.23
Matches are distributed among these distances:
12 3 0.03
13 15 0.13
14 25 0.21
15 41 0.35
16 23 0.20
17 5 0.04
18 5 0.04
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23638420 original size:15 final size:15
Alignment explanation
Indices: 23638393--23638440 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
23638383 TAAAATATAA
23638393 ATTAACATA-ATTATT
1 ATTAA-ATATATTATT
*
23638408 ATTAAATATATTATA
1 ATTAAATATATTATT
*
23638423 ATTAAAATATATAATT
1 ATT-AAATATATTATT
23638439 AT
1 AT
23638441 GGAGAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 3 0.11
15 13 0.46
16 12 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATATATTATT
Found at i:23638432 original size:16 final size:16
Alignment explanation
Indices: 23638392--23638434 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
23638382 GTAAAATATA
*
23638392 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
23638407 TATT-AAATATATTAT
1 AATTAAAATATATTAT
23638422 AATTAAAATATAT
1 AATTAAAATATAT
23638435 AATTATGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 11 0.48
16 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:23638462 original size:66 final size:65
Alignment explanation
Indices: 23638036--23638585 Score: 255
Period size: 59 Copynumber: 9.0 Consensus size: 65
23638026 ATCATATTTA
* *
23638036 AACATAATTATTATTAAATATATTATAATTAAAATATATAATT-T-AATAAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAATTCTTAATAATT
* * * * * * * * *
23638099 -A-AT-ATTCTTATATGAATTTACTCA-AATCATAATATATGA-TACT-G-TAAAA-T-AT-A-A
1 AACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAATTA-TGGAGAAAATTCTTAATA
23638153 ATT
63 ATT
* *
23638156 AACATAATTATTATTAAATATATTATAATTAAAATATATAATT-T-AATAAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAATTCTTAATAATT
* * * * * * * *
23638219 -A-AT-ATTCTTATATAAATTTACTCA-AATCATAATATATGA-TACT-G-TAAAA-T-AT-A-A
1 AACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAATTA-TGGAGAAAATTCTTAATA
23638273 ATT
63 ATT
* *
23638276 AACATAATTATTATTAAATATATTATAATTAAAATATATAATT-T-AATAAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAATTCTTAATAATT
* * * * * * * * *
23638339 -A-AT-ATTCTTATATGAATTTACTCA-AATCATAATATATGA-TACT-G-TAAAA-T-AT-A-A
1 AACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAATTA-TGGAGAAAATTCTTAATA
23638393 ATT
63 ATT
23638396 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAAATTCTTAATAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAG-AAAATTCTTAATAAT
23638461 T
65 T
* * * * * * * * *
23638462 -A-AT-ATTCTTATATGAATTTACTCA-AATCATAATATATGA-TACT-G-TAAAA-T-AT-A-A
1 AACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAATTA-TGGAGAAAATTCTTAATA
23638516 ATT
63 ATT
*
23638519 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGCAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAATTCTTAATAATT
23638584 AA
1 AA
23638586 TATTCTTATA
Statistics
Matches: 358, Mismatches: 71, Indels: 114
0.66 0.13 0.21
Matches are distributed among these distances:
57 16 0.04
58 18 0.05
59 97 0.27
60 66 0.18
61 85 0.24
62 19 0.05
63 20 0.06
64 23 0.06
65 10 0.03
66 4 0.01
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (65 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGAAAATTCTTAATAATT
Found at i:23638501 original size:123 final size:120
Alignment explanation
Indices: 23638036--23638692 Score: 1133
Period size: 120 Copynumber: 5.4 Consensus size: 120
23638026 ATCATATTTA
23638036 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23638101 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
23638156 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23638221 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
23638276 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23638341 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
23638396 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGA-AAAATTCTTAATAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATT-T--A-ATAAAATTCTTAATAA
23638460 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
62 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* **
23638519 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTATGGAGCAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATT-T-AATAAAATTCTTAATAATT
* *
23638584 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AATTT
64 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAAATT
* * *
23638640 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23638693 TAAAATAATT
Statistics
Matches: 518, Mismatches: 12, Indels: 15
0.95 0.02 0.03
Matches are distributed among these distances:
119 6 0.01
120 282 0.54
121 47 0.09
122 63 0.12
123 119 0.23
124 1 0.00
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:23638543 original size:15 final size:15
Alignment explanation
Indices: 23638516--23638563 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
23638506 TAAAATATAA
23638516 ATTAACATA-ATTATT
1 ATTAA-ATATATTATT
*
23638531 ATTAAATATATTATA
1 ATTAAATATATTATT
*
23638546 ATTAAAATATATAATT
1 ATT-AAATATATTATT
23638562 AT
1 AT
23638564 GGAGCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 3 0.11
15 13 0.46
16 12 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATATATTATT
Found at i:23638555 original size:16 final size:16
Alignment explanation
Indices: 23638515--23638557 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
23638505 GTAAAATATA
*
23638515 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
23638530 TATT-AAATATATTAT
1 AATTAAAATATATTAT
23638545 AATTAAAATATAT
1 AATTAAAATATAT
23638558 AATTATGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 11 0.48
16 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:23638801 original size:100 final size:93
Alignment explanation
Indices: 23638634--23638921 Score: 284
Period size: 91 Copynumber: 3.0 Consensus size: 93
23638624 ACTATAAATG
* * * *
23638634 AAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAAA
1 AAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT---
* * *
23638697 ATAATTATAACTAATAAATTATATTTTATGAATTTGTA
62 -T-A--ATAA-T-ATAAATTTTATTATATGAATTTATA
* * *
23638735 TAATTTAAAA-AA-TAATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 AAATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
*
23638798 T-A-ATAAATTTTCTTATATGAATTTATA
65 TAATATAAATTTTATTATATGAATTTATA
* *
23638825 AAATTTAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAAT
1 AAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT
* *
23638890 AATA-AAATGTTCTTATATGAATTTACTA
66 AATATAAATTTTATTATATGAATTTA-TA
23638918 AAAT
1 AAAT
23638922 CAATATATAA
Statistics
Matches: 162, Mismatches: 17, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
90 30 0.19
91 46 0.28
92 24 0.15
93 8 0.05
94 2 0.01
97 1 0.01
99 6 0.04
100 36 0.22
101 9 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (93 bp):
AAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT
AATATAAATTTTATTATATGAATTTATA
Found at i:23638830 original size:47 final size:47
Alignment explanation
Indices: 23638774--23638921 Score: 121
Period size: 47 Copynumber: 3.2 Consensus size: 47
23638764 TTAATAATAA
* *
23638774 TATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATT
1 TATAAAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
** * *
23638821 TATAAAA-TT--TAAAATAATTAATATTAAATATAATT-TAATAGTG-A--
1 TATAAAATTTCATAAAATTCTTAATAATAAAT-T--TTCTTATA-TGAATT
* *
23638865 TATATAATTTCATAAAATTCTTAATAATAAAATGTTCTTATATGAATT
1 TATAAAATTTCATAAAATTCTTAATAAT-AAATTTTCTTATATGAATT
23638913 TACTAAAAT
1 TA-TAAAAT
23638922 CAATATATAA
Statistics
Matches: 75, Mismatches: 13, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
44 22 0.29
45 7 0.09
46 12 0.16
47 23 0.31
48 6 0.08
49 5 0.07
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (47 bp):
TATAAAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
Found at i:23638873 original size:91 final size:90
Alignment explanation
Indices: 23638708--23638921 Score: 295
Period size: 91 Copynumber: 2.3 Consensus size: 90
23638698 TAATTATAAC
* * * * * *
23638708 TAATAAATTATATTTTATGAATTTGTATAATTTAAAAAATAATTATTACATATAATTTAATAATA
1 TAATAAATTTTCTTATATGAATTTATAAAATTTAAAAAATAATTATTAAATATAATTTAATAATA
*
23638773 ATATATAATTTCATAAAATTCTTGA
66 ATATATAATTTCATAAAATTCTTAA
*
23638798 TAATAAATTTTCTTATATGAATTTATAAAATTTAAAATAATTAA-TATTAAATATAATTTAATAG
1 TAATAAATTTTCTTATATGAATTTATAAAATTTAAAA-AA-TAATTATTAAATATAATTTAATAA
*
23638862 TGATATATAATTTCATAAAATTCTTAA
64 TAATATATAATTTCATAAAATTCTTAA
*
23638889 TAATAAAATGTTCTTATATGAATTTACTAAAAT
1 TAAT-AAATTTTCTTATATGAATTTA-TAAAAT
23638922 CAATATATAA
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
90 32 0.29
91 49 0.45
92 23 0.21
93 6 0.05
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (90 bp):
TAATAAATTTTCTTATATGAATTTATAAAATTTAAAAAATAATTATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:23644697 original size:22 final size:21
Alignment explanation
Indices: 23644668--23644709 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
23644658 AAAGGTGTAA
23644668 GAAATGAAACAGGAAGAGGCT
1 GAAATGAAACAGGAAGAGGCT
23644689 GAAAGTGAAACAGGAAGAGGC
1 GAAA-TGAAACAGGAAGAGGC
23644710 CGATGGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.48, C:0.10, G:0.36, T:0.07
Consensus pattern (21 bp):
GAAATGAAACAGGAAGAGGCT
Found at i:23646061 original size:11 final size:13
Alignment explanation
Indices: 23646045--23646077 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
23646035 ATTTCACAGA
23646045 AAAATTTCG-T-G
1 AAAATTTCGTTCG
23646056 AAAATTTCGTTCG
1 AAAATTTCGTTCG
23646069 AAAATTTCG
1 AAAATTTCG
23646078 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:23646859 original size:51 final size:51
Alignment explanation
Indices: 23646811--23647104 Score: 274
Period size: 51 Copynumber: 5.8 Consensus size: 51
23646801 TATTGATGAA
* *
23646811 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGATAAATGATGGT
* * * * * * * * *
23646862 CACATGTATAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGATAA-ATGATGGT
* *
23646913 CACGTGTGTACTACTGTGTGAAGGCTACTATGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGATAAATGATGGT
* * * * *
23646964 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAA-GCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGATAAATG--ATGGT
* * * *** *
23647015 CATGTGTGTAGTACTATATGAAGGCTACTACGTGAA-C-AGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGA-TAAATGATGGT
* *
23647065 CACGTGTGTAGTACTATGTGAAGGCTACTAAGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGA
23647105 ATGATAAAAG
Statistics
Matches: 193, Mismatches: 41, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
49 2 0.01
50 41 0.21
51 148 0.77
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAATCGATAAATGATGGT
Found at i:23646987 original size:102 final size:102
Alignment explanation
Indices: 23646811--23647105 Score: 416
Period size: 102 Copynumber: 2.9 Consensus size: 102
23646801 TATTGATGAA
*
23646811 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTATAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
23646876 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* *
23646913 CACGTGTGTACTACTGTGTGAAGGCTACTATGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
23646978 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* * * *** * *
23647015 CATGTGTGTAGTACTATATGAAGGCTACTACGTGAA-C-AGTAAAACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGA-TAAATGATGGTCACATGTGTAGTA
* *
23647078 CTATGTGAAGGCTACTAA-GTGTATCGAA
65 CTAAGTGAAGGCTAC-AATGTGTACCGAA
23647106 TGATAAAAGT
Statistics
Matches: 173, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
100 1 0.01
101 43 0.25
102 129 0.75
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:23647364 original size:37 final size:38
Alignment explanation
Indices: 23647295--23647367 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
23647285 ATGTGTGGAA
* **
23647295 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
23647333 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
23647368 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:23650408 original size:28 final size:28
Alignment explanation
Indices: 23650355--23650417 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
23650345 CCGTCAAGAT
* *
23650355 TATCTTATATGTGGAAGTCCGCCAGGAG
1 TATCTTATATGGGGAAGTCCGCCAGGAC
** *
23650383 TATCTTATATGGGGAAGTTTGTCAGGAC
1 TATCTTATATGGGGAAGTCCGCCAGGAC
23650411 TATCTTA
1 TATCTTA
23650418 CGTGTATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (28 bp):
TATCTTATATGGGGAAGTCCGCCAGGAC
Found at i:23652791 original size:3 final size:3
Alignment explanation
Indices: 23652777--23652828 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
23652767 AGAACGACAT
* * * * *
23652777 AGA AGA AAA AGA AGA AGG AGA AGG AGA AGG AGA AGG AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
23652825 AGA A
1 AGA A
23652829 ATGGACACAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:23653775 original size:22 final size:23
Alignment explanation
Indices: 23653730--23653775 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
23653720 TCGCTAGAAG
* *
23653730 TATTGTTTGGAATTGGAGTGAAA
1 TATTGTTTGGAATTGCAGTAAAA
*
23653753 TATTGTTTGG-ATTGCATTAAAA
1 TATTGTTTGGAATTGCAGTAAAA
23653775 T
1 T
23653776 CAGAGTTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (23 bp):
TATTGTTTGGAATTGCAGTAAAA
Found at i:23664709 original size:40 final size:40
Alignment explanation
Indices: 23664657--23664840 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
23664647 TAACTCATTC
* *
23664657 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
23664697 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
23664737 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGTAAA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
* ** ** *
23664777 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
23664818 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23664841 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
39 8 0.07
40 99 0.85
41 9 0.08
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:23664771 original size:80 final size:80
Alignment explanation
Indices: 23664660--23664840 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
23664650 CTCATTCAAT
* ** *
23664660 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCAAAAATACCTTC-GGATCTTAACCCGGATA-
*
23664723 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* **
23664739 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGTAAAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCAAAAATACCTTCGGATCTTAACCCGGATA
23664803 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
23664820 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23664841 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 69 0.79
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCAAAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:23672626 original size:79 final size:79
Alignment explanation
Indices: 23672527--23672746 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
23672517 CTCGTTCAAG
* * ** * *
23672527 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-AT
*
23672591 TAA-AACTCGCACGAA
64 TAATAACTCGCACAAA
* * * *
23672606 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
23672671 ATAACTCGCACAAA
66 ATAACTCGCACAAA
* * ** * * *
23672685 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
23672747 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 68 0.59
80 26 0.22
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:23672706 original size:40 final size:40
Alignment explanation
Indices: 23672564--23672746 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
23672554 TAACTCATTC
* *
23672564 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
23672604 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23672643 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
23672683 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
23672724 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23672747 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:23681014 original size:22 final size:22
Alignment explanation
Indices: 23680986--23681028 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
23680976 ATTTTACTAG
23680986 TTTACTAGAATAAGGAAATTAA
1 TTTACTAGAATAAGGAAATTAA
23681008 TTTACTAGAATAAGGAAATTA
1 TTTACTAGAATAAGGAAATTA
23681029 TTTTCCCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.33
Consensus pattern (22 bp):
TTTACTAGAATAAGGAAATTAA
Found at i:23690128 original size:15 final size:16
Alignment explanation
Indices: 23690097--23690131 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
23690087 AGAAGATCCC
*
23690097 AATGCAATTGAATCTA
1 AATGCAAATGAATCTA
23690113 AATGCAAATG-ATCTA
1 AATGCAAATGAATCTA
23690128 AATG
1 AATG
23690132 AATGAATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (16 bp):
AATGCAAATGAATCTA
Found at i:23698979 original size:34 final size:34
Alignment explanation
Indices: 23698876--23698980 Score: 120
Period size: 35 Copynumber: 3.0 Consensus size: 34
23698866 GGAGCGGCAT
*
23698876 CGTGTAAAAGATATACAGGTCCTACAGGGCGACAC
1 CGTGTAAAAG-TATACAAGTCCTACAGGGCGACAC
*
23698911 CGTGTAAATAGTATACAAGTCCTACAGGGTGACAC
1 CGTGTAAA-AGTATACAAGTCCTACAGGGCGACAC
** ** * *
23698946 TTTGTAAAAGTATACATTTCCTTCGGGGCGACAC
1 CGTGTAAAAGTATACAAGTCCTACAGGGCGACAC
23698980 C
1 C
23698981 TCAAAAGGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 21 0.36
35 36 0.61
36 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (34 bp):
CGTGTAAAAGTATACAAGTCCTACAGGGCGACAC
Found at i:23711358 original size:14 final size:14
Alignment explanation
Indices: 23711339--23711427 Score: 78
Period size: 14 Copynumber: 6.4 Consensus size: 14
23711329 TAAATAACTC
23711339 CAACAATAGTTATA
1 CAACAATAGTTATA
* *
23711353 CAACAAGAAGTCATA
1 CAACAA-TAGTTATA
*
23711368 -AACAATA-ATATTA
1 CAACAATAGTTA-TA
23711381 -AACAATAGTTATA
1 CAACAATAGTTATA
* *
23711394 CAACAAGAAGTCATA
1 CAACAA-TAGTTATA
23711409 -AACAATAGTTATA
1 CAACAATAGTTATA
23711422 CAACAA
1 CAACAA
23711428 GAAGTCATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
12 1 0.02
13 18 0.31
14 28 0.47
15 12 0.20
ACGTcount: A:0.55, C:0.15, G:0.08, T:0.22
Consensus pattern (14 bp):
CAACAATAGTTATA
Found at i:23711412 original size:28 final size:28
Alignment explanation
Indices: 23711379--23711437 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
23711369 ACAATAATAT
23711379 TAAACAATAGTTATACAACAAGAAGTCA
1 TAAACAATAGTTATACAACAAGAAGTCA
23711407 TAAACAATAGTTATACAACAAGAAGTCA
1 TAAACAATAGTTATACAACAAGAAGTCA
23711435 TAA
1 TAA
23711438 CCTTGTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.54, C:0.14, G:0.10, T:0.22
Consensus pattern (28 bp):
TAAACAATAGTTATACAACAAGAAGTCA
Found at i:23713037 original size:17 final size:17
Alignment explanation
Indices: 23713015--23713048 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23713005 AGGTTTCAAG
*
23713015 TTTAAGGTAGTAAACAA
1 TTTAAGATAGTAAACAA
*
23713032 TTTAAGATAGTTAACAA
1 TTTAAGATAGTAAACAA
23713049 AAGGCCACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (17 bp):
TTTAAGATAGTAAACAA
Found at i:23718264 original size:36 final size:36
Alignment explanation
Indices: 23718217--23718288 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
23718207 AGAAGACTGT
23718217 GACCCAAACCAATTCGATCCACCAT-TCGTATAACAC
1 GACCCAAACCAATTCGATCCACCATCT-GTATAACAC
* *
23718253 GACCCAGACCAATTCGATCCACTATCTGTATAACAC
1 GACCCAAACCAATTCGATCCACCATCTGTATAACAC
23718289 ATATATACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 32 0.97
37 1 0.03
ACGTcount: A:0.35, C:0.35, G:0.10, T:0.21
Consensus pattern (36 bp):
GACCCAAACCAATTCGATCCACCATCTGTATAACAC
Found at i:23720825 original size:25 final size:25
Alignment explanation
Indices: 23720795--23720888 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
23720785 GTTCTAACCC
23720795 ACAGCTCATGTGAGCATACCGATTT
1 ACAGCTCATGTGAGCATACCGATTT
* * * * *
23720820 ATAGCTCGTGAGAGCATACTGATCT
1 ACAGCTCATGTGAGCATACCGATTT
* * *
23720845 ACAACTTGA-GTGAGCATACCGATTC
1 ACAGC-TCATGTGAGCATACCGATTT
*
23720870 ACAGCTCATATGAGCATAC
1 ACAGCTCATGTGAGCATAC
23720889 ATGTACATGA
Statistics
Matches: 51, Mismatches: 16, Indels: 4
0.72 0.23 0.06
Matches are distributed among these distances:
24 2 0.04
25 48 0.94
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCGATTT
Found at i:23722660 original size:35 final size:35
Alignment explanation
Indices: 23722590--23722693 Score: 136
Period size: 35 Copynumber: 2.9 Consensus size: 35
23722580 AAATGCGATG
* *
23722590 TTAAAAAGGTTTGGATAGACAAGTTCTAAGGCAACC
1 TTAAAAAGGTTAGGATAGACACG-TCTAAGGCAACC
* *
23722626 TTAAAAAGATTAGGATAGACTCGTCTAAGGCAACC
1 TTAAAAAGGTTAGGATAGACACGTCTAAGGCAACC
** *
23722661 TTCCAAAGGTTGGGATAGACACGTCTAAGGCAA
1 TTAAAAAGGTTAGGATAGACACGTCTAAGGCAA
23722694 TTTTTTTTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 40 0.68
36 19 0.32
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (35 bp):
TTAAAAAGGTTAGGATAGACACGTCTAAGGCAACC
Found at i:23736147 original size:51 final size:51
Alignment explanation
Indices: 23736059--23736239 Score: 200
Period size: 51 Copynumber: 3.5 Consensus size: 51
23736049 TGGAGCAAAT
* * * ** *
23736059 TGAAGGCAGCGGATCTTATTTCCCTAGCATTGTAGTGGAACAGATTAAAGC
1 TGAAGGCAGCGAATCTTGTTTCCCTGGTGTTGCAGTGGAACAGATTAAAGC
* * * *
23736110 TAAAGGTAGCAAATCTTGTTTCCCTGGTGTTGCAGTGGAATAGATTAAAGC
1 TGAAGGCAGCGAATCTTGTTTCCCTGGTGTTGCAGTGGAACAGATTAAAGC
* * * * *
23736161 TGAAGTGGAGCGGATCGTGTTTCCCTGGTGTTGCAGCGGAGCAGATTAAAGC
1 TGAAG-GCAGCGAATCTTGTTTCCCTGGTGTTGCAGTGGAACAGATTAAAGC
* *
23736213 TGAAGGCAGCGAATCTTATCTCCCTGG
1 TGAAGGCAGCGAATCTTGTTTCCCTGG
23736240 CATTAAAGTT
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
51 62 0.58
52 44 0.42
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (51 bp):
TGAAGGCAGCGAATCTTGTTTCCCTGGTGTTGCAGTGGAACAGATTAAAGC
Found at i:23736195 original size:52 final size:51
Alignment explanation
Indices: 23736092--23736227 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 51
23736082 CTAGCATTGT
* * *
23736092 AGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGTGTTGC
1 AGTGGAACAGATTAAAGCTGAAGGGAGCAAATCGTGTTTCCCTGGTGTTGC
* **
23736143 AGTGGAATAGATTAAAGCTGAAGTGGAGCGGATCGTGTTTCCCTGGTGTTGC
1 AGTGGAACAGATTAAAGCTGAAG-GGAGCAAATCGTGTTTCCCTGGTGTTGC
* * * *
23736195 AGCGGAGCAGATTAAAGCTGAAGGCAGCGAATC
1 AGTGGAACAGATTAAAGCTGAAGGGAGCAAATC
23736228 TTATCTCCCT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 29 0.40
52 44 0.60
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (51 bp):
AGTGGAACAGATTAAAGCTGAAGGGAGCAAATCGTGTTTCCCTGGTGTTGC
Found at i:23738913 original size:18 final size:19
Alignment explanation
Indices: 23738879--23738914 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23738869 AGGATCATAT
23738879 TTTTAAATTTCTTTTCGAA
1 TTTTAAATTTCTTTTCGAA
*
23738898 TTTTCAATTT-TTTTCGA
1 TTTTAAATTTCTTTTCGA
23738915 CATTAAGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.22, C:0.11, G:0.06, T:0.61
Consensus pattern (19 bp):
TTTTAAATTTCTTTTCGAA
Found at i:23741889 original size:22 final size:23
Alignment explanation
Indices: 23741863--23741920 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
23741853 GAACAACATA
* * *
23741863 AAAAATAAA-GTAGATTACAACT
1 AAAAATAAACCTAAATTACAAAT
23741885 AAAAA-AAACCTAAATTACAAAT
1 AAAAATAAACCTAAATTACAAAT
* *
23741907 AGAAATAAAACTAA
1 AAAAATAAACCTAA
23741921 CAAGGAACGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 3 0.10
22 19 0.66
23 7 0.24
ACGTcount: A:0.66, C:0.10, G:0.05, T:0.19
Consensus pattern (23 bp):
AAAAATAAACCTAAATTACAAAT
Found at i:23742792 original size:204 final size:204
Alignment explanation
Indices: 23742558--23742954 Score: 530
Period size: 204 Copynumber: 1.9 Consensus size: 204
23742548 GATGCAATAC
* *
23742558 TAAAGTACCCTTAAACAATATAATTTATTTTAAATACGAAAGGATATCAAAGTAATTTTCCTAAC
1 TAAAGTACCCTCAAACAATATAATTTATTTTAAATACGAAAAGATATCAAAGTAATTTTCCTAAC
** * * *
23742623 CATGTTGGT-GCCTGGTTGACTTGTGACACCAACTCAGCCA-ATGTTTAAATAATAGTAAATATA
66 CACATTGGTAGCC-GGTTGAATTGTGACACCAACTCAGCCACAGGTTTAAACAATAGTAAATATA
* * * * *
23742686 GATATACAGTTGATAGAGGTAATAAA-ATGCGTATAATAGATTGAAATGTATAAAAAAAATCAAA
130 AATATACAATTGATAGAGGTAATAAATATGCATATAATAAATTAAAATGT-T-AAAAAAATCAAA
23742750 ATCAGGCTTTGA
193 ATCAGGCTTTGA
* * *
23742762 TAAAGTACTCTCAAATAATATAATTTATTTTAAATACGAAAAGATATCAAAGTAATTTTCTTAAC
1 TAAAGTACCCTCAAACAATATAATTTATTTTAAATACGAAAAGATATCAAAGTAATTTTCCTAAC
* * ** * *
23742827 CGCATTGGTAGCCGGTTGAATTGTGACACCAACTTAGTTACGGGTTTAAACAATAGTAAGTATAA
66 CACATTGGTAGCCGGTTGAATTGTGACACCAACTCAGCCACAGGTTTAAACAATAGTAAATATAA
* *
23742892 ATATACAATTGATGGAGGTAATAAATTGTGCATATAATAAATTAAAATGTTAAAAAAATCAAA
131 ATATACAATTGATAGAGGTAATAAA-TATGCATATAATAAATTAAAATGTTAAAAAAATCAAA
23742955 GTGAAGCTTT
Statistics
Matches: 166, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
204 89 0.54
205 57 0.34
206 1 0.01
207 19 0.11
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (204 bp):
TAAAGTACCCTCAAACAATATAATTTATTTTAAATACGAAAAGATATCAAAGTAATTTTCCTAAC
CACATTGGTAGCCGGTTGAATTGTGACACCAACTCAGCCACAGGTTTAAACAATAGTAAATATAA
ATATACAATTGATAGAGGTAATAAATATGCATATAATAAATTAAAATGTTAAAAAAATCAAAATC
AGGCTTTGA
Found at i:23744919 original size:16 final size:16
Alignment explanation
Indices: 23744898--23744930 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
23744888 TTCGCTGTAT
23744898 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
23744914 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
23744930 T
1 T
23744931 AGCAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:23744974 original size:45 final size:44
Alignment explanation
Indices: 23744910--23744999 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
23744900 GAATAGAGGC
*
23744910 GTAATGGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAAC-AAT-AATGTGTTTGGTTGAAT
*
23744955 GTAATGGAATAGAGGCGTAATAACAATATTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAACAATAATGTGTTTGGTTGAAT
23744999 G
1 G
23745000 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 2 0.05
44 17 0.40
45 23 0.55
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAACAATAATGTGTTTGGTTGAAT
Found at i:23745000 original size:39 final size:43
Alignment explanation
Indices: 23744910--23745015 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 43
23744900 GAATAGAGGC
*
23744910 GTAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAACAAATCAATTGTTTGGTT--AT
*
23744955 GTAATGGAATAGAGGCGTAATAAC-AAT-ATTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAACAAATCAAT-TGTTTGGTTAT
*
23744995 G-AATGGAATAGAGGTGTAATA
1 GTAATGGAATAGAGGCGTAATA
23745016 GCATAATATA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 19 0.33
40 2 0.04
43 3 0.05
44 10 0.18
45 23 0.40
ACGTcount: A:0.36, C:0.05, G:0.28, T:0.31
Consensus pattern (43 bp):
GTAATGGAATAGAGGCGTAATAACAAATCAATTGTTTGGTTAT
Found at i:23745181 original size:16 final size:16
Alignment explanation
Indices: 23745144--23745185 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23745134 TTAATCATAT
*
23745144 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23745160 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23745175 TTAAAATATAT
1 TTAAAATATAT
23745186 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23745192 original size:14 final size:15
Alignment explanation
Indices: 23745153--23745194 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23745143 TTTAAACATA
*
23745153 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23745168 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23745182 A-TATAATTTAATA
1 ATTATAATTAAATA
23745195 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23745326 original size:22 final size:18
Alignment explanation
Indices: 23745283--23745410 Score: 93
Period size: 18 Copynumber: 7.0 Consensus size: 18
23745273 ATTATTATTA
23745283 AATATAATTTAATAAAAT
1 AATATAATTTAATAAAAT
23745301 -ATATAATTTAATAAAAT
1 AATATAATTTAATAAAAT
** ***
23745318 TCT-TAATATTAAATATTCT
1 AATATAAT-TT-AATAAAAT
*
23745337 TATATGAATTTAATAAAAT
1 AATAT-AATTTAATAAAAT
* * *
23745356 CATA-ATATATAATACTAAT
1 AATATA-ATTTAATA-AAAT
23745375 AATATAATTTAATAAAA-
1 AATATAATTTAATAAAAT
23745392 ATATATAATTTAATAAAAT
1 A-ATATAATTTAATAAAAT
23745411 TCTTAATATT
Statistics
Matches: 86, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
17 23 0.27
18 28 0.33
19 28 0.33
20 4 0.05
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (18 bp):
AATATAATTTAATAAAAT
Found at i:23745359 original size:119 final size:119
Alignment explanation
Indices: 23745142--23745386 Score: 395
Period size: 119 Copynumber: 2.1 Consensus size: 119
23745132 ATTTAATCAT
23745142 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* * * *
23745207 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
65 ATAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTA-AAAATATA
23745263 ATTTAACATAATTATTATTAAATATAATT-TAA-TAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
23745326 TTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTAATAATATA
65 ATAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTAAAAATATA
23745381 ATTTAA
1 ATTTAA
23745387 TAAAAATATA
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
118 13 0.11
119 73 0.62
120 24 0.21
121 7 0.06
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (119 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTAAAAATATA
Found at i:23745384 original size:37 final size:37
Alignment explanation
Indices: 23745286--23745391 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 37
23745276 ATTATTAAAT
*
23745286 ATAAT-TT-AATAAAAT-ATATAATTTAATAAAATTC
1 ATAATATTAAATATAATAATATAATTTAATAAAATTC
* ** *
23745320 TTAATATTAAATATTCTTATATGAATTTAATAAAA-TC
1 ATAATATTAAATATAATAATAT-AATTTAATAAAATTC
23745357 ATAATA-TATAATACTAATAATATAATTTAATAAAA
1 ATAATATTA-AATA-TAATAATATAATTTAATAAAA
23745392 ATATATAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
34 4 0.07
35 2 0.03
36 7 0.12
37 27 0.47
38 18 0.31
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (37 bp):
ATAATATTAAATATAATAATATAATTTAATAAAATTC
Found at i:23745405 original size:93 final size:94
Alignment explanation
Indices: 23745283--23745483 Score: 372
Period size: 93 Copynumber: 2.2 Consensus size: 94
23745273 ATTATTATTA
23745283 AATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
1 AATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
23745347 TAATAAAATCATAATATATAATACTA-AT
66 TAATAAAATCATAATATATAATACTATAT
23745375 AATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
1 AATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
23745440 TAATAAAATCATAATATATAATACTATAT
66 TAATAAAATCATAATATATAATACTATAT
23745469 AATATAGA-TTAATAA
1 AATATA-ATTTAATAA
23745484 TGTAGATACT
Statistics
Matches: 106, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
92 13 0.12
93 77 0.73
94 15 0.14
95 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (94 bp):
AATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
TAATAAAATCATAATATATAATACTATAT
Found at i:23745406 original size:37 final size:35
Alignment explanation
Indices: 23745284--23745406 Score: 99
Period size: 37 Copynumber: 3.4 Consensus size: 35
23745274 TTATTATTAA
* *
23745284 ATATAATTTAATAAAATATATAATTTAATAAAATT
1 ATATAATTTAATATAATATATAATTTAATAAAAAT
* **
23745319 CT-TAATATTAAATATTCTTATATGAATTTAAT-AAAAT
1 ATATAAT-TT-AATA-TAATATAT-AATTTAATAAAAAT
*
23745356 CATA-ATATATAATACTAATAATATAATTTAATAAAAAT
1 -ATATA-ATTTAATA-TAAT-ATATAATTTAATAAAAAT
23745394 ATATAATTTAATA
1 ATATAATTTAATA
23745407 AAATTCTTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
34 4 0.06
35 3 0.04
36 4 0.06
37 33 0.49
38 21 0.31
39 2 0.03
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (35 bp):
ATATAATTTAATATAATATATAATTTAATAAAAAT
Found at i:23757884 original size:3 final size:3
Alignment explanation
Indices: 23757858--23757913 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
23757848 TTATCAATTC
* *
23757858 ATT ATT A-T ATT GTT A-T ATC A-T ATT ATT ATT -TT -TGT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
23757899 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
23757914 CACTCATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 8 0.18
3 35 0.80
4 1 0.02
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:23758023 original size:28 final size:31
Alignment explanation
Indices: 23757949--23758027 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 31
23757939 AAATTTTGCT
23757949 ATATATATATACAT-T-CATACATTTTTATA
1 ATATATATATACATATACATACATTTTTATA
* * *
23757978 ATATATATGTACACATACATA-TTTTTTATA
1 ATATATATATACATATACATACATTTTTATA
23758008 AT-T-TATATACATATACATAC
1 ATATATATATACATATACATAC
23758028 TTATATATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
28 14 0.33
29 13 0.31
30 11 0.26
31 4 0.10
ACGTcount: A:0.42, C:0.11, G:0.01, T:0.46
Consensus pattern (31 bp):
ATATATATATACATATACATACATTTTTATA
Found at i:23760905 original size:57 final size:56
Alignment explanation
Indices: 23760801--23760913 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 56
23760791 ACCCTAATTC
* *
23760801 AGATTACCCGTCCGGGCTAAATCACTTTCCACATATTCTTCGGGAGGGCTATATCA
1 AGATCACCCGTCCGGGCTAAATCACTTTCCACATATTCTTCAGGAGGGCTATATCA
* * *
23760857 AGATCACCCGTCCGGGCTAGATCATTTTCACACATATTCTTCATGAGGGCTATATCA
1 AGATCACCCGTCCGGGCTAAATCACTTTC-CACATATTCTTCAGGAGGGCTATATCA
23760914 GGATAGGATC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
56 26 0.51
57 25 0.49
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (56 bp):
AGATCACCCGTCCGGGCTAAATCACTTTCCACATATTCTTCAGGAGGGCTATATCA
Found at i:23763606 original size:20 final size:20
Alignment explanation
Indices: 23763583--23763635 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
23763573 TTTATACTTA
*
23763583 TATATTCATTATTATATTTT
1 TATATTCATTATTATAATTT
23763603 TATA-TCA-TATTATTAATTT
1 TATATTCATTATTA-TAATTT
*
23763622 TGTATT-ATTATTAT
1 TATATTCATTATTAT
23763636 TATTATTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 5 0.18
19 13 0.46
20 10 0.36
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (20 bp):
TATATTCATTATTATAATTT
Found at i:23763749 original size:27 final size:27
Alignment explanation
Indices: 23763696--23763750 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
23763686 AGATTCATAC
23763696 ATTTTTATAATATATATACACATACAT
1 ATTTTTATAATATATATACACATACAT
* *
23763723 ATTTTTATAATTTATATACATATACAT
1 ATTTTTATAATATATATACACATACAT
23763750 A
1 A
23763751 CTTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTTTTATAATATATATACACATACAT
Found at i:23763758 original size:27 final size:27
Alignment explanation
Indices: 23763701--23763763 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
23763691 CATACATTTT
* * *
23763701 TATAATATATATACACATACATATTTT
1 TATAATTTATATACACATACATACTTA
*
23763728 TATAATTTATATACATATACATACTTA
1 TATAATTTATATACACATACATACTTA
23763755 TATATATTT
1 TATA-ATTT
23763764 CTTATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (27 bp):
TATAATTTATATACACATACATACTTA
Found at i:23764861 original size:31 final size:31
Alignment explanation
Indices: 23764823--23764885 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
23764813 AACCCATGTT
*
23764823 ATTCGAGTTTTTTTACTGATCGTATTTTTAA
1 ATTCGAGTTTTTTTAATGATCGTATTTTTAA
23764854 ATTCGAGTTTTTTTAATGATCGTATTTTTAA
1 ATTCGAGTTTTTTTAATGATCGTATTTTTAA
23764885 A
1 A
23764886 AAACTCTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54
Consensus pattern (31 bp):
ATTCGAGTTTTTTTAATGATCGTATTTTTAA
Found at i:23772909 original size:105 final size:105
Alignment explanation
Indices: 23772753--23772993 Score: 320
Period size: 105 Copynumber: 2.3 Consensus size: 105
23772743 AGATCGCAAC
* * *** * * *
23772753 TGATATTATTAAGGTTAGCTGATTTAATATTGTAACCTAAGTTTAATCGAGTTAGCTTATTTAAG
1 TGATTTTATTAAGGTTAGCTGATTTAAGATCACAACCTAAATTTAATCGAGTTAACTAATTTAAG
*
23772818 ATAGCAACTCTTACACAACTCGCTGACCTACGTTCACAGG
66 ATAGCAACTCCTACACAACTCGCTGACCTACGTTCACAGG
* * * * *
23772858 TGATTTTATTAAGGTTAACTAATTTAAGATCACAAGCTAAATTTATTCGAGTTAACTAATTTAAT
1 TGATTTTATTAAGGTTAGCTGATTTAAGATCACAACCTAAATTTAATCGAGTTAACTAATTTAAG
* * *
23772923 ATTGCAACTCCTACACAGCTCGCTGACCTATGTTCACAGG
66 ATAGCAACTCCTACACAACTCGCTGACCTACGTTCACAGG
*
23772963 TGATTTTATTAAGGTTAGTTGATTTAAGATC
1 TGATTTTATTAAGGTTAGCTGATTTAAGATC
23772994 GCATGTAATG
Statistics
Matches: 116, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
105 116 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (105 bp):
TGATTTTATTAAGGTTAGCTGATTTAAGATCACAACCTAAATTTAATCGAGTTAACTAATTTAAG
ATAGCAACTCCTACACAACTCGCTGACCTACGTTCACAGG
Found at i:23774304 original size:50 final size:52
Alignment explanation
Indices: 23774195--23774346 Score: 191
Period size: 50 Copynumber: 2.9 Consensus size: 52
23774185 ATTTGGGTAA
* *
23774195 AGAGATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGATCA-G
23774251 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGA-C-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATCAG
** * * *
23774301 AGAGGTCCCCCGTAAGACCTTGTCTGGGACATCGCATGGGCACCGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
23774347 TATGAGATGT
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
50 42 0.47
52 1 0.01
53 4 0.04
55 2 0.02
56 40 0.45
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.20
Consensus pattern (52 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATCAG
Found at i:23775900 original size:12 final size:12
Alignment explanation
Indices: 23775883--23775907 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23775873 GGTGTTCATT
23775883 CGGTTAACCGAC
1 CGGTTAACCGAC
23775895 CGGTTAACCGAC
1 CGGTTAACCGAC
23775907 C
1 C
23775908 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:23776082 original size:9 final size:8
Alignment explanation
Indices: 23776068--23776140 Score: 83
Period size: 9 Copynumber: 8.2 Consensus size: 8
23776058 TTTGGTTAAA
23776068 AATTACCTG
1 AATTACC-G
23776077 AATTACCCG
1 AATTA-CCG
23776086 AATTACCCG
1 AATTA-CCG
23776095 AATTACCCG
1 AATTA-CCG
23776104 AATTAACCG
1 AATT-ACCG
23776113 AATTAACCG
1 AATT-ACCG
23776122 AATTAACCG
1 AATT-ACCG
23776131 AATTACCG
1 AATTACCG
23776139 AA
1 AA
23776141 AAATACCCGA
Statistics
Matches: 62, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
8 6 0.10
9 53 0.85
10 3 0.05
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (8 bp):
AATTACCG
Found at i:23776091 original size:18 final size:18
Alignment explanation
Indices: 23776076--23776137 Score: 106
Period size: 18 Copynumber: 3.4 Consensus size: 18
23776066 AAAATTACCT
*
23776076 GAATTACCCGAATTACCC
1 GAATTACCCGAATTAACC
23776094 GAATTACCCGAATTAACC
1 GAATTACCCGAATTAACC
*
23776112 GAATTAACCGAATTAACC
1 GAATTACCCGAATTAACC
23776130 GAATTACC
1 GAATTACC
23776138 GAAAAATACC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (18 bp):
GAATTACCCGAATTAACC
Found at i:23776106 original size:27 final size:27
Alignment explanation
Indices: 23776068--23776137 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
23776058 TTTGGTTAAA
* *
23776068 AATTACCTGAATTACCCGAATTACCCG
1 AATTACCCGAATTACCCGAATTAACCG
*
23776095 AATTACCCGAATTAACCGAATTAACCG
1 AATTACCCGAATTACCCGAATTAACCG
*
23776122 AATTAACCGAATTACC
1 AATTACCCGAATTACC
23776138 GAAAAATACC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (27 bp):
AATTACCCGAATTACCCGAATTAACCG
Found at i:23776716 original size:105 final size:105
Alignment explanation
Indices: 23776529--23776753 Score: 312
Period size: 105 Copynumber: 2.2 Consensus size: 105
23776519 CACACCCCTA
* * * *
23776529 GCAACTCCTACATAGCTCACTGACCTACGTTCACAGTTAATTTTATTAAGATTTGTTGATTTAAG
1 GCAACTCCTACACAGCTCACTGACCTACGTTCAAAGCTAATTTTATTAAGATTTGTAGATTTAAG
* *
23776594 ATCGCAACCTAAATTTATTCGAGTT-AGCTTATTTAAGATT
66 ATCACAACCTAAATTTATTCGAGTTCA-CTTATTTAAGATC
* *
23776634 GCAACTCCTACACAGCTCACTGACCTACTTTCAAAGCTAATTTTATTAAGGTTAT-TAGATTTAA
1 GCAACTCCTACACAGCTCACTGACCTACGTTCAAAGCTAATTTTATTAAGATT-TGTAGATTTAA
* * *
23776698 GATCACAATCTAAGTTTATTTGAGTTCACTTATTTAAGATC
65 GATCACAACCTAAATTTATTCGAGTTCACTTATTTAAGATC
23776739 GCAACTCCTA-ACAGC
1 GCAACTCCTACACAGC
23776754 GTGTTGATTT
Statistics
Matches: 107, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
104 5 0.05
105 100 0.93
106 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (105 bp):
GCAACTCCTACACAGCTCACTGACCTACGTTCAAAGCTAATTTTATTAAGATTTGTAGATTTAAG
ATCACAACCTAAATTTATTCGAGTTCACTTATTTAAGATC
Found at i:23776941 original size:118 final size:118
Alignment explanation
Indices: 23776723--23776945 Score: 322
Period size: 118 Copynumber: 1.9 Consensus size: 118
23776713 TTATTTGAGT
* * *
23776723 TCACTTATTTAAGATCGCAACTCCTAACAGCGTGTTGATTTAAGATCGCAATTGATATTATTAAG
1 TCACTGATTTAAGATCGCAACTCCTAACAACGTGTTGATTTAAGATCGCAATTAATATTATTAAG
* *
23776788 GCTAGGTGATTTACGATCGCAACTTAAGTTAATTTGAGTTTATTGATTTAAGA
66 GCTAGGTGATTTACGATCGCAACCTAAATTAATTTGAGTTTATTGATTTAAGA
* *
23776841 TCACTGATTTAAGATCGCAACTCCTAACAACTTGTTGATTTAAGATCGC-ATCTAATTTTATTAA
1 TCACTGATTTAAGATCGCAACTCCTAACAACGTGTTGATTTAAGATCGCAAT-TAATATTATTAA
* * * * *
23776905 GGTTAGTTGATTTACGATTGTAACCTAAATTTATTTGAGTT
65 GGCTAGGTGATTTACGATCGCAACCTAAATTAATTTGAGTT
23776946 AGCTTATTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
117 2 0.02
118 90 0.98
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (118 bp):
TCACTGATTTAAGATCGCAACTCCTAACAACGTGTTGATTTAAGATCGCAATTAATATTATTAAG
GCTAGGTGATTTACGATCGCAACCTAAATTAATTTGAGTTTATTGATTTAAGA
Found at i:23777105 original size:106 final size:105
Alignment explanation
Indices: 23776895--23777167 Score: 305
Period size: 106 Copynumber: 2.6 Consensus size: 105
23776885 ATCGCATCTA
* * * ** * *
23776895 ATTTTATTAAGGTTAGTTGATTTACGATTGTAACCTAAATTTATTTGAGTTAGCTTATTTAATAT
1 ATTTTATTAAGGTTAGTTGATTTAAGATCGCAACCTAAATTTATTCAAGTTAGCTAATTTAAGAT
* * * * *
23776960 CGTAACTCTTCCACAGCTTACTGACCTACATTCACAGTTG
66 CGCAACTCTTACACAACTCACTAACCTACATTCACAGTTG
* *
23777000 ATTTTATTAAAGGTTAATTGATTTAAGATCGCAACCTAAATCTATTCAAGTTAGCTAATTTAAGA
1 ATTTTATT-AAGGTTAGTTGATTTAAGATCGCAACCTAAATTTATTCAAGTTAGCTAATTTAAGA
* * ** *
23777065 TTGCAACT-TCTACACAACTCACTAACTTATGTTCATAGTTG
65 TCGCAACTCT-TACACAACTCACTAACCTACATTCACAGTTG
* * * * *
23777106 ATTTTATTAAGGGTAGCTAATTTAAGATCGCAACCTAAATTTTTTCAAGTTAGCTGATTTAA
1 ATTTTATTAAGGTTAGTTGATTTAAGATCGCAACCTAAATTTATTCAAGTTAGCTAATTTAA
23777168 TATTACATTT
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
105 56 0.40
106 84 0.60
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (105 bp):
ATTTTATTAAGGTTAGTTGATTTAAGATCGCAACCTAAATTTATTCAAGTTAGCTAATTTAAGAT
CGCAACTCTTACACAACTCACTAACCTACATTCACAGTTG
Found at i:23777207 original size:105 final size:106
Alignment explanation
Indices: 23776983--23777174 Score: 260
Period size: 105 Copynumber: 1.8 Consensus size: 106
23776973 CAGCTTACTG
* * * * *
23776983 ACCTACATTCACAGTTGATTTTATTAAAGGTTAATTGATTTAAGATCGCAACCTAAATCTATTCA
1 ACCTACGTTCATAGTTGATTTTATTAAAGGGTAACTAATTTAAGATCGCAACCTAAATCTATTCA
*
23777048 AGTTAGCTAATTTAAGATTGCAACTTCTACACAACTCACTA
66 AGTTAGCTAATTTAAGATTACAACTTCTACACAACTCACTA
* * * * *
23777089 ACTTATGTTCATAGTTGATTTTATT-AAGGGTAGCTAATTTAAGATCGCAACCTAAATTTTTTCA
1 ACCTACGTTCATAGTTGATTTTATTAAAGGGTAACTAATTTAAGATCGCAACCTAAATCTATTCA
* *
23777153 AGTTAGCTGATTTAATATTACA
66 AGTTAGCTAATTTAAGATTACA
23777175 TTTCCTACAT
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
105 52 0.71
106 21 0.29
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (106 bp):
ACCTACGTTCATAGTTGATTTTATTAAAGGGTAACTAATTTAAGATCGCAACCTAAATCTATTCA
AGTTAGCTAATTTAAGATTACAACTTCTACACAACTCACTA
Found at i:23777222 original size:105 final size:105
Alignment explanation
Indices: 23777020--23777240 Score: 228
Period size: 105 Copynumber: 2.1 Consensus size: 105
23777010 AGGTTAATTG
*
23777020 ATTTAAGATCGCAACCTAAATCTATTCAAGTTAGCTAATTTAAGATTGCAACTTCTACACAACTC
1 ATTTAAGATCGCAACCTAAATCTATTCAAGTTAGCTAATTTAAGATTACAACTTCTACACAACTC
* * * ** * *
23777085 ACTAACTTATGTTCATAGTTGATTTTATTAAGGGTAGCTA
66 ACTAACCTACGTTCATAGCTGATAATACTAAGGGTAACTA
* * * * * * *
23777125 ATTTAAGATCGCAACCTAAATTTTTTCAAGTTAGCTGATTTAATATTAC-ATTTCCTACATAGCT
1 ATTTAAGATCGCAACCTAAATCTATTCAAGTTAGCTAATTTAAGATTACAACTT-CTACACAACT
** ** * * *
23777189 CGTTGGCCTACGTTCATAGCTGATAATACTAAGGTTAATTG
65 CACTAACCTACGTTCATAGCTGATAATACTAAGGGTAACTA
23777230 ATTTAAGATCG
1 ATTTAAGATCG
23777241 TAGCCACCGA
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
104 3 0.03
105 90 0.97
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (105 bp):
ATTTAAGATCGCAACCTAAATCTATTCAAGTTAGCTAATTTAAGATTACAACTTCTACACAACTC
ACTAACCTACGTTCATAGCTGATAATACTAAGGGTAACTA
Found at i:23778221 original size:31 final size:28
Alignment explanation
Indices: 23778179--23778267 Score: 90
Period size: 31 Copynumber: 3.0 Consensus size: 28
23778169 TTACACCATA
23778179 GGTCACCCAACTATGGGTTTGTTTCTTTTT
1 GGTCA-CCAACTATGGG-TTGTTTCTTTTT
*
23778209 GGGTCACTCAACTATGGAATTGTTTCTTTTT
1 -GGTCAC-CAACTATGG-GTTGTTTCTTTTT
* *
23778240 TGTCACCAAACTAT-GGTTGTTTTTTTTT
1 GGTCACC-AACTATGGGTTGTTTCTTTTT
23778268 CTAAATTGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
28 11 0.22
29 2 0.04
30 12 0.24
31 26 0.51
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.48
Consensus pattern (28 bp):
GGTCACCAACTATGGGTTGTTTCTTTTT
Found at i:23778523 original size:22 final size:24
Alignment explanation
Indices: 23778470--23778525 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 24
23778460 CTAATTCTAA
*
23778470 AAAAATATAT-ATATAAATTTTGT
1 AAAAATATATAATATAAAATTTGT
*
23778493 CAAAA-ATATAATA-AAAATTT-T
1 AAAAATATATAATATAAAATTTGT
23778514 AAAAATATATAA
1 AAAAATATATAA
23778526 AAATAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 5 0.18
22 16 0.57
23 7 0.25
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
AAAAATATATAATATAAAATTTGT
Found at i:23778526 original size:10 final size:10
Alignment explanation
Indices: 23778494--23778601 Score: 61
Period size: 10 Copynumber: 11.4 Consensus size: 10
23778484 AAATTTTGTC
23778494 AAAAATATAAT
1 AAAAATAT-AT
*
23778505 AAAAAT-TTT
1 AAAAATATAT
23778514 AAAAATATAT
1 AAAAATATAT
23778524 -AAAA-ATA-
1 AAAAATATAT
*
23778531 AAAAAT-TTT
1 AAAAATATAT
* * * *
23778540 GACAAGAAAT
1 AAAAATATAT
*
23778550 AATAATATAT
1 AAAAATATAT
23778560 -AAAAT-T-T
1 AAAAATATAT
*
23778567 AAACATATAT
1 AAAAATATAT
*
23778577 AAAAATGTAT
1 AAAAATATAT
23778587 AAAAATATAAT
1 AAAAATAT-AT
23778598 AAAA
1 AAAA
23778602 TTAATTTTTA
Statistics
Matches: 71, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
7 1 0.01
8 13 0.18
9 19 0.27
10 26 0.37
11 12 0.17
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAATATAT
Found at i:23778580 original size:53 final size:49
Alignment explanation
Indices: 23778484--23778582 Score: 135
Period size: 53 Copynumber: 1.9 Consensus size: 49
23778474 ATATATATAT
* *
23778484 AAATTTTGTCAAAAATATAATAAAAATTTTAAAAATATATAAAAATAAA
1 AAATTTTGACAAAAATATAATAAAAAATTTAAAAATATATAAAAATAAA
*
23778533 AAATTTTGACAAGAAATAATAATATATAAAATTTAAACATATATAAAAAT
1 AAATTTTGACAA-AAAT-ATAATA-A-AAAATTTAAAAATATATAAAAAT
23778583 GTATAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 11 0.26
50 4 0.09
51 6 0.14
52 1 0.02
53 21 0.49
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (49 bp):
AAATTTTGACAAAAATATAATAAAAAATTTAAAAATATATAAAAATAAA
Found at i:23778602 original size:20 final size:18
Alignment explanation
Indices: 23778494--23778604 Score: 68
Period size: 20 Copynumber: 5.9 Consensus size: 18
23778484 AAATTTTGTC
*
23778494 AAAAATATAATAAAAATTTT
1 AAAAATAT-AT-AAAATTAT
*
23778514 AAAAATATATAAAAATA-
1 AAAAATATATAAAATTAT
* *
23778531 AAAAAT-TTTGACAAGA-AAT
1 AAAAATATAT-A-AA-ATTAT
*
23778550 AATAATATATAAAATT-T
1 AAAAATATATAAAATTAT
*
23778567 AAACATATATAAAAATGTAT
1 AAAAATATAT-AAAAT-TAT
23778587 AAAAATATAATAAAATTA
1 AAAAATAT-ATAAAATTA
23778605 ATTTTTATAT
Statistics
Matches: 71, Mismatches: 10, Indels: 21
0.70 0.10 0.21
Matches are distributed among these distances:
16 2 0.03
17 17 0.24
18 15 0.21
19 12 0.17
20 23 0.32
21 2 0.03
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (18 bp):
AAAAATATATAAAATTAT
Found at i:23780293 original size:30 final size:31
Alignment explanation
Indices: 23780239--23780308 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
23780229 ACTGTTAATC
* *
23780239 AGTGACTATTTTGTCACTTTTTTTATAACGTT-
1 AGTGACTGTTTTGTCAC-TTTTTTA-AAAGTTG
23780271 AGTGACTGTTTTGTCA-TTTTTTAAAAGTTG
1 AGTGACTGTTTTGTCACTTTTTTAAAAGTTG
23780301 AGTGACTG
1 AGTGACTG
23780309 AAATGAAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 5 0.14
30 15 0.43
32 15 0.43
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.49
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTTAAAAGTTG
Found at i:23780431 original size:29 final size:29
Alignment explanation
Indices: 23780399--23780463 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
23780389 ATATTAATAT
*
23780399 AAAATTTAAATTTATTATTATAT-TTTTTG
1 AAAATTT-AATGTATTATTATATATTTTTG
* * *
23780428 AAAATATTTATGTATTTTTATATATTTTTT
1 AAAAT-TTAATGTATTATTATATATTTTTG
23780458 AAAATT
1 AAAATT
23780464 ATATTATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
AAAATTTAATGTATTATTATATATTTTTG
Found at i:23780513 original size:10 final size:10
Alignment explanation
Indices: 23780500--23780540 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
23780490 TTTTATTTTA
23780500 TTTTATATAT
1 TTTTATATAT
23780510 TTTTA-AT-T
1 TTTTATATAT
*
23780518 TAATTATATAT
1 T-TTTATATAT
23780529 TTTTATATAT
1 TTTTATATAT
23780539 TT
1 TT
23780541 CTTTGATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 2 0.08
9 5 0.19
10 17 0.65
11 2 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTATATAT
Found at i:23783384 original size:13 final size:11
Alignment explanation
Indices: 23783352--23783394 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
23783342 CCATTTTCAA
*
23783352 AATAAAATAAT
1 AATAAAATATT
23783363 AAT-AAATATCT
1 AATAAAATAT-T
23783374 AAGTAAAATATT
1 AA-TAAAATATT
23783386 AATAAAATA
1 AATAAAATA
23783395 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:23786065 original size:13 final size:13
Alignment explanation
Indices: 23786047--23786071 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23786037 TCAAACGATG
23786047 TTTTTCCACATTC
1 TTTTTCCACATTC
23786060 TTTTTCCACATT
1 TTTTTCCACATT
23786072 TTGCACGTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTTCCACATTC
Found at i:23788576 original size:12 final size:13
Alignment explanation
Indices: 23788538--23788584 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
23788528 TTAATATAAA
23788538 ATTATTTTTATAT
1 ATTATTTTTATAT
* *
23788551 ATT-TTTTAAAAT
1 ATTATTTTTATAT
23788563 ATTTATTTTTATAT
1 A-TTATTTTTATAT
23788577 ATTTATTT
1 A-TTATTT
23788585 GTATTTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
12 8 0.29
13 5 0.18
14 15 0.54
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTATTTTTATAT
Done.