Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 83 of 207
Found at i:24119078 original size:12 final size:10
Alignment explanation
Indices: 24119053--24119092 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
24119043 AAACATGATG
24119053 AATTTTAATT
1 AATTTTAATT
24119063 AATTTTATAGTT
1 AATTTTA-A-TT
*
24119075 AATTTTGATT
1 AATTTTAATT
24119085 AATTTTAA
1 AATTTTAA
24119093 CTATTTTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 16 0.62
11 2 0.08
12 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (10 bp):
AATTTTAATT
Found at i:24123312 original size:18 final size:18
Alignment explanation
Indices: 24123289--24123323 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24123279 CTTGGACATC
24123289 ATTAAA-ACATGTAATAAA
1 ATTAAACACAT-TAATAAA
24123307 ATTAAACACATTAATAA
1 ATTAAACACATTAATAA
24123324 GATGCATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
ATTAAACACATTAATAAA
Found at i:24127407 original size:18 final size:18
Alignment explanation
Indices: 24127384--24127420 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24127374 GCAAACAAGA
24127384 CACCGTTAGGGATGTCAC
1 CACCGTTAGGGATGTCAC
24127402 CACCGTTAGGGATGTCAC
1 CACCGTTAGGGATGTCAC
24127420 C
1 C
24127421 CTATAGGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (18 bp):
CACCGTTAGGGATGTCAC
Found at i:24128287 original size:15 final size:16
Alignment explanation
Indices: 24128269--24128301 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24128259 TGATAAACTT
24128269 TAATATATAA-TTATA
1 TAATATATAATTTATA
*
24128284 TAATTTATAATTTATA
1 TAATATATAATTTATA
24128300 TA
1 TA
24128302 TTAATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATATAATTTATA
Found at i:24128297 original size:27 final size:28
Alignment explanation
Indices: 24128239--24128307 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 28
24128229 GAATAAATAT
24128239 ATTTAATAT-T-ATTAATAATTTGATAA
1 ATTTAATATATAATTAATAATTTGATAA
24128265 ACTTTAATATATAATTATATAATTT-AT-A
1 A-TTTAATATATAATTA-ATAATTTGATAA
24128293 ATTT-ATATATTAATT
1 ATTTAATATA-TAATT
24128308 TTTACCAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
26 6 0.16
27 16 0.42
28 3 0.08
29 6 0.16
30 7 0.18
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (28 bp):
ATTTAATATATAATTAATAATTTGATAA
Found at i:24129875 original size:12 final size:11
Alignment explanation
Indices: 24129850--24129887 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
24129840 GAACATGATG
24129850 AATTTTA-ATT
1 AATTTTATATT
24129860 AATTTTATAGTT
1 AATTTTATA-TT
24129872 AATTTT-TATT
1 AATTTTATATT
24129882 AATTTT
1 AATTTT
24129888 GACTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
AATTTTATATT
Found at i:24133186 original size:46 final size:46
Alignment explanation
Indices: 24133136--24133267 Score: 151
Period size: 46 Copynumber: 2.9 Consensus size: 46
24133126 CACATGCATA
* *
24133136 ATAGAATATGCCACAAAAGCTACACGAAATGTGCCACAAAGGCTTT
1 ATAGAATATGCCACAAAAGCAACACGAAATATGCCACAAAGGCTTT
* * *
24133182 ATAGAATATGGCACATAGGCAACACGAAATATGCCACAAAGGCTTT
1 ATAGAATATGCCACAAAAGCAACACGAAATATGCCACAAAGGCTTT
* * * *
24133228 ACATAATATGTCAC-ACAGACAACAC-AGAATATGCCACAAA
1 ATAGAATATGCCACAAAAG-CAACACGA-AATATGCCACAAA
24133268 ATTTTTACAG
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 2 0.03
46 71 0.97
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (46 bp):
ATAGAATATGCCACAAAAGCAACACGAAATATGCCACAAAGGCTTT
Found at i:24133237 original size:23 final size:23
Alignment explanation
Indices: 24133140--24133225 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
24133130 TGCATAATAG
*
24133140 AATATGCCACAAAAGCTACACGA
1 AATATGCCACAAAGGCTACACGA
* *
24133163 AATGTGCCACAAAGGCTTTATA-G-
1 AATATGCCACAAAGGC--TACACGA
* * *
24133186 AATATGGCACATAGGCAACACGA
1 AATATGCCACAAAGGCTACACGA
24133209 AATATGCCACAAAGGCT
1 AATATGCCACAAAGGCT
24133226 TTACATAATA
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 2 0.04
22 1 0.02
23 41 0.85
24 1 0.02
25 3 0.06
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (23 bp):
AATATGCCACAAAGGCTACACGA
Found at i:24142933 original size:17 final size:18
Alignment explanation
Indices: 24142911--24142951 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
24142901 AAACGAAAGA
24142911 AATTTTGTTTA-AAAT-C
1 AATTTTGTTTACAAATAC
24142927 TAATTTT-TTTACAAATAC
1 -AATTTTGTTTACAAATAC
24142945 AATTTTG
1 AATTTTG
24142952 AACCCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.19
17 16 0.76
18 1 0.05
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (18 bp):
AATTTTGTTTACAAATAC
Found at i:24143345 original size:12 final size:12
Alignment explanation
Indices: 24143328--24143353 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24143318 CCCAAATTTC
24143328 AAAAATCTCAAA
1 AAAAATCTCAAA
24143340 AAAAATCTCAAA
1 AAAAATCTCAAA
24143352 AA
1 AA
24143354 TTGAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATCTCAAA
Found at i:24148416 original size:16 final size:17
Alignment explanation
Indices: 24148395--24148426 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24148385 AATTTTTAGA
24148395 AAATTTTCCT-AATTTC
1 AAATTTTCCTCAATTTC
24148411 AAATTTTCCTCAATTT
1 AAATTTTCCTCAATTT
24148427 AGTCCCTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTTTCCTCAATTTC
Found at i:24148816 original size:22 final size:21
Alignment explanation
Indices: 24148780--24148825 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
24148770 ATATAGAGTT
*
24148780 AATAATAATAAATATCTAACA
1 AATAATAATAAATATATAACA
* *
24148801 AATAACTAATACATATATTACA
1 AATAA-TAATAAATATATAACA
24148823 AAT
1 AAT
24148826 GTATACAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (21 bp):
AATAATAATAAATATATAACA
Found at i:24148994 original size:36 final size:36
Alignment explanation
Indices: 24148928--24148996 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
24148918 ATTATTTATC
**
24148928 AAATAAATATCTTTTACATAATGATAATAAATAAAT
1 AAATAAATATCTTTTACATAACAATAATAAATAAAT
24148964 AAATAAATATCTATTTA-ATAAACAAT-ATAAATA
1 AAATAAATATCT-TTTACAT-AACAATAATAAATA
24148997 TTACACTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 21 0.72
37 8 0.28
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (36 bp):
AAATAAATATCTTTTACATAACAATAATAAATAAAT
Found at i:24149104 original size:21 final size:19
Alignment explanation
Indices: 24149073--24149125 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
24149063 AATTTATTTC
24149073 ATAAT-ATAATAACAACAATA
1 ATAATAATAATAA-AA-AATA
*
24149093 TTAATAATAATAAAAAATA
1 ATAATAATAATAAAAAATA
24149112 ATAA-AATAATAAAA
1 ATAATAATAATAAAA
24149126 TGTCATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 10 0.33
19 7 0.23
20 6 0.20
21 7 0.23
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAATAATAATAAAAAATA
Found at i:24149119 original size:8 final size:8
Alignment explanation
Indices: 24149094--24149126 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
24149084 ACAACAATAT
24149094 TAATAATAA
1 TAATAA-AA
24149103 TAA-AAAA
1 TAATAAAA
24149110 TAATAAAA
1 TAATAAAA
24149118 TAATAAAA
1 TAATAAAA
24149126 T
1 T
24149127 GTCATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 5 0.22
8 15 0.65
9 3 0.13
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
TAATAAAA
Found at i:24153061 original size:21 final size:21
Alignment explanation
Indices: 24153016--24153062 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
24153006 GAATTGAGAG
* **
24153016 TTCTACTGATACAACTCTAGG
1 TTCTACTGATACAACTCGAAC
24153037 TTCTACTGATACAACTCGAAC
1 TTCTACTGATACAACTCGAAC
24153058 TTCTA
1 TTCTA
24153063 TCAATAGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.34
Consensus pattern (21 bp):
TTCTACTGATACAACTCGAAC
Found at i:24157045 original size:18 final size:18
Alignment explanation
Indices: 24157022--24157056 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24157012 CTTGGACATC
24157022 ATTAAA-ACATGTAATAAA
1 ATTAAACACAT-TAATAAA
24157040 ATTAAACACATTAATAA
1 ATTAAACACATTAATAA
24157057 GATGCTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
ATTAAACACATTAATAAA
Found at i:24174904 original size:20 final size:18
Alignment explanation
Indices: 24174879--24174918 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 18
24174869 ATGAAATGAA
24174879 ATATTTAATATAAATAATAT
1 ATATTT-ATAT-AATAATAT
24174899 ATATTTATATAATAATAT
1 ATATTTATATAATAATAT
24174917 AT
1 AT
24174919 GTAAAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.50
19 4 0.20
20 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTATATAATAATAT
Found at i:24177112 original size:128 final size:128
Alignment explanation
Indices: 24176809--24177780 Score: 1245
Period size: 128 Copynumber: 7.6 Consensus size: 128
24176799 ACTGCAACTT
* * * * *
24176809 CAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGTCGTATTT
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
* * * * * * * * ** *
24176874 GATCTG-TCC-C-ACTGCAACTTCAGGGGGATAATA-C-CTACTTACTTAGCCTGCTCCACTGCA
66 GATCTGCTCCGCTACTG---CTT-AGGGAGACAAGATCTGTAATTTC-CAACCTATTCCACTGCT
*
24176934 ACC
126 GCC
* * * * * * *
24176937 TCAGAGAGAAAGGACTTGTGGCTTAAATTTGCTTCCTTACACATGAAGATAAGATTCGCCATCTT
1 -CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTT
* * * * *
24177002 CGATCTGCTCCGCTACTACTTAGGGAGACAAGATCTGTAATTTCCAACTTATTCTACTACAGCC
65 CGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
*
24177066 CAGGGATATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
* *
24177131 GATCTGCTCCTCTATTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
* ** * * * *
24177194 AAGGGATATAGGACTTACGGCTTAAATCTGCTTCCTTACACTTGACGATCAGATTCGCTGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
* * *
24177259 GATCTGCTTCGCTACTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTACC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
* ** * *
24177322 CAGGGATATAGGACTTGCGGCTTAAATCTTATTCCTTTCACTTGAAGATAAGATTTGTCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
* *
24177387 GATCTGCT-CGCTATTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTGCC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
* * * *
24177449 TAGGGATATAGGACTTGTGGCTTAAATCTACTTCCTTACACATGAAGATAAGATTTGTCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
* *
24177514 GATCTGCTCCGCTACTGCTTAGGGAGAAAAGATCTGTAATTTCCAACCTATTCCACTACTGCC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
* *
24177577 CAGGGATATAGGACTTGCGGCTTAAATCTGCTTCCTTACACTTGAAGATAACATTTGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
*
24177642 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
* * * * * *
24177705 CAGGGATATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGTCGTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTTGCCGTC
24177770 TTCGATCTGCT
63 TTCGATCTGCT
24177781 TTGCCGTCAG
Statistics
Matches: 745, Mismatches: 89, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
127 119 0.16
128 506 0.68
129 81 0.11
130 8 0.01
131 28 0.04
132 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (128 bp):
CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTC
GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCC
Found at i:24177485 original size:383 final size:383
Alignment explanation
Indices: 24176947--24177780 Score: 1260
Period size: 383 Copynumber: 2.2 Consensus size: 383
24176937 TCAGAGAGAA
* * * *
24176947 AGGACTTGTGGCTTAAAT-TTGCTTCCTTACACATGAAGATAAGATTCGCCATCTTCGATCTGCT
1 AGGACTTGTGGCTTAAATCTT--TTCCTTTCACTTGAAGATAAGATTCGTCGTCTTCGATCTGCT
* * *
24177011 CCGCTACTACTTAGGGAGACAAGATCTGTAATTTCCAACTTATTCTACTACAGCCCAGGGATATA
64 CCGCTACTACTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTACAGCCCAGGGATATA
* *
24177076 GGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTCGATCTGCTCC
129 GGACTTGTGGCTTAAATATACTTCCTTACACATGAAGATAAGATTTGCCGTCTTCGATCTGCTCC
* * * *
24177141 TCTATTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCCAAGGGATATAGG
194 GCTACTGCTTAGGGAGAAAAGATCTGTAATTTCCAACCTATTCCACTACTGCCAAGGGATATAGG
* * * * *
24177206 ACTTACGGCTTAAATCTGCTTCCTTACACTTGACGATCAGATTCGCTGTCTTCGATCTGCTTCGC
259 ACTTACGGCTTAAATCTGCTTCCTTACACTTGAAGATAACATTCGCCGTCTTCGATCTGCTCCGC
24177271 TACTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTACCCAGGGATAT
324 TACTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTACCCAGGGATAT
* *
24177331 AGGACTTGCGGCTTAAATCTTATTCCTTTCACTTGAAGATAAGATTTGTCGTCTTCGATCTGCT-
1 AGGACTTGTGGCTTAAATCTT-TTCCTTTCACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTC
* * * * *
24177395 CGCTATTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTGCCTAGGGATATAG
65 CGCTACTACTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTACAGCCCAGGGATATAG
* *
24177460 GACTTGTGGCTTAAATCTACTTCCTTACACATGAAGATAAGATTTGTCGTCTTCGATCTGCTCCG
130 GACTTGTGGCTTAAATATACTTCCTTACACATGAAGATAAGATTTGCCGTCTTCGATCTGCTCCG
*
24177525 CTACTGCTTAGGGAGAAAAGATCTGTAATTTCCAACCTATTCCACTACTGCCCAGGGATATAGGA
195 CTACTGCTTAGGGAGAAAAGATCTGTAATTTCCAACCTATTCCACTACTGCCAAGGGATATAGGA
* *
24177590 CTTGCGGCTTAAATCTGCTTCCTTACACTTGAAGATAACATTTGCCGTCTTCGATCTGCTCCGCT
260 CTTACGGCTTAAATCTGCTTCCTTACACTTGAAGATAACATTCGCCGTCTTCGATCTGCTCCGCT
* * *
24177655 ATTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGCCCAGGGATAT
325 ACTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTACCCAGGGATAT
* *
24177714 AGGACTTGTGGCTTAAATCTGTTTCCCTACTC-CTGGGGAAGATAAGATTCGTCGTCTTCGATCT
1 AGGACTTGTGGCTTAAATCT-TTT-CCT-TTCACT--TGAAGATAAGATTCGTCGTCTTCGATCT
24177778 GCT
61 GCT
24177781 TTGCCGTCAG
Statistics
Matches: 406, Mismatches: 38, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
383 313 0.77
384 60 0.15
385 4 0.01
386 29 0.07
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (383 bp):
AGGACTTGTGGCTTAAATCTTTTCCTTTCACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCC
GCTACTACTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTACAGCCCAGGGATATAGG
ACTTGTGGCTTAAATATACTTCCTTACACATGAAGATAAGATTTGCCGTCTTCGATCTGCTCCGC
TACTGCTTAGGGAGAAAAGATCTGTAATTTCCAACCTATTCCACTACTGCCAAGGGATATAGGAC
TTACGGCTTAAATCTGCTTCCTTACACTTGAAGATAACATTCGCCGTCTTCGATCTGCTCCGCTA
CTGCTTAGGGAGACAAGATCTATAATTTCCAACCTATTCCACTGCTACCCAGGGATAT
Found at i:24177926 original size:88 final size:86
Alignment explanation
Indices: 24177767--24178344 Score: 585
Period size: 88 Copynumber: 6.6 Consensus size: 86
24177757 AAGATTCGTC
* *
24177767 GTCTTCGATCTGCTTTGCCGTC-A-GTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
1 GTCTTCGATCTGCTTCGCTGTCTACG--CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
*
24177830 TAACACCGAGGGAGGCGAGGCTGGT
64 -AA-ACCGAGGGAGGCAAGGCTGGT
* *
24177855 GTCTTCGATCTGCTTCGCTGTCTACGCAAGAAGGCAAGATCTACTATCTTCAACCTGCTATGCCA
1 GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGC--T-CCA
* *
24177920 C-AACCGAGGAAGGAAAGGCTGGT
63 CAAACCGAGGGAGGCAAGGCTGGT
* *
24177943 GTCTTCGATCTGCTTCGTTGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTG
1 GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC--
* *
24178008 AAACCGAAGGAGGCGAGGCTGGT
64 AAACCGAGGGAGGCAAGGCTGGT
* *
24178031 GTCTTCGATCTGCTTCACTGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTG
1 GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC--
* * *
24178096 CAACCGAGGGGGGCAAGGCTGGG
64 AAACCGAGGGAGGCAAGGCTGGT
* * * *
24178119 GTCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCGGCTATCTTTAACCCGCTCCATTG
1 GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA---
*
24178184 C-AACCGAGGGAGGCAAGGCT-TT
63 CAAACCGAGGGAGGCAAGGCTGGT
* * ** * * * * * * * *
24178206 ATTTTTTATCTACTTCGCTGTCAATGTAGGAAGGTAAGATCTACTATCTTTAACCCGCTCCACTT
1 GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC--
* * * *
24178271 CAACCGATGGAGGCAAGACT-TT
64 AAACCGAGGGAGGCAAGGCTGGT
* * * *
24178293 G-CTTTCGATCTGCTTCGCTATCGATGTAGGAAGGCAAGATCTGCTATCTTCA
1 GTC-TTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCA
24178345 CTAATCTGTT
Statistics
Matches: 422, Mismatches: 53, Indels: 31
0.83 0.10 0.06
Matches are distributed among these distances:
84 1 0.00
85 4 0.01
86 1 0.00
87 112 0.27
88 295 0.70
89 2 0.00
90 2 0.00
91 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.27
Consensus pattern (86 bp):
GTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACAA
ACCGAGGGAGGCAAGGCTGGT
Found at i:24178095 original size:45 final size:45
Alignment explanation
Indices: 24177961--24178095 Score: 141
Period size: 45 Copynumber: 3.0 Consensus size: 45
24177951 TCTGCTTCGT
24177961 TGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
1 TGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
** * * * * * * * * *
24178006 TG-AAACCGAAGG-AGGCGAG-GCTGGTGTCTTCGATCTGCTTCAC
1 TGTCTA-CGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
24178049 TGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
1 TGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
24178094 TG
1 TG
24178096 CAACCGAGGG
Statistics
Matches: 64, Mismatches: 22, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
43 24 0.38
44 14 0.22
45 26 0.41
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
TGTCTACGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCAC
Found at i:24188175 original size:7 final size:7
Alignment explanation
Indices: 24188156--24188205 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
24188146 TTAGCCTCTC
24188156 CATTTTT
1 CATTTTT
24188163 -ACTTTTT
1 CA-TTTTT
24188170 CA-TTTT
1 CATTTTT
24188176 CATTTTT
1 CATTTTT
24188183 CA-TTTT
1 CATTTTT
24188189 CATTTTTT
1 CA-TTTTT
24188197 CATTTTT
1 CATTTTT
24188204 CA
1 CA
24188206 CCCTTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 13 0.34
7 18 0.47
8 7 0.18
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:24188181 original size:13 final size:14
Alignment explanation
Indices: 24188165--24188202 Score: 69
Period size: 13 Copynumber: 2.8 Consensus size: 14
24188155 CCATTTTTAC
24188165 TTTTTCATTTTCA-
1 TTTTTCATTTTCAT
24188178 TTTTTCATTTTCAT
1 TTTTTCATTTTCAT
24188192 TTTTTCATTTT
1 TTTTTCATTTT
24188203 TCACCCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTCATTTTCAT
Found at i:24189100 original size:35 final size:37
Alignment explanation
Indices: 24189038--24189112 Score: 91
Period size: 35 Copynumber: 2.1 Consensus size: 37
24189028 TGGCCTCTCC
* * * *
24189038 TTTTCTTTTTTTTGTCATTTTTTATTTTGATCTAGAT
1 TTTTCTTTTTTCTCTCATTTTTCATTTTGACCTAGAT
*
24189075 TTTTC-TTTTTCTCTCA-TTTTCATTTTGACCTTGAT
1 TTTTCTTTTTTCTCTCATTTTTCATTTTGACCTAGAT
24189110 TTT
1 TTT
24189113 GATTTTCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
35 19 0.58
36 9 0.27
37 5 0.15
ACGTcount: A:0.12, C:0.13, G:0.07, T:0.68
Consensus pattern (37 bp):
TTTTCTTTTTTCTCTCATTTTTCATTTTGACCTAGAT
Found at i:24193509 original size:20 final size:18
Alignment explanation
Indices: 24193484--24193523 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 18
24193474 ATGAAATGAA
24193484 ATATTTAATATAAATAATAT
1 ATATTT-ATAT-AATAATAT
24193504 ATATTTATATAATAATAT
1 ATATTTATATAATAATAT
24193522 AT
1 AT
24193524 GTAAAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.50
19 4 0.20
20 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTATATAATAATAT
Found at i:24193901 original size:23 final size:25
Alignment explanation
Indices: 24193875--24193944 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 25
24193865 AAGATACTAT
24193875 ATAATAAAATAAAATA-AT-TAATA
1 ATAATAAAATAAAATATATATAATA
*
24193898 ATAA-AATAATATATATATATATAATA
1 ATAATAA-AATA-AAATATATATAATA
24193924 A-AATAAAAT-AAATATATATAA
1 ATAATAAAATAAAATATATATAA
24193945 CGACTAGGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 2 0.05
23 19 0.47
24 4 0.10
25 7 0.17
26 8 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATAAAATAAAATATATATAATA
Found at i:24198402 original size:32 final size:31
Alignment explanation
Indices: 24198356--24198415 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 31
24198346 ATTAAAAATT
*
24198356 AAAAATTTTAATATAATTTAATATAAAACTA
1 AAAAATTTTAATATAATTTAAAATAAAACTA
*
24198387 AAAATATTTTCATATAATTTAAAATAAAA
1 AAAA-ATTTTAATATAATTTAAAATAAAA
24198416 TAATTTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (31 bp):
AAAAATTTTAATATAATTTAAAATAAAACTA
Found at i:24198420 original size:15 final size:15
Alignment explanation
Indices: 24198400--24198435 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24198390 ATATTTTCAT
24198400 ATAATTTAAAATAAA
1 ATAATTTAAAATAAA
*
24198415 ATAATTTAATATAAA
1 ATAATTTAAAATAAA
*
24198430 AAAATT
1 ATAATT
24198436 ATATTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAATTTAAAATAAA
Found at i:24198501 original size:60 final size:60
Alignment explanation
Indices: 24198432--24198554 Score: 180
Period size: 60 Copynumber: 2.0 Consensus size: 60
24198422 AATATAAAAA
* *
24198432 AATTATATTAAAAATATTATTAAATT-TGTATATT-TTTATT-TTTATTAAATTATGTTTAAT
1 AATTATATT-AAAATATGATTAAATTAT-T-TATTATTTATTATTTATTAAATTATATTTAAT
24198492 AATTATATTAAAATATGATTAAATTATTTATTATTTATTATTTATTAAATTATATTTAAT
1 AATTATATTAAAATATGATTAAATTATTTATTATTTATTATTTATTAAATTATATTTAAT
24198552 AAT
1 AAT
24198555 AATCCTATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
58 4 0.07
59 22 0.38
60 32 0.55
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.55
Consensus pattern (60 bp):
AATTATATTAAAATATGATTAAATTATTTATTATTTATTATTTATTAAATTATATTTAAT
Found at i:24198523 original size:23 final size:22
Alignment explanation
Indices: 24198472--24198524 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
24198462 TATTTTTATT
* *
24198472 TTTATTAAATTATGTTTAATAA
1 TTTATTAAAATATGTTAAATAA
*
24198494 TTATATTAAAATATGATTAAATTA
1 TT-TATTAAAATATG-TTAAATAA
24198518 TTTATTA
1 TTTATTA
24198525 TTTATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTATTAAAATATGTTAAATAA
Found at i:24198526 original size:7 final size:7
Alignment explanation
Indices: 24198514--24198538 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24198504 ATATGATTAA
24198514 ATTATTT
1 ATTATTT
24198521 ATTATTT
1 ATTATTT
24198528 ATTATTT
1 ATTATTT
24198535 ATTA
1 ATTA
24198539 AATTATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
ATTATTT
Found at i:24198755 original size:16 final size:16
Alignment explanation
Indices: 24198734--24198772 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
24198724 TGAATTACTG
* *
24198734 ATTACACCTCTATTCT
1 ATTACAACTCTATTCC
24198750 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
24198766 ATTACAA
1 ATTACAA
24198773 TGAACCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:24200757 original size:21 final size:20
Alignment explanation
Indices: 24200709--24200761 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
24200699 GATTAAGACT
24200709 TGAACTTGAATG--TTTAACA
1 TGAA-TTGAATGTATTTAACA
24200728 TGAATTGAATGTATTTAACA
1 TGAATTGAATGTATTTAACA
*
24200748 TTAGATTGAATGTA
1 TGA-ATTGAATGTA
24200762 AAAATGATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 7 0.23
19 4 0.13
20 9 0.30
21 10 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (20 bp):
TGAATTGAATGTATTTAACA
Found at i:24201836 original size:15 final size:16
Alignment explanation
Indices: 24201816--24201845 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24201806 AAGAATATTA
24201816 TTTAAAA-TTATTATG
1 TTTAAAATTTATTATG
24201831 TTTAAAATTTATTAT
1 TTTAAAATTTATTAT
24201846 TAAAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTAAAATTTATTATG
Found at i:24211799 original size:381 final size:381
Alignment explanation
Indices: 24211090--24212235 Score: 2168
Period size: 381 Copynumber: 3.0 Consensus size: 381
24211080 GGAATATGAA
* * *
24211090 ATTCATGAAATTTAATTTTCACTCCAAGCCTAGAAATTTTCATATATAACACTAGCAACCCATGA
1 ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
*
24211155 ATTCCATAAAATTTAGAATTTACCATGAATTCAACGTCTTTTCAATTTAATCCCTAAATCACGAT
66 ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
* * * * * *
24211220 TTCATCAAAATTCTTTAATAAAATACTTTTAAATACCCACAAACATCTCAAATTAATTATCTAAT
131 GTCATAAAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAAT
24211285 AACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGG
196 AACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGG
* *
24211350 TAAAGGTTAACTGGACCTAAATGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGA
261 TAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGA
24211415 ATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
326 ATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
24211471 ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
1 ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
24211536 ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
66 ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
24211601 GTCATAAAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAAT
131 GTCATAAAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAAT
24211666 AACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGG
196 AACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGG
24211731 TAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGA
261 TAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGA
24211796 ATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
326 ATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
24211852 ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
1 ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
24211917 ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
66 ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
24211982 GTCATAAAAAATT-TTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAA
131 GTCAT-AAAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAA
24212046 TAACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAG
195 TAACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAG
24212111 GTAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAG
260 GTAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAG
24212176 AATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
325 AATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
24212233 ATT
1 ATT
24212236 TTAGAACTGA
Statistics
Matches: 752, Mismatches: 12, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
381 745 0.99
382 7 0.01
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (381 bp):
ATTCACGAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGA
ATTCCATAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGAT
GTCATAAAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAAT
AACTAAAATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGG
TAAAGGTTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGA
ATTGAACTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCT
Found at i:24216187 original size:126 final size:125
Alignment explanation
Indices: 24215946--24216512 Score: 649
Period size: 126 Copynumber: 4.5 Consensus size: 125
24215936 GATAAAATCA
* * * * * *
24215946 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCACCCAT-GTGTACGCGCTTTTGCTATAG
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCC-TCGTGGACGCGCTTTTGCTATAG
* * * *
24216010 TAGGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTTAAAAAACACTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACACTTC
* * * * *
24216071 AAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCGCTCCCTCGTGGATGCGCTTTTACTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTATAGT
* * * * * **
24216136 TGGTCCTGGAAGAAATAATTTCGAGTTGACATTTTTGAGCAAATAGTTTAAAAAATGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACACTTC
* * * * * *
24216197 AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCACGTGGACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTATAGT
* * * * *
24216262 ACGTCCTGAAAAAATAATTTTC-AGTTGACGTTTCTGAGCAAATAGTATAAAGCAACACTGC
66 AGGTCCTGGAAAAATAA-TTTCGACTTGACGTTTCTGAGCAAATAGTATAAA-AAACACTTC
* * *
24216323 AAGCAGCATACTATT-TGAGAAGAATTTGTGAAATTGCACCCTCGTGGACGCGCTTTTGCTATAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTATAG
* * * *
24216387 TTGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACACTTC
* * * *
24216447 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCAT-GTGGATGCGCTTTTGCTACAG
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCC-TCGTGGACGCGCTTTTGCTATAG
24216511 TA
65 TA
24216513 ACATGTTTAG
Statistics
Matches: 368, Mismatches: 66, Indels: 17
0.82 0.15 0.04
Matches are distributed among these distances:
123 2 0.01
124 59 0.16
125 99 0.27
126 206 0.56
127 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTATAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACACTTC
Found at i:24216405 original size:251 final size:250
Alignment explanation
Indices: 24215946--24216512 Score: 748
Period size: 251 Copynumber: 2.3 Consensus size: 250
24215936 GATAAAATCA
* * * * * *
24215946 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCACCCATGTGTACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCATGTGGACGCGCTTTTGCTATAGT
* * *
24216011 AGGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTTAAAAAACACTTCAAGCA
66 ACGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTATAAAAAACACTGCAAGCA
* * * *
24216076 GGATGCTTTGTGAGAAGAATTTGTGAAATCGCTCCCTCGTGGATGCGCTTTTACTACAGTTGGTC
131 GCATACTTTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTTGGTC
* *
24216141 CTGGAAGAAATAATTTCGAGTTGACATTTTTGAGCAAATAGTTTAAAAAAT-GCTTC
196 CTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAG--TAAAAAATCGCTTC
* *
24216197 AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCACGTGGACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCATGTGGACGCGCTTTTGCTATAGT
* * * *
24216262 ACGTCC-TGAAAAAATAATTTTC-AGTTGACGTTTCTGAGCAAATAGTATAAAGCAACACTGCAA
66 ACGTCCTTG-AAAAATAA-TTTCGACTTGACGTTTCTAAGAAAATAGTATAAA-AAACACTGCAA
* * *
24216325 GCAGCATACTATT-TGAGAAGAATTTGTGAAATTGCACCCTCGTGGACGCGCTTTTGCTATAGTT
128 GCAGCATACT-TTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTT
* * *
24216389 GGTCCTGGAA-AAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTC
192 GGTCCTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAGTAAAAAATCGCTTC
* * * * * *
24216447 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATGTGGATGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCATGTGGACGCGCTTTTGCTATAGT
24216512 A
66 A
24216513 ACATGTTTAG
Statistics
Matches: 276, Mismatches: 35, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
249 7 0.03
250 65 0.24
251 125 0.45
252 77 0.28
253 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTATGAAGTCGCGCCCATGTGGACGCGCTTTTGCTATAGT
ACGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTATAAAAAACACTGCAAGCA
GCATACTTTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTTGGTC
CTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAGTAAAAAATCGCTTC
Found at i:24219604 original size:22 final size:22
Alignment explanation
Indices: 24219563--24220592 Score: 1135
Period size: 22 Copynumber: 47.7 Consensus size: 22
24219553 TCAAATTATA
24219563 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24219584 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24219606 TTTAAGTTAAGGGTTTAAGGG-T
1 TTTAAGTTAAGGGTTT-AGGGTT
*
24219628 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24219650 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24219671 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24219693 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24219714 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24219736 TTTAAGTTAAGGGTCTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24219758 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24219779 TTCAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24219800 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24219822 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24219843 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24219865 TTAAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24219887 TTAAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**
24219909 TTTAAGTTAAAAGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24219931 TTTAATTTAAAGG-TTAGGGCT
1 TTTAAGTTAAGGGTTTAGGGTT
24219952 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24219974 TTAAAGTTAA-GGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
24219995 TTCAGGTTTTCAGGTTAAAGGTTAGGGTT
1 TTTAAG--TTAAGG-----GTTTAGGGTT
* *
24220024 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220046 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220067 TTTAAGTTAAGGGTTTAGGGAT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220089 TTTATGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220111 TTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220132 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24220153 TTTATGTTATGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220174 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24220196 TTAAAGTTAAAGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220218 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**
24220239 TTCCAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220259 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220281 TTTAATTTAAGGG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24220302 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220324 TTTAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
24220346 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220367 TTTAGGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24220387 TTTAGGTTAAAGGTTTAGGCTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220409 TTTAATTTAA-GGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24220430 TTTAATTTAAGAGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220452 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
24220473 TTCAGGTTAAGGG-TTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
24220494 TTTAGGTTAAGGGTTTTTGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220516 TTTAATTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
24220536 TTTAAGTTAAAGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* *
24220556 TTTAGGTTAATGGG-TTAGGGGT
1 TTTAAGTTAA-GGGTTTAGGGTT
24220578 TTTAAGTTAAGGGTT
1 TTTAAGTTAAGGGTT
24220593 AGGATTAGGG
Statistics
Matches: 865, Mismatches: 113, Indels: 61
0.83 0.11 0.06
Matches are distributed among these distances:
20 52 0.06
21 365 0.42
22 422 0.49
23 7 0.01
24 1 0.00
27 5 0.01
29 13 0.02
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:24219631 original size:43 final size:42
Alignment explanation
Indices: 24219563--24220592 Score: 1035
Period size: 43 Copynumber: 23.8 Consensus size: 42
24219553 TCAAATTATA
24219563 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
24219606 TTTAAGTTAAGGGTTTAAGGGTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TT-AGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
24219650 TTTAGGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
24219693 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
24219736 TTTAAGTTAAGGGTCTATGATTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
24219779 TTCAGGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
24219822 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
24219865 TTAAAGTTAAGGGTCTAGGGTTTTAAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * *
24219909 TTTAAGTTAAAAGTTTAGGGTTTTTAATTTAAAGG-TTAGGGCT
1 TTTAAGTT-AAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
24219952 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTTAAGGTTTTCAGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTT-AAGTTAAGGGTTT-A-G------GGTT
* * * * *
24220003 TTCAGGTTAAAGGTTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
24220046 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGAT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
24220089 TTTATGTTAAGGGTCTAGGGTTTTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
24220132 TTTAGGTTAAGGGTTAGGGTTTTTATGTTATGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * *
24220174 TTTAAGTTAAAGGTTTAGGGTTTTAAAGTTAAAGGTCTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * *
24220218 TTAAAGTTAAGGTTTAGGGTTTTCCAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
24220259 TTTAGGTTAAGGGTTTAAGGTTTTTAATTTAAGGG-TTAGTGTT
1 TTTAAGTTAAGGG-TT-AGGGTTTTAAGTTAAGGGTTTAGGGTT
*
24220302 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGG-TTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
24220346 TTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
24220387 TTTAGGTTAAAGGTTTAGGCTTTTTAATTTAA-GGTTTAGTGTT
1 TTTAAGTT-AAGGGTTAGG-GTTTTAAGTTAAGGGTTTAGGGTT
* * *
24220430 TTTAATTTAAGAGTTTAAGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAG-GGTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * **
24220473 TTCAGGTTAAGGGTTAGGATTTTTAGGTTAAGGGTTTTTGGTT
1 TTTAAGTTAAGGGTTAGG-GTTTTAAGTTAAGGGTTTAGGGTT
* *
24220516 TTTAATTTAAGGGTTAGGGTTTTAAGTTAAAGG-TTAGGG-T
1 TTTAAGTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
*
24220556 TTTAGGTTAATGGGTTAGGGGTTTTAAGTTAAGGGTT
1 TTTAAGTTAA-GGGTTA-GGGTTTTAAGTTAAGGGTT
24220593 AGGATTAGGG
Statistics
Matches: 827, Mismatches: 114, Indels: 92
0.80 0.11 0.09
Matches are distributed among these distances:
40 9 0.01
41 31 0.04
42 149 0.18
43 455 0.55
44 135 0.16
45 13 0.02
50 13 0.02
51 22 0.03
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.44
Consensus pattern (42 bp):
TTTAAGTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
Found at i:24220002 original size:29 final size:29
Alignment explanation
Indices: 24219957--24220031 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
24219947 GGGCTTTTAA
*
24219957 GTTAAGGGTTT-AGGGTTTTAAAGTT-AAG
1 GTTAAGGTTTTCA-GGTTTTAAAGTTAAAG
* *
24219985 GTTTAAGGTTTTCAGGTTTTCAGGTTAAAG
1 G-TTAAGGTTTTCAGGTTTTAAAGTTAAAG
* *
24220015 GTTAGGGTTTTTAGGTT
1 GTTAAGGTTTTCAGGTT
24220032 AAGGGTTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 33 0.85
30 5 0.13
ACGTcount: A:0.23, C:0.03, G:0.31, T:0.44
Consensus pattern (29 bp):
GTTAAGGTTTTCAGGTTTTAAAGTTAAAG
Found at i:24220619 original size:62 final size:62
Alignment explanation
Indices: 24219564--24220595 Score: 495
Period size: 65 Copynumber: 16.0 Consensus size: 62
24219554 CAAATTATAT
* * * *
24219564 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGGT-
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGG-TT-AGGGTA
* * * *
24219628 TTAAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTAGGGT
1 TT-AAGTTAAAGG-TTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGG-TTAGGG-
*
24219692 TT
61 TA
* * * * * * * * *
24219694 TTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTCTATGATT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGT-TAGGGTA
* * * *
24219758 TTAAAGTT-AAGGTTTAGGGTTTTCAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGT
1 TT-AAGTTAAAGG-TTAAGGTTTT-AGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGG-TTA-GGG
*
24219821 TT
61 TA
* * * *
24219823 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTTTTAAAGTTAAGGGTCTAGGGTT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTT-AAGTTAAGGGT-TAGGGTA
* * ** * * *
24219887 TTAAAGTT-AAGGTTTTAGGGTTTTTAAGTTAAAAGTTTAGGGTTTTTAATTTAAAGGTTAGGGC
1 TT-AAGTTAAAGG--TTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGTTAGGG-
*
24219951 TT
61 TA
* * * * *
24219953 TTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTTAAGGTTTTCAGGTTTTCAGGTTAAAGGT
1 TTAAGTTAAAGG-TTAAGGTTTT-AGGTTAAGGGTTT-AGG------GGTTTT-AAGTTAAGGGT
*
24220017 TAGGGTTT
56 TAGGG-TA
* * * ** *
24220025 TTAGGTTAAGGGTTTATGGTTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGAT
1 TTAAGTTAAAGG-TTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGG-TTAGGG-T
*
24220089 T
62 A
* * * * * * * *
24220090 TTATGTTAAGGGTCTAGGGTTTTAAAGTTAAAGG-TTAGGGTTTTTAGGTTAAGGGTTAGGGTTT
1 TTAAGTTAAAGGT-TAAGGTTTT-AGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGTTAGGG-TA
* ** * * * *
24220154 TTATGTTATGGGTTAAGGTTTTTAAGTTAAAGGTTTA-GGGTTTTAAAGTTAAAGGTCTAGGGTT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTT-AAGTTAAGGGT-TAGGGTA
* *
24220218 TTAAAGTT-AAGGTTTAGGGTTTTCCA-GTTAAGGG-TTA-GGGTTTTAGGTTAAGGGTTTAAGG
1 TT-AAGTTAAAGG-TTAAGGTTTT--AGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGG-TT-AGG
* *
24220279 TTT
60 GTA
* * * *
24220282 TTAATTTAAGGGTT-AGTGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
1 TTAAGTTAAAGGTTAAG-G-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGT-TAGGG-T
*
24220346 T
62 A
* * * * * *
24220347 TTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTA-GGGTTTTAGGTTAAAGGTTTAGGCTTT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTT-AAGGGTTAGG-GTA
* * ** * * * *
24220410 TTAA-TTTAAGGTTTAGTGTTTTTAATTTAAGAGTTTA-AGGTTTTAAAGTTAAGGTTTAGGGTT
1 TTAAGTTAAAGGTTAAG-G-TTTTAGGTTAAGGGTTTAGGGGTTTT-AAGTTAAGGGTTAGGGTA
* * ** * * *
24220473 TTCAGGTTAAGGGTT-AGGATTTTTAGGTTAAGGGTTTTTGGTTTTTAATTTAAGGGTTAGGGTT
1 TT-AAGTTAAAGGTTAAGG--TTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGTTAGGGTA
*
24220537 TTAAGTTAAAGGTTAGGGTTTTAGGTTAATGGG-TTAGGGGTTTTAAGTTAAGGGTTAGG
1 TTAAGTTAAAGGTTAAGGTTTTAGGTTAA-GGGTTTAGGGGTTTTAAGTTAAGGGTTAGG
24220596 ATTAGGGTTT
Statistics
Matches: 803, Mismatches: 99, Indels: 134
0.78 0.10 0.13
Matches are distributed among these distances:
62 43 0.05
63 95 0.12
64 259 0.32
65 282 0.35
66 63 0.08
67 6 0.01
71 8 0.01
72 41 0.05
73 6 0.01
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.44
Consensus pattern (62 bp):
TTAAGTTAAAGGTTAAGGTTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGGGTTAGGGTA
Found at i:24220885 original size:21 final size:21
Alignment explanation
Indices: 24220861--24220907 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
24220851 CTTTGTCCAG
*
24220861 CTTCTGGCGGCGG-TTGTGGTT
1 CTTCTGGCGG-GGATTCTGGTT
*
24220882 CTTCCGGCGGGGATTCTGGTT
1 CTTCTGGCGGGGATTCTGGTT
24220903 CTTCT
1 CTTCT
24220908 AGTAGGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.02, C:0.23, G:0.36, T:0.38
Consensus pattern (21 bp):
CTTCTGGCGGGGATTCTGGTT
Found at i:24221829 original size:7 final size:7
Alignment explanation
Indices: 24221809--24221850 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
24221799 AAATATTAGT
24221809 TATATAC
1 TATATAC
24221816 -ATAATAC
1 TAT-ATAC
24221823 TATATAC
1 TATATAC
*
24221830 TAAATAC
1 TATATAC
*
24221837 TAAATAC
1 TATATAC
24221844 TATATAC
1 TATATAC
24221851 CAATCGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 2 0.06
7 27 0.87
8 2 0.06
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (7 bp):
TATATAC
Found at i:24222056 original size:20 final size:20
Alignment explanation
Indices: 24222019--24222056 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24222009 TTTATTTTTA
*
24222019 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
24222039 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
24222057 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:24222949 original size:51 final size:51
Alignment explanation
Indices: 24222905--24223002 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
24222895 AATTATTTAA
24222905 AAATAGGGATTT-ACGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTGA-GAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * *
24222956 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
24223003 GAGGAAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.45, C:0.04, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:24222978 original size:11 final size:11
Alignment explanation
Indices: 24222964--24223040 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
24222954 ATAAATATGG
24222964 ATTTGAGAGAA
1 ATTTGAGAGAA
*
24222975 ATTTTGA-AGGA
1 A-TTTGAGAGAA
24222986 ATTTGAGAGCAA
1 ATTTGAGAG-AA
24222998 A-TTGAGAGGAA
1 ATTTGAGA-GAA
24223009 ATTT-AGAAGAA
1 ATTTGAG-AGAA
24223020 A-TTGAGAGGAA
1 ATTTGAGA-GAA
24223031 ATTTGAGAGA
1 ATTTGAGAGA
24223041 GGATTAGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 8 0.15
11 30 0.55
12 17 0.31
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:24222989 original size:22 final size:22
Alignment explanation
Indices: 24222964--24223040 Score: 97
Period size: 22 Copynumber: 3.5 Consensus size: 22
24222954 ATAAATATGG
24222964 ATTTGAGAGAAATTTTGA-AGG-A
1 ATTTGAGAGAAA--TTGAGAGGAA
24222986 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAG-AAATTGAGAGGAA
24223009 ATTT-AGAAGAAATTGAGAGGAA
1 ATTTGAG-AGAAATTGAGAGGAA
24223031 ATTTGAGAGA
1 ATTTGAGAGA
24223041 GGATTAGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.08
22 34 0.68
23 12 0.24
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAGGAA
Found at i:24223003 original size:33 final size:33
Alignment explanation
Indices: 24222964--24223040 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
24222954 ATAAATATGG
* *
24222964 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGCAA
*
24222998 A-TTGAGAGGAAATTTAGAAGAAATTGAGAGGAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGCAA
24223031 ATTTGAGAGA
1 ATTTGAGAGA
24223041 GGATTAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 21 0.55
34 17 0.45
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGCAA
Found at i:24226692 original size:22 final size:21
Alignment explanation
Indices: 24226641--24226689 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
24226631 TTATCACTTA
24226641 TTTTTTAAAAATAATTTTAAAT
1 TTTTTTAAAAAT-ATTTTAAAT
*
24226663 TTTTTTAAAAAT-TTTATACAT
1 TTTTTTAAAAATATTT-TAAAT
24226684 TTTTTT
1 TTTTTT
24226690 TAAGGTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 10 0.40
22 12 0.48
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTTAAAAATATTTTAAAT
Found at i:24232922 original size:131 final size:131
Alignment explanation
Indices: 24232627--24232922 Score: 369
Period size: 131 Copynumber: 2.3 Consensus size: 131
24232617 ACTGATTGGA
** * * * **
24232627 AAATTAGCTAAAACAAATGAGACTGTTCATCAAATCAAATCGAATGAACTTAGGTTGCGATCTTA
1 AAATTAGCTAACTCAAATAAGACTGTTCATGATATCAAATCGAATGAACTTAGGTCACGATCTTA
* *
24232692 AATCAGCCAACATTAACAATATCTGCTACGATATTAAACCAACGAGCTATTTGGAATAGCGATAT
66 AATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATAT
24232757 T
131 T
* * *
24232758 AAATTAGCTAACTCAAATAAGATTGTT-ACTGATATTAAATTGAATGAACTTAGGTCACGATCTT
1 AAATTAGCTAACTCAAATAAGACTGTTCA-TGATATCAAATCGAATGAACTTAGGTCACGATCTT
** * * * * * * *
24232822 AAATCAGTGAACCTTTACGATATCAGCTACGATCTTAAATCAGCGAGCTATTTGGAGTAGCAATA
65 AAATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATA
24232887 TT
130 TT
* *
24232889 AATTTAGCTAACTCAGATAAGACTGTTCATGATA
1 AAATTAGCTAACTCAAATAAGACTGTTCATGATA
24232923 AATAAAGTAA
Statistics
Matches: 139, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
130 1 0.01
131 137 0.99
132 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (131 bp):
AAATTAGCTAACTCAAATAAGACTGTTCATGATATCAAATCGAATGAACTTAGGTCACGATCTTA
AATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATAT
T
Found at i:24240007 original size:29 final size:31
Alignment explanation
Indices: 24239966--24240024 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
24239956 GACCTCTTTA
*
24239966 TTTTCTCCTAAAACTTTTACTCC-CTCCCAC
1 TTTTCTCCCAAAACTTTTACTCCTCTCCCAC
24239996 TTTTC-CCCAAAACTTTTACTCCTCTCCCA
1 TTTTCTCCCAAAACTTTTACTCCTCTCCCA
24240025 TCCTACCCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (31 bp):
TTTTCTCCCAAAACTTTTACTCCTCTCCCAC
Found at i:24256432 original size:194 final size:194
Alignment explanation
Indices: 24256080--24256465 Score: 571
Period size: 194 Copynumber: 2.0 Consensus size: 194
24256070 CACTCCCATT
* * *
24256080 AAAATTACAAACGACAAGCTGACGTGGTAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
1 AAAAATACAAACGACAAGATGACGTGGCAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
* * * * *
24256145 ATTTTTACATATTATATCGATTTATTCATAATTTTAAAAAATTAATCATCATAATTTACAAATGT
66 ATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAATGT
* *
24256210 TCTCAATTTGATCCTAATTCTAAAAAAATTTAAAGAAATATATAAAAATACATAAATATTTTCA
131 TCTCAATTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTTCA
* * * *
24256274 AAAAATACAAACGACAAGATGATGTGGCAGTTAAAAATATATGTATAATAATAAATTTAGCC-CT
1 AAAAATACAAACGACAAGATGACGTGGCAATTAAAAA-ATAGGTATAATAACAAATTTAGCCTC-
*
24256338 CAATTTTTAAATATCATATCGATTTAGTCATAACTTT-AAAAATTAACCCTCATAATTTACAAAT
64 CAATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAAT
* *
24256402 GTTCTCAAGTTTGATCCTAATT-TTAAAAAATTCAAAGAAATATATAAAAACACATACATATTTT
129 GTTCTCAA-TTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTT
24256466 TTTAAAAATA
Statistics
Matches: 172, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
194 104 0.60
195 68 0.40
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (194 bp):
AAAAATACAAACGACAAGATGACGTGGCAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
ATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAATGT
TCTCAATTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTTCA
Found at i:24256593 original size:29 final size:29
Alignment explanation
Indices: 24256524--24256604 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 29
24256514 TACTGTTCAC
* *
24256524 AATAAATAATAATATATAAA-A-TTTAAA
1 AATATATAATAATAAATAAATATTTTAAA
*
24256551 AATATATAAAAATAAATAAATATTTTCAAA
1 AATATATAATAATAAATAAATATTTT-AAA
*
24256581 AA-ATATAATAATAAAATTAATATT
1 AATATATAATAAT-AAATAAATATT
24256605 AATATTAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 17 0.38
28 1 0.02
29 12 0.27
30 15 0.33
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (29 bp):
AATATATAATAATAAATAAATATTTTAAA
Found at i:24256605 original size:6 final size:6
Alignment explanation
Indices: 24256582--24256630 Score: 73
Period size: 6 Copynumber: 8.3 Consensus size: 6
24256572 ATTTTCAAAA
* *
24256582 AATA-T AATAAT AAAATT AATATT AATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
24256629 AA
1 AA
24256631 ATCAATACAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
5 4 0.10
6 36 0.90
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (6 bp):
AATATT
Found at i:24263119 original size:38 final size:39
Alignment explanation
Indices: 24263068--24263180 Score: 156
Period size: 38 Copynumber: 2.9 Consensus size: 39
24263058 CGTAACGTTA
24263068 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG-AT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
*
24263106 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGTCGGTGAAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
* * * * * *
24263145 ATTTGGGCTCTATGCCTAGTAGGCTTTATGCTGGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
24263181 TAATTGTATC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
38 35 0.53
39 31 0.47
ACGTcount: A:0.12, C:0.19, G:0.33, T:0.36
Consensus pattern (39 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
Found at i:24267657 original size:21 final size:21
Alignment explanation
Indices: 24267633--24267683 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
24267623 TTCTAAGTAT
24267633 AAATTCTATTTTTGTGAAACA
1 AAATTCTATTTTTGTGAAACA
24267654 AAATTCTATTTTTGTGAAACA
1 AAATTCTATTTTTGTGAAACA
*
24267675 CAATTCTAT
1 AAATTCTAT
24267684 CAGTTTCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (21 bp):
AAATTCTATTTTTGTGAAACA
Found at i:24270072 original size:20 final size:21
Alignment explanation
Indices: 24270034--24270072 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24270024 TAAAATGAAC
24270034 CTGATAAGCCTTGCTAAACAA
1 CTGATAAGCCTTGCTAAACAA
*
24270055 CTGATAAGTCTT-CTAAAC
1 CTGATAAGCCTTGCTAAAC
24270073 CTAAGCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (21 bp):
CTGATAAGCCTTGCTAAACAA
Found at i:24270179 original size:5 final size:5
Alignment explanation
Indices: 24270169--24270200 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
24270159 AAGGATATTT
24270169 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TT
24270201 TAAGGATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:24270652 original size:29 final size:29
Alignment explanation
Indices: 24270611--24270685 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
24270601 ATAAAAATCA
*
24270611 ATAAAATTATAAAAATATTTAAATTTTAT
1 ATAAAATTATAAAAATATTTAAATTATAT
* **
24270640 TTAAAATTATAAATTTATTTAAATTATAT
1 ATAAAATTATAAAAATATTTAAATTATAT
*
24270669 AGAAAATTATATAAAAT
1 ATAAAATTATA-AAAAT
24270686 TTATTATAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
29 34 0.92
30 3 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (29 bp):
ATAAAATTATAAAAATATTTAAATTATAT
Found at i:24270669 original size:19 final size:19
Alignment explanation
Indices: 24270630--24270667 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
24270620 TAAAAATATT
24270630 TAAATTTTATTTAAAATTA
1 TAAATTTTATTTAAAATTA
24270649 TAAA-TTTATTT-AAATTA
1 TAAATTTTATTTAAAATTA
24270666 TA
1 TA
24270668 TAGAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TAAATTTTATTTAAAATTA
Found at i:24270696 original size:22 final size:20
Alignment explanation
Indices: 24270611--24270697 Score: 56
Period size: 18 Copynumber: 4.3 Consensus size: 20
24270601 ATAAAAATCA
*
24270611 ATAAAATTA-TAAAAATATT
1 ATAAAATTATTAAAATTATT
* *
24270630 -TAAATTTTATTTAAA--ATT
1 ATAAA-ATTATTAAAATTATT
* *
24270648 ATAAATTTATTTAAATTATAT
1 ATAAAATTATTAAAATTAT-T
*
24270669 AGAAAATTATATAAAATTTATT
1 ATAAAATTAT-TAAAA-TTATT
24270691 ATAAAAT
1 ATAAAAT
24270698 ATAAATATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
18 17 0.31
19 7 0.13
20 6 0.11
21 9 0.17
22 11 0.20
23 4 0.07
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
ATAAAATTATTAAAATTATT
Found at i:24271262 original size:21 final size:21
Alignment explanation
Indices: 24271225--24271268 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
24271215 TCTGTACTTT
* *
24271225 TATATTTTATAACAATTTTTA
1 TATATTTTATAAAAATTTATA
24271246 TATATTTT-TAATAAATTTATA
1 TATATTTTATAA-AAATTTATA
24271267 TA
1 TA
24271269 AGTTCTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TATATTTTATAAAAATTTATA
Found at i:24273890 original size:21 final size:20
Alignment explanation
Indices: 24273866--24273912 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
24273856 TAAAAATATA
24273866 AAAAATTAGGAAAATATTAAT
1 AAAAATTAGGAAAAT-TTAAT
* * *
24273887 AAAAATTTGTAAAATTTTAT
1 AAAAATTAGGAAAATTTAAT
24273907 AAAAAT
1 AAAAAT
24273913 CATAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (20 bp):
AAAAATTAGGAAAATTTAAT
Found at i:24286219 original size:29 final size:29
Alignment explanation
Indices: 24286129--24286219 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
24286119 TCTTTACATT
* * *
24286129 TTTTATAATTTTCTTACGA-CTTTATAAAA
1 TTTTATTATTTT-TTACGATTTTTATAATA
*
24286158 TTTTATTATTTTTT-CTATATTTCTAT-ATA
1 TTTTATTATTTTTTACGAT-TTT-TATAATA
*
24286187 TTTTATTATTTTTTACGATTTTTATAATT
1 TTTTATTATTTTTTACGATTTTTATAATA
24286216 TTTT
1 TTTT
24286220 CTAATTTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
27 2 0.04
28 5 0.10
29 38 0.75
30 6 0.12
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTTATTATTTTTTACGATTTTTATAATA
Found at i:24286261 original size:47 final size:48
Alignment explanation
Indices: 24286149--24286265 Score: 134
Period size: 47 Copynumber: 2.5 Consensus size: 48
24286139 TTCTTACGAC
* **
24286149 TTTA-TAAAATTTTATTATTTTTTCTATATTTCTATATATTTTATTAT
1 TTTATTAAAATTTTATAATTTTTTCTATATTTAAATATATTTTATTAT
* *
24286196 TTT-TTACGATTTTTATAATTTTTTCTA-ATTTAAATATATTTTTATT-T
1 TTTATTA-AAATTTTATAATTTTTTCTATATTTAAATATA-TTTTATTAT
*
24286243 TTTATTAAAATTTAATAATTTTT
1 TTTATTAAAATTTTATAATTTTT
24286266 ATAAATTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
47 31 0.53
48 27 0.47
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (48 bp):
TTTATTAAAATTTTATAATTTTTTCTATATTTAAATATATTTTATTAT
Found at i:24286270 original size:19 final size:19
Alignment explanation
Indices: 24286241--24286286 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24286231 ATATTTTTAT
24286241 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAAAATTTAATAA
* * *
24286261 TTTTTATAAATTTTATTGA
1 TTTTTATAAAATTTAATAA
24286280 TTTTTAT
1 TTTTTAT
24286287 TTTTTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATAAAATTTAATAA
Found at i:24286285 original size:29 final size:29
Alignment explanation
Indices: 24286149--24286285 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 29
24286139 TTCTTACGAC
**
24286149 TTTATAAAATTTTATTATTTTTTCTATATT
1 TTTAT-AAATTTTATTATTTTTAATATATT
* * *
24286179 TCTATATATTTTATTATTTTT--TACGATT
1 TTTATAAATTTTATTATTTTTAATA-TATT
* * *
24286207 TTTAT-AATTTTTTCTAATTTAAATATATT
1 TTTATAAATTTTAT-TATTTTTAATATATT
* **
24286236 TTTAT--TTTTTATTAAAATTTAATA-ATT
1 TTTATAAATTTTATT-ATTTTTAATATATT
24286263 TTTATAAATTTTATTGATTTTTA
1 TTTATAAATTTTATT-ATTTTTA
24286286 TTTTTTTAAA
Statistics
Matches: 83, Mismatches: 17, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
27 17 0.20
28 25 0.30
29 35 0.42
30 6 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTATAAATTTTATTATTTTTAATATATT
Found at i:24290354 original size:136 final size:136
Alignment explanation
Indices: 24290124--24290567 Score: 640
Period size: 136 Copynumber: 3.3 Consensus size: 136
24290114 AGTGTAGATC
* *
24290124 GTGAGAGAGAG-T--TACTTGGGTATTTATACCTAGCCTTGGGGCATCAATGCTCCAGAGTGCTA
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
*
24290186 TCGGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
24290251 AGAAGT
131 AGAAGT
24290257 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
24290322 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
24290387 AGAAGT
131 AGAAGT
* * * * *
24290393 GTGAGAGGGATTTGGTACTTGGATATTTATACCTAGCCTTCGGGCATCAGTGCTCCAGAATGCTC
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
* * * * *
24290458 TTTGATGCTTAAGTTAGAAAACGAGATAGTGTAATGGGT-----AA-AGC--AAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
*
24290515 GGAAGT
131 AGAAGT
* * *
24290521 AAGAGAGAGGGAGTTGGTACTTGGGTATTTATACCTAGCCTTGGGGC
1 --GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGC
24290568 TGCCTGTTGC
Statistics
Matches: 288, Mismatches: 18, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
128 18 0.06
130 44 0.15
131 2 0.01
133 11 0.04
134 1 0.00
136 212 0.74
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.27
Consensus pattern (136 bp):
GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
AGAAGT
Found at i:24305638 original size:44 final size:43
Alignment explanation
Indices: 24305575--24305780 Score: 214
Period size: 44 Copynumber: 4.7 Consensus size: 43
24305565 TCATTAGGGC
**
24305575 TTATATTCAATGGGTACTATGTATTGGTGTTGGCTATGTGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTAT-TGCCAT
* *
24305619 TTATATTCAGCAGGTACTATGTATCGGTGTTGGCTAATTGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCT-ATTGCCAT
* * * * **
24305663 TTGTATTCAGCAGGTACCATGTATTGATGTTGGCTATGTGTAAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTAT-TGCCAT
* * * *
24305707 TTATATTCAACAGGTACTATGTACTAGTATTGGTTATTACGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTATT--GCCAT
* * *
24305752 TTTTATACAACAGGTACTTTGTATTGGTG
1 TTATATTCAACAGGTACTATGTATTGGTG
24305781 ATGGATACCT
Statistics
Matches: 132, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
43 3 0.02
44 101 0.77
45 28 0.21
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (43 bp):
TTATATTCAACAGGTACTATGTATTGGTGTTGGCTATTGCCAT
Found at i:24308314 original size:21 final size:21
Alignment explanation
Indices: 24308288--24308358 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
24308278 AAAACTACTA
24308288 TGAATGTTGCAACATTGGAAT
1 TGAATGTTGCAACATTGGAAT
** * * *
24308309 TGAATGTCACGACATTGGGAC
1 TGAATGTTGCAACATTGGAAT
24308330 TGAATGTTGCAACATTGGAAT
1 TGAATGTTGCAACATTGGAAT
24308351 CTGAATGT
1 -TGAATGT
24308359 CGTGACATTG
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 32 0.82
22 7 0.18
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (21 bp):
TGAATGTTGCAACATTGGAAT
Found at i:24308347 original size:42 final size:43
Alignment explanation
Indices: 24308288--24308368 Score: 137
Period size: 42 Copynumber: 1.9 Consensus size: 43
24308278 AAAACTACTA
24308288 TGAATGTTGCAACATTGGAAT-TGAATGTCACGACATTGGGAC
1 TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTGGGAC
**
24308330 TGAATGTTGCAACATTGGAATCTGAATGTCGTGACATTG
1 TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTG
24308369 AATATAGACG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 21 0.58
43 15 0.42
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (43 bp):
TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTGGGAC
Found at i:24308366 original size:22 final size:22
Alignment explanation
Indices: 24308288--24308368 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 22
24308278 AAAACTACTA
* *
24308288 TGAATGTTGCAACATTGGAAT-
1 TGAATGTCGCGACATTGGAATC
* *
24308309 TGAATGTCACGACATTGGGA-C
1 TGAATGTCGCGACATTGGAATC
* *
24308330 TGAATGTTGCAACATTGGAATC
1 TGAATGTCGCGACATTGGAATC
*
24308352 TGAATGTCGTGACATTG
1 TGAATGTCGCGACATTG
24308369 AATATAGACG
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 32 0.68
22 15 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (22 bp):
TGAATGTCGCGACATTGGAATC
Found at i:24314726 original size:24 final size:25
Alignment explanation
Indices: 24314699--24314752 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 25
24314689 TTTGGACTAA
24314699 ATTGAATAGTATCTTT-TTAAATAG
1 ATTGAATAGTATCTTTATTAAATAG
*
24314723 ATTGAATAGTATGTTTATTAAATAG
1 ATTGAATAGTATCTTTATTAAATAG
24314748 ATTGA
1 ATTGA
24314753 TGAATTTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (25 bp):
ATTGAATAGTATCTTTATTAAATAG
Found at i:24320128 original size:21 final size:19
Alignment explanation
Indices: 24320074--24320130 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
24320064 CTGTGACAGG
*
24320074 GGTACACGGCCGTGTGGCT
1 GGTACACGACCGTGTGGCT
* * *
24320093 GGAAGACGCCCGTGTGGCT
1 GGTACACGACCGTGTGGCT
24320112 GAGGTACACGACCGTGTGG
1 --GGTACACGACCGTGTGG
24320131 GTAGACCATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 16 0.53
21 14 0.47
ACGTcount: A:0.16, C:0.25, G:0.42, T:0.18
Consensus pattern (19 bp):
GGTACACGACCGTGTGGCT
Found at i:24321773 original size:12 final size:12
Alignment explanation
Indices: 24321756--24321780 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24321746 ATTTTATAAC
24321756 ATAAATATTGTT
1 ATAAATATTGTT
24321768 ATAAATATTGTT
1 ATAAATATTGTT
24321780 A
1 A
24321781 ATAGCCTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:24324241 original size:21 final size:21
Alignment explanation
Indices: 24324200--24324268 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
24324190 CTCACAAAGA
* *
24324200 AAAAAGA-AAGTAAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
24324220 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
24324241 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
24324262 AAAAAGA
1 AAAAAGA
24324269 AACGAAGTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 7 0.16
21 37 0.84
ACGTcount: A:0.58, C:0.09, G:0.22, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:24333918 original size:17 final size:17
Alignment explanation
Indices: 24333898--24333931 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24333888 TTCATTTATT
*
24333898 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
24333915 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
24333932 GCGAGTCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:24334550 original size:27 final size:27
Alignment explanation
Indices: 24334515--24334569 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
24334505 ATAAACTAAC
*
24334515 TACCTTTTCACTACAAATAAAAAAATT
1 TACCATTTCACTACAAATAAAAAAATT
24334542 TACCATTTCACTACAAATAAAAAAATT
1 TACCATTTCACTACAAATAAAAAAATT
24334569 T
1 T
24334570 CACTTAAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (27 bp):
TACCATTTCACTACAAATAAAAAAATT
Found at i:24338387 original size:19 final size:19
Alignment explanation
Indices: 24338365--24338413 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
24338355 TGCAAATGAA
*
24338365 ATAAATAAAATAGAAATAG
1 ATAAATAAAATAAAAATAG
*
24338384 ATAAATAATATAAAAATA-
1 ATAAATAAAATAAAAATAG
*
24338402 ATATA-AAAATAA
1 ATAAATAAAATAA
24338414 TATTATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 6 0.23
18 4 0.15
19 16 0.62
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (19 bp):
ATAAATAAAATAAAAATAG
Found at i:24338393 original size:11 final size:11
Alignment explanation
Indices: 24338386--24338416 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
24338376 AGAAATAGAT
24338386 AAATAATATAA
1 AAATAATATAA
24338397 AAATAATATAA
1 AAATAATATAA
24338408 AAATAATAT
1 AAATAATAT
24338417 TATAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAATAATATAA
Found at i:24338412 original size:30 final size:30
Alignment explanation
Indices: 24338367--24338439 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 30
24338357 CAAATGAAAT
*
24338367 AAATAAAATAGAAATAGATA-AATAATATAA
1 AAATAAAATAAAAATA-ATATAATAATATAA
* *
24338397 AAATAATATAAAAATAATATTATAATATATTA
1 AAATAAAATAAAAATAATATAATAATATA--A
24338429 TAAATAAAATA
1 -AAATAAAATA
24338440 TATTAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 3 0.09
30 22 0.63
32 1 0.03
33 9 0.26
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (30 bp):
AAATAAAATAAAAATAATATAATAATATAA
Found at i:24338423 original size:11 final size:11
Alignment explanation
Indices: 24338387--24338478 Score: 50
Period size: 11 Copynumber: 8.4 Consensus size: 11
24338377 GAAATAGATA
* *
24338387 AATAATATAAA
1 AATAATATTAT
* *
24338398 AATAATATAAA
1 AATAATATTAT
24338409 AATAATATTAT
1 AATAATATTAT
24338420 AAT-ATATTAT
1 AATAATATTAT
*
24338430 AAATAAAATATATT
1 -AATAATAT-TA-T
24338444 AATAA-ATTAAT
1 AATAATATT-AT
24338455 AA-AATA-TAT
1 AATAATATTAT
*
24338464 AAATAA-ATTCT
1 -AATAATATTAT
24338475 AATA
1 AATA
24338479 CTAATATATA
Statistics
Matches: 68, Mismatches: 4, Indels: 19
0.75 0.04 0.21
Matches are distributed among these distances:
9 2 0.03
10 17 0.25
11 35 0.51
12 6 0.09
13 7 0.10
14 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAATATTAT
Found at i:24338431 original size:35 final size:33
Alignment explanation
Indices: 24338384--24338470 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 33
24338374 ATAGAAATAG
24338384 ATAAATAATATAAA-AATAATATAAAAATAATATT-
1 ATAAAT-ATATAAATAA-AATATAAAAATAA-ATTA
**
24338418 ATAATATATTATAAATAAAATATATTAATAAATTA
1 ATAA-ATA-TATAAATAAAATATAAAAATAAATTA
24338453 ATAAAATATATAAATAAA
1 AT-AAATATATAAATAAA
24338471 TTCTAATACT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
34 18 0.39
35 24 0.52
36 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (33 bp):
ATAAATATATAAATAAAATATAAAAATAAATTA
Found at i:24338439 original size:24 final size:24
Alignment explanation
Indices: 24338386--24338487 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 24
24338376 AGAAATAGAT
**
24338386 AAATAATATAAAAAT-AA-TATAA
1 AAATAATATATTAATAAATTATAA
*
24338408 AAATAATAT-TATAATATATTATAA
1 AAATAATATAT-TAATAAATTATAA
24338432 ATAA-AATATATTAATAAATTA-ATA
1 A-AATAATATATTAATAAATTATA-A
*
24338456 AAAT-ATATA--AATAAATTCTAA
1 AAATAATATATTAATAAATTATAA
* *
24338477 TACTAATATAT
1 AAATAATATAT
24338488 ATTAGAATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
21 11 0.17
22 18 0.29
23 9 0.14
24 22 0.35
25 3 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAATAATATATTAATAAATTATAA
Found at i:24338441 original size:16 final size:16
Alignment explanation
Indices: 24338420--24338470 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
24338410 ATAATATTAT
24338420 AATATATTATAAATAA
1 AATATATTATAAATAA
24338436 AATATATTAATAAATTAA
1 AATATATT-ATAAA-TAA
*
24338454 TAAAATA-TATAAATAA
1 -AATATATTATAAATAA
24338470 A
1 A
24338471 TTCTAATACT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 1 0.03
16 11 0.35
17 10 0.32
18 4 0.13
19 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATATTATAAATAA
Found at i:24338455 original size:21 final size:21
Alignment explanation
Indices: 24338431--24338472 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
24338421 ATATATTATA
*
24338431 AATAAAATATATTAATAAATT
1 AATAAAATATATAAATAAATT
24338452 AATAAAATATATAAATAAATT
1 AATAAAATATATAAATAAATT
24338473 CTAATACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AATAAAATATATAAATAAATT
Found at i:24338518 original size:58 final size:56
Alignment explanation
Indices: 24338401--24338523 Score: 135
Period size: 56 Copynumber: 2.2 Consensus size: 56
24338391 ATATAAAAAT
* *
24338401 AATATAAAAATAATATTATAATATATTATAAATAAAATATATTAATAAATTAATAA
1 AATATATAAATAATATTATAATATAATATAAATAAAATATATTAATAAATTAATAA
* * *
24338457 AATATATAAATAA-ATTCTAATACTAATATATATTAGAATATATATAATAGAA-TAGAT-A
1 AATATATAAATAATATTATAATA-TAATATA-AATAAAATATAT-TAATA-AATTA-ATAA
24338515 AATATATAA
1 AATATATAA
24338524 TGAATTTATT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
55 8 0.14
56 18 0.32
57 10 0.18
58 17 0.30
59 4 0.07
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (56 bp):
AATATATAAATAATATTATAATATAATATAAATAAAATATATTAATAAATTAATAA
Found at i:24341301 original size:19 final size:19
Alignment explanation
Indices: 24341279--24341337 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
24341269 TTGCCAAAAT
24341279 TTTTTTGCTGATTCTACTA
1 TTTTTTGCTGATTCTACTA
* * ** *
24341298 TTTTATCCTGA-TAAAAT-
1 TTTTTTGCTGATTCTACTA
*
24341315 TTTTTTGCTAATTCTACTA
1 TTTTTTGCTGATTCTACTA
24341334 TTTT
1 TTTT
24341338 ATCCTAATAA
Statistics
Matches: 27, Mismatches: 11, Indels: 4
0.64 0.26 0.10
Matches are distributed among these distances:
17 8 0.30
18 6 0.22
19 13 0.48
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.58
Consensus pattern (19 bp):
TTTTTTGCTGATTCTACTA
Found at i:24341314 original size:36 final size:36
Alignment explanation
Indices: 24341274--24341347 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
24341264 ACTATTTGCC
* *
24341274 AAAATTTTTTTGCTGATTCTACTATTTTATCCTGAT
1 AAAATTTTTTTGCTAATTCTACTATTTTATCCTAAT
24341310 AAAATTTTTTTGCTAATTCTACTATTTTATCCTAAT
1 AAAATTTTTTTGCTAATTCTACTATTTTATCCTAAT
24341346 AA
1 AA
24341348 CTTATTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (36 bp):
AAAATTTTTTTGCTAATTCTACTATTTTATCCTAAT
Found at i:24341367 original size:35 final size:36
Alignment explanation
Indices: 24341274--24341371 Score: 101
Period size: 36 Copynumber: 2.8 Consensus size: 36
24341264 ACTATTTGCC
* * * *
24341274 AAAATTTTTTTGCTGATTCTACTATTTTATCCTGAT
1 AAAATTATTTTGCTAATACTACTATTTTATCCTAAT
* *
24341310 AAAATTTTTTTGCTAATTCTACTATTTTATCCTAAT
1 AAAATTATTTTGCTAATACTACTATTTTATCCTAAT
* *
24341346 -AACTTATTTTGTTAGA-ACTACTATTT
1 AAAATTATTTTGCTA-ATACTACTATTT
24341372 ATTTCTTGAG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
35 20 0.36
36 35 0.64
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (36 bp):
AAAATTATTTTGCTAATACTACTATTTTATCCTAAT
Found at i:24348604 original size:14 final size:13
Alignment explanation
Indices: 24348587--24348617 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
24348577 GATGGATTCG
24348587 TATAATTCTTATCA
1 TATAATTCTTAT-A
24348601 TATAATTCTTATA
1 TATAATTCTTATA
24348614 TATA
1 TATA
24348618 TTGTACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (13 bp):
TATAATTCTTATA
Found at i:24360072 original size:40 final size:39
Alignment explanation
Indices: 24360028--24360283 Score: 280
Period size: 40 Copynumber: 6.6 Consensus size: 39
24360018 GCTCCTCGTT
*
24360028 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
24360068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
24360108 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
24360148 C-AATG-CTTCGGGACTTA-CCCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* *
24360183 C-AATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * * * *
24360220 CAAAT-CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
24360260 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
24360284 ACATCATTCA
Statistics
Matches: 193, Mismatches: 12, Indels: 22
0.85 0.05 0.10
Matches are distributed among these distances:
34 4 0.02
35 19 0.10
36 15 0.08
37 19 0.10
38 15 0.08
39 18 0.09
40 98 0.51
41 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:24368163 original size:79 final size:79
Alignment explanation
Indices: 24368052--24368311 Score: 338
Period size: 79 Copynumber: 3.3 Consensus size: 79
24368042 GCTCCTCGTT
*
24368052 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
24368116 GATTTAGTAACTCGCA
65 GATTTAGT-ACTCGCA
24368132 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
24368196 ATTTAG--CTCGCA
66 ATTTAGTACTCGCA
* * * **
24368208 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAAT-CCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
24368270 GATATGGTCACTTAGCA
65 GATTTAGT-AC-TCGCA
24368287 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24368312 CATCATTCAA
Statistics
Matches: 162, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
74 3 0.02
75 21 0.13
76 42 0.26
78 10 0.06
79 66 0.41
80 20 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTACTCGCA
Found at i:24368165 original size:39 final size:40
Alignment explanation
Indices: 24368052--24368311 Score: 331
Period size: 40 Copynumber: 6.7 Consensus size: 40
24368042 GCTCCTCGTT
*
24368052 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
24368092 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
24368132 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
24368171 CAAATGCCTTCGGGACTTAACCCGGATTTAG---CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
24368208 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
24368247 CAAAT-CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
24368287 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24368312 CATCATTCAA
Statistics
Matches: 196, Mismatches: 14, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
36 14 0.07
37 21 0.11
38 5 0.03
39 63 0.32
40 88 0.45
41 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:24375577 original size:48 final size:48
Alignment explanation
Indices: 24375521--24375616 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
24375511 TAAATTAACT
24375521 TTGTAAATTAACATACAATTTCATCAATTAGCTAGCCTTTACTGTCCA
1 TTGTAAATTAACATACAATTTCATCAATTAGCTAGCCTTTACTGTCCA
24375569 TTGTAAATTAACATACAATTTCATCAATTAGCTAGCCTTTACTGTCCA
1 TTGTAAATTAACATACAATTTCATCAATTAGCTAGCCTTTACTGTCCA
24375617 CTAATTATAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (48 bp):
TTGTAAATTAACATACAATTTCATCAATTAGCTAGCCTTTACTGTCCA
Found at i:24376944 original size:23 final size:25
Alignment explanation
Indices: 24376893--24376944 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
24376883 TTCAAATTTC
* * *
24376893 AAAATATTTATAAATTTTATTTTCT
1 AAAATATTTATAAATTATATATTCA
24376918 AAAAT-TTTATAAA-TATATATTCA
1 AAAATATTTATAAATTATATATTCA
24376941 AAAA
1 AAAA
24376945 ATTAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
24 8 0.33
25 5 0.21
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (25 bp):
AAAATATTTATAAATTATATATTCA
Found at i:24384563 original size:5 final size:5
Alignment explanation
Indices: 24384553--24384584 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
24384543 TGAGCATTCG
24384553 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
24384585 AAAAAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:24385313 original size:30 final size:31
Alignment explanation
Indices: 24385248--24385318 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
24385238 TTTTGGGGAA
* ** *
24385248 TAAAAGTTTGAGGGAAAGTAAATAGGGGTAG
1 TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
24385279 TAAAATTTTGAGAAAAAGTAAATAGGAG-AG
1 TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
24385309 TAAAATTTTG
1 TAAAATTTTG
24385319 GTGGGAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 12 0.33
31 24 0.67
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (31 bp):
TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
Found at i:24385397 original size:29 final size:29
Alignment explanation
Indices: 24385363--24385442 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
24385353 GTAGTGGAGG
24385363 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
1 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
24385392 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
1 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
*
24385421 GGAGTAAAAGTTTTGAGGGAAA
1 GGAGTAAAAGTTTTGGGGGAAA
24385443 AGTAAAAAGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.36, C:0.00, G:0.42, T:0.21
Consensus pattern (29 bp):
GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
Found at i:24385508 original size:9 final size:9
Alignment explanation
Indices: 24385494--24385530 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
24385484 TATAGTTTGA
24385494 TATTCGAAT
1 TATTCGAAT
24385503 TATTCGAAT
1 TATTCGAAT
* *
24385512 TATTTGAGT
1 TATTCGAAT
24385521 TATTCGAAT
1 TATTCGAAT
24385530 T
1 T
24385531 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24385599 original size:9 final size:9
Alignment explanation
Indices: 24385582--24385612 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24385572 TTGAGTTGAT
24385582 TCGAATAAC
1 TCGAATAAC
*
24385591 TCGATTAAC
1 TCGAATAAC
24385600 TCGAATAAC
1 TCGAATAAC
24385609 TCGA
1 TCGA
24385613 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:24387587 original size:25 final size:25
Alignment explanation
Indices: 24387558--24387629 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
24387548 TCCCGTTATA
24387558 TGGCTCTTCGTGAGCTTCC-CAAAT
1 TGGCTCTTCGTGAGCTTCCTCAAAT
*
24387582 TAGGCTCTTCGTGAGCTTCCTGTTAAAT
1 T-GGCTCTTCGTGAGCTTCC--TCAAAT
*
24387610 TGGCTCTTTGTGAGCTTCCT
1 TGGCTCTTCGTGAGCTTCCT
24387630 GATAGTGCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 1 0.02
25 19 0.45
27 17 0.40
28 5 0.12
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.39
Consensus pattern (25 bp):
TGGCTCTTCGTGAGCTTCCTCAAAT
Found at i:24387622 original size:27 final size:26
Alignment explanation
Indices: 24387558--24387630 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
24387548 TCCCGTTATA
24387558 TGGCTCTTCGTGAGCTTCC--CAAAT
1 TGGCTCTTCGTGAGCTTCCTGCAAAT
*
24387582 TAGGCTCTTCGTGAGCTTCCTGTTAAAT
1 T-GGCTCTTCGTGAGCTTCCTG-CAAAT
*
24387610 TGGCTCTTTGTGAGCTTCCTG
1 TGGCTCTTCGTGAGCTTCCTG
24387631 ATAGTGCTCG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
27 19 0.44
28 5 0.12
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (26 bp):
TGGCTCTTCGTGAGCTTCCTGCAAAT
Found at i:24391095 original size:11 final size:11
Alignment explanation
Indices: 24391079--24391104 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24391069 AAACGATAAA
24391079 TGATTTGTAAT
1 TGATTTGTAAT
24391090 TGATTTGTAAT
1 TGATTTGTAAT
24391101 TGAT
1 TGAT
24391105 AAATGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATTTGTAAT
Found at i:24396720 original size:20 final size:20
Alignment explanation
Indices: 24396685--24396733 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
24396675 ATCATGGTCT
*
24396685 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
24396704 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
24396724 TTGCTTACTT
1 TTGCTTACTT
24396734 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:24397055 original size:50 final size:50
Alignment explanation
Indices: 24396988--24397116 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 50
24396978 CCTGTACTGC
* * ** *
24396988 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATGC-CC-ATG
1 CCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATATC-A-GCACCAACG
* * ** *
24397038 TCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAGCACCAACG
1 CCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATATCAGCACCAACG
24397088 CCATGTCCCAGAAATGGTCTTACATGGGA
1 CCATGTCCCAGAAATGGTCTTACATGGGA
24397117 TCTCATCCCC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
48 2 0.03
49 3 0.05
50 59 0.92
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATATCAGCACCAACG
Found at i:24405167 original size:15 final size:17
Alignment explanation
Indices: 24405147--24405179 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
24405137 GTTCCTCAAC
24405147 TTTGGT-TTTTA-CCAA
1 TTTGGTCTTTTATCCAA
24405162 TTTGGTCTTTTATCCAA
1 TTTGGTCTTTTATCCAA
24405179 T
1 T
24405180 AAGCACCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (17 bp):
TTTGGTCTTTTATCCAA
Found at i:24409535 original size:119 final size:120
Alignment explanation
Indices: 24409363--24409581 Score: 293
Period size: 119 Copynumber: 1.8 Consensus size: 120
24409353 CGTTCAAATA
* * * *
24409363 CCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
* *
24409428 TTAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
66 TCACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
* *
24409483 CCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTT-AGGATCTTAGTCCGGATAT
1 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCAGGA-CTTAGCCCGGATAT
* *
24409545 GGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 AGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
24409582 CATCATTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 66 0.77
120 16 0.19
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
TCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
Found at i:24409581 original size:40 final size:40
Alignment explanation
Indices: 24409357--24409581 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
24409347 GCTACTCGTT
* * * *
24409357 CAAATACCTTCGGGACATAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
24409397 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTTACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
24409437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
24409477 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
24409516 CAAATGCCTT-AGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
24409557 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24409582 CATCATTCAA
Statistics
Matches: 161, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 116 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:24411750 original size:16 final size:17
Alignment explanation
Indices: 24411729--24411761 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
24411719 AAAATACATT
*
24411729 AAATAAAGCTT-TTAAA
1 AAATAAACCTTATTAAA
24411745 AAATAAACCTTATTAAA
1 AAATAAACCTTATTAAA
24411762 TACGAAACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AAATAAACCTTATTAAA
Found at i:24417611 original size:12 final size:12
Alignment explanation
Indices: 24417574--24417611 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
24417564 ACCACTGTGT
24417574 GGCCTACCACAC
1 GGCCTACCACAC
**
24417586 TACCTACCACAC
1 GGCCTACCACAC
24417598 GGCCTACCACAC
1 GGCCTACCACAC
24417610 GG
1 GG
24417612 GCAACTGGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.47, G:0.16, T:0.11
Consensus pattern (12 bp):
GGCCTACCACAC
Found at i:24421675 original size:23 final size:23
Alignment explanation
Indices: 24421627--24421676 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
24421617 TAAAGTAGGT
* *
24421627 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
*
24421650 TATATTATGATTTTTTTAAT-TCA
1 TATA-TATGATTTTTATAATATCA
24421673 TATA
1 TATA
24421677 ATAATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:24428166 original size:20 final size:19
Alignment explanation
Indices: 24428139--24428199 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 19
24428129 AAAGGGTGAG
24428139 AAATAAAA-TTTTAGGGGGA
1 AAATAAAAGTTTT-GGGGGA
24428158 AAATAAAAAGTTTT-GGGG-
1 AAAT-AAAAGTTTTGGGGGA
*
24428176 -AATAAAAG-TTTGCGGGA
1 AAATAAAAGTTTTGGGGGA
*
24428193 AAGTAAA
1 AAATAAA
24428200 TAGGGGGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
15 3 0.09
16 8 0.23
17 3 0.09
18 5 0.14
19 8 0.23
20 4 0.11
21 4 0.11
ACGTcount: A:0.48, C:0.02, G:0.26, T:0.25
Consensus pattern (19 bp):
AAATAAAAGTTTTGGGGGA
Found at i:24431881 original size:14 final size:17
Alignment explanation
Indices: 24431858--24431893 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
24431848 AAGACTTATT
24431858 TTTTTCTCAAG-CTA-A
1 TTTTTCTCAAGCCTATA
24431873 TTTTT-TCAAGCCTATA
1 TTTTTCTCAAGCCTATA
24431889 TTTTT
1 TTTTT
24431894 GCCCAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.26
15 8 0.42
16 6 0.32
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTTCTCAAGCCTATA
Found at i:24432769 original size:7 final size:8
Alignment explanation
Indices: 24432750--24432776 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
24432740 TGTTTTGTAA
24432750 AAAAAATT
1 AAAAAATT
24432758 AAAAAATT
1 AAAAAATT
24432766 AAAAAATT
1 AAAAAATT
24432774 AAA
1 AAA
24432777 TATTATTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAAAATT
Found at i:24437592 original size:32 final size:32
Alignment explanation
Indices: 24437536--24437645 Score: 132
Period size: 32 Copynumber: 3.5 Consensus size: 32
24437526 AAATGGCAAC
* *
24437536 AAGCCATAAGTA-CATTAATATGATTGGCACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
* *
24437567 AAGCCATCAGTAGTAGTAATATGATTGGAACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
* * * * *
24437599 CAGCCATCAGTAACGGTAACATGATCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
24437631 AAGCCATCAGTAGCA
1 AAGCCATCAGTAGCA
24437646 TCGCAGCAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
31 11 0.17
32 53 0.83
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATTGGCACA
Found at i:24437681 original size:26 final size:26
Alignment explanation
Indices: 24437645--24437698 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24437635 CATCAGTAGC
* *
24437645 ATCGCAGCAAAGCTGTCAGCAACAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
*
24437671 ATCGCAACAAAGCTGCCAGTAACAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
24437697 AT
1 AT
24437699 ATGTGGCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCAGCAACAGT
Found at i:24437741 original size:27 final size:27
Alignment explanation
Indices: 24437686--24437750 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
24437676 AACAAAGCTG
*
24437686 CCAGTAACAGTATATGTGGCCAAGTCA
1 CCAGTAACAGTATATGTGGCCAAGCCA
24437713 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
1 CCAGTAACAGT-ATATGTGGCCA-AGCCA
*
24437740 CCAAT-ACAGTA
1 CCAGTAACAGTA
24437751 CTTCCTCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 24 0.71
28 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCCAAGCCA
Found at i:24437846 original size:24 final size:24
Alignment explanation
Indices: 24437826--24437872 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
24437816 ACGGTCAAAC
*
24437826 AAATCACAGACAAATCAGTCATAA
1 AAATCACAGAAAAATCAGTCATAA
*
24437850 AAATCATAGAAAAATCAGTCATA
1 AAATCACAGAAAAATCAGTCATA
24437873 CATAACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.55, C:0.17, G:0.09, T:0.19
Consensus pattern (24 bp):
AAATCACAGAAAAATCAGTCATAA
Done.