Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 82 of 207
Found at i:23795560 original size:6 final size:7
Alignment explanation
Indices: 23795534--23795559 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23795524 TAGGAATCTT
23795534 TTTTTTA
1 TTTTTTA
23795541 TTTTTTA
1 TTTTTTA
23795548 TTTTTTA
1 TTTTTTA
23795555 TTTTT
1 TTTTT
23795560 ACTTTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:23797760 original size:22 final size:22
Alignment explanation
Indices: 23797728--23797774 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
23797718 CATTTAATTA
* *
23797728 ATTTTTTAAAATTAAAAAGAAT
1 ATTTTTAAAAATTAAAAAAAAT
23797750 ATTTTTAAAAATTAAAAAAAAT
1 ATTTTTAAAAATTAAAAAAAAT
23797772 ATT
1 ATT
23797775 AAAATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
ATTTTTAAAAATTAAAAAAAAT
Found at i:23801222 original size:125 final size:125
Alignment explanation
Indices: 23801061--23801317 Score: 435
Period size: 125 Copynumber: 2.1 Consensus size: 125
23801051 CTTTCCAAAA
* *
23801061 GAATATTAACTTCTATAATTATTACCTTAAAGATGTTGTAAATCATATCCACCAGGTAATCCTAC
1 GAATACTAACTTCTATAATTATTAACTTAAAGATGTTGTAAATCATATCCACCAGGTAATCCTAC
* * *
23801126 TCGCTAGGTCATTCTATCCGCCAAGCTATACAATTCGCCAGGCAATACTGTCCTCTAGGC
66 TCGCCAGGTAATTCTATCCGCCAAGCTATACAATTCGCCAGGCAATACTGTCCGCTAGGC
* *
23801186 GAATACTAACTTTTATAATTATTAACTTAAAGATGTTGTAAATCGTATCCACCAGGTAATCCTAC
1 GAATACTAACTTCTATAATTATTAACTTAAAGATGTTGTAAATCATATCCACCAGGTAATCCTAC
*
23801251 TCGCCAGGTAATTCTATCCGCCAAGCTATACTATTCGCCAGGCAATACTGTCCGCTAGGC
66 TCGCCAGGTAATTCTATCCGCCAAGCTATACAATTCGCCAGGCAATACTGTCCGCTAGGC
23801311 G-ATACTA
1 GAATACTA
23801318 TCCACTAGAC
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
124 6 0.05
125 118 0.95
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (125 bp):
GAATACTAACTTCTATAATTATTAACTTAAAGATGTTGTAAATCATATCCACCAGGTAATCCTAC
TCGCCAGGTAATTCTATCCGCCAAGCTATACAATTCGCCAGGCAATACTGTCCGCTAGGC
Found at i:23801272 original size:17 final size:17
Alignment explanation
Indices: 23801226--23801273 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
23801216 AGATGTTGTA
* *
23801226 AATCGTATCCACCAGGT
1 AATCCTATCCGCCAGGT
23801243 AATCCTA-CTCGCCAGGT
1 AATCCTATC-CGCCAGGT
*
23801260 AATTCTATCCGCCA
1 AATCCTATCCGCCA
23801274 AGCTATACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.04
17 24 0.92
18 1 0.04
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (17 bp):
AATCCTATCCGCCAGGT
Found at i:23801284 original size:17 final size:17
Alignment explanation
Indices: 23801252--23801320 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 17
23801242 TAATCCTACT
* *
23801252 CGCCAGGTAATTCTATC
1 CGCCAGGCAATACTATC
* * *
23801269 CGCCAAGCTATACTATT
1 CGCCAGGCAATACTATC
*
23801286 CGCCAGGCAATACTGTC
1 CGCCAGGCAATACTATC
* *
23801303 CGCTAGGCGATACTATC
1 CGCCAGGCAATACTATC
23801320 C
1 C
23801321 ACTAGACGGT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (17 bp):
CGCCAGGCAATACTATC
Found at i:23801316 original size:34 final size:34
Alignment explanation
Indices: 23801251--23801318 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
23801241 GTAATCCTAC
* * *
23801251 TCGCCAGGTAATTCTATCCGCCAAGCTATACTAT
1 TCGCCAGGCAATACTATCCGCCAAGCGATACTAT
* * *
23801285 TCGCCAGGCAATACTGTCCGCTAGGCGATACTAT
1 TCGCCAGGCAATACTATCCGCCAAGCGATACTAT
23801319 CCACTAGACG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (34 bp):
TCGCCAGGCAATACTATCCGCCAAGCGATACTAT
Found at i:23801381 original size:17 final size:17
Alignment explanation
Indices: 23801340--23801382 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
23801330 TATTGTTCGT
*
23801340 CAGACGATACTATCCGC
1 CAGATGATACTATCCGC
*
23801357 CAGGTGATACTTATCCGC
1 CAGATGATAC-TATCCGC
23801375 CA-ATGATA
1 CAGATGATA
23801383 GGAATACGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (17 bp):
CAGATGATACTATCCGC
Found at i:23806543 original size:21 final size:23
Alignment explanation
Indices: 23806519--23806567 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
23806509 AAGTCAATTT
* *
23806519 AAAACATTTA-TTTATTTT-AGA
1 AAAACATTTAGTCTATTTTCAAA
23806540 AAAA-ATTTAGTCTATTTTCAAA
1 AAAACATTTAGTCTATTTTCAAA
23806562 AAAACA
1 AAAACA
23806568 AACTAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.22
21 11 0.48
22 6 0.26
23 1 0.04
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (23 bp):
AAAACATTTAGTCTATTTTCAAA
Found at i:23815401 original size:10 final size:10
Alignment explanation
Indices: 23815386--23815470 Score: 63
Period size: 10 Copynumber: 8.7 Consensus size: 10
23815376 CAACCTAATT
23815386 TTTATTTTTA
1 TTTATTTTTA
23815396 TTTATTTATTA
1 TTTATTT-TTA
23815407 -TTATTTATTA
1 TTTATTT-TTA
*
23815417 TTTATTATTA
1 TTTATTTTTA
*
23815427 -TTATTTTTC
1 TTTATTTTTA
*
23815436 TTTA-CTTTA
1 TTTATTTTTA
*
23815445 TTT-TCTTTA
1 TTTATTTTTA
23815454 -TTATTTATTA
1 TTTATTT-TTA
*
23815464 CTTATTT
1 TTTATTT
23815471 GGATATTAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
8 2 0.03
9 20 0.32
10 26 0.42
11 14 0.23
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:23815405 original size:14 final size:14
Alignment explanation
Indices: 23815386--23815470 Score: 72
Period size: 14 Copynumber: 6.2 Consensus size: 14
23815376 CAACCTAATT
23815386 TTTATTTTTATTTA
1 TTTATTTTTATTTA
*
23815400 TTTATTATTATTTA
1 TTTATTTTTATTTA
23815414 -TTATTTATTA-TTA
1 TTTATTT-TTATTTA
*
23815427 -TTATTTTTCTTTA
1 TTTATTTTTATTTA
*
23815440 CTTTA-TTTTCTTTA
1 -TTTATTTTTATTTA
*
23815454 -TTATTTATTACTTA
1 TTTATTT-TTATTTA
23815468 TTT
1 TTT
23815471 GGATATTAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
12 5 0.08
13 19 0.32
14 30 0.51
15 5 0.08
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATTTTTATTTA
Found at i:23817680 original size:85 final size:85
Alignment explanation
Indices: 23817488--23817732 Score: 348
Period size: 85 Copynumber: 2.9 Consensus size: 85
23817478 CAGTTACTAT
* * **
23817488 CACTTGTTGTGGGTGCACAACATATTTGCAGATTAAACAAAATGCCACATGGTTCAT-ATCGAAC
1 CACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAAATGCCACTTACTTCATAATCGAAC
* * **
23817552 CACATATTTACAGTTGTTGC
66 CACACATTTGCAGTTGCCGC
*
23817572 CACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAAATGCCACTTATTTCATAATCGAAC
1 CACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAAATGCCACTTACTTCATAATCGAAC
23817637 CACACATTTGCAGTTGCCGC
66 CACACATTTGCAGTTGCCGC
* * * * *
23817657 CACTTCTTGTGAGTGCACAACATATTTGCAAATTAAACAAACTACCACTTACTTCATAATGGAAC
1 CACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAAATGCCACTTACTTCATAATCGAAC
23817722 CACACCATTTG
66 CACA-CATTTG
23817733 TAGATTAAAC
Statistics
Matches: 145, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
84 53 0.37
85 86 0.59
86 6 0.04
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (85 bp):
CACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAAATGCCACTTACTTCATAATCGAAC
CACACATTTGCAGTTGCCGC
Found at i:23818299 original size:29 final size:29
Alignment explanation
Indices: 23818267--23818432 Score: 110
Period size: 28 Copynumber: 5.8 Consensus size: 29
23818257 AAATAGGAGA
*
23818267 CAAAGCTATAAAATCTAAAAAATTTAGGG
1 CAAAACTATAAAATCTAAAAAATTTAGGG
*
23818296 CAAAATTATAAAATCT-AAAAA-TTATGGG
1 CAAAACTATAAAATCTAAAAAATTTA-GGG
* ** * * **
23818324 TAAATTTGTAAAAT-TTAAAAATCAAGGG
1 CAAAACTATAAAATCTAAAAAATTTAGGG
* * * *
23818352 TAAAACTATAAAAATCTAAAAAAATCAGAG
1 CAAAACTAT-AAAATCTAAAAAATTTAGGG
* * *
23818382 -AAAACTTTTAAATTTTAAAAAA--TAGGGG
1 CAAAAC-TATAAAATCTAAAAAATTTA-GGG
23818410 CAAAACTATAAAATCTAAAAAAT
1 CAAAACTATAAAATCTAAAAAAT
23818433 AAGGGACACA
Statistics
Matches: 105, Mismatches: 23, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
27 5 0.05
28 48 0.46
29 41 0.39
30 11 0.10
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.27
Consensus pattern (29 bp):
CAAAACTATAAAATCTAAAAAATTTAGGG
Found at i:23818343 original size:57 final size:56
Alignment explanation
Indices: 23818275--23818431 Score: 151
Period size: 58 Copynumber: 2.8 Consensus size: 56
23818265 GACAAAGCTA
* * * * *
23818275 TAAAATCTAAAAAATTTAGGGCAAAATTATAAAATCT-AAAAATTATGGGTAAA-TTT
1 TAAAATTTAAAAAA-TTAGGGCAAAACTATAAAATCTAAAAAAATA-GAGAAAACTTT
* *
23818331 GTAAAATTT-AAAAATCAAGGGTAAAACTATAAAAATCTAAAAAAATCAGAGAAAACTTT
1 -TAAAATTTAAAAAAT-TAGGGCAAAACTAT-AAAATCTAAAAAAAT-AGAGAAAACTTT
*
23818390 TAAATTTTAAAAAA-TAGGGGCAAAACTATAAAATCTAAAAAA
1 TAAAATTTAAAAAATTA-GGGCAAAACTATAAAATCTAAAAAA
23818432 TAAGGGACAC
Statistics
Matches: 83, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
55 1 0.01
56 16 0.19
57 28 0.34
58 29 0.35
59 9 0.11
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (56 bp):
TAAAATTTAAAAAATTAGGGCAAAACTATAAAATCTAAAAAAATAGAGAAAACTTT
Found at i:23818437 original size:29 final size:27
Alignment explanation
Indices: 23818240--23818433 Score: 122
Period size: 29 Copynumber: 6.8 Consensus size: 27
23818230 ATTTTGGGTC
* * *
23818240 AAACTGTAAAATTTGAAAAATAGGAGACA
1 AAACTATAAAATCTAAAAAATAGG-G-CA
*
23818269 AAGCTATAAAATCTAAAAAATTTAGGGCA
1 AAACTATAAAATCTAAAAAA--TAGGGCA
* * *
23818298 AAATTATAAAATCTAAAAATTATGGGTA
1 AAACTATAAAATCTAAAAAATA-GGGCA
** * * *
23818326 AATTTGTAAAAT-TTAAAAATCAAGGGTA
1 AAACTATAAAATCTAAAAAAT--AGGGCA
*
23818354 AAACTATAAAAATCTAAAAAAATCAGAG-A
1 AAACTAT-AAAATCT-AAAAAAT-AGGGCA
* * *
23818383 AAACTTTTAAATTTTAAAAAATAGGGGCA
1 AAAC-TATAAAATCTAAAAAATA-GGGCA
23818412 AAACTATAAAATCTAAAAAATA
1 AAACTATAAAATCTAAAAAATA
23818434 AGGGACACAC
Statistics
Matches: 129, Mismatches: 25, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
27 9 0.07
28 47 0.36
29 56 0.43
30 7 0.05
31 10 0.08
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26
Consensus pattern (27 bp):
AAACTATAAAATCTAAAAAATAGGGCA
Found at i:23818589 original size:12 final size:12
Alignment explanation
Indices: 23818572--23818602 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
23818562 GAGACACGGC
23818572 CGTGTGGCAAGT
1 CGTGTGGCAAGT
23818584 CGTGTGGCAAGT
1 CGTGTGGCAAGT
23818596 CGTGTGG
1 CGTGTGG
23818603 AGGGTCTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.16, G:0.45, T:0.26
Consensus pattern (12 bp):
CGTGTGGCAAGT
Found at i:23821145 original size:24 final size:25
Alignment explanation
Indices: 23821113--23821172 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 25
23821103 TAATTTATAT
*
23821113 TTTATATATC-ATTATATTAAATTA
1 TTTAAATATCTATTATATTAAATTA
23821137 TTTAAATATCATGTTATTATATTAAATTA
1 TTTAAATATC----TATTATATTAAATTA
23821166 TTTAAAT
1 TTTAAAT
23821173 CTTATTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 9 0.30
29 21 0.70
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTAAATATCTATTATATTAAATTA
Found at i:23822293 original size:34 final size:34
Alignment explanation
Indices: 23822226--23822313 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 34
23822216 ATATAGAAGT
* * *
23822226 TTTATTTCATTATACAAAG-ACAAACTCAGAAAA
1 TTTATATCAATATACAAAGAAAAAACTCAGAAAA
*
23822259 TTTATATCAATATACAAAGAAAAAACTCATAAAA
1 TTTATATCAATATACAAAGAAAAAACTCAGAAAA
* *
23822293 TTCATATTAATATAACAAAGA
1 TTTATATCAATAT-ACAAAGA
23822314 TGAACAAAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 17 0.36
34 23 0.49
35 7 0.15
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (34 bp):
TTTATATCAATATACAAAGAAAAAACTCAGAAAA
Found at i:23827484 original size:14 final size:14
Alignment explanation
Indices: 23827465--23827492 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23827455 TAAAACCACC
23827465 CTTACTATTTCGAG
1 CTTACTATTTCGAG
23827479 CTTACTATTTCGAG
1 CTTACTATTTCGAG
23827493 TCTCACCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (14 bp):
CTTACTATTTCGAG
Found at i:23827904 original size:19 final size:19
Alignment explanation
Indices: 23827871--23827927 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 19
23827861 ATTCTAACCA
*
23827871 TTTGAATTT-AAATTGACT
1 TTTGATTTTAAAATTGACT
23827889 TTTGATTTTAAAATTGACT
1 TTTGATTTTAAAATTGACT
23827908 TTTGATTTTAAAATTGACT
1 TTTGATTTTAAAATTGACT
23827927 T
1 T
23827928 GAAGTACTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
18 8 0.22
19 29 0.78
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGATTTTAAAATTGACT
Found at i:23828380 original size:64 final size:66
Alignment explanation
Indices: 23828306--23828443 Score: 244
Period size: 66 Copynumber: 2.1 Consensus size: 66
23828296 GTGGGTGGGT
*
23828306 TTAGGGTTAGCTTGTATTC-ATTTCTATTTGTTTAGGGTTTTTT-TTCATTTGGGCTAGATTTTT
1 TTAGGGTTAGCTTGTATTCGATTTCTATTTGTTTAGGGTTTTTTCCTCATTTGGGCTAGATTTTT
23828369 C
66 C
*
23828370 TTAGGGTTAGCTTGTATTCGTTTTCTATTTGTTTAGGGTTTTTTCCTCATTTGGGCTAGATTTTT
1 TTAGGGTTAGCTTGTATTCGATTTCTATTTGTTTAGGGTTTTTTCCTCATTTGGGCTAGATTTTT
23828435 C
66 C
23828436 TTAGGGTT
1 TTAGGGTT
23828444 TAGGTAAAAC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
64 19 0.27
65 23 0.33
66 28 0.40
ACGTcount: A:0.13, C:0.10, G:0.22, T:0.55
Consensus pattern (66 bp):
TTAGGGTTAGCTTGTATTCGATTTCTATTTGTTTAGGGTTTTTTCCTCATTTGGGCTAGATTTTT
C
Found at i:23828409 original size:32 final size:31
Alignment explanation
Indices: 23828304--23828409 Score: 85
Period size: 32 Copynumber: 3.3 Consensus size: 31
23828294 TGGTGGGTGG
*
23828304 GTTTAGGGTTAGCTTGTATTCATTTCTATTT
1 GTTTAGGGTTAGCTTGTATTCTTTTCTATTT
* *
23828335 GTTTAGGGTT---TT-TTTTCATTTGGGCTAGATTT
1 GTTTAGGGTTAGCTTGTATTC-TTT--TCT--ATTT
*
23828367 TTCTTAGGGTTAGCTTGTATTCGTTTTCTATTT
1 GT-TTAGGGTTAGCTTGTATTC-TTTTCTATTT
23828400 GTTTAGGGTT
1 GTTTAGGGTT
23828410 TTTTCCTCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 19
0.68 0.10 0.23
Matches are distributed among these distances:
27 4 0.07
28 4 0.07
30 2 0.04
31 10 0.18
32 13 0.23
33 13 0.23
35 2 0.04
36 2 0.04
37 7 0.12
ACGTcount: A:0.13, C:0.08, G:0.23, T:0.56
Consensus pattern (31 bp):
GTTTAGGGTTAGCTTGTATTCTTTTCTATTT
Found at i:23843864 original size:31 final size:30
Alignment explanation
Indices: 23843829--23843888 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23843819 GGAGGTGGGA
*
23843829 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
23843860 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
23843889 TAAAATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:23847622 original size:105 final size:105
Alignment explanation
Indices: 23847440--23847646 Score: 353
Period size: 105 Copynumber: 2.0 Consensus size: 105
23847430 ATGAGAAAAC
*
23847440 GAATAAATGCATACATTGGTACCACTAGAGTTTGATGTGCAGATAAAAAATGCAATGAGGGCTAG
1 GAATAAAGGCATACATTGGTACCACTAGAGTTTGATGTGCAGATAAAAAATGCAATGAGGGCTAG
*
23847505 GATTTAGGGAGTTAACCAAATTCAATGTGGCTTTTTTAAT
66 GATTTAGGGAGTTAACCAAATTCAATGTGGCCTTTTTAAT
* * *
23847545 GAATAAAGGCATACATTGGTGCCAGTGGAGTTTGATGTGCAGATAAAAAATGCAATG-GGAGCTA
1 GAATAAAGGCATACATTGGTACCACTAGAGTTTGATGTGCAGATAAAAAATGCAATGAGG-GCTA
23847609 GGATTTAGGGAGTTAACCAAATTCAATGTGGCCTTTTT
65 GGATTTAGGGAGTTAACCAAATTCAATGTGGCCTTTTT
23847647 GACGAAACAA
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 2 0.02
105 94 0.98
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (105 bp):
GAATAAAGGCATACATTGGTACCACTAGAGTTTGATGTGCAGATAAAAAATGCAATGAGGGCTAG
GATTTAGGGAGTTAACCAAATTCAATGTGGCCTTTTTAAT
Found at i:23850299 original size:25 final size:25
Alignment explanation
Indices: 23850252--23850314 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
23850242 ATACATGTAT
23850252 GCTCATACGAGC-G-ATAACAGTAA
1 GCTCATACGAGCTGAATAACAGTAA
* * *
23850275 GCTCCTCCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAACAGTAA
23850300 GCTCATACGAGCTGA
1 GCTCATACGAGCTGA
23850315 GTATTGATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 10 0.30
24 1 0.03
25 22 0.67
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.19
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACAGTAA
Found at i:23853458 original size:28 final size:28
Alignment explanation
Indices: 23853421--23853547 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
23853411 TAATGAGATT
* *
23853421 AGCACTAAGTGTGCGAGTTTAATTG-AA
1 AGCACTAAGTGTGCGAGTATAATGGTAA
* *
23853448 ATGCATTAAGTGTGAGAGTATAATGGTAA
1 A-GCACTAAGTGTGCGAGTATAATGGTAA
23853477 AGCACTAAGTGTGCGAGTATAATGGTAA
1 AGCACTAAGTGTGCGAGTATAATGGTAA
* * * ** *
23853505 AGAACTAAGTGTGCGAGTGTGATTATTA
1 AGCACTAAGTGTGCGAGTATAATGGTAA
23853533 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
23853548 TACTTATTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 1 0.01
28 81 0.95
29 3 0.04
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTATAATGGTAA
Found at i:23866950 original size:19 final size:19
Alignment explanation
Indices: 23866926--23866976 Score: 75
Period size: 21 Copynumber: 2.6 Consensus size: 19
23866916 AATCACATCT
23866926 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
23866945 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
23866966 TCTAAGATTGC
1 TCTAAGATTGC
23866977 TCATCCTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.36
21 18 0.64
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23867300 original size:5 final size:6
Alignment explanation
Indices: 23867285--23867309 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23867275 TTATGGCCAA
23867285 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
23867310 GATTGTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23873249 original size:24 final size:24
Alignment explanation
Indices: 23873199--23873250 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
23873189 AATCAAAGTC
* *
23873199 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
23873223 AAATATATTATACTCATAAATATT
1 AAATATATTATACTAATAAATACT
23873247 AAAT
1 AAAT
23873251 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:23873972 original size:31 final size:30
Alignment explanation
Indices: 23873928--23874029 Score: 91
Period size: 31 Copynumber: 3.3 Consensus size: 30
23873918 TAAGAATTTC
23873928 TAAAATTTTTAAAAATTATGAGAGGCTTAAT
1 TAAAA-TTTTAAAAATTATGAGAGGCTTAAT
* * * * *
23873959 TCAAACTTTTAAAACCTT-TTAAAGGCTTGA-
1 T-AAAATTTTAAAA-ATTATGAGAGGCTTAAT
23873989 TAATAATTTTTAAAAATTATGAGAGGCTTAAT
1 TAA-AA-TTTTAAAAATTATGAGAGGCTTAAT
*
23874021 TTAAATTTT
1 TAAAATTTT
23874030 CAGAAATTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 13
0.69 0.14 0.17
Matches are distributed among these distances:
29 2 0.04
30 8 0.15
31 37 0.69
32 7 0.13
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (30 bp):
TAAAATTTTAAAAATTATGAGAGGCTTAAT
Found at i:23880919 original size:27 final size:27
Alignment explanation
Indices: 23880885--23880936 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23880875 CCAATGAATC
23880885 GGGGAATCAGCACACAGCAACCCCTTG
1 GGGGAATCAGCACACAGCAACCCCTTG
**
23880912 GGGGAATCAGCACTTAGCAACCCCT
1 GGGGAATCAGCACACAGCAACCCCT
23880937 GCACATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACACAGCAACCCCTTG
Found at i:23881197 original size:102 final size:102
Alignment explanation
Indices: 23880850--23881216 Score: 619
Period size: 103 Copynumber: 3.6 Consensus size: 102
23880840 TAACCGTTAT
* *
23880850 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
*
23880915 GAATCAGCACTTAGCAA-CCCCTGCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
* * ** *
23880951 CGATGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
* * *
23881016 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATG
23881054 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
23881119 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
23881156 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
23881217 TATATGCAAT
Statistics
Matches: 245, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
101 75 0.31
102 77 0.31
103 93 0.38
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.18
Consensus pattern (102 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
Found at i:23881840 original size:11 final size:12
Alignment explanation
Indices: 23881812--23881845 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
23881802 GCCCAAACGT
23881812 CGAAATTTTTGAA
1 CGAAATTTTT-AA
23881825 CGAAATTTTT-A
1 CGAAATTTTTAA
23881836 CGAAATTTTT
1 CGAAATTTTT
23881846 CCGTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
13 10 0.48
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (12 bp):
CGAAATTTTTAA
Found at i:23884876 original size:84 final size:84
Alignment explanation
Indices: 23884735--23884902 Score: 309
Period size: 84 Copynumber: 2.0 Consensus size: 84
23884725 TTTCATGGCA
23884735 TTTTTGCATTTTATTCAATTTGGCCCTTAATGTATGAAATTAATAATTAAGCTTTACAGTTTACC
1 TTTTTGCATTTTATTCAATTTGGCCCTTAATGTATGAAATTAATAATTAAGCTTTACAGTTTACC
*
23884800 CCTTTCTTAAACTAAGCTT
66 CCTTTCTTAAAATAAGCTT
* *
23884819 TTTTTTCATTTTATTCAATTTGGTCCTTAATGTATGAAATTAATAATTAAGCTTTACAGTTTACC
1 TTTTTGCATTTTATTCAATTTGGCCCTTAATGTATGAAATTAATAATTAAGCTTTACAGTTTACC
23884884 CCTTTCTTAAAATAAGCTT
66 CCTTTCTTAAAATAAGCTT
23884903 AATTTTTATC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.46
Consensus pattern (84 bp):
TTTTTGCATTTTATTCAATTTGGCCCTTAATGTATGAAATTAATAATTAAGCTTTACAGTTTACC
CCTTTCTTAAAATAAGCTT
Found at i:23887892 original size:15 final size:15
Alignment explanation
Indices: 23887872--23887902 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23887862 TAAATATATA
23887872 TAATTATATTTAATT
1 TAATTATATTTAATT
*
23887887 TAATTATATTTTATT
1 TAATTATATTTAATT
23887902 T
1 T
23887903 TATTTTGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TAATTATATTTAATT
Found at i:23890001 original size:16 final size:16
Alignment explanation
Indices: 23889980--23890015 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
23889970 TTTGGTTCAC
23889980 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23889996 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23890012 TGTA
1 TGTA
23890016 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23890062 original size:45 final size:44
Alignment explanation
Indices: 23889996--23890086 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
23889986 GGATTAGAGG
* * *
23889996 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
23890041 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
23890085 TG
1 TG
23890087 GAATAGAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 18 0.46
45 21 0.54
ACGTcount: A:0.30, C:0.05, G:0.29, T:0.36
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:23890272 original size:18 final size:17
Alignment explanation
Indices: 23890251--23890285 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23890241 TTATTATTAA
*
23890251 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23890269 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23890286 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23890422 original size:156 final size:157
Alignment explanation
Indices: 23890138--23890453 Score: 546
Period size: 156 Copynumber: 2.0 Consensus size: 157
23890128 TAGAATACCC
*
23890138 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * ** *
23890203 TTATCAGTAATAAATTTTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23890268 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
23890294 TTAGCAGAAATTAT-TTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
1 TTAGCAGAAATT-TGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
23890358 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
65 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
23890423 ATATATAATTTAATAAAATTCTTAATAA
130 ATATATAATTTAATAAAATTCTTAATAA
23890451 TTA
1 TTA
23890454 ATATTCTTAT
Statistics
Matches: 151, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
156 143 0.95
157 8 0.05
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23890424 original size:16 final size:16
Alignment explanation
Indices: 23890387--23890428 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23890377 TTAATCATAT
*
23890387 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23890403 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23890418 TTAAAATATAT
1 TTAAAATATAT
23890429 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23890435 original size:14 final size:15
Alignment explanation
Indices: 23890396--23890437 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23890386 TTTAAACATA
*
23890396 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23890411 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23890425 A-TATAATTTAATA
1 ATTATAATTAAATA
23890438 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23890487 original size:61 final size:60
Alignment explanation
Indices: 23890422--23890609 Score: 174
Period size: 61 Copynumber: 3.1 Consensus size: 60
23890412 TTATAATTAA
23890422 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATACGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA-GAATTTACTCAAATCAT
* * * * * * * *
23890483 AATATATGATACT-GTAAAA-T-AT-A-AATTAACATAATTATTATTA-AATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTCTTAATAATT-A-AT-ATTCTTA-TAGAATTTACTCA-AATCA
*
23890541 A
60 T
23890542 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA-GAATTTACTCAAATCAT
23890603 AATATAT
1 AATATAT
23890610 GATACTGTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
57 4 0.04
58 5 0.05
59 28 0.29
60 14 0.15
61 35 0.37
62 5 0.05
63 4 0.04
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATAGAATTTACTCAAATCAT
Found at i:23890526 original size:120 final size:120
Alignment explanation
Indices: 23890390--23890691 Score: 497
Period size: 120 Copynumber: 2.5 Consensus size: 120
23890380 ATCATATTTA
23890390 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23890455 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAAATT-
66 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGT-AAATGA-AAATTG
23890510 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23890575 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAATGAAAATTG
66 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAAATTG
* * * *
23890630 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA-AATAATT-TAAATAATTA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAA-AATTCTTAATAATTA
23890692 TAACTAATAA
Statistics
Matches: 174, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
118 11 0.06
119 53 0.30
120 110 0.63
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAAATTG
Found at i:23890555 original size:14 final size:15
Alignment explanation
Indices: 23890506--23890557 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23890496 GTAAAATATA
23890506 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23890521 TATTAAATATATTAT
1 AATTAAATATATTAT
23890536 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23890549 AATTTAATA
1 AATTAAATA
23890558 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23890792 original size:92 final size:89
Alignment explanation
Indices: 23890696--23890902 Score: 256
Period size: 92 Copynumber: 2.3 Consensus size: 89
23890686 TAATTATAAC
* * ** *
23890696 TAATAAATTATATTTTATGAATTTGTTTAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATT-T-TTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAAT-A
* *
23890760 TTAATAT-TAAATTTCATAAAATTCTTGA
62 GTAATATAT-AATTTCATAAAATTCTTAA
23890788 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAA-TTT-TTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
*
23890853 GATATATAATTTCATAAAATTCTTAA
64 AATATATAATTTCATAAAATTCTTAA
23890879 TAATAAAATTTTTATATGAATTTA
1 TAAT-AAATTTTTATATGAATTTA
23890903 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
90 13 0.13
91 31 0.30
92 53 0.52
93 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (89 bp):
TAATAAATTTTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGTAA
TATATAATTTCATAAAATTCTTAA
Found at i:23894241 original size:97 final size:97
Alignment explanation
Indices: 23894134--23894466 Score: 648
Period size: 97 Copynumber: 3.4 Consensus size: 97
23894124 TTTAATAACA
23894134 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
1 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
*
23894199 TAAAATATGCAGATTTAATCTTAAATTTGGAT
66 TAAAATATGCAGATTTAATCTTAAATTTGGAC
23894231 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
1 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
23894296 TAAAATATGCAGATTTAATCTTAAATTTGGAC
66 TAAAATATGCAGATTTAATCTTAAATTTGGAC
*
23894328 ATTATATAGGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
1 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
23894393 TAAAATATGCAGATTTAATCTTAAATTTGGAC
66 TAAAATATGCAGATTTAATCTTAAATTTGGAC
23894425 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATA
1 ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATA
23894467 CATAATTTAA
Statistics
Matches: 233, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 233 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (97 bp):
ATTATATAAGCATCGAAATTGGAACTTGATTGATTGTTTATATAAGTACCGAATTATATTTTAAT
TAAAATATGCAGATTTAATCTTAAATTTGGAC
Found at i:23894569 original size:13 final size:13
Alignment explanation
Indices: 23894551--23894577 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23894541 TAGAAACAAC
23894551 TATATTGTTTAAA
1 TATATTGTTTAAA
23894564 TATATTGTTTAAA
1 TATATTGTTTAAA
23894577 T
1 T
23894578 TAAACCGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TATATTGTTTAAA
Found at i:23897059 original size:22 final size:21
Alignment explanation
Indices: 23897018--23897064 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
23897008 TTTCAATCTT
*
23897018 TTTTTTTCATTTATATTATTG
1 TTTTTTTCATTTATATTATTC
*
23897039 TTTTTTT-ATTTTATTTCTATTC
1 TTTTTTTCA-TTTATAT-TATTC
23897061 TTTT
1 TTTT
23897065 AAAACTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 13 0.59
22 8 0.36
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTTCATTTATATTATTC
Found at i:23902925 original size:21 final size:21
Alignment explanation
Indices: 23902897--23902949 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
23902887 ATACTTCACT
*
23902897 TGAAAAAAAAAG-AAAATTAA
1 TGAAAAAAAAAGAAAAATGAA
*
23902917 TGAAAAAAAAAGAAAAATGAG
1 TGAAAAAAAAAGAAAAATGAA
23902938 TGAAAAAGAAAA
1 TGAAAAA-AAAA
23902950 AGGAGAGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 12 0.41
21 13 0.45
22 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (21 bp):
TGAAAAAAAAAGAAAAATGAA
Found at i:23902935 original size:17 final size:17
Alignment explanation
Indices: 23902897--23902950 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
23902887 ATACTTCACT
23902897 TGAAAAAAAAAGAAAATTAA
1 TGAAAAAAAAAG-AAA--AA
23902917 TGAAAAAAAAAGAAAAA
1 TGAAAAAAAAAGAAAAA
***
23902934 TGAGTGAAAAAGAAAAA
1 TGAAAAAAAAAGAAAAA
23902951 GGAGAGGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.52
19 3 0.10
20 12 0.39
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (17 bp):
TGAAAAAAAAAGAAAAA
Found at i:23904117 original size:44 final size:44
Alignment explanation
Indices: 23904069--23904531 Score: 242
Period size: 44 Copynumber: 10.5 Consensus size: 44
23904059 CCGGTAGTTC
* * *
23904069 TATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * * ** * *
23904113 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * * *
23904157 TACCTCCCTGAG-ATTACAGTGGAGTACATTGAAG-CTAGTAGTTC-
1 TATCTCCCTGAGCA--GCAGTGGAGTAGATTGAAGATTA-CAGATCT
* * *
23904201 TATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * * ** *
23904245 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAGATTT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * ** * *
23904289 TACCTCCCTGAG-ATTACGGTGGAGTACATTGAA-ACCAGTAGTTC-
1 TATCTCCCTGAGCA--GCAGTGGAGTAGATTGAAGATTA-CAGATCT
* * *
23904333 TATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * ** *
23904377 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATGGCAGATTT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * * * * * *
23904421 TACCTCCTTGAG-ATTACAGTGGAGTACATTAAAG-TCGATAGTTC-
1 TATCTCCCTGAGCA--GCAGTGGAGTAGATTGAAGAT-TACAGATCT
* * *
23904465 TATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
* *
23904509 TATCTCCCTAAGCAGTAGTGGAG
1 TATCTCCCTGAGCAGCAGTGGAG
23904532 CAGACAGAAA
Statistics
Matches: 293, Mismatches: 108, Indels: 36
0.67 0.25 0.08
Matches are distributed among these distances:
43 60 0.20
44 183 0.62
45 50 0.17
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTACAGATCT
Found at i:23904177 original size:132 final size:132
Alignment explanation
Indices: 23904000--23904534 Score: 882
Period size: 132 Copynumber: 4.1 Consensus size: 132
23903990 CCTCGGTTGC
23904000 AGTGGAGCAGGTCGATAG-T---AGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGGTCGA-AGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCC
*
23904061 GGTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGC
65 AGTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGC
23904126 AGT
130 AGT
* *
23904129 AGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCA
* *
23904194 GTAGTTCTATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCA
66 GTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCA
23904259 GT
131 GT
* * * *
23904261 AGTGGAGCAGATCGAAAATGGCAGATTTTACCTCCCTGAGATTACGGTGGAGTACATTGAAACCA
1 AGTGGAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCA
23904326 GTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCA
66 GTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCA
23904391 GT
131 GT
* * * *
23904393 AGTGGAGTAGGTCGAAGATGGCAGATTTTACCTCCTTGAGATTACAGTGGAGTACATTAAAGTC-
1 AGTGGAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCA
* *
23904457 GATAGTTCTATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGC
66 G-TAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGC
23904522 AGT
130 AGT
23904525 AGTGGAGCAG
1 AGTGGAGCAG
23904535 ACAGAAAAAA
Statistics
Matches: 377, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
128 2 0.01
129 16 0.04
131 1 0.00
132 358 0.95
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (132 bp):
AGTGGAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCA
GTAGTTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCA
GT
Found at i:23904573 original size:132 final size:130
Alignment explanation
Indices: 23904021--23904672 Score: 726
Period size: 132 Copynumber: 5.0 Consensus size: 130
23904011 TCGATAGTAG
* *
23904021 ATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCGGTAGTTCTATCTCCCTGGGCAGCA
1 ATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCC-ATAGTTCTATCTCCCTGGGCAGCA
* * * **
23904086 GAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGC
65 GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA-GACGAAAAAAGC
**
23904151 GG
129 CA
* * *
23904153 ATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCTAGTAGTTCTATCTCCCTGGGTAGCA
1 ATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCA-TAGTTCTATCTCCCTGGGCAGCA
* *
23904218 GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAAATGG
65 GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAGC
23904282 CA
129 CA
*
23904284 GATTTTACCTCCCTGAGATTACGGTGGAGTACATTGAAA-CCAGTAGTTCTATCTCCCTGGGCAG
1 -ATTTTACCTCCCTGAGATTACAGTGGAGTACATT-AAAGCCA-TAGTTCTATCTCCCTGGGCAG
* * * * *
23904348 CAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTCG-AAGAT
63 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA-GACGAAAAAA
*
23904412 GGCA
127 GCCA
* * *
23904416 GATTTTACCTCCTTGAGATTACAGTGGAGTACATTAAAGTCGATAGTTCTATCTCCTTGGGCAGC
1 -ATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAG-CCATAGTTCTATCTCCCTGGGCAGC
*
23904481 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAA
64 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAAAAG
23904546 CCA
128 CCA
** * * *** * * ** * * *
23904549 ATCCTATCTCCCTGA-AGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAGACAGT
1 ATTTTACCTCCCTGAGA-TTACAGTGGAGTACATTAAAGCCATAGTTC-TATCTCCCTGGGCAGC
** * * *
23904613 AGTGGAGCAGATTG--CATCA-AG-TCTTATCTCCCTAAGCAGTAGTAGAGCAGACGGAAAAAA
64 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAAAA
23904673 AACCAATCCT
Statistics
Matches: 456, Mismatches: 53, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
128 37 0.08
129 2 0.00
130 3 0.01
131 15 0.03
132 389 0.85
133 10 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (130 bp):
ATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCATAGTTCTATCTCCCTGGGCAGCAG
TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAGCCA
Found at i:23904603 original size:264 final size:264
Alignment explanation
Indices: 23904025--23904662 Score: 826
Period size: 264 Copynumber: 2.4 Consensus size: 264
23904015 TAGTAGATTT
* * * *** *
23904025 TACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCGGTAGTTCTATCTCCCTGGGCAGCAGAGG
1 TACCTCCCTGAGATTACAGTGGAGCACATTAAAACCACAAATTCTATCTCCCTGGGCAGCAGAGG
*
23904090 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCGGAT
66 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCAGAT
* * *
23904155 TTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCTAGTAGTTCTATCTCCCTGGGTAGCAGT
131 TTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCGAGTAGTTCTATCTCCCTGGGCAGCAGT
***
23904220 GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAG
196 GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAAAACCAG
**
23904285 ATTT
261 ATCC
* * * ** *
23904289 TACCTCCCTGAGATTACGGTGGAGTACATTGAAACCAGTAGTTCTATCTCCCTGGGCAGCAGAGG
1 TACCTCCCTGAGATTACAGTGGAGCACATTAAAACCACAAATTCTATCTCCCTGGGCAGCAGAGG
*
23904354 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATGGCAGAT
66 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCAGAT
* *
23904419 TTTACCTCCTTGAGATTACAGTGGAGTACATTAAAGTCGA-TAGTTCTATCTCCTTGGGCAGCAG
131 TTTACCTCCCTGAGATTACAGTGGAGTACATTAAAG-CGAGTAGTTCTATCTCCCTGGGCAGCAG
23904483 TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAAAAAAC
195 TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G-AAAAAAC
23904547 CA-ATCC
258 CAGATCC
* * ** * * * *
23904553 TATCTCCCTGA-AGTTGCAGTGGAGCGGATTAAAACCACAAA-TCTTATCTCCCTAGACAGTAGT
1 TACCTCCCTGAGA-TTACAGTGGAGCACATTAAAACCACAAATTC-TATCTCCCTGGGCAGCAGA
** * * *
23904616 GGAGCAGATTG--CATCA-AG-TCTTATCTCCCTAAGCAGTAGTAGAGCAG
64 GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
23904663 ACGGAAAAAA
Statistics
Matches: 334, Mismatches: 35, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
260 27 0.08
261 2 0.01
262 3 0.01
263 4 0.01
264 290 0.87
265 8 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (264 bp):
TACCTCCCTGAGATTACAGTGGAGCACATTAAAACCACAAATTCTATCTCCCTGGGCAGCAGAGG
AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCAGAT
TTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCGAGTAGTTCTATCTCCCTGGGCAGCAGT
GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAAAACCAG
ATCC
Found at i:23904705 original size:129 final size:128
Alignment explanation
Indices: 23904506--23904774 Score: 450
Period size: 129 Copynumber: 2.1 Consensus size: 128
23904496 AGATTACAGA
*
23904506 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTAAGCAGTAGTAGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCA
* * *
23904571 GTGGAGCGGATTAAAACCACAAATCTTATCTCCCT-AGACAGTAGTGGAGCAGATTGCATCAAG
66 GTGGAGCAGATTAAAACAACAAATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGCATCAAG
*
23904634 TCTTATCTCCCTAAGCAGTAGTAGAGCAGACGGAAAAAAAACCAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTAAGCAGTAGTAGAGCAGACAG-AAAAAAACCAATCCTATCTCCCTGAAGTTGC
* *
23904699 AGTGGAGCAGATTAAAACAACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAG
65 AGTGGAGCAGATTAAAACAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
23904763 TCTTATCTCCCT
1 TCTTATCTCCCT
23904775 GAAGTTGCAG
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
128 31 0.23
129 99 0.75
130 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (128 bp):
TCTTATCTCCCTAAGCAGTAGTAGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAACAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:23904741 original size:40 final size:41
Alignment explanation
Indices: 23904501--23904741 Score: 120
Period size: 44 Copynumber: 5.6 Consensus size: 41
23904491 ATTGAAGATT
** *
23904501 ACAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAAAAA
1 ACAGATCTTATCTCCCTGAAGC---AGTGGAGCAGA-TTAAAACA
* * *
23904545 ACCA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC
1 A-CAGATCTTATCTCCCTGAA---GCAGTGGAGCAGATTAAAACA
* * ** *
23904589 ACAAATCTTATCTCCCTAGACAGTAGTGGAGCAGATTGCATC-
1 ACAGATCTTATCTCCCT-GA-AGCAGTGGAGCAGATTAAAACA
** *
23904631 A-AG-TCTTATCTCCCT-AAGCAGTAGTAGAGCAGACGGAAAAAAA
1 ACAGATCTTATCTCCCTGAAGCAGT-G--GAGCAGA--TTAAAACA
*
23904674 ACCA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACA
1 A-CAGATCTTATCTCCCTGAA---GCAGTGGAGCAGATTAAAACA
23904718 ACAGATCTTATCTCCCT-AAGCAGT
1 ACAGATCTTATCTCCCTGAAGCAGT
23904742 AGTGGAGTAG
Statistics
Matches: 150, Mismatches: 25, Indels: 48
0.67 0.11 0.22
Matches are distributed among these distances:
37 5 0.03
38 2 0.01
40 24 0.16
41 1 0.01
42 2 0.01
43 22 0.15
44 48 0.32
45 28 0.19
46 10 0.07
48 3 0.02
49 5 0.03
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (41 bp):
ACAGATCTTATCTCCCTGAAGCAGTGGAGCAGATTAAAACA
Found at i:23906182 original size:13 final size:13
Alignment explanation
Indices: 23906161--23906216 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
23906151 GGTCCCTGAC
*
23906161 TTCTTTTTATTAT
1 TTCTCTTTATTAT
23906174 TTCTCTTTATTAT
1 TTCTCTTTATTAT
*
23906187 TT-TGTTTATTTAT
1 TTCTCTTTA-TTAT
23906200 TGT-TCTTTTATTAT
1 T-TCTC-TTTATTAT
23906214 TTC
1 TTC
23906217 CATTTATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.14
13 20 0.56
14 7 0.19
15 4 0.11
ACGTcount: A:0.14, C:0.09, G:0.04, T:0.73
Consensus pattern (13 bp):
TTCTCTTTATTAT
Found at i:23914184 original size:8 final size:9
Alignment explanation
Indices: 23914163--23914194 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
23914153 AATTATTTAA
23914163 AAAAATTAT
1 AAAAATTAT
23914172 AAAAATTAT
1 AAAAATTAT
*
23914181 AAAAAATAT
1 AAAAATTAT
23914190 AAAAA
1 AAAAA
23914195 CTTTCAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (9 bp):
AAAAATTAT
Found at i:23922623 original size:25 final size:25
Alignment explanation
Indices: 23922587--23922640 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
23922577 GACATTACGT
* ** *
23922587 CACATAGCCTTTACAGGTAACTTTC
1 CACATAGACTTTACAAATAACTTGC
23922612 CACATAGACTTTACAAATAACTTGC
1 CACATAGACTTTACAAATAACTTGC
23922637 CACA
1 CACA
23922641 AAGGCTTCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.28, G:0.09, T:0.28
Consensus pattern (25 bp):
CACATAGACTTTACAAATAACTTGC
Found at i:23922689 original size:26 final size:26
Alignment explanation
Indices: 23922624--23922698 Score: 107
Period size: 25 Copynumber: 2.9 Consensus size: 26
23922614 CATAGACTTT
* *
23922624 ACAAATAACTTGCCACAAAGGCTTCC
1 ACAAATAAATAGCCACAAAGGCTTCC
23922650 -CAAATAAATAGCCACAAAGGCTTCC
1 ACAAATAAATAGCCACAAAGGCTTCC
* *
23922675 ACAAATAAATCGCCATAAAGGCTT
1 ACAAATAAATAGCCACAAAGGCTT
23922699 TCCAACCAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 23 0.52
26 21 0.48
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.19
Consensus pattern (26 bp):
ACAAATAAATAGCCACAAAGGCTTCC
Found at i:23922715 original size:51 final size:51
Alignment explanation
Indices: 23922624--23922723 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
23922614 CATAGACTTT
* * * *
23922624 ACAAATAACTTGCCACAAAGGCTTCCCAAATAAATAGCCACAAAGGCTTCC
1 ACAAATAAATCGCCACAAAGGCTTCCCAAACAAATAGCCACAAAAGCTTCC
* * * * *
23922675 ACAAATAAATCGCCATAAAGGCTTTCCAACCAATTCGCCACAAAAGCTT
1 ACAAATAAATCGCCACAAAGGCTTCCCAAACAAATAGCCACAAAAGCTT
23922724 GGTTTGGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.41, C:0.29, G:0.11, T:0.19
Consensus pattern (51 bp):
ACAAATAAATCGCCACAAAGGCTTCCCAAACAAATAGCCACAAAAGCTTCC
Found at i:23924779 original size:26 final size:25
Alignment explanation
Indices: 23924744--23924809 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
23924734 GCAGCTCTTA
* **
23924744 TGAGCGTCCCGTTATATTGCTCTTCG
1 TGAGCTTCCCGTTA-AAGGCTCTTCG
*
23924770 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCG-TTAAAGGCTCTTCG
*
23924796 TAAGCTTCCCGTTA
1 TGAGCTTCCCGTTA
23924810 GTGCTCACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 28 0.82
27 3 0.09
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (25 bp):
TGAGCTTCCCGTTAAAGGCTCTTCG
Found at i:23924878 original size:24 final size:24
Alignment explanation
Indices: 23924851--23924904 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
23924841 TCTGGTGCTT
23924851 CCGTTAATTACTCTTCAGAGCTAC
1 CCGTTAATTACTCTTCAGAGCTAC
* **
23924875 CCGTTAATTGCTCTTTGGAGCTAC
1 CCGTTAATTACTCTTCAGAGCTAC
23924899 CCGTTA
1 CCGTTA
23924905 TATTGCCCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (24 bp):
CCGTTAATTACTCTTCAGAGCTAC
Found at i:23927830 original size:57 final size:57
Alignment explanation
Indices: 23927737--23927845 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
23927727 AATTCGGATT
* * *
23927737 ACCCGTCCGGGCTAAATCCATTTTCCATATATTCTTCGGGAGGGCTATATCAAGATC
1 ACCCATCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGACTATATCAAGATC
* *
23927794 ACCCATCCGGGCTAGAT-CTTTTTCACACATATTCTTCGGGAGGACTATATCA
1 ACCCATCCGGGCTAAATCCATTTTC-CACATATTCTTCGGGAGGACTATATCA
23927846 GGATAGGATC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 6 0.13
57 40 0.87
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (57 bp):
ACCCATCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGACTATATCAAGATC
Found at i:23930051 original size:109 final size:109
Alignment explanation
Indices: 23929920--23930140 Score: 442
Period size: 109 Copynumber: 2.0 Consensus size: 109
23929910 AAAATTTTCG
23929920 AGGTATTACATATGGTGTGGTCTTAAAGATAATCAATTCTCCTACAACTTTCTCATGCACTTAAT
1 AGGTATTACATATGGTGTGGTCTTAAAGATAATCAATTCTCCTACAACTTTCTCATGCACTTAAT
23929985 AGGCTCTTAGTGCTCAACCAAAATTCTGGGGCGTACTCTTTCTT
66 AGGCTCTTAGTGCTCAACCAAAATTCTGGGGCGTACTCTTTCTT
23930029 AGGTATTACATATGGTGTGGTCTTAAAGATAATCAATTCTCCTACAACTTTCTCATGCACTTAAT
1 AGGTATTACATATGGTGTGGTCTTAAAGATAATCAATTCTCCTACAACTTTCTCATGCACTTAAT
23930094 AGGCTCTTAGTGCTCAACCAAAATTCTGGGGCGTACTCTTTCTT
66 AGGCTCTTAGTGCTCAACCAAAATTCTGGGGCGTACTCTTTCTT
23930138 AGG
1 AGG
23930141 CGTGCTCTTC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 112 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (109 bp):
AGGTATTACATATGGTGTGGTCTTAAAGATAATCAATTCTCCTACAACTTTCTCATGCACTTAAT
AGGCTCTTAGTGCTCAACCAAAATTCTGGGGCGTACTCTTTCTT
Found at i:23934361 original size:17 final size:17
Alignment explanation
Indices: 23934311--23934361 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
23934301 AAATAATTGA
*
23934311 GATAAAAATAAATAAAT
1 GATAAAAATAAATAAAC
* * *
23934328 AAGAAAAATAAACAAAC
1 GATAAAAATAAATAAAC
*
23934345 GATAAAAATCAATAAAC
1 GATAAAAATAAATAAAC
23934362 CAATCAGGAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.71, C:0.08, G:0.06, T:0.16
Consensus pattern (17 bp):
GATAAAAATAAATAAAC
Found at i:23949822 original size:427 final size:428
Alignment explanation
Indices: 23949027--23949882 Score: 1633
Period size: 427 Copynumber: 2.0 Consensus size: 428
23949017 TTCTTCAGAT
*
23949027 TCCACCATGAAGGCGTTCCCTTACAAAGATAGCCACAAAGACTTTCCTTTCAGAGTCTCACTACA
1 TCCACCATGAAGGCGTTCCCTTACAAAGATAGCCACAAAGACTTTCCTTTCAGAGTCTCACCACA
23949092 AAGGTGTCCTTCTAACAGAGGGAGCCATAAAGGCATTCTTTTTATCAAAGATCGCCACTGATGGA
66 AAGGTGTCCTTCTAACAGAGGGAGCCATAAAGGCATTCTTTTTATCAAAGATCGCCACTGATGGA
23949157 CGTCGAAACCACCAAATATAAATTCCTACGACAAATATAACAGTAAATTGAAATATATAGCAGTA
131 CGTCGAAACCACCAAATATAAATTCCTACGACAAATATAACAGTAAATTGAAATATATAGCAGTA
23949222 GGGTCGAATCCATAGGGACTGGTTATCTAATTTCACATTTTCTTATGACCAGATTCGCTGTCGCA
196 GGGTCGAATCCATAGGGACTGGTTATCTAATTTCACATTTTCTTATGACCAGATTCGCTGTCGCA
*
23949287 GTCACAGTCGTGCCCACGACCTTTGCGTAGTAATGCTAAAATAAATAAATAAAAATGGGATATCT
261 GTCACAGTCGTGCCCACGACCTTTGCGTAGTAATGCTAAAATAAATAAATAAAAATGGGAGATCT
* *
23949352 AAATTGATTAAGATAATAAAATAAGGAAATATGAAGTGTAATAAAATAAAATAAAAACATATTT-
326 AAATTGATTAAGATAAAAAAATAAGGAAATATGAAGTGTAATAAAATAAAATAAAAACAGATTTA
23949416 AAAATGCAAAAATAAATTTAAGAAAATGAAATAAATTG
391 AAAATGCAAAAATAAATTTAAGAAAATGAAATAAATTG
*
23949454 TCCACCATGAAGGCGTTCCCTTACAAAGATAGCCACAGAGACTTTCCTTTCAGAGTCTCACCACA
1 TCCACCATGAAGGCGTTCCCTTACAAAGATAGCCACAAAGACTTTCCTTTCAGAGTCTCACCACA
*
23949519 AAGGTGTCCTTCTAACAGAGGGAGCCATAAAGGCATTCTTTTTATCAAAGATCGCCACTGATGGC
66 AAGGTGTCCTTCTAACAGAGGGAGCCATAAAGGCATTCTTTTTATCAAAGATCGCCACTGATGGA
23949584 CGTCGAAACCACCAAATATAAATTCCTACGACAAATATAACAGTAAATTGAAATATATAGCAGTA
131 CGTCGAAACCACCAAATATAAATTCCTACGACAAATATAACAGTAAATTGAAATATATAGCAGTA
*
23949649 GGGTCGAATCCATAGGGACTGGTTATCTAATTTCACATTTTCTTGTGACCAGATTCGCTGTCGCA
196 GGGTCGAATCCATAGGGACTGGTTATCTAATTTCACATTTTCTTATGACCAGATTCGCTGTCGCA
*
23949714 GTCACGGTCGTGCCCACGACCTTTGCGTAGTAATGCTAAAATAAATAAATAAAAATGGGAGATCT
261 GTCACAGTCGTGCCCACGACCTTTGCGTAGTAATGCTAAAATAAATAAATAAAAATGGGAGATCT
23949779 AAATTGATTAAGATAAAAAAATAAGGAAATATGAAGTGTAATAAAATAAAATAAAAACAGATTTA
326 AAATTGATTAAGATAAAAAAATAAGGAAATATGAAGTGTAATAAAATAAAATAAAAACAGATTTA
23949844 AAAATGCAAAAATAAATTTAAGAAAATGAAATAAATTG
391 AAAATGCAAAAATAAATTTAAGAAAATGAAATAAATTG
23949882 T
1 T
23949883 TAAATAAAAT
Statistics
Matches: 420, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
427 381 0.91
428 39 0.09
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (428 bp):
TCCACCATGAAGGCGTTCCCTTACAAAGATAGCCACAAAGACTTTCCTTTCAGAGTCTCACCACA
AAGGTGTCCTTCTAACAGAGGGAGCCATAAAGGCATTCTTTTTATCAAAGATCGCCACTGATGGA
CGTCGAAACCACCAAATATAAATTCCTACGACAAATATAACAGTAAATTGAAATATATAGCAGTA
GGGTCGAATCCATAGGGACTGGTTATCTAATTTCACATTTTCTTATGACCAGATTCGCTGTCGCA
GTCACAGTCGTGCCCACGACCTTTGCGTAGTAATGCTAAAATAAATAAATAAAAATGGGAGATCT
AAATTGATTAAGATAAAAAAATAAGGAAATATGAAGTGTAATAAAATAAAATAAAAACAGATTTA
AAAATGCAAAAATAAATTTAAGAAAATGAAATAAATTG
Found at i:23950747 original size:13 final size:13
Alignment explanation
Indices: 23950729--23950794 Score: 81
Period size: 13 Copynumber: 5.5 Consensus size: 13
23950719 TAGATTTTTT
23950729 CTAAATATTATCA
1 CTAAATATTATCA
23950742 CTAAATA--ATC-
1 CTAAATATTATCA
23950752 CTAAATATTATCA
1 CTAAATATTATCA
*
23950765 CTAAATA--AT-T
1 CTAAATATTATCA
23950775 CTAAATATTATCA
1 CTAAATATTATCA
23950788 CTAAATA
1 CTAAATA
23950795 ATTCAACATT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
10 14 0.31
11 5 0.11
12 5 0.11
13 21 0.47
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:23950757 original size:10 final size:11
Alignment explanation
Indices: 23950738--23950796 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 11
23950728 TCTAAATATT
23950738 ATCACTAAATA
1 ATCACTAAATA
23950749 ATC-CTAAATA
1 ATCACTAAATA
23950759 TTATCACTAAATA
1 --ATCACTAAATA
*
23950772 AT-TCTAAATA
1 ATCACTAAATA
23950782 TTATCACTAAATA
1 --ATCACTAAATA
23950795 AT
1 AT
23950797 TCAACATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
10 14 0.35
11 7 0.17
12 5 0.12
13 14 0.35
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (11 bp):
ATCACTAAATA
Found at i:23950797 original size:23 final size:23
Alignment explanation
Indices: 23950727--23950798 Score: 135
Period size: 23 Copynumber: 3.1 Consensus size: 23
23950717 GCTAGATTTT
23950727 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
23950750 TCCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
23950773 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
23950796 TTC
1 TTC
23950799 AACATTTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:23951305 original size:15 final size:16
Alignment explanation
Indices: 23951282--23951314 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23951272 AGGCTCTTAG
23951282 TAAACAAATA-AAAAA
1 TAAACAAATAGAAAAA
*
23951297 TAAATAAATAGAAAAA
1 TAAACAAATAGAAAAA
23951313 TA
1 TA
23951315 GGGTCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (16 bp):
TAAACAAATAGAAAAA
Found at i:23964680 original size:84 final size:85
Alignment explanation
Indices: 23964568--23964730 Score: 224
Period size: 84 Copynumber: 1.9 Consensus size: 85
23964558 TAAAGTCGGC
* * * *
23964568 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TTAGATCTTATCT-CTCTGAAGT
1 AATCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCGATA-ATCCTATCTCCT-TGAAGT
23964631 TGCAG-AGAGCAGATCGCATCT
64 TGCAGTAGAGCAGATCGCATCT
* *
23964652 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCGATAATCCTATCTCCTTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCGATAATCCTATCTCCTTGAAGTTG
*
23964717 CAGTGGAGCAGATC
66 CAGTAGAGCAGATC
23964731 AAAACCTTAG
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 56 0.81
85 13 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (85 bp):
AATCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCGATAATCCTATCTCCTTGAAGTTG
CAGTAGAGCAGATCGCATCT
Found at i:23964762 original size:128 final size:128
Alignment explanation
Indices: 23964529--23964852 Score: 531
Period size: 128 Copynumber: 2.5 Consensus size: 128
23964519 CTGACAGTCC
* * **
23964529 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGTCGGCAATCCTATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTG
* *
23964594 GAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCT
66 GAGCAGATCAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCT
* *
23964657 TATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCGATAATCCTATCTCCTTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTG
* *
23964722 GAGCAGATCAAAACCTTAGATCTTATCTCTCTGAATTTGCAGAGAGCAGATCGCATCTAGTCT
66 GAGCAGATCAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCT
* * *
23964785 TATCTCCCTAAAGTTGCAGTGGAGCTGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTG
23964850 GAG
66 GAG
23964853 TGGATTAAAG
Statistics
Matches: 181, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 181 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTG
GAGCAGATCAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCT
Found at i:23964862 original size:44 final size:44
Alignment explanation
Indices: 23964526--23964863 Score: 273
Period size: 44 Copynumber: 7.9 Consensus size: 44
23964516 TAGCTGACAG
* * **
23964526 TCCTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGTCGGCAA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
* * *
23964570 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TTAGA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA-A
* * * * ***
23964614 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCTAA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
* *
23964654 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCGATAA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
* * * *
23964698 TCCTATCTCCTTGAAGTTGCAGTGGAGCAGATCAAAACC-TTAGA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA-A
* * * * * *** *
23964742 TCTTATCTCTCTGAATTTGCAG-AGAGCAGA-T--CGCATCTAG
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
* * *
23964782 TCTTATCTCCCTAAAGTTGCAGTGGAGCTGATTAAAGCCGATAA
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
* **
23964826 TCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAGC
1 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
23964864 ACTAAATTCC
Statistics
Matches: 231, Mismatches: 51, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
40 42 0.18
41 17 0.07
42 3 0.01
43 16 0.07
44 153 0.66
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (44 bp):
TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
Found at i:23965077 original size:15 final size:16
Alignment explanation
Indices: 23965054--23965086 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23965044 AGGCTCTTAG
23965054 TAAACAAATA-AAAAA
1 TAAACAAATAGAAAAA
*
23965069 TAAATAAATAGAAAAA
1 TAAACAAATAGAAAAA
23965085 TA
1 TA
23965087 GGGTCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (16 bp):
TAAACAAATAGAAAAA
Found at i:23970638 original size:30 final size:31
Alignment explanation
Indices: 23970583--23970650 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
23970573 ACTCTTAAAA
** * **
23970583 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
23970614 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
23970644 TATTTAC
1 TATTTAC
23970651 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:23978230 original size:23 final size:23
Alignment explanation
Indices: 23978202--23978247 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
23978192 ATTTTAAAAA
*
23978202 TAAAAA-AACAAAAACAAGTATTT
1 TAAAAATAA-AAAAACAAATATTT
*
23978225 TAAAAATAAAAAAATAAATATTT
1 TAAAAATAAAAAAACAAATATTT
23978248 ATTATATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAAAATAAAAAAACAAATATTT
Found at i:23981752 original size:21 final size:21
Alignment explanation
Indices: 23981726--23981765 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23981716 TAACTTTGAT
23981726 AAATAATTATAAATTGTAAAA
1 AAATAATTATAAATTGTAAAA
* *
23981747 AAATAATTTTAATTTGTAA
1 AAATAATTATAAATTGTAA
23981766 TTTATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAATAATTATAAATTGTAAAA
Found at i:23984007 original size:8 final size:8
Alignment explanation
Indices: 23983959--23984016 Score: 59
Period size: 8 Copynumber: 7.4 Consensus size: 8
23983949 AAAAATTATA
23983959 AATTTAAT
1 AATTTAAT
*
23983967 AATGTTAAC
1 AAT-TTAAT
*
23983976 AATATAAT
1 AATTTAAT
23983984 AA-TTAACT
1 AATTTAA-T
23983992 AA-TT-AT
1 AATTTAAT
23983998 AATTTAAT
1 AATTTAAT
23984006 AATTTAAT
1 AATTTAAT
23984014 AAT
1 AAT
23984017 ATTTTCTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 3 0.07
7 6 0.14
8 26 0.62
9 7 0.17
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (8 bp):
AATTTAAT
Found at i:23984568 original size:21 final size:20
Alignment explanation
Indices: 23984522--23984574 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
23984512 AGCGGTGGCG
* * *
23984522 GTGAGATTAGTTACTGTAGC
1 GTGAGATTAGATACTATAAC
23984542 GATGAGATTAGATACTATAAC
1 G-TGAGATTAGATACTATAAC
23984563 TGTGAGATTAGA
1 -GTGAGATTAGA
23984575 AACAATGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (20 bp):
GTGAGATTAGATACTATAAC
Found at i:23990398 original size:269 final size:269
Alignment explanation
Indices: 23989919--23990458 Score: 1017
Period size: 269 Copynumber: 2.0 Consensus size: 269
23989909 AAAAAGTGGT
*
23989919 TACCATCAAATAAGAACGAAACAATATGATGAATGGAAAACTGCTTTTAAGACTAAGTATGGCCT
1 TACCATCAAATAAGAACGAAACAAGATGATGAATGGAAAACTGCTTTTAAGACTAAGTATGGCCT
* *
23989984 GTATGAGTGGTTAGTCATGCCATTTGGCTTAACTAATGCTCCTAGCACATTTATGAGATTAATGA
66 GTATGAGTGGTTAGTCATGCCATTTGGCTTAACTAATGCTCCTAGCACATTCATGAGATTAATAA
*
23990049 ACCACATACTTAGACATTTTTTAGGAAAATTTGTCGTTGTGTATTTTGATGACATACTGATTTAT
131 ACCACATACTTAGACATTTTTTAGGAAAATTTGTCGTTGTGTATTTTGATGACATACTAATTTAT
23990114 AGCAAAACTTTGAATGATCATGTTGGGCATGTTAAATTAGTATTGGATGTGTTAAGGCATGAACG
196 AGCAAAACTTTGAATGATCATGTTGGGCATGTTAAATTAGTATTGGATGTGTTAAGGCATGAACG
23990179 ACTCTTTGC
261 ACTCTTTGC
*
23990188 TACCATCAAATAAGAATGAAACAAGATGATGAATGGAAAACTGCTTTTAAGACTAAGTATGGCCT
1 TACCATCAAATAAGAACGAAACAAGATGATGAATGGAAAACTGCTTTTAAGACTAAGTATGGCCT
*
23990253 GTATGAGTGGTTAGTCATGTCATTTGGCTTAACTAATGCTCCTAGCACATTCATGAGATTAATAA
66 GTATGAGTGGTTAGTCATGCCATTTGGCTTAACTAATGCTCCTAGCACATTCATGAGATTAATAA
*
23990318 ACCACATACTTAGACCTTTTTTAGGAAAATTTGTCGTTGTGTATTTTGATGACATACTAATTTAT
131 ACCACATACTTAGACATTTTTTAGGAAAATTTGTCGTTGTGTATTTTGATGACATACTAATTTAT
23990383 AGCAAAACTTTGAATGATCATGTTGGGCATGTTAAATTAGTATTGGATGTGTTAAGGCATGAACG
196 AGCAAAACTTTGAATGATCATGTTGGGCATGTTAAATTAGTATTGGATGTGTTAAGGCATGAACG
23990448 ACTCTTTGC
261 ACTCTTTGC
23990457 TA
1 TA
23990459 ATCTTGTAAA
Statistics
Matches: 264, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
269 264 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (269 bp):
TACCATCAAATAAGAACGAAACAAGATGATGAATGGAAAACTGCTTTTAAGACTAAGTATGGCCT
GTATGAGTGGTTAGTCATGCCATTTGGCTTAACTAATGCTCCTAGCACATTCATGAGATTAATAA
ACCACATACTTAGACATTTTTTAGGAAAATTTGTCGTTGTGTATTTTGATGACATACTAATTTAT
AGCAAAACTTTGAATGATCATGTTGGGCATGTTAAATTAGTATTGGATGTGTTAAGGCATGAACG
ACTCTTTGC
Found at i:23993016 original size:27 final size:27
Alignment explanation
Indices: 23992978--23993036 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
23992968 GGTAATGGAA
*
23992978 TGGCGACACCGGTGGTGCCATTCTCAT
1 TGGCGACACCGGTGGTGCCATTCCCAT
23993005 TGGCGACACCGGTGGTGCCATTCCCAT
1 TGGCGACACCGGTGGTGCCATTCCCAT
23993032 TGGCG
1 TGGCG
23993037 GCACAGGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.14, C:0.31, G:0.32, T:0.24
Consensus pattern (27 bp):
TGGCGACACCGGTGGTGCCATTCCCAT
Found at i:23993463 original size:28 final size:28
Alignment explanation
Indices: 23993431--23993488 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
23993421 AAAAATTTAC
23993431 TAAATTTATCAAAGGCTTATAGCTATAA
1 TAAATTTATCAAAGGCTTATAGCTATAA
23993459 TAAATTTATCAAAGGCTTATAGCTATAA
1 TAAATTTATCAAAGGCTTATAGCTATAA
23993487 TA
1 TA
23993489 GTCCCTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (28 bp):
TAAATTTATCAAAGGCTTATAGCTATAA
Found at i:23994798 original size:27 final size:27
Alignment explanation
Indices: 23994755--23994817 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
23994745 TTTTAGTCCT
23994755 GTGCCGCCAATTGGAATGGCACCACCG
1 GTGCCGCCAATTGGAATGGCACCACCG
*
23994782 GTGCCGCCAA-TGAGAATGGCATCACCG
1 GTGCCGCCAATTG-GAATGGCACCACCG
23994809 GTGCCGCCA
1 GTGCCGCCA
23994818 TTCCATTACC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.14
Consensus pattern (27 bp):
GTGCCGCCAATTGGAATGGCACCACCG
Found at i:23994889 original size:11 final size:11
Alignment explanation
Indices: 23994870--23994914 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
23994860 GTAAATAATT
23994870 TTTTTATATTA
1 TTTTTATATTA
*
23994881 TTTTGATATT-
1 TTTTTATATTA
23994891 TTTTTAT-TT-
1 TTTTTATATTA
*
23994900 CTTTTATATTA
1 TTTTTATATTA
23994911 TTTT
1 TTTT
23994915 AGTAAAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 8 0.29
10 8 0.29
11 12 0.43
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTTATATTA
Found at i:23994908 original size:19 final size:21
Alignment explanation
Indices: 23994867--23994915 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
23994857 TTAGTAAATA
23994867 ATTTTTTTATATTATTTTGAT
1 ATTTTTTTATATTATTTTGAT
*
23994888 ATTTTTTTAT-TTCTTTT-AT
1 ATTTTTTTATATTATTTTGAT
*
23994907 ATTATTTTA
1 ATTTTTTTA
23994916 GTAAAAAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 10 0.38
20 6 0.23
21 10 0.38
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
ATTTTTTTATATTATTTTGAT
Found at i:23995102 original size:2 final size:2
Alignment explanation
Indices: 23995097--23995124 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23995087 CAAAAAAAAA
23995097 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23995125 GGAAAGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23995841 original size:42 final size:42
Alignment explanation
Indices: 23995782--23995866 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
23995772 TAGTCCTTTG
23995782 ACTCAATTACTTATTTTGTAGTCCTTCTATATGATAAAAACT
1 ACTCAATTACTTATTTTGTAGTCCTTCTATATGATAAAAACT
23995824 ACTCAATTACTTATTTTGTAGTCCTTCTATATGATAAAAACT
1 ACTCAATTACTTATTTTGTAGTCCTTCTATATGATAAAAACT
23995866 A
1 A
23995867 GGCCGCATTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.42
Consensus pattern (42 bp):
ACTCAATTACTTATTTTGTAGTCCTTCTATATGATAAAAACT
Found at i:24001931 original size:16 final size:16
Alignment explanation
Indices: 24001891--24001942 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
24001881 AAAAATCATG
* *
24001891 TTTTCCAT-CTTCTAG
1 TTTTCCATCCTTCCAA
*
24001906 TTTTCTATCCCTT-CAA
1 TTTTCCAT-CCTTCCAA
24001922 TTTTCCATCCTTCCAA
1 TTTTCCATCCTTCCAA
24001938 TTTTC
1 TTTTC
24001943 TTTTCACTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 11 0.37
16 16 0.53
17 3 0.10
ACGTcount: A:0.15, C:0.31, G:0.02, T:0.52
Consensus pattern (16 bp):
TTTTCCATCCTTCCAA
Found at i:24004225 original size:7 final size:7
Alignment explanation
Indices: 24004213--24004238 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24004203 TATATAATTT
24004213 TTTTTTA
1 TTTTTTA
24004220 TTTTTTA
1 TTTTTTA
24004227 TTTTTTA
1 TTTTTTA
24004234 TTTTT
1 TTTTT
24004239 ATATAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:24013288 original size:18 final size:19
Alignment explanation
Indices: 24013255--24013290 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24013245 ATGTTTTAGT
24013255 TATTTATTTAAGTAAAATA
1 TATTTATTTAAGTAAAATA
*
24013274 TATTTA-TTAATTAAAAT
1 TATTTATTTAAGTAAAAT
24013291 TGGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTATTTAAGTAAAATA
Found at i:24016268 original size:47 final size:47
Alignment explanation
Indices: 24016197--24016295 Score: 144
Period size: 47 Copynumber: 2.1 Consensus size: 47
24016187 AAAGTGGAAG
* * * *
24016197 TTATTGGCAGTTTATCTATAATTTTGATGGCTTGTCCACGATTTTGA
1 TTATTAGCAGTTCATCTACAATTTTGATGGCTTGTCCACAATTTTGA
* *
24016244 TTATTAGCAGTTCATCTACGATTTTGGTGGCTTGTCCACAATTTTGA
1 TTATTAGCAGTTCATCTACAATTTTGATGGCTTGTCCACAATTTTGA
24016291 TTATT
1 TTATT
24016296 GATAGTTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.46
Consensus pattern (47 bp):
TTATTAGCAGTTCATCTACAATTTTGATGGCTTGTCCACAATTTTGA
Found at i:24021139 original size:57 final size:57
Alignment explanation
Indices: 24021067--24021180 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
24021057 AGGTATCATT
* * *
24021067 TTTAAAATACGAATATCGATACCTCTGCTCCAGACCACAAAAATTCAACAGTTTAAG
1 TTTAAAATAAGAATATCGATACCTCTACTCCAGACCACAAAAATTCAACAATTTAAG
* *
24021124 TTTAAAATAATAATATCGATACCTCTACTCCAGACCACAAAAATTCGACAATTTAAG
1 TTTAAAATAAGAATATCGATACCTCTACTCCAGACCACAAAAATTCAACAATTTAAG
24021181 GCATATAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (57 bp):
TTTAAAATAAGAATATCGATACCTCTACTCCAGACCACAAAAATTCAACAATTTAAG
Found at i:24045656 original size:12 final size:12
Alignment explanation
Indices: 24045615--24045663 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
24045605 AAAATGTTCG
24045615 ATAAAAAT-TAT
1 ATAAAAATATAT
* * *
24045626 ATATAAATTACAA
1 ATA-AAAATATAT
24045639 ATAAAAATATAT
1 ATAAAAATATAT
24045651 ATAAAAATATAT
1 ATAAAAATATAT
24045663 A
1 A
24045664 CAAATTTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
11 3 0.10
12 23 0.77
13 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAAAAATATAT
Found at i:24045762 original size:23 final size:23
Alignment explanation
Indices: 24045736--24045786 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
24045726 ATATAGAAAC
24045736 AATATTATAAAATAATACATAAG
1 AATATTATAAAATAATACATAAG
24045759 AATATTATAAAATAATACATAAG
1 AATATTATAAAATAATACATAAG
24045782 AATAT
1 AATAT
24045787 ACATAGAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
AATATTATAAAATAATACATAAG
Found at i:24045788 original size:12 final size:11
Alignment explanation
Indices: 24045742--24045841 Score: 80
Period size: 12 Copynumber: 8.7 Consensus size: 11
24045732 AAACAATATT
24045742 ATAAAATAATAC
1 ATAAAAT-ATAC
*
24045754 ATAAGAATAT-T
1 ATAA-AATATAC
24045765 ATAAAATAATAC
1 ATAAAAT-ATAC
24045777 ATAAGAATATAC
1 ATAA-AATATAC
** *
24045789 ATAGAGTTATGC
1 ATA-AAATATAC
24045801 ATAAATATATAC
1 ATAAA-ATATAC
24045813 A-AAAA-ATAC
1 ATAAAATATAC
24045822 ATAAAGATATAC
1 ATAAA-ATATAC
24045834 ATAAAATA
1 ATAAAATA
24045842 ATATTAACCC
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
9 5 0.07
10 7 0.10
11 14 0.20
12 38 0.54
13 7 0.10
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (11 bp):
ATAAAATATAC
Found at i:24045826 original size:21 final size:21
Alignment explanation
Indices: 24045800--24045841 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
24045790 TAGAGTTATG
*
24045800 CATAAATATATACAAAAAATA
1 CATAAAGATATACAAAAAATA
*
24045821 CATAAAGATATACATAAAATA
1 CATAAAGATATACAAAAAATA
24045842 ATATTAACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (21 bp):
CATAAAGATATACAAAAAATA
Found at i:24045839 original size:23 final size:23
Alignment explanation
Indices: 24045742--24045844 Score: 95
Period size: 23 Copynumber: 4.5 Consensus size: 23
24045732 AAACAATATT
*
24045742 ATAAAATAATACATAAGA-ATATT
1 ATAAAATAATACATAAGATATA-C
24045765 ATAAAATAATACATAAGAATATAC
1 ATAAAATAATACATAAG-ATATAC
* * * * *
24045789 ATAGAGTTATGCATAA-ATATAT
1 ATAAAATAATACATAAGATATAC
*
24045811 ACAAAA-AATACATAAAGATATAC
1 ATAAAATAATACAT-AAGATATAC
24045834 ATAAAATAATA
1 ATAAAATAATA
24045845 TTAACCCCAA
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
21 5 0.08
22 10 0.16
23 27 0.44
24 17 0.27
25 3 0.05
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (23 bp):
ATAAAATAATACATAAGATATAC
Found at i:24046592 original size:4 final size:4
Alignment explanation
Indices: 24046576--24046609 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
24046566 TAATAGTAAT
* *
24046576 AATA AATA GATA AATA AATA AATT AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
24046610 ATATAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:24048322 original size:27 final size:26
Alignment explanation
Indices: 24048292--24048369 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 26
24048282 AACACGTTAG
*
24048292 GAAAGAAATGCCTTTGTGGAGAAATAT
1 GAAAGAAAAGCCTTTGTGG-GAAATAT
24048319 GAAAGAAAAGCCTTTGTGGCGAAATAT
1 GAAAGAAAAGCCTTTGTGG-GAAATAT
* * *
24048346 AAAAGAAAAGCCATTGTGGCAAAT
1 GAAAGAAAAGCCTTTGTGGGAAAT
24048370 TTCGTATGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.09
27 42 0.91
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (26 bp):
GAAAGAAAAGCCTTTGTGGGAAATAT
Found at i:24052209 original size:3 final size:3
Alignment explanation
Indices: 24052201--24052245 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
24052191 CCATTCTAAG
24052201 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
24052246 AATCAACACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:24057175 original size:18 final size:20
Alignment explanation
Indices: 24057144--24057190 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
24057134 TAGAACTTCA
* *
24057144 AAAAGAATATATATAAATTG
1 AAAATAATATATATAAAATG
24057164 AAAATAATATATATAAAATG
1 AAAATAATATATATAAAATG
24057184 AAAATAA
1 AAAATAA
24057191 AAATAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (20 bp):
AAAATAATATATATAAAATG
Found at i:24057540 original size:23 final size:26
Alignment explanation
Indices: 24057500--24057553 Score: 78
Period size: 23 Copynumber: 2.2 Consensus size: 26
24057490 ACTAATTTTT
*
24057500 TTTTATTTTTTGTATATATTTTTA-A
1 TTTTATTTGTTGTATATATTTTTATA
24057525 TTTTATTTGTT-T-TATATTTTTATA
1 TTTTATTTGTTGTATATATTTTTATA
24057549 TTTTA
1 TTTTA
24057554 AAAATTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 10 0.37
24 7 0.26
25 10 0.37
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTTATTTGTTGTATATATTTTTATA
Found at i:24065420 original size:21 final size:21
Alignment explanation
Indices: 24065396--24065543 Score: 118
Period size: 21 Copynumber: 7.1 Consensus size: 21
24065386 AGAAGAAACC
* *
24065396 CATAAGGGTTGAACAGAAGCT
1 CATAAGAGTTAAACAGAAGCT
* * * *
24065417 CATAAGAGCTAAACGGAAACC
1 CATAAGAGTTAAACAGAAGCT
* * *
24065438 CGTAAGGGTTAAATAGAAGCT
1 CATAAGAGTTAAACAGAAGCT
* * *
24065459 CAAAAGAGTTAAACAGAAACC
1 CATAAGAGTTAAACAGAAGCT
* *
24065480 CATAAGTGTTAAA-AAAAGCT
1 CATAAGAGTTAAACAGAAGCT
* * * *
24065500 CAAAAGAGCTAAACGGAAACT
1 CATAAGAGTTAAACAGAAGCT
*
24065521 CATATGAGTTAAACAGAAGCT
1 CATAAGAGTTAAACAGAAGCT
24065542 CA
1 CA
24065544 AGAGAGCTAA
Statistics
Matches: 91, Mismatches: 35, Indels: 2
0.71 0.27 0.02
Matches are distributed among these distances:
20 14 0.15
21 77 0.85
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (21 bp):
CATAAGAGTTAAACAGAAGCT
Found at i:24065436 original size:42 final size:42
Alignment explanation
Indices: 24065390--24065560 Score: 227
Period size: 42 Copynumber: 4.1 Consensus size: 42
24065380 AAGCTAAGAA
* *
24065390 GAAACCCATAAGGGTTGAACAGAAGCTCATAAGAGCTAAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
* * * *
24065432 GAAACCCGTAAGGGTTAAATAGAAGCTCAAAAGAGTTAAACA
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
* *
24065474 GAAACCCATAAGTGTTAAA-AAAAGCTCAAAAGAGCTAAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
* * * *
24065515 GAAACTCATATGAGTTAAACAGAAGCTCAAGAGAGCTAAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
24065557 GAAA
1 GAAA
24065561 GTAAACGCGA
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 35 0.31
42 77 0.69
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.15
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
Found at i:24065514 original size:83 final size:84
Alignment explanation
Indices: 24065381--24065560 Score: 229
Period size: 83 Copynumber: 2.2 Consensus size: 84
24065371 AGCTCGTGAA
* * * * *
24065381 AGCTAAGA-AGAAACCCATAAGGGTTGAACAGAAGCTCATAAGAGCTAAACGGAAACCCGTAAGG
1 AGCTAA-ACAGAAACCCATAAGGGTTGAAAAAAAGCTCAAAAGAGCTAAACGGAAACCCATAAGA
*
24065445 GTTAAATAGAAGCTCAAAAG
65 GTTAAACAGAAGCTCAAAAG
* * * *
24065465 AGTTAAACAGAAACCCATAAGTGTT-AAAAAAAGCTCAAAAGAGCTAAACGGAAACTCATATGAG
1 AGCTAAACAGAAACCCATAAGGGTTGAAAAAAAGCTCAAAAGAGCTAAACGGAAACCCATAAGAG
*
24065529 TTAAACAGAAGCTCAAGAG
66 TTAAACAGAAGCTCAAAAG
*
24065548 AGCTAAACGGAAA
1 AGCTAAACAGAAA
24065561 GTAAACGCGA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
83 61 0.74
84 21 0.26
ACGTcount: A:0.48, C:0.16, G:0.21, T:0.15
Consensus pattern (84 bp):
AGCTAAACAGAAACCCATAAGGGTTGAAAAAAAGCTCAAAAGAGCTAAACGGAAACCCATAAGAG
TTAAACAGAAGCTCAAAAG
Found at i:24080698 original size:42 final size:41
Alignment explanation
Indices: 24080651--24080842 Score: 206
Period size: 42 Copynumber: 4.6 Consensus size: 41
24080641 AGCTGAAAAA
* * * *
24080651 AAGCTCATGAGAGCTAAGCAGAAACCTATAAGGGTTGAATAG
1 AAGCTCA-AAGAGCTAAACAGAAACCTATAAGGGTTAAACAG
**
24080693 AAGCTCATAAGAGCTAAATGGAAACCTATAAGGGTTAAACAG
1 AAGCTCA-AAGAGCTAAACAGAAACCTATAAGGGTTAAACAG
* ** *
24080735 AAGCTCGAAAGAGTTAAATGGAAACCCATAAGGGTTAAACAG
1 AAGCTC-AAAGAGCTAAACAGAAACCTATAAGGGTTAAACAG
* *
24080777 AAGCTCAAAAGAGCTAAACAGAAA-CTCATATGAGTTAAACAG
1 AAGCTC-AAAGAGCTAAACAGAAACCT-ATAAGGGTTAAACAG
*
24080819 AAGCTCGAGAGAGCTAAACAGAAA
1 AAGCTC-AAAGAGCTAAACAGAAA
24080843 GTAAAAACGA
Statistics
Matches: 131, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 129 0.98
43 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (41 bp):
AAGCTCAAAGAGCTAAACAGAAACCTATAAGGGTTAAACAG
Found at i:24080702 original size:21 final size:21
Alignment explanation
Indices: 24080678--24080824 Score: 91
Period size: 21 Copynumber: 7.0 Consensus size: 21
24080668 GCAGAAACCT
*
24080678 ATAAGGGTTGAATAGAAGCTC
1 ATAAGGGTTAAATAGAAGCTC
* * * *
24080699 ATAAGAGCTAAATGGAAAC-C
1 ATAAGGGTTAAATAGAAGCTC
*
24080719 TATAAGGGTTAAACAGAAGCTC
1 -ATAAGGGTTAAATAGAAGCTC
* * * *
24080741 GA-AAGAGTTAAATGGAAACCC
1 -ATAAGGGTTAAATAGAAGCTC
*
24080762 ATAAGGGTTAAACAGAAGCTC
1 ATAAGGGTTAAATAGAAGCTC
* * * * *
24080783 AAAAGAGCTAAACAGAAACTC
1 ATAAGGGTTAAATAGAAGCTC
* * *
24080804 ATATGAGTTAAACAGAAGCTC
1 ATAAGGGTTAAATAGAAGCTC
24080825 GAGAGAGCTA
Statistics
Matches: 94, Mismatches: 29, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
20 2 0.02
21 90 0.96
22 2 0.02
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (21 bp):
ATAAGGGTTAAATAGAAGCTC
Found at i:24080836 original size:21 final size:20
Alignment explanation
Indices: 24080728--24080841 Score: 84
Period size: 21 Copynumber: 5.5 Consensus size: 20
24080718 CTATAAGGGT
*
24080728 TAAACAGAAGCTCGAAAGAGT
1 TAAACAGAAGCTC-AAAGAGC
** * * * *
24080749 TAAATGGAAACCCATAAGGGT
1 TAAACAGAAGCTCA-AAGAGC
24080770 TAAACAGAAGCTCAAAAGAGC
1 TAAACAGAAGCTC-AAAGAGC
* * *
24080791 TAAACAGAAACTCATATGAGT
1 TAAACAGAAGCTCA-AAGAGC
*
24080812 TAAACAGAAGCTCGAGAGAGC
1 TAAACAGAAGCTC-AAAGAGC
24080833 TAAACAGAA
1 TAAACAGAA
24080842 AGTAAAAACG
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
20 2 0.03
21 67 0.94
22 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.21, T:0.15
Consensus pattern (20 bp):
TAAACAGAAGCTCAAAGAGC
Found at i:24087615 original size:48 final size:49
Alignment explanation
Indices: 24087553--24087680 Score: 125
Period size: 48 Copynumber: 2.6 Consensus size: 49
24087543 CAATTATCAA
* **
24087553 GAAGCTTATACGAGCTATAAACGGGAAGCTCAAGAGAGCCA-AATTTAG
1 GAAGCTCATACGAGCTATAAACGGGAAGCTCAAGAGAGCCATAATACAG
* * * * *
24087601 GAAGCTCATGCGAGCCTAT-ATCGAGAAGCTTAATAGAGCCATAATACAG
1 GAAGCTCATACGAG-CTATAAACGGGAAGCTCAAGAGAGCCATAATACAG
* * *
24087650 GATGCTCATAAGAGCTAAATAACGGGAAGCT
1 GAAGCTCATACGAGCTATA-AACGGGAAGCT
24087681 TGTGAGAGCC
Statistics
Matches: 62, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
48 33 0.53
49 20 0.32
50 9 0.15
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (49 bp):
GAAGCTCATACGAGCTATAAACGGGAAGCTCAAGAGAGCCATAATACAG
Found at i:24090088 original size:15 final size:15
Alignment explanation
Indices: 24090064--24090131 Score: 52
Period size: 15 Copynumber: 4.4 Consensus size: 15
24090054 AGTCACCCAT
24090064 TTTATT-TTATTTTA
1 TTTATTATTATTTTA
24090078 TTTATTATTATTTGT-
1 TTTATTATTATTT-TA
*
24090093 TATATTATTTATTTTTA
1 TTTATTA-TTA-TTTTA
*
24090110 TTTTACTATT-TTTTA
1 -TTTATTATTATTTTA
24090125 TATTATT
1 T-TTATT
24090132 TATTTATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
14 7 0.16
15 21 0.49
16 5 0.12
17 5 0.12
18 5 0.12
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (15 bp):
TTTATTATTATTTTA
Found at i:24090100 original size:22 final size:21
Alignment explanation
Indices: 24090068--24090132 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 21
24090058 ACCCATTTTA
*
24090068 TTTTATTTTATTTATTATTAT
1 TTTTATATTATTTATTATTAT
*
24090089 TTGTTATATTATTTATTTTTA-
1 TT-TTATATTATTTATTATTAT
*
24090110 TTTTACTATTTTTTA-TATTAT
1 TTTTA-TATTATTTATTATTAT
24090131 TT
1 TT
24090133 ATTTATCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
20 7 0.19
21 14 0.38
22 16 0.43
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTATATTATTTATTATTAT
Found at i:24090126 original size:30 final size:32
Alignment explanation
Indices: 24090069--24090136 Score: 97
Period size: 30 Copynumber: 2.2 Consensus size: 32
24090059 CCCATTTTAT
*
24090069 TTTA-TTTTATTTATTATTATTTGTTATATTA
1 TTTATTTTTATTTATTACTATTTGTTATATTA
*
24090100 TTTATTTTTA-TT-TTACTATTTTTTATATTA
1 TTTATTTTTATTTATTACTATTTGTTATATTA
24090130 TTTATTT
1 TTTATTT
24090137 ATCATTCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
30 23 0.68
31 6 0.18
32 5 0.15
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (32 bp):
TTTATTTTTATTTATTACTATTTGTTATATTA
Found at i:24090293 original size:13 final size:13
Alignment explanation
Indices: 24090260--24090298 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
24090250 AAGTTTATTA
24090260 TTATTATTATTATTT
1 TTATT-TTATT-TTT
*
24090275 TCATTTTATTTTT
1 TTATTTTATTTTT
24090288 TTATTTTATTT
1 TTATTTTATTT
24090299 ATCTTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 13 0.59
14 5 0.23
15 4 0.18
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:24090300 original size:28 final size:29
Alignment explanation
Indices: 24090260--24090316 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
24090250 AAGTTTATTA
*
24090260 TTATTATTATTAT-TTTCATTTTATTTTT
1 TTATTATTATTATCTTTCATTTTAATTTT
*
24090288 TTATT-TTATTTATCTTTCTTTTTAATTTT
1 TTATTATTA-TTATCTTTCATTTTAATTTT
24090317 GTTTTAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.12
28 9 0.36
29 13 0.52
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.75
Consensus pattern (29 bp):
TTATTATTATTATCTTTCATTTTAATTTT
Found at i:24091349 original size:14 final size:14
Alignment explanation
Indices: 24091305--24091352 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
24091295 TTATTGAAAA
24091305 AAAAAGATAT-AAAG
1 AAAAA-ATATCAAAG
*
24091319 AAAAAAGA-C-AA-
1 AAAAAATATCAAAG
24091330 AAAAAATATCAAAG
1 AAAAAATATCAAAG
24091344 AAAAAATAT
1 AAAAAATAT
24091353 TGATTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 7 0.25
12 3 0.11
13 4 0.14
14 14 0.50
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.12
Consensus pattern (14 bp):
AAAAAATATCAAAG
Found at i:24094847 original size:22 final size:22
Alignment explanation
Indices: 24094822--24094871 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
24094812 CCGATAGCTG
*
24094822 GTAAAAGGTATTGATACTTTTT
1 GTAAAAGGTATCGATACTTTTT
*
24094844 GT-AAAGGTATCGATATTTTTT
1 GTAAAAGGTATCGATACTTTTT
24094865 GTGAAAA
1 GT-AAAA
24094872 ATGAAAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 19 0.79
22 2 0.08
23 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.42
Consensus pattern (22 bp):
GTAAAAGGTATCGATACTTTTT
Found at i:24100966 original size:21 final size:20
Alignment explanation
Indices: 24100921--24100966 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
24100911 TTTTTGGAAT
24100921 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
24100940 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
24100961 GGTTGA
1 GGTTGA
24100967 TTGCATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:24106529 original size:21 final size:21
Alignment explanation
Indices: 24106505--24106547 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
24106495 CCACTACTCG
24106505 ACTAACTATCAAATCCCACCA
1 ACTAACTATCAAATCCCACCA
24106526 ACTAACTATCAAATCCCACCA
1 ACTAACTATCAAATCCCACCA
24106547 A
1 A
24106548 AACTGACCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (21 bp):
ACTAACTATCAAATCCCACCA
Found at i:24112284 original size:36 final size:36
Alignment explanation
Indices: 24112237--24112316 Score: 133
Period size: 36 Copynumber: 2.2 Consensus size: 36
24112227 ATTCCAACCA
* * *
24112237 AAACACACCAGATGCTCATAAGATCTAATCCATTCG
1 AAACACACCAGATGCCCATAAGAGCTAATCCATCCG
24112273 AAACACACCAGATGCCCATAAGAGCTAATCCATCCG
1 AAACACACCAGATGCCCATAAGAGCTAATCCATCCG
24112309 AAACACAC
1 AAACACAC
24112317 TAATGGCTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.41, C:0.31, G:0.11, T:0.16
Consensus pattern (36 bp):
AAACACACCAGATGCCCATAAGAGCTAATCCATCCG
Found at i:24117835 original size:15 final size:13
Alignment explanation
Indices: 24117804--24117838 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
24117794 TTTATACTTA
24117804 AATTAACTTAACT
1 AATTAACTTAACT
24117817 AATTAACATTAACCT
1 AATTAAC-TTAA-CT
24117832 AATTAAC
1 AATTAAC
24117839 CTTTAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 4 0.20
15 9 0.45
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTAACTTAACT
Done.