Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 84 of 207
Found at i:24438107 original size:27 final size:27
Alignment explanation
Indices: 24438077--24438491 Score: 398
Period size: 27 Copynumber: 15.4 Consensus size: 27
24438067 GGACACTTCG
*
24438077 GTAATTTTGCCCATC-AGGGGTATTTTA
1 GTAATTTTACCCATCGA-GGGTATTTTA
* * *
24438104 GTAATTTTACCCTTCGGGGGTA-TTTC
1 GTAATTTTACCCATCGAGGGTATTTTA
* * * *
24438130 GATAATTTTACCAATTGACGGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
* *
24438157 GATAATTTTACCTATCGAGGGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
*
24438184 GATAATTTTATCCATCGAGGGTATTTT-
1 G-TAATTTTACCCATCGAGGGTATTTTA
* * *
24438211 GATAATTTTACCTATCGGGGGTATTTCA
1 G-TAATTTTACCCATCGAGGGTATTTTA
* * *
24438239 GTAATTTTATCCATTGAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
*
24438266 GTAATTTTACCCATCGAGGGTA-TTTC
1 GTAATTTTACCCATCGAGGGTATTTTA
* *
24438292 GATAATTTTACCCATCGAAGGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
* *
24438319 GATAATTTTACCCATCGAGAGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
*
24438346 GTAATTTTACCCATCGAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
* **
24438373 GTAATTTTACCCATAGAGGGTATTTCG
1 GTAATTTTACCCATCGAGGGTATTTTA
* ** *
24438400 GTAATTTTACCCTTTAAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
* *
24438427 GTAATTTTACCCTTCGAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
*
24438454 GTAATTTTACCCTTCGAGGGTATTTT-
1 GTAATTTTACCCATCGAGGGTATTTTA
24438480 GATAATTTTACC
1 G-TAATTTTACC
24438492 TGTAAGGCCC
Statistics
Matches: 340, Mismatches: 41, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
26 28 0.08
27 308 0.91
28 4 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACCCATCGAGGGTATTTTA
Found at i:24438136 original size:54 final size:55
Alignment explanation
Indices: 24438073--24438491 Score: 461
Period size: 54 Copynumber: 7.8 Consensus size: 55
24438063 ACAGGGACAC
* * *
24438073 TTCGGTAATTTTGCCCATC-AGGGGTATTTTAG-TAATTTTACCCTTCGGGGGTAT
1 TTCGATAATTTTACCCATCGA-GGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * * *
24438127 TTCGATAATTTTACCAATTGACGGTA-TTTCGATAATTTTA-CCTATCGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCT-TCGAGGGTAT
* *
24438181 TTCGATAATTTTATCCATCGAGGGTATTTT-GATAATTTTA-CCTATCGGGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCT-TCGAGGGTAT
* * * *
24438235 TTC-AGTAATTTTATCCATTGAGGGTATTTCAG-TAATTTTACCCATCGAGGGTAT
1 TTCGA-TAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * * *
24438289 TTCGATAATTTTACCCATCGAAGGTA-TTTCGATAATTTTACCCATCGAGAGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * *
24438343 TTCG-TAATTTTACCCATCGAGGGTATTTCAG-TAATTTTACCCATAGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * ** *
24438396 TTCGGTAATTTTACCCTTTAAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
*
24438450 TTC-AGTAATTTTACCCTTCGAGGGTATTTT-GATAATTTTACC
1 TTCGA-TAATTTTACCCATCGAGGGTATTTTAGATAATTTTACC
24438492 TGTAAGGCCC
Statistics
Matches: 316, Mismatches: 36, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
53 56 0.18
54 252 0.80
55 8 0.03
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (55 bp):
TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
Found at i:24438179 original size:81 final size:81
Alignment explanation
Indices: 24438094--24438492 Score: 479
Period size: 81 Copynumber: 4.9 Consensus size: 81
24438084 TGCCCATCAG
* * * * *
24438094 GGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGATAATTTTACCAATTGACGGTATTTCGA
1 GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGA
24438159 TAATTTTACCTATCGA
66 TAATTTTACCTATCGA
* * * * *
24438175 GGGTA-TTTCGATAATTTTATCCATCGAGGGTATTTTGATAATTTTACCTATCGGGGGTATTTC-
1 GGGTATTTTAG-TAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCG
*
24438238 AGTAATTTTATCC-ATTGA
65 A-TAATTTTA-CCTATCGA
* *
24438256 GGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAAGGTATTTCGA
1 GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGA
*
24438321 TAATTTTACCCATCGA
66 TAATTTTACCTATCGA
* * *
24438337 GAGTA-TTTCGTAATTTTACCCATCGAGGGTATTTC-AGTAATTTTACCCATAGAGGGTATTTCG
1 GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCG
* **
24438400 GTAATTTTACCCT-TTAA
65 ATAATTTTA-CCTATCGA
* * * *
24438417 GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTC-AGTAATTTTACCCTTCGAGGGTATTTTG
1 GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCG
24438481 ATAATTTTACCT
65 ATAATTTTACCT
24438493 GTAAGGCCCA
Statistics
Matches: 274, Mismatches: 35, Indels: 19
0.84 0.11 0.06
Matches are distributed among these distances:
79 1 0.00
80 76 0.28
81 191 0.70
82 6 0.02
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGA
TAATTTTACCTATCGA
Found at i:24444831 original size:11 final size:10
Alignment explanation
Indices: 24444809--24444841 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
24444799 GTGCAGATTC
24444809 AAAAAAA-CA
1 AAAAAAATCA
24444818 AAAAAAATCTA
1 AAAAAAATC-A
24444829 AAAAAAATCA
1 AAAAAAATCA
24444839 AAA
1 AAA
24444842 TCAAAGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 5 0.23
11 10 0.45
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAATCA
Found at i:24445753 original size:6 final size:6
Alignment explanation
Indices: 24445732--24445770 Score: 51
Period size: 6 Copynumber: 6.0 Consensus size: 6
24445722 AAAAAAGGGG
24445732 TGAAAA GTGAAAAA TGAAAA TGAAAAA TGAAAA TGAAAA
1 TGAAAA -TG-AAAA TGAAAA TG-AAAA TGAAAA TGAAAA
24445771 AGTAAAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 16 0.53
7 10 0.33
8 4 0.13
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (6 bp):
TGAAAA
Found at i:24445771 original size:7 final size:7
Alignment explanation
Indices: 24445732--24445780 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
24445722 AAAAAAGGGG
*
24445732 TGAAAAG
1 TGAAAAA
24445739 TGAAAAA
1 TGAAAAA
24445746 TG-AAAA
1 TGAAAAA
24445752 TGAAAAA
1 TGAAAAA
24445759 TG-AAAA
1 TGAAAAA
24445765 TGAAAAA
1 TGAAAAA
24445772 -GTAAAAA
1 TG-AAAAA
24445779 TG
1 TG
24445781 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
6 13 0.35
7 23 0.62
8 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:24445771 original size:20 final size:19
Alignment explanation
Indices: 24445732--24445780 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
24445722 AAAAAAGGGG
*
24445732 TGAAAAGTGAAAAATGAAAA
1 TGAAAAATG-AAAATGAAAA
24445752 TGAAAAATGAAAATGAAAA
1 TGAAAAATGAAAATGAAAA
*
24445771 AGTAAAAATG
1 TG-AAAAATG
24445781 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.16
Consensus pattern (19 bp):
TGAAAAATGAAAATGAAAA
Found at i:24445777 original size:13 final size:13
Alignment explanation
Indices: 24445732--24445771 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
24445722 AAAAAAGGGG
24445732 TGAAAAGTGAAAAA
1 TGAAAA-TGAAAAA
24445746 TGAAAATGAAAAA
1 TGAAAATGAAAAA
24445759 TGAAAATGAAAAA
1 TGAAAATGAAAAA
24445772 GTAAAAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (13 bp):
TGAAAATGAAAAA
Found at i:24447153 original size:87 final size:87
Alignment explanation
Indices: 24447007--24447627 Score: 827
Period size: 87 Copynumber: 7.1 Consensus size: 87
24446997 AAGATCAGTG
* * *
24447007 AAGATAGCAGATCTTTCCTTCCTGCATTGACAGTGAAGCAGATTGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
*
24447072 TCGGTTGCAATGGAGCTGGTTA
66 TCGGTTGCAGTGGAGCTGGTTA
* *
24447094 AAGATAGTAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
24447159 TCGGTTGCAGTGGAGCTGGTTA
66 TCGGTTGCAGTGGAGCTGGTTA
24447181 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
24447246 TCGGTTGCAGTGGAG-TAGGTTA
66 TCGGTTGCAGTGGAGCT-GGTTA
* ** ** *
24447268 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG-A-AAACAAAGCCTTGCCTC
** *
24447333 CCCCGGTTGCAGTGGAG-TAGGTTG
64 CATCGGTTGCAGTGGAGCT-GGTTA
* *** * * *
24447357 AAGATAGCAGATCTTGCCTTCTTGTGCTGACAACGAAGCAGATCTAAGATAC-CAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC
* *
24447421 CCTCGGTTGCAGTGGAGCAGGTTA
64 CATCGGTTGCAGTGGAGCTGGTTA
*
24447445 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
24447510 TCGGTTGCAGTGGAG-TAGGTTA
66 TCGGTTGCAGTGGAGCT-GGTTA
* * ** * *
24447532 AAGATAGTAGATCTTACCTTCCTGCGCTGACAACGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG-A-AAACAAAGCCTTGCCTC
* * *
24447597 CCTCGGTTGCAGTGGAGCAGGTTG
64 CATCGGTTGCAGTGGAGCTGGTTA
24447621 AAGATAG
1 AAGATAG
24447628 GGGATTTTAC
Statistics
Matches: 479, Mismatches: 44, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
86 3 0.01
87 279 0.58
88 76 0.16
89 121 0.25
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (87 bp):
AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
TCGGTTGCAGTGGAGCTGGTTA
Found at i:24447373 original size:44 final size:43
Alignment explanation
Indices: 24447062--24447546 Score: 138
Period size: 44 Copynumber: 11.1 Consensus size: 43
24447052 AAAACAAAGC
* * * *
24447062 CTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
* * * * * * *
24447106 CTTGCCTTCCT-GCATTGACAGTGAAGCAGATCGAA-A-A-CAAAGC
1 CTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGT-TAAGATAGCAGA-T
* *
24447149 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
* * * * * * * *
24447193 CTTGCCTTCCT-GCATTGACAGCGAAGCAGATCGAA-A-A-CAAAGC
1 CTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGT-TAAGATAGCAGA-T
* * *
24447236 CTTGCCTCCATCGGTTGCAGTGGAGTAGGTTAAAGATAGTAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
* * * * * * * *
24447280 CTTGCCTTCCT-GCGCTGACAATGAAGCAGATCGAAGAAATA-AAG-C
1 CTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGT-TAAG--ATAGCAGAT
* *
24447325 CTTGCCTCCCCCGGTTGCAGTGGAGTAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
* * * ** * * * *
24447369 CTTGCCT-TCTTGTGCTGACAACGAAGCAGATCTAAGATACCAG-C
1 CTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGT-TAAGATAGCAGAT
24447413 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
* * * * * * * * *
24447457 CTTGCCTTCCT-GCATTGACAGCGAAGCAGATCAA-A-AACAAAGC
1 CTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGTTAAGATAGCAGA-T
* * *
24447500 CTTGCCTCCATCGGTTGCAGTGGAGTAGGTTAAAGATAGTAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT-AAGATAGCAGAT
24447544 CTT
1 CTT
24447547 ACCTTCCTGC
Statistics
Matches: 299, Mismatches: 102, Indels: 80
0.62 0.21 0.17
Matches are distributed among these distances:
42 45 0.15
43 69 0.23
44 94 0.31
45 84 0.28
46 4 0.01
47 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (43 bp):
CTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAGATAGCAGAT
Found at i:24447474 original size:264 final size:263
Alignment explanation
Indices: 24447007--24447627 Score: 953
Period size: 264 Copynumber: 2.4 Consensus size: 263
24446997 AAGATCAGTG
* * ** * * *
24447007 AAGATAGCAGATCTTTCCTTCCTGCATTGACAGTGAAGCAGATTG-A-AAACAAAGCCTTGCCTC
1 AAGATAGTAGATCTTACCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
* * * * * **
24447070 CATCGGTTGCAATGGAGCT-GGTTAAAGATAGTAGATCTTGCCTTCCTGCATTGACAGTGAAGCA
66 CCTCGGTTGCAGTGGAG-TAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAACGAAGCA
*
24447134 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCC
130 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
*
24447199 TTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAG
195 TTCCTGCATTGACAGCGAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAG
24447264 GTTA
260 GTTA
*
24447268 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGTAGATCTTACCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
* * **
24447333 CCCCGGTTGCAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCTTGTGCTGACAACGAAGCAG
66 CCTCGGTTGCAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAACGAAGCAG
* * *
24447398 ATCTAAGATAC-CAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
131 ATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
24447462 CTTCCTGCATTGACAGCGAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTA
194 CTTCCTGCATTGACAGCGAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTA
24447527 GGTTA
259 GGTTA
*
24447532 AAGATAGTAGATCTTACCTTCCTGCGCTGACAACGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGTAGATCTTACCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
*
24447597 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAG
66 CCTCGGTTGCAGTGGAGTAGGTTGAAGATAG
24447628 GGGATTTTAC
Statistics
Matches: 328, Mismatches: 27, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
261 39 0.12
262 2 0.01
263 73 0.22
264 212 0.65
265 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (263 bp):
AAGATAGTAGATCTTACCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
CCTCGGTTGCAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAACGAAGCAG
ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCT
TCCTGCATTGACAGCGAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAGG
TTA
Found at i:24447748 original size:50 final size:50
Alignment explanation
Indices: 24447694--24447847 Score: 157
Period size: 50 Copynumber: 3.1 Consensus size: 50
24447684 TCCTGAGCGG
* *
24447694 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
** * * * * * * * **
24447744 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCTGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
* *
24447794 TGCAGTGGAACAGATTAACGCCACAAT-GGCGAATCTTACTTCTCCGACAT
1 TGCAGTGGAACAGATTAAAGCCAC-ATCGGCGAATCTTACTTCCCCGACAT
24447844 TGCA
1 TGCA
24447848 ATTAAAAAAT
Statistics
Matches: 77, Mismatches: 26, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
50 76 0.99
51 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (50 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
Found at i:24447911 original size:101 final size:100
Alignment explanation
Indices: 24447696--24447914 Score: 228
Period size: 100 Copynumber: 2.2 Consensus size: 100
24447686 CTGAGCGGTG
* * * *
24447696 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGAAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTA
* ** * *
24447761 AAGCTACAACAGCGAATCTTATTTCCCTGGCGGTG
66 AAGCTACAACAGCGAATCTTACTTCCCTAACGATA
* * * *
24447796 CAGTGGAACAGATTAACGCCACAAT-GGCGAATCTTACTTCTCCGACATTGCAATTAAAAAATAT
1 CAGTGAAACAGATTAAAGCCAC-ATCGGCGAATCTTACTTCCCCGACATTGCAATT-AAAAAGAT
* * *
24447860 TAAAGCTACGACAGCGAATCTTGCTT-CTTCAAC-ATCA
64 TAAAGCTACAACAGCGAATCTTACTTCCCT-AACGAT-A
*
24447897 CAGTTAAACAGATTAAAG
1 CAGTGAAACAGATTAAAG
24447915 TTACGAGTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
100 50 0.51
101 48 0.49
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (100 bp):
CAGTGAAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTA
AAGCTACAACAGCGAATCTTACTTCCCTAACGATA
Found at i:24450782 original size:28 final size:28
Alignment explanation
Indices: 24450727--24450808 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
24450717 GAAAGTTCGA
*
24450727 TAATTTTACCC-TTCAAGGGTATTTCAG
1 TAATTTTACCCTTTCGAGGGTATTTCAG
24450754 TAATTTTACCCTTTCGAGGGTATTTCAG
1 TAATTTTACCCTTTCGAGGGTATTTCAG
24450782 TAATTTTACCCTTTCGAGGGTATTTCA
1 TAATTTTACCCTTTCGAGGGTATTTCA
24450809 ATAAATTTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 11 0.21
28 42 0.79
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (28 bp):
TAATTTTACCCTTTCGAGGGTATTTCAG
Found at i:24452800 original size:37 final size:37
Alignment explanation
Indices: 24452750--24452828 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24452740 TTATTATGAA
* *
24452750 GTCTTACCCGGACATAA-TCTCCACACGGAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGGAGTCATCGG
*
24452787 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
24452824 GTCTT
1 GTCTT
24452829 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
Found at i:24453025 original size:47 final size:47
Alignment explanation
Indices: 24452947--24453153 Score: 315
Period size: 47 Copynumber: 4.4 Consensus size: 47
24452937 CCCTTCGGGA
* * * * * * *
24452947 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24452994 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24453041 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24453088 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24453135 CTTATCACATATATACACT
1 CTTATCACATATATACACT
24453154 GTCTTGGCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24455688 original size:35 final size:32
Alignment explanation
Indices: 24455616--24455688 Score: 74
Period size: 35 Copynumber: 2.2 Consensus size: 32
24455606 GAAAGGGGAA
* * **
24455616 AAGAGGTTCGGCCAACAAGAAGAAAAGCATTG
1 AAGAGGTTCGGCCAACAAAAAGAAAAACAGAG
*
24455648 GAGAGGTTCGGCCAAAAGCAAAAAGAAAAACAGAG
1 AAGAGGTTCGGCC--AA-CAAAAAGAAAAACAGAG
24455683 AAGAGG
1 AAGAGG
24455689 AGCAAAACCA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
32 12 0.38
34 2 0.06
35 18 0.56
ACGTcount: A:0.48, C:0.14, G:0.30, T:0.08
Consensus pattern (32 bp):
AAGAGGTTCGGCCAACAAAAAGAAAAACAGAG
Found at i:24459759 original size:41 final size:40
Alignment explanation
Indices: 24459697--24459969 Score: 300
Period size: 41 Copynumber: 6.7 Consensus size: 40
24459687 CATTTGGTGC
* * * *
24459697 TTTAGCAGCGTTTTTGAAAAAGTGCTGCTAATGCTCAGAG-A
1 TTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTCAG-GCT
* **
24459738 TTTAGCGGCGTTTTTCGAAAAGCGCCGCTAATACTCA-ATT
1 TTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCAGGCT
* **
24459778 CTTTAGCGGCGTTTTTAAAAAAGTACCGCTAATGCTCAGGCT
1 -TTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCAGGCT
*
24459820 TTTAGCGGCGTTTTTTAAAAAGCG-CGCTAATGCTCAGGCT
1 TTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTCAGGCT
* *
24459860 TTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGCTCATGCT
1 TTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTCAGGCT
* *
24459901 TTTAGCGACGTTTTTGAAAAAGCGTCGCTAATGCTCAGGCT
1 TTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTCAGGCT
*
24459942 TTTAGTGGCGTTTTTGATAAAGCGCCGC
1 TTTAGCGGCGTTTTTGA-AAAGCGCCGC
24459970 AAAAACATTT
Statistics
Matches: 199, Mismatches: 25, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.03
40 33 0.17
41 154 0.77
42 7 0.04
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCAGGCT
Found at i:24459913 original size:122 final size:123
Alignment explanation
Indices: 24459697--24459966 Score: 359
Period size: 122 Copynumber: 2.2 Consensus size: 123
24459687 CATTTGGTGC
* *
24459697 TTTAGCAGCGTTTTTGAAAAAGTGCTGCTAATGCTCAGAGATTTAGCGGCGTTTTTCGAAAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTCAGAGATTTAGCGGCGTTTTTCGAAAAGCG
* * *
24459762 CCGCTAATACTCAATTCTTTAGCGGCGTTTTTAAAAAAGTACCGCTAATGCTCAGGCT
66 CCGCTAATACTCAATGCTTTAGCGACGTTTTTAAAAAAGCACCGCTAATGCTCAGGCT
* * *
24459820 TTTAGCGGCGTTTTTTAAAAAGCGC-GCTAATGCTCAG-GCTTTTAGCGGTGTTTTT-GAAAAAG
1 TTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTCAGAG-ATTTAGCGGCGTTTTTCG-AAAAG
* * **
24459882 CGCCGCTAATGCTC-ATGCTTTTAGCGACGTTTTTGAAAAAGCGTCGCTAATGCTCAGGCT
64 CGCCGCTAATACTCAATGC-TTTAGCGACGTTTTTAAAAAAGCACCGCTAATGCTCAGGCT
* *
24459942 TTTAGTGGCGTTTTTGATAAAGCGC
1 TTTAGCGGCGTTTTTGAAAAAGCGC
24459967 CGCAAAAACA
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
121 5 0.04
122 102 0.79
123 22 0.17
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (123 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTCAGAGATTTAGCGGCGTTTTTCGAAAAGCG
CCGCTAATACTCAATGCTTTAGCGACGTTTTTAAAAAAGCACCGCTAATGCTCAGGCT
Found at i:24460309 original size:14 final size:14
Alignment explanation
Indices: 24460292--24460328 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
24460282 GGGTTTAATA
* *
24460292 TATATGTTTTAGGG
1 TATATGGTTTAAGG
24460306 TATATGGTTTAAGG
1 TATATGGTTTAAGG
24460320 TATATGGTT
1 TATATGGTT
24460329 AATTTAGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TATATGGTTTAAGG
Found at i:24460405 original size:14 final size:15
Alignment explanation
Indices: 24460377--24460409 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
24460367 AAGGTTTATA
24460377 GATTATGGAATTAGG
1 GATTATGGAATTAGG
24460392 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
24460406 GATT
1 GATT
24460410 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:24460573 original size:138 final size:139
Alignment explanation
Indices: 24460429--24460695 Score: 346
Period size: 145 Copynumber: 1.9 Consensus size: 139
24460419 GGGTTGCGAT
* *
24460429 TTAGGGG-TTA-AGGGTTAGGGGTTAGAGATTAAGAGTT-AGGAATTTAGGGTTTATAGATTT-A
1 TTAGGGGTTTAGAGGGTTAGGGGTTAGAGATTAAGAATTAAGG-ATTTAGGGTTTAGAGATTTAA
*
24460490 GTGT-CAATATAGGGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAGGT
65 G-GTCCAAT-TAGGGTTTAAGGTTTAGATTAATTAGTA-TTTTTAATTTATATATTAAATAAGGT
24460554 TTAGGGGCAGTAG
127 TTAGGGGCAGTAG
* * *
24460567 TTAGGGGTTTAGGGTTTTGGGTTAGGGGTTAGAGGTTAAGAATTAATGATTTAGGGTTTAGAGAT
1 TTAGGGGTTTA--G---AGGGTTAGGGGTTAGAGATTAAGAATTAAGGATTTAGGGTTTAGAGAT
* *
24460632 TTAAGGTCCAGTTAGGGTTTAAGGTTTAGATTAATTAGTATTTTTAATTTATATATTAATTAAG
61 TTAAGGTCCAATTAGGGTTTAAGGTTTAGATTAATTAGTATTTTTAATTTATATATTAAATAAG
24460696 TTCTTATATA
Statistics
Matches: 111, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
138 7 0.06
139 3 0.03
144 23 0.21
145 71 0.64
146 7 0.06
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (139 bp):
TTAGGGGTTTAGAGGGTTAGGGGTTAGAGATTAAGAATTAAGGATTTAGGGTTTAGAGATTTAAG
GTCCAATTAGGGTTTAAGGTTTAGATTAATTAGTATTTTTAATTTATATATTAAATAAGGTTTAG
GGGCAGTAG
Found at i:24465713 original size:43 final size:43
Alignment explanation
Indices: 24465666--24465827 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
24465656 CATTTTTTTA
* * *
24465666 TAGCGGCGTTTGTAACATAAGTGTCGCTAAAGGTCATGATCTT
1 TAGCGGCGTTTGTAGCATAAGCGCCGCTAAAGGTCATGATCTT
* * ** *
24465709 TAGCGGCGTTTGTAGTATATGCGCCGCTAAATATCATGGTCTT
1 TAGCGGCGTTTGTAGCATAAGCGCCGCTAAAGGTCATGATCTT
* * * *
24465752 TAGTGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTTATGATCTT
1 TAGCGGCGTTTGTAGCATAAGCGCCGCTAAAGGTCATGATCTT
* *
24465795 TAGCGGCGTTTTTTCA-CATAAACGCCGCTAAAG
1 TAGCGGCG-TTTGT-AGCATAAGCGCCGCTAAAG
24465828 ACTTAAAAAA
Statistics
Matches: 95, Mismatches: 22, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
43 76 0.80
44 19 0.20
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TAGCGGCGTTTGTAGCATAAGCGCCGCTAAAGGTCATGATCTT
Found at i:24468362 original size:25 final size:25
Alignment explanation
Indices: 24468334--24468381 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24468324 AAATGGTAAC
*
24468334 CTCCTCCGAGCTAAATAACGGTATG
1 CTCCTCCAAGCTAAATAACGGTATG
* *
24468359 CTCCTCCAAGCTGAATAATGGTA
1 CTCCTCCAAGCTAAATAACGGTA
24468382 AGCACATACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (25 bp):
CTCCTCCAAGCTAAATAACGGTATG
Found at i:24474999 original size:16 final size:16
Alignment explanation
Indices: 24474980--24475050 Score: 79
Period size: 17 Copynumber: 4.3 Consensus size: 16
24474970 CACTACTTAG
24474980 AGTTTTCACAGTCTAT
1 AGTTTTCACAGTCTAT
* * *
24474996 AGTTGTCTCAGTTTAT
1 AGTTTTCACAGTCTAT
**
24475012 AGTGTTTCATTGTCTAT
1 AGT-TTTCACAGTCTAT
24475029 AGTTTTTCACAGTCTAT
1 AG-TTTTCACAGTCTAT
24475046 AGTTT
1 AGTTT
24475051 CAAATCTGAA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
16 19 0.44
17 23 0.53
18 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.15, T:0.49
Consensus pattern (16 bp):
AGTTTTCACAGTCTAT
Found at i:24476385 original size:48 final size:47
Alignment explanation
Indices: 24476319--24476409 Score: 155
Period size: 48 Copynumber: 1.9 Consensus size: 47
24476309 CACACACTAT
* *
24476319 TTGTGGACAAGCCACCACATAATTGCCGATAAATGACCACATAACACA
1 TTGTGGACAAGCCACCACATAATTGCCAAT-AACGACCACATAACACA
24476367 TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAA
24476410 TCGCAGATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 12 0.29
48 29 0.71
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.19
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAACACA
Found at i:24478215 original size:27 final size:27
Alignment explanation
Indices: 24478177--24478571 Score: 223
Period size: 27 Copynumber: 14.9 Consensus size: 27
24478167 ATGACTATTT
*
24478177 TACCCCTAATA-GATAAAAATGATTGAAA
1 TACCCCT-ATAGGAT-AAAATGACTGAAA
* *
24478205 TACCCCTATAGGGTAAAATGACTGAAG
1 TACCCCTATAGGATAAAATGACTGAAA
*
24478232 TACCTCC-ATAGGGTAAAATGACTGAAA
1 TACC-CCTATAGGATAAAATGACTGAAA
*
24478259 TA-CCCTCATAGGATAAAATGACTAAAA
1 TACCCCT-ATAGGATAAAATGACTGAAA
* * * *
24478286 TACCCTTATAGGGTAGAATGACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * * * *
24478313 TACCCCCATAGGGTAGAATAACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * * **
24478340 TGCCCCTATTGGGTAAAATGACCAAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * * **
24478367 TA-CCCTCCTAGGGTAGAATGACCAAAA
1 TACCCCT-ATAGGATAAAATGACTGAAA
*
24478394 TA-CCCTCATAAGG-TAAAAT-AATCGAAA
1 TACCCCT-AT-AGGATAAAATGACT-GAAA
* *
24478421 TACCCCTATAGGATAAAATAACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * *
24478448 CACCCTTATAGGGTAAAATGACTGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
24478475 TA--CC-----G-TAAAATGA-TCGAAA
1 TACCCCTATAGGATAAAATGACT-GAAA
** *
24478494 TACCCCTATAGGGGAAAATGA-TCAAAA
1 TACCCCTATAGGATAAAATGACT-GAAA
* * **
24478521 TACCCTTATAGGGTAAAATGACTGTTA
1 TACCCCTATAGGATAAAATGACTGAAA
*
24478548 TACCCCTA-GGAGATAAAATGACTG
1 TACCCCTATAG-GATAAAATGACTG
24478572 TTATGGCCTT
Statistics
Matches: 297, Mismatches: 48, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.00
19 14 0.05
20 1 0.00
21 2 0.01
25 3 0.01
26 11 0.04
27 242 0.81
28 23 0.08
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (27 bp):
TACCCCTATAGGATAAAATGACTGAAA
Found at i:24478270 original size:54 final size:53
Alignment explanation
Indices: 24478192--24478542 Score: 267
Period size: 54 Copynumber: 6.6 Consensus size: 53
24478182 CTAATAGATA
* * *
24478192 AAAATGATTGAAATACCCCTATAGGGTAAAATGACTGAAGTA-CCTCCATAGGGT
1 AAAATGACTGAAATACCCC-ATAGGGTAAAATGACCGAAATACCCT-CATAGGGT
* ** *
24478246 AAAATGACTGAAATACCCTCATAGGATAAAATGACTAAAATACCCTTATAGGGT
1 AAAATGACTGAAATACCC-CATAGGGTAAAATGACCGAAATACCCTCATAGGGT
* * * * * *
24478300 AGAATGACCGAAATACCCCCATAGGGTAGAATAACCGAAATGCCC-CTATTGGGT
1 AAAATGACTGAAATA-CCCCATAGGGTAAAATGACCGAAATACCCTC-ATAGGGT
** * * * *
24478354 AAAATGACCAAAATACCCTCCTAGGGTAGAATGACCAAAATACCCTCATAAGGT
1 AAAATGACTGAAATACCC-CATAGGGTAAAATGACCGAAATACCCTCATAGGGT
* * * * *
24478408 AAAAT-AATCGAAATACCCCTATAGGATAAAATAACCGAAACACCCTTATAGGGT
1 AAAATGACT-GAAATACCCC-ATAGGGTAAAATGACCGAAATACCCTCATAGGGT
* *
24478462 AAAATGACTGAAATA--CC-----GTAAAATGATCGAAATACCC-CTATAGGGG
1 AAAATGACTGAAATACCCCATAGGGTAAAATGACCGAAATACCCTC-ATAGGGT
* *
24478508 AAAATGA-TCAAAATACCCTTATAGGGTAAAATGAC
1 AAAATGACT-GAAATACCC-CATAGGGTAAAATGAC
24478543 TGTTATACCC
Statistics
Matches: 234, Mismatches: 44, Indels: 38
0.74 0.14 0.12
Matches are distributed among these distances:
45 1 0.00
46 34 0.15
48 1 0.00
52 2 0.01
53 5 0.02
54 181 0.77
55 10 0.04
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (53 bp):
AAAATGACTGAAATACCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGT
Found at i:24478322 original size:81 final size:80
Alignment explanation
Indices: 24478202--24478542 Score: 333
Period size: 81 Copynumber: 4.3 Consensus size: 80
24478192 AAAATGATTG
* * * *
24478202 AAATACCCCTATAGGGTAAAATGACTGAAGTACCTCCATAGGGTAAAATGACTGAAATA-CCCTC
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACTGAAATACCCCT-
*
24478266 ATAGGATAAAATGACTA
64 ATAGGATAAAATGACCA
* * * *
24478283 AAATACCCTTATAGGGTAGAATGACCGAAATACCCCCATAGGGTAGAATAACCGAAATGCCCCTA
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACTGAAATACCCCTA
* *
24478348 TTGGGTAAAATGACCA
65 TAGGATAAAATGACCA
** * * * * *
24478364 AAATACCCTCCTAGGGTAGAATGACCAAAATACCCTCATAAGGTAAAATAATCGAAATACCCCTA
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATACT-GAAATACCCCTA
* *
24478429 TAGGATAAAATAACCG
65 TAGGATAAAATGACCA
* *
24478445 AAACACCCTTATAGGGTAAAATGACTGAAATA---CC-----GTAAAATGA-TCGAAATACCCCT
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACT-GAAATACCCCT
** *
24478501 ATAGGGGAAAATGATCA
64 ATAGGATAAAATGACCA
24478518 AAATACCCTTATAGGGTAAAATGAC
1 AAATACCCTTATAGGGTAAAATGAC
24478543 TGTTATACCC
Statistics
Matches: 219, Mismatches: 38, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
73 56 0.26
74 1 0.00
78 1 0.00
80 1 0.00
81 156 0.71
82 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (80 bp):
AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATACTGAAATACCCCTAT
AGGATAAAATGACCA
Found at i:24478484 original size:19 final size:19
Alignment explanation
Indices: 24478460--24478497 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24478450 CCCTTATAGG
24478460 GTAAAATGA-CTGAAATACC
1 GTAAAATGATC-GAAATACC
24478479 GTAAAATGATCGAAATACC
1 GTAAAATGATCGAAATACC
24478498 CCTATAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (19 bp):
GTAAAATGATCGAAATACC
Found at i:24478522 original size:46 final size:46
Alignment explanation
Indices: 24478434--24478524 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
24478424 CCCTATAGGA
* * *
24478434 TAAAATAACCGAAACACCCTTATAGGGTAAAATGACTGAAATACCG
1 TAAAATAACCGAAACACCCCTATAGGGGAAAATGACTAAAATACCG
* * *
24478480 TAAAATGATCGAAATACCCCTATAGGGGAAAATGA-TCAAAATACC
1 TAAAATAACCGAAACACCCCTATAGGGGAAAATGACT-AAAATACC
24478525 CTTATAGGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 1 0.03
46 37 0.97
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (46 bp):
TAAAATAACCGAAACACCCCTATAGGGGAAAATGACTAAAATACCG
Found at i:24478551 original size:73 final size:73
Alignment explanation
Indices: 24478406--24478544 Score: 215
Period size: 73 Copynumber: 1.9 Consensus size: 73
24478396 CCCTCATAAG
* *
24478406 GTAAAATAATCGAAATACCCCTATAGGATAAAATAACCGAAACACCCTTATAGGGTAAAATGACT
1 GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCAAAACACCCTTATAGGGTAAAATGACT
24478471 GAAATACC
66 GAAATACC
* * * * *
24478479 GTAAAATGATCGAAATACCCCTATAGGGGAAAATGATCAAAATACCCTTATAGGGTAAAATGACT
1 GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCAAAACACCCTTATAGGGTAAAATGACT
24478544 G
66 G
24478545 TTATACCCCT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 59 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.22
Consensus pattern (73 bp):
GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCAAAACACCCTTATAGGGTAAAATGACT
GAAATACC
Found at i:24478989 original size:28 final size:28
Alignment explanation
Indices: 24478957--24479135 Score: 236
Period size: 28 Copynumber: 6.4 Consensus size: 28
24478947 TATTGCACTG
* ** *
24478957 CACTGTTACTATATTGGATTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
*
24478985 CACTGATT-CTGTATTGGGCTCAGGCCTA
1 CACTG-TTACTGTATTGGGCTAAGGCCTA
24479013 CACTGTTACTGTATTGGGCTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
* *
24479041 CACTGTTACTATATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
*
24479069 CACTGTTATTGTATTGGGCTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
* * *
24479097 TACTATTACTGTATTGGGCTAAGACCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
24479125 CACTG-TACTGT
1 CACTGTTACTGT
24479136 CACTGAATAG
Statistics
Matches: 132, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
27 8 0.06
28 122 0.92
29 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCTA
Found at i:24479106 original size:84 final size:84
Alignment explanation
Indices: 24478957--24479130 Score: 269
Period size: 84 Copynumber: 2.1 Consensus size: 84
24478947 TATTGCACTG
* * *
24478957 CACTGTTACTATATTGGATTAAGGCCCACACTGATTCTGTATTGGGCTCAGGCCTACACTGTTAC
1 CACTGTTACTATATTGGACTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCTACACTATTAC
*
24479022 TGTATTGGGCTAAGGCCTA
66 TGTATTGGGCTAAGACCTA
* * *
24479041 CACTGTTACTATATTGGGCTAAGGCCCACACTG-TTATTGTATTGGGCTAAGGCCTATACTATTA
1 CACTGTTACTATATTGGACTAAGGCCCACACTGATT-CTGTATTGGGCTAAGGCCTACACTATTA
24479105 CTGTATTGGGCTAAGACCTA
65 CTGTATTGGGCTAAGACCTA
24479125 CACTGT
1 CACTGT
24479131 ACTGTCACTG
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
83 2 0.02
84 80 0.98
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (84 bp):
CACTGTTACTATATTGGACTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCTACACTATTAC
TGTATTGGGCTAAGACCTA
Found at i:24489794 original size:13 final size:13
Alignment explanation
Indices: 24489778--24489812 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
24489768 AGCTTTTTTA
*
24489778 TTTTAATTTTAAT
1 TTTTCATTTTAAT
*
24489791 TTTTCATTATAAT
1 TTTTCATTTTAAT
24489804 TTTTCATTT
1 TTTTCATTT
24489813 GTTTGTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCATTTTAAT
Found at i:24492760 original size:6 final size:6
Alignment explanation
Indices: 24492751--24492828 Score: 77
Period size: 6 Copynumber: 12.3 Consensus size: 6
24492741 TATATTTATA
* *
24492751 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTT-TCT TTTGCT TTTGCT
1 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGT-T TTTGTT TTTGTT
*
24492799 TTTGCTT TTTATTT TTTGCTTT TTTGTT TT
1 TTTG-TT TTT-GTT TTTG--TT TTTGTT TT
24492829 ATTTTTATTT
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
5 1 0.02
6 46 0.74
7 9 0.15
8 6 0.10
ACGTcount: A:0.01, C:0.06, G:0.13, T:0.79
Consensus pattern (6 bp):
TTTGTT
Found at i:24492817 original size:14 final size:14
Alignment explanation
Indices: 24492798--24492840 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
24492788 TTGCTTTTGC
24492798 TTTTGCTTTTTATT
1 TTTTGCTTTTTATT
*
24492812 TTTTGCTTTTT-TG
1 TTTTGCTTTTTATT
*
24492825 TTTT-ATTTTTATT
1 TTTTGCTTTTTATT
24492838 TTT
1 TTT
24492841 ATTATACACT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 11 0.44
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.81
Consensus pattern (14 bp):
TTTTGCTTTTTATT
Found at i:24492817 original size:20 final size:20
Alignment explanation
Indices: 24492792--24492834 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
24492782 TTTCTTTTGC
24492792 TTTTGCTTTTGCT-TTTTATT
1 TTTTGCTTTT-CTGTTTTATT
*
24492812 TTTTGCTTTTTTGTTTTATT
1 TTTTGCTTTTCTGTTTTATT
24492832 TTT
1 TTT
24492835 ATTTTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.05, C:0.07, G:0.09, T:0.79
Consensus pattern (20 bp):
TTTTGCTTTTCTGTTTTATT
Found at i:24492833 original size:26 final size:24
Alignment explanation
Indices: 24492761--24492840 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 24
24492751 TTTGTTTTTG
24492761 TTTTTG-TTTTTGTTTTTGTTTT-T
1 TTTTTGCTTTTTGTTTTT-TTTTAT
24492784 TCTTTTGC-TTTTGCTTTTGCTTTTTAT
1 T-TTTTGCTTTTTG-TTTT--TTTTTAT
24492811 TTTTTGCTTTTTTGTTTTATTTTTAT
1 TTTTTGC-TTTTTGTTTT-TTTTTAT
24492837 TTTT
1 TTTT
24492841 ATTATACACT
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
23 1 0.02
24 10 0.21
25 4 0.08
26 21 0.44
27 7 0.15
28 5 0.10
ACGTcount: A:0.04, C:0.06, G:0.10, T:0.80
Consensus pattern (24 bp):
TTTTTGCTTTTTGTTTTTTTTTAT
Found at i:24493748 original size:5 final size:5
Alignment explanation
Indices: 24493738--24493762 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24493728 GAATTGCTGA
24493738 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
24493763 TTGTTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:24509016 original size:42 final size:42
Alignment explanation
Indices: 24508970--24509053 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
24508960 GTCTCCTCAA
**
24508970 CCGTGCAACTCACTGAGATGCCGTACACGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
* * * *
24509012 CCGTGTAACTCTCTGAGCTGCCACACATGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
24509054 TCGTTTGCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.19
Consensus pattern (42 bp):
CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
Found at i:24516450 original size:33 final size:32
Alignment explanation
Indices: 24516346--24516461 Score: 151
Period size: 32 Copynumber: 3.6 Consensus size: 32
24516336 TAAATGAATA
* *
24516346 TTGTTATCATTTAACAAAATTAAAGTTGATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* *
24516378 TTGTTATCATTTTACAAAATTAAAGTTGTAAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* * *
24516410 TTATTATCATTTCACAAAATGAAAACTTGAAAT
1 TTGTTATCATTTCACAAAAT-TAAAGTTGAAAT
*
24516443 TTGTTATCATTTCATAAAA
1 TTGTTATCATTTCACAAAA
24516462 CCGCGCGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 47 0.64
33 26 0.36
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (32 bp):
TTGTTATCATTTCACAAAATTAAAGTTGAAAT
Found at i:24520375 original size:2 final size:2
Alignment explanation
Indices: 24520368--24520400 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24520358 AAGCCATAAT
24520368 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24520401 CTAATATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24522313 original size:19 final size:19
Alignment explanation
Indices: 24522289--24522342 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
24522279 AATCTTCAAG
24522289 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24522308 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24522327 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
24522343 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24522318 original size:36 final size:36
Alignment explanation
Indices: 24522278--24522349 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
24522268 TATGGAAACA
24522278 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
24522314 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
24522350 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:24522333 original size:38 final size:40
Alignment explanation
Indices: 24522289--24522365 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
24522279 AATCTTCAAG
24522289 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
24522327 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
24522366 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:24529982 original size:46 final size:46
Alignment explanation
Indices: 24529889--24529986 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 46
24529879 TTTCTAATTT
* *
24529889 TTTGTGTGATTCAATGGATTGGGTTTATTTTGGGAGTGGATCGGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
* *
24529935 TTTGTGTGAGTCAGTGGATTGGGTTTATTTTGGGAGTAGG-TTAGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGT-GGATCAGTG
24529981 TTTGTG
1 TTTGTG
24529987 GCCTGGTTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
46 45 0.96
47 2 0.04
ACGTcount: A:0.14, C:0.03, G:0.38, T:0.45
Consensus pattern (46 bp):
TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
Found at i:24530289 original size:30 final size:30
Alignment explanation
Indices: 24530254--24530326 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
24530244 TTTTTAGTGG
*
24530254 CACACGGCCGTGTCACTAGCTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
24530284 CACACGGCCATGTCACTAACTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
24530314 CACATGGCCGTGT
1 CACACGGCCGTGT
24530327 GGCCAGATCG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (30 bp):
CACACGGCCGTGTCACTAACTCGTATGTGA
Found at i:24543020 original size:46 final size:46
Alignment explanation
Indices: 24542967--24543058 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
24542957 CCCAAATGCT
24542967 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
1 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
24543013 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
1 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
24543059 CCCATTCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.28, G:0.09, T:0.22
Consensus pattern (46 bp):
TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
Found at i:24568193 original size:5 final size:5
Alignment explanation
Indices: 24568183--24568277 Score: 163
Period size: 5 Copynumber: 19.0 Consensus size: 5
24568173 ATATGATAAA
* * *
24568183 ATATG ATATG ATATG ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
24568233 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
24568278 GTATACAATC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 89 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:24583113 original size:37 final size:37
Alignment explanation
Indices: 24583060--24583140 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
24583050 TGTGATACGA
24583060 ATTTAGCCTAGACTAGTAATTTGTTGTCATTTTAAAG
1 ATTTAGCCTAGACTAGTAATTTGTTGTCATTTTAAAG
* * *
24583097 GTTTAGCCTGGTCTAGTAATTTGTTGTCATTTTAAAG
1 ATTTAGCCTAGACTAGTAATTTGTTGTCATTTTAAAG
24583134 ATTTAGC
1 ATTTAGC
24583141 TTGGACTGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (37 bp):
ATTTAGCCTAGACTAGTAATTTGTTGTCATTTTAAAG
Found at i:24587502 original size:10 final size:10
Alignment explanation
Indices: 24587487--24587511 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24587477 CAAATCTAAC
24587487 ATTATGTAAA
1 ATTATGTAAA
24587497 ATTATGTAAA
1 ATTATGTAAA
24587507 ATTAT
1 ATTAT
24587512 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:24587554 original size:55 final size:55
Alignment explanation
Indices: 24587495--24587620 Score: 243
Period size: 55 Copynumber: 2.3 Consensus size: 55
24587485 ACATTATGTA
*
24587495 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGATTAGTAAAATTATC
24587550 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGATTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGATTAGTAAAATTATC
24587605 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
24587621 GGTTAGGGTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGATTAGTAAAATTATC
Found at i:24587657 original size:29 final size:29
Alignment explanation
Indices: 24587615--24587739 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
24587605 AAATTATGTA
*
24587615 AAATTAGGTTAGGGTTAGGATTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
24587644 AAATTAGGTTAGGGTTAGGGGTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
24587673 AAATTAGGTTAGGG-CAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATT
* *
24587703 CAATTAGGTTAGGATTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
24587732 CAATTAGG
1 AAATTAGG
24587740 GTTTTTATTA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
28 1 0.01
29 61 0.71
30 23 0.27
31 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:24587825 original size:36 final size:36
Alignment explanation
Indices: 24587785--24587899 Score: 92
Period size: 36 Copynumber: 3.2 Consensus size: 36
24587775 ATATCAAATA
*
24587785 ATATCAAAATAACTCGAAAAAATTTCTATGCCTATT
1 ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
* **** * * *
24587821 ATATC-AAATAAACTTCTATTTTATTAC-AT-CAAATA
1 ATATCAAAAT-AAC-TCGAAAAAATTTCTATGCATATT
*
24587856 ATATCAAAATAACTCGAAAAAATTTCTATGCGTATT
1 ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
*
24587892 ACATCAAA
1 ATATCAAA
24587900 TAAACTTCTA
Statistics
Matches: 55, Mismatches: 19, Indels: 10
0.65 0.23 0.12
Matches are distributed among these distances:
34 7 0.13
35 17 0.31
36 24 0.44
37 7 0.13
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (36 bp):
ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
Found at i:24587843 original size:71 final size:71
Alignment explanation
Indices: 24587745--24587929 Score: 334
Period size: 71 Copynumber: 2.6 Consensus size: 71
24587735 TTAGGGTTTT
*
24587745 TATTACATCAAATAGAACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTT
1 TATTACATCAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTT
24587810 CTATGCC
65 CTATGCC
*
24587817 TATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
*
24587882 TATGCG
66 TATGCC
24587888 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
24587930 AATTTAAATA
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
71 96 0.88
72 13 0.12
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
TATGCC
Found at i:24587851 original size:25 final size:25
Alignment explanation
Indices: 24587817--24587927 Score: 83
Period size: 25 Copynumber: 4.6 Consensus size: 25
24587807 TTTCTATGCC
*
24587817 TATTATATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
*
24587842 TATTACATCAAAT-AA-TATC-A--A
1 TATTACATCAAATAAACT-TCTATTT
* * * **
24587863 AATAAC-TCGAAA-AAATTTCTATGCG
1 TATTACATC-AAATAAACTTCTAT-TT
24587888 TATTACATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
24587913 TATTACATCAAATAA
1 TATTACATCAAATAA
24587928 TAAATTTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
20 2 0.03
21 11 0.17
22 2 0.03
23 2 0.03
24 4 0.06
25 34 0.52
26 11 0.17
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (25 bp):
TATTACATCAAATAAACTTCTATTT
Found at i:24588357 original size:18 final size:18
Alignment explanation
Indices: 24588330--24588364 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24588320 CGGAAAAGGA
* *
24588330 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
24588348 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
24588365 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:24590209 original size:49 final size:50
Alignment explanation
Indices: 24590149--24590327 Score: 240
Period size: 50 Copynumber: 3.6 Consensus size: 50
24590139 TCATTCGATA
24590149 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTACAATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAATT
* * *
24590198 CACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGTTTTACGACT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAATT
* *
24590248 CACGTAGTAGCCTTCAC-TCAGTACTACACACGTGCTCAAGCTTCTT--AGTT
1 CACGTAGTAGCCTTCACAT-AGTACTACACACGTGATCAAG-TT-TTACAATT
* *
24590298 CACATAGTAGCCTTCACTTAGTACTACACA
1 CACGTAGTAGCCTTCACATAGTACTACACA
24590328 TATAACCGTA
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
49 37 0.32
50 74 0.64
51 3 0.03
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAATT
Found at i:24590261 original size:50 final size:50
Alignment explanation
Indices: 24590144--24590484 Score: 252
Period size: 51 Copynumber: 6.8 Consensus size: 50
24590134 TTTTATCATT
*
24590144 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
* *
24590193 CAATTCACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
* *
24590243 CGACTCACGTAGTAGCCTTCAC-TCAGTACTACACACGTGCTCAAGCTTCTTA
1 CGATTCACGTAGTAGCCTTCACAT-AGTACTACACACGTGATCAAG-TT-TTA
* * ** * * *
24590295 -G-TTCACATAGTAGCCTTCACTTAGTACTACACATATAACCGTAG-TTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTA
** * * * * *
24590343 CCGAGACATGTGGTAGCATTCACACAGTACTAGACACGT-ACTCAAAGCTTCTT-
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGA-TC-AAG-TT-TTA
* * * * * * *
24590396 -GGTGCACATAGTAGCCTTCACTTAGTACAACACATGTGA-CCA-TTACTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTT--TTA
* *
24590445 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
24590485 TTCATCGATA
Statistics
Matches: 225, Mismatches: 49, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
47 2 0.01
48 6 0.03
49 42 0.19
50 79 0.35
51 89 0.40
52 4 0.02
53 1 0.00
54 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
Found at i:24590423 original size:51 final size:50
Alignment explanation
Indices: 24590153--24590429 Score: 137
Period size: 50 Copynumber: 5.5 Consensus size: 50
24590143 TCGATACACG
* * *
24590153 TAGTAGCCTTCACAT-AGTACTACACACGTGA-TC-AG-TT-TTACAATTCACG
1 TAGTAGCCTTCAC-TCAGTACTACACACGT-ACTCAAGCTTCTT--AGTGCACA
* *
24590202 TAGTAGCCTTCACAT-AGTACTACACACGTGA-ACAAG-TT-TTACGACT-CACG
1 TAGTAGCCTTCAC-TCAGTACTACACACGT-ACTCAAGCTTCTTA-G--TGCACA
* *
24590252 TAGTAGCCTTCACTCAGTACTACACACGTGCTCAAGCTTCTTAGTTCACA
1 TAGTAGCCTTCACTCAGTACTACACACGTACTCAAGCTTCTTAGTGCACA
* ** * * ** * **
24590302 TAGTAGCCTTCACTTAGTACTACACATATAAC-CGTAGTTTACCGAG-ACATG
1 TAGTAGCCTTCACTCAGTACTACACACGT-ACTC-AAGCTT-CTTAGTGCACA
* * * * *
24590353 TGGTAGCATTCACACAGTACTAGACACGTACTCAAAGCTTCTTGGTGCACA
1 TAGTAGCCTTCACTCAGTACTACACACGTACTC-AAGCTTCTTAGTGCACA
* *
24590404 TAGTAGCCTTCACTTAGTACAACACA
1 TAGTAGCCTTCACTCAGTACTACACA
24590430 TGTGACCATT
Statistics
Matches: 176, Mismatches: 38, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
48 1 0.01
49 34 0.19
50 75 0.43
51 60 0.34
52 6 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTTCACTCAGTACTACACACGTACTCAAGCTTCTTAGTGCACA
Found at i:24590429 original size:102 final size:101
Alignment explanation
Indices: 24590148--24590483 Score: 326
Period size: 102 Copynumber: 3.3 Consensus size: 101
24590138 ATCATTCGAT
* * * *
24590148 ACACGTAGTAGCCTTCACATAGTACTACACACGTGA-TC-AG-TT-TTACAATTCACGTAGTAGC
1 ACACGTAGTAGCCTTCACACAGTACTACACACGT-ACTCAAGCTTCTT--AGTGCACATAGTAGC
* * ** * * *
24590209 CTTCACATAGTACTACACACGTGAACAAGT-TTTA-CGAC
63 CTTCACTTAGTACAACACATAT-AACCAGTACTTACCGAG
* * * *
24590247 TCACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAAGCTTCTTAGTTCACATAGTAGCCTT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTACTCAAGCTTCTTAGTGCACATAGTAGCCTT
* *
24590312 CACTTAGTACTACACATATAACC-GTAGTTTACCGAG
66 CACTTAGTACAACACATATAACCAGTA-CTTACCGAG
* * * * *
24590348 ACATGTGGTAGCATTCACACAGTACTAGACACGTACTCAAAGCTTCTTGGTGCACATAGTAGCCT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTACTC-AAGCTTCTTAGTGCACATAGTAGCCT
* * * * *
24590413 TCACTTAGTACAACACATGTGACCATTACTTATCGAT
65 TCACTTAGTACAACACATATAACCAGTACTTACCGAG
24590450 ACACGTAGTAGCCTTCACACAGTACTACACACGT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGT
24590484 GTTCATCGAT
Statistics
Matches: 197, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
98 2 0.01
99 36 0.18
100 38 0.19
101 36 0.18
102 83 0.42
103 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (101 bp):
ACACGTAGTAGCCTTCACACAGTACTACACACGTACTCAAGCTTCTTAGTGCACATAGTAGCCTT
CACTTAGTACAACACATATAACCAGTACTTACCGAG
Found at i:24592326 original size:15 final size:16
Alignment explanation
Indices: 24592301--24592331 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
24592291 ATAATTATCT
24592301 AAAAATACTTAAATAA
1 AAAAATACTTAAATAA
24592317 AAAAAT-CTTAAATAA
1 AAAAATACTTAAATAA
24592332 TATTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATACTTAAATAA
Found at i:24592402 original size:25 final size:25
Alignment explanation
Indices: 24592368--24592418 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
24592358 CCATTTTCAT
*
24592368 TTGCTCCACCGATATGTGATTCCTA
1 TTGCTCCACCAATATGTGATTCCTA
24592393 TTGCTCCACCAATATGTGATTCCTA
1 TTGCTCCACCAATATGTGATTCCTA
24592418 T
1 T
24592419 CAAGATGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (25 bp):
TTGCTCCACCAATATGTGATTCCTA
Found at i:24592482 original size:21 final size:21
Alignment explanation
Indices: 24592455--24592500 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
24592445 GATGAAAATA
**
24592455 TAAAAAAAT-TAAAATTATTT
1 TAAAAAAATATAAAAAAATTT
24592475 TAAAAAAATATAAAAAAATTT
1 TAAAAAAATATAAAAAAATTT
24592496 TAAAA
1 TAAAA
24592501 TTATTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAAAAAATATAAAAAAATTT
Found at i:24592499 original size:32 final size:30
Alignment explanation
Indices: 24592449--24592513 Score: 112
Period size: 32 Copynumber: 2.1 Consensus size: 30
24592439 GCCACTGATG
24592449 AAAATATAAAAAAATTAAAATTATTTTAAA
1 AAAATATAAAAAAATTAAAATTATTTTAAA
24592479 AAAATATAAAAAAATTTTAAAATTATTTTAAA
1 AAAATATAAAAAAA--TTAAAATTATTTTAAA
24592511 AAA
1 AAA
24592514 TGAAATTGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 14 0.42
32 19 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAATATAAAAAAATTAAAATTATTTTAAA
Found at i:24592570 original size:29 final size:29
Alignment explanation
Indices: 24592538--24592626 Score: 66
Period size: 29 Copynumber: 3.3 Consensus size: 29
24592528 AATTGAAATT
24592538 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
24592567 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* *
24592589 CAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
24592618 AAATTTGGA
1 AAATATGGA
24592627 AGGAAATTGA
Statistics
Matches: 40, Mismatches: 13, Indels: 14
0.60 0.19 0.21
Matches are distributed among these distances:
22 8 0.20
23 4 0.10
24 4 0.10
27 5 0.12
28 4 0.10
29 15 0.38
ACGTcount: A:0.39, C:0.01, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:24592570 original size:51 final size:51
Alignment explanation
Indices: 24592515--24592636 Score: 192
Period size: 51 Copynumber: 2.4 Consensus size: 51
24592505 TTTAAAAAAT
*
24592515 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
* *
24592566 GAAATTGAGAGGAAATTGAAATTCAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
24592617 GAAATTTG-GAAGGAAATTGA
1 GAAA-TTGAG-AGGAAATTGA
24592637 GAGGATTAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 53 0.80
52 13 0.20
ACGTcount: A:0.41, C:0.01, G:0.30, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:24592626 original size:12 final size:12
Alignment explanation
Indices: 24592609--24592634 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24592599 TTGAGAGAAT
24592609 TTTGGAAGGAAA
1 TTTGGAAGGAAA
24592621 TTTGGAAGGAAA
1 TTTGGAAGGAAA
24592633 TT
1 TT
24592635 GAGAGGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
TTTGGAAGGAAA
Found at i:24596314 original size:11 final size:11
Alignment explanation
Indices: 24596292--24596323 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
24596282 CTAAGCTCGA
24596292 AAATATTTTATT
1 AAATA-TTTATT
24596304 AAATATTTATT
1 AAATATTTATT
24596315 AAATATTTA
1 AAATATTTA
24596324 CGGAGTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AAATATTTATT
Found at i:24601519 original size:44 final size:43
Alignment explanation
Indices: 24601463--24601550 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
24601453 GGCGTTTATG
* *
24601463 TAAAAAAAGCCGCTATAA-AACATGACTTTTAGCTGCACTTTTA
1 TAAAAAAAGCCGCTA-AAGAACATGACCTTTAGCGGCACTTTTA
* *
24601506 TAAAAAAACGCCGCTAAAGAATATGACCTTTAGCGGCGCTTTTA
1 TAAAAAAA-GCCGCTAAAGAACATGACCTTTAGCGGCACTTTTA
24601550 T
1 T
24601551 CACAAACACC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (43 bp):
TAAAAAAAGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTA
Found at i:24601863 original size:28 final size:28
Alignment explanation
Indices: 24601827--24601884 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
24601817 TTAGTTAATG
24601827 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
24601855 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
24601883 TT
1 TT
24601885 GATATGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.52, C:0.14, G:0.03, T:0.31
Consensus pattern (28 bp):
TTAAAAAACTAACTAATACAATAATGCT
Found at i:24604784 original size:53 final size:54
Alignment explanation
Indices: 24604704--24604808 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 54
24604694 CAACAGGATT
*
24604704 TCAAAACTTACATTATTTAGTTTCCTAGTTTA-GGGTAAAATTGAAGCTTGGCG
1 TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGGCG
* **
24604757 TCAAAACTTCCATTATTTAGTTTCCTAGTCTATTTGTAAAATTGAAGCTTGG
1 TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGG
24604809 GTCTAGGGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 30 0.64
54 17 0.36
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (54 bp):
TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGGCG
Found at i:24605741 original size:19 final size:20
Alignment explanation
Indices: 24605697--24605740 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
24605687 TAAAATTATA
24605697 ATTTTTAGTTTTTGTATTTC
1 ATTTTTAGTTTTTGTATTTC
24605717 ATTTTTA-TTTTTGTATTTC
1 ATTTTTAGTTTTTGTATTTC
24605736 -TTTTT
1 ATTTTT
24605741 TTGTTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.21
19 12 0.50
20 7 0.29
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.75
Consensus pattern (20 bp):
ATTTTTAGTTTTTGTATTTC
Found at i:24606162 original size:8 final size:7
Alignment explanation
Indices: 24606145--24606313 Score: 60
Period size: 7 Copynumber: 23.7 Consensus size: 7
24606135 ACATAAATCA
24606145 TAAACCC
1 TAAACCC
24606152 TAAACCCC
1 TAAA-CCC
*
24606160 T-AACAC
1 TAAACCC
*
24606166 TTAACCC
1 TAAACCC
*
24606173 TTAACCC
1 TAAACCC
*
24606180 TTAAAACC
1 -TAAACCC
* *
24606188 TAAATCA
1 TAAACCC
24606195 TAAACCC
1 TAAACCC
*
24606202 -CAACCC
1 TAAACCC
*
24606208 TTAAACCA
1 -TAAACCC
24606216 T-AACCC
1 TAAACCC
*
24606222 ATAATCCC
1 -TAAACCC
24606230 TAAACCC
1 TAAACCC
* *
24606237 ATAATCCA
1 -TAAACCC
*
24606245 TAAACCT
1 TAAACCC
*
24606252 TAAA--A
1 TAAACCC
*
24606257 TAGTAACTCT
1 TA--AAC-CC
* *
24606267 TAAAACT
1 TAAACCC
24606274 TAAACCC
1 TAAACCC
*
24606281 TAAACCA
1 TAAACCC
*
24606288 TATACCC
1 TAAACCC
*
24606295 TAAACCA
1 TAAACCC
24606302 TAAACCC
1 TAAACCC
24606309 TAAAC
1 TAAAC
24606314 TATAATGGTC
Statistics
Matches: 120, Mismatches: 29, Indels: 26
0.69 0.17 0.15
Matches are distributed among these distances:
5 2 0.02
6 12 0.10
7 80 0.67
8 24 0.20
10 2 0.02
ACGTcount: A:0.44, C:0.34, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:24606237 original size:15 final size:15
Alignment explanation
Indices: 24606203--24606250 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
24606193 CATAAACCCC
* *
24606203 AACCCTTAAACCAT-
1 AACCCATAATCCATA
*
24606217 AACCCATAATCCCTA
1 AACCCATAATCCATA
24606232 AACCCATAATCCATA
1 AACCCATAATCCATA
24606247 AACC
1 AACC
24606251 TTAAAATAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:24606255 original size:22 final size:21
Alignment explanation
Indices: 24606206--24606313 Score: 74
Period size: 22 Copynumber: 5.0 Consensus size: 21
24606196 AAACCCCAAC
*
24606206 CCTTAAACCATAACCCATAAT
1 CCTTAAACCATAACCCATAAA
* *
24606227 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAACCCATAAA
** * *
24606249 CCTTAAAATAGTAACTCTTAAA
1 CCTTAAACCA-TAACCCATAAA
* * * *
24606271 ACTTAAACCCTAAACCATATA
1 CCTTAAACCATAACCCATAAA
*
24606292 CCCTAAACCATAAACCC-TAAA
1 CCTTAAACCAT-AACCCATAAA
24606313 C
1 C
24606314 TATAATGGTC
Statistics
Matches: 62, Mismatches: 22, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
21 26 0.42
22 36 0.58
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.22
Consensus pattern (21 bp):
CCTTAAACCATAACCCATAAA
Found at i:24606294 original size:14 final size:14
Alignment explanation
Indices: 24606203--24606318 Score: 76
Period size: 14 Copynumber: 8.1 Consensus size: 14
24606193 CATAAACCCC
24606203 AACCCTTAAACCAT-
1 AACCC-TAAACCATA
* *
24606217 AACCCATAATCCCTA
1 AACCC-TAAACCATA
*
24606232 AACCCATAATCCATA
1 AACCC-TAAACCATA
*
24606247 AACCTTAAA--ATA
1 AACCCTAAACCATA
* * *
24606259 GTAACTCTTAAAACTTA
1 --AAC-CCTAAACCATA
24606276 AACCCTAAACCATA
1 AACCCTAAACCATA
*
24606290 TACCCTAAACCATA
1 AACCCTAAACCATA
*
24606304 AACCCTAAACTATA
1 AACCCTAAACCATA
24606318 A
1 A
24606319 TGGTCACTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
12 3 0.04
14 51 0.61
15 27 0.33
17 2 0.02
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (14 bp):
AACCCTAAACCATA
Found at i:24606474 original size:14 final size:14
Alignment explanation
Indices: 24606457--24606510 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
24606447 CATAAAACAA
24606457 AAACCATAAACCTT
1 AAACCATAAACCTT
* *
24606471 AAACCCTTAACCCTT
1 AAA-CCATAAACCTT
* * *
24606486 AAATCACAACCCTT
1 AAACCATAAACCTT
24606500 AAACCATAAAC
1 AAACCATAAAC
24606511 AATAATCCTT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCATAAACCTT
Found at i:24606593 original size:40 final size:39
Alignment explanation
Indices: 24606533--24606651 Score: 139
Period size: 40 Copynumber: 3.0 Consensus size: 39
24606523 ATCATAAAGT
* * *
24606533 TCGATCTATAACGGCATTTTTCAAGAGCTGCAGCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAGAGC-GCCGCTAATGC
*
24606573 TCGATCTATAGCGGCGTTTTTCAAGATGCGCCGCTAATAC
1 TCGATCTATAGCGGCGTTTTTCAAGA-GCGCCGCTAATGC
* * * * *
24606613 TCGATCTATAGCTGCGTTTTTGAAAAACGCAGCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAGAGCGCCGCTAATGC
24606652 CACTAAAGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 10 0.15
40 56 0.82
41 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (39 bp):
TCGATCTATAGCGGCGTTTTTCAAGAGCGCCGCTAATGC
Found at i:24606735 original size:40 final size:40
Alignment explanation
Indices: 24606691--24606881 Score: 274
Period size: 40 Copynumber: 4.8 Consensus size: 40
24606681 TAATTTTTTT
* * *
24606691 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTTGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *
24606731 GCGGCGCTTTTTCAAAAAGCACTGCTAATGCTCGATCTATA
1 GCGGCG-TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *
24606772 GCGACGTTTTTCAAGAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *
24606812 GTGGCGTTTTTCAAGAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *
24606852 GCGACGTTTTTCAAAAAACGCCGCTAATGC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGC
24606882 CACTAAAGCT
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 101 0.75
41 34 0.25
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:24609081 original size:8 final size:8
Alignment explanation
Indices: 24609068--24609101 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
24609058 AAAGTGATCG
24609068 AAAAAAAT
1 AAAAAAAT
24609076 AAAAAAAT
1 AAAAAAAT
24609084 AAGAAAAAT
1 AA-AAAAAT
*
24609093 AAGAAAAT
1 AAAAAAAT
24609101 A
1 A
24609102 TTCTGTGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:24617532 original size:6 final size:6
Alignment explanation
Indices: 24617521--24617568 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
24617511 GTCTCCCTGC
* *
24617521 AAAATA AAAATA AAAATA AATAATA AGAAA-A AAAATT AAAATT AAAAT
1 AAAATA AAAATA AAAATA AA-AATA A-AAATA AAAATA AAAATA AAAAT
24617569 GTGTATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
5 3 0.08
6 27 0.71
7 7 0.18
8 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:24617543 original size:16 final size:16
Alignment explanation
Indices: 24617522--24617568 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
24617512 TCTCCCTGCA
24617522 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
* *
24617538 AAATAATAAGAAAAA-
1 AAATAAAAATAAAAAT
* *
24617553 AAATTAAAATTAAAAT
1 AAATAAAAATAAAAAT
24617569 GTGTATTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:24627157 original size:41 final size:40
Alignment explanation
Indices: 24627086--24627183 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 40
24627076 TTTTCAAATA
*
24627086 CAACCTTTCCATTTGTTATCCTATATGGATAACTCCCTTTT
1 CAACCTTT-CATTTGTTATCCTATACGGATAACTCCCTTTT
* * *
24627127 CCACATTTTCATTTGTTATCC-ATTACGGATAACTTCCTTTT
1 CAAC-CTTTCATTTGTTATCCTA-TACGGATAACTCCCTTTT
24627168 CAACCTTTCATTTGTT
1 CAACCTTTCATTTGTT
24627184 CAGACATACC
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 12 0.24
41 34 0.69
42 3 0.06
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.46
Consensus pattern (40 bp):
CAACCTTTCATTTGTTATCCTATACGGATAACTCCCTTTT
Found at i:24629253 original size:29 final size:30
Alignment explanation
Indices: 24629210--24629291 Score: 103
Period size: 29 Copynumber: 2.7 Consensus size: 30
24629200 GAATTGGATC
*
24629210 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
*
24629240 AAATCAAAGTTCATGTATAGAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
24629271 AAACCATAGTTCATGTATAAA
1 AAATCAAAGTTCATGTATAAA
24629292 TCTGGTATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 22 0.49
30 5 0.11
31 18 0.40
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.30
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:24635084 original size:21 final size:21
Alignment explanation
Indices: 24635040--24635089 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
24635030 ACGGTGGTGA
* *
24635040 TGAGATTAGTTACTGTAGCAG
1 TGAGATTAGATACTGTAACAG
* *
24635061 TGAGATTGGATACTGTAACGG
1 TGAGATTAGATACTGTAACAG
*
24635082 TGAAATTA
1 TGAGATTA
24635090 AAAACAATGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (21 bp):
TGAGATTAGATACTGTAACAG
Found at i:24635337 original size:32 final size:31
Alignment explanation
Indices: 24635301--24635362 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
24635291 AATGAATTAT
24635301 ATAATTAATTTAAATTATTTATTAGATAAATG
1 ATAATTAATTTAAATTATTTA-TAGATAAATG
* * * *
24635333 ATAATTATTTTTAATTTTTTATAGTTAAAT
1 ATAATTAATTTAAATTATTTATAGATAAAT
24635363 ATTTTTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 8 0.31
32 18 0.69
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (31 bp):
ATAATTAATTTAAATTATTTATAGATAAATG
Found at i:24639726 original size:9 final size:9
Alignment explanation
Indices: 24639712--24639742 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24639702 GTTAAACAAA
24639712 TCGAGTTAT
1 TCGAGTTAT
*
24639721 TCGAGTTAA
1 TCGAGTTAT
24639730 TCGAGTTAT
1 TCGAGTTAT
24639739 TCGA
1 TCGA
24639743 ATCAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:24639891 original size:21 final size:23
Alignment explanation
Indices: 24639859--24639901 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
24639849 TCCCAAACTC
24639859 CAAAACCTTTTTACT-TTTCCCT
1 CAAAACCTTTTTACTCTTTCCCT
24639881 CAAAA-CTTTTTACTCTTTCCC
1 CAAAACCTTTTTACTCTTTCCC
24639902 ACTTTCCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.44
Consensus pattern (23 bp):
CAAAACCTTTTTACTCTTTCCCT
Found at i:24640771 original size:5 final size:5
Alignment explanation
Indices: 24640761--24640786 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24640751 GAACAAATAT
24640761 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
24640787 ATTTCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:24654905 original size:26 final size:28
Alignment explanation
Indices: 24654851--24654911 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
24654841 TATTATCAAG
* *
24654851 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
24654879 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
24654905 AATTATA
1 AATTATA
24654912 CAAATTCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:24655107 original size:16 final size:16
Alignment explanation
Indices: 24655086--24655127 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
24655076 TTATTAAATT
*
24655086 ATATATTTTAATTATA
1 ATATATTTTAATAATA
24655102 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
24655117 AT-TATGTTTAA
1 ATATAT-TTTAA
24655128 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:24655112 original size:15 final size:15
Alignment explanation
Indices: 24655077--24655118 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
24655067 TTAAGAATTT
*
24655077 TATTAAATTAT-ATA
1 TATTTAATTATAATA
24655091 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
24655105 TATTTAATAATAAT
1 TATTTAATTATAAT
24655119 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:24655375 original size:16 final size:16
Alignment explanation
Indices: 24655351--24655381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24655341 ATTACACAAT
*
24655351 ACACTTCTAATCCAAC
1 ACACCTCTAATCCAAC
24655367 ACACCTCTAATCCAA
1 ACACCTCTAATCCAA
24655382 TACAGCGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (16 bp):
ACACCTCTAATCCAAC
Found at i:24661016 original size:10 final size:10
Alignment explanation
Indices: 24660994--24661092 Score: 55
Period size: 10 Copynumber: 10.2 Consensus size: 10
24660984 GAAGAAATTC
24660994 AAATATTAT-A
1 AAAT-TTATAA
24661004 AAATTTATAA
1 AAATTTATAA
* *
24661014 AAAATTAAAA
1 AAATTTATAA
**
24661024 AAAGATATAA
1 AAATTTATAA
24661034 AAATTGTA-AA
1 AAATT-TATAA
24661044 AAA-TTAT-A
1 AAATTTATAA
* *
24661052 AAATATATAG
1 AAATTTATAA
*
24661062 AAATATA-AA
1 AAATTTATAA
* *
24661071 AAAATTATAG
1 AAATTTATAA
*
24661081 AATTTTATAA
1 AAATTTATAA
24661091 AA
1 AA
24661093 TTGAAAATTA
Statistics
Matches: 67, Mismatches: 16, Indels: 12
0.71 0.17 0.13
Matches are distributed among these distances:
8 6 0.09
9 14 0.21
10 45 0.67
11 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
AAATTTATAA
Found at i:24661032 original size:29 final size:29
Alignment explanation
Indices: 24661000--24661077 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
24660990 ATTCAAATAT
24661000 TATAAAATTTATAAAAAATTAAAAAAAGA
1 TATAAAATTTATAAAAAATTAAAAAAAGA
* * * *
24661029 TATAAAAATTGTAAAAAATT-ATAAAATA
1 TATAAAATTTATAAAAAATTAAAAAAAGA
*
24661057 TATAGAAATATA-AAAAAATTA
1 TATA-AAATTTATAAAAAATTA
24661078 TAGAATTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 18 0.45
29 22 0.55
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (29 bp):
TATAAAATTTATAAAAAATTAAAAAAAGA
Found at i:24661092 original size:19 final size:20
Alignment explanation
Indices: 24660994--24661092 Score: 55
Period size: 19 Copynumber: 5.1 Consensus size: 20
24660984 GAAGAAATTC
24660994 AAATATTATA-AAATTTATAA
1 AAATA-TATAGAAATTTATAA
* * **
24661014 AAA-ATTAAAAAAAGATATAA
1 AAATA-TATAGAAATTTATAA
* * *
24661034 AAAT-TGTAAAAAATTAT-A
1 AAATATATAGAAATTTATAA
* *
24661052 AAATATATAGAAATATAAAA
1 AAATATATAGAAATTTATAA
*
24661072 AAAT-TATAGAATTTTATAA
1 AAATATATAGAAATTTATAA
24661091 AA
1 AA
24661093 TTGAAAATTA
Statistics
Matches: 60, Mismatches: 15, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
18 5 0.08
19 36 0.60
20 19 0.32
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
AAATATATAGAAATTTATAA
Found at i:24661099 original size:28 final size:27
Alignment explanation
Indices: 24660927--24661099 Score: 90
Period size: 28 Copynumber: 6.1 Consensus size: 27
24660917 AAAAGTTAGA
24660927 AAAAAGAATTATAAAA-AT-TAAAATT-
1 AAAAA-AATTATAAAATATATAAAATTG
* *
24660952 AATAAAATT-TATAAATATTATTAAATCTG
1 AAAAAAATTATA-AAATA-TATAAAAT-TG
* *
24660981 AATGAAGAAA-T-TCAAATATTATAAAATTT
1 AA--AA-AAATTATAAAATA-TATAAAATTG
* *
24661010 ATAAAAAATTAAAAAAAGATATAAAAATTG
1 A-AAAAAATT-ATAAAATATAT-AAAATTG
*
24661040 TAAAAAATTATAAAATATATAGAAATAT-
1 AAAAAAATTATAAAATATATA-AAAT-TG
* *
24661068 AAAAAAATTATAGAATTTTATAAAATTG
1 AAAAAAATTATA-AAATATATAAAATTG
24661096 AAAA
1 AAAA
24661100 TTATATATAA
Statistics
Matches: 114, Mismatches: 16, Indels: 33
0.70 0.10 0.20
Matches are distributed among these distances:
23 2 0.02
24 7 0.06
25 5 0.04
26 1 0.01
27 10 0.09
28 36 0.32
29 23 0.20
30 24 0.21
31 3 0.03
32 3 0.03
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAAAAATTATAAAATATATAAAATTG
Found at i:24661518 original size:85 final size:85
Alignment explanation
Indices: 24661410--24661565 Score: 224
Period size: 86 Copynumber: 1.8 Consensus size: 85
24661400 AATTTTTAAT
* ** * *
24661410 AAAAGCAGGAGCTTAGTTGTTTTTTTGAAG-TTTTTGAGGGTCTTTTTGATGTATTTTGAAAGTT
1 AAAAGCAGGAGCTTAATTGTTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGTT
*
24661474 TAAGTGTCCAATTGAGTAAA
66 CAAGTGTCCAATTGAGTAAA
* *
24661494 AAAAGCAGGGGTTTAATTGCTTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGT
1 AAAAGCAGGAGCTTAATTG-TTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGT
24661559 TCAAGTG
65 TCAAGTG
24661566 CTCAATTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 16 0.26
85 11 0.18
86 35 0.56
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (85 bp):
AAAAGCAGGAGCTTAATTGTTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGTT
CAAGTGTCCAATTGAGTAAA
Found at i:24661583 original size:86 final size:84
Alignment explanation
Indices: 24661410--24661585 Score: 210
Period size: 86 Copynumber: 2.0 Consensus size: 84
24661400 AATTTTTAAT
* ** * * *
24661410 AAAAGCAGGAGCTTAGTTGTTTTTTTGAAGTTTTTGAGGGTCTTTTTGATGTATTTTGAAAGTTT
1 AAAAGCAGGAGCTTAATTGTTTTTTTGAAGAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGTTC
* *
24661475 AAGTGTCCAATTGAGTAAA
66 AAGTGTCCAATTAAATAAA
* *
24661494 AAAAGCAGGGGTTTAATTGCTTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGT
1 AAAAGCAGGAGCTTAATTG-TTTTTTTGAAG-AGTTTAAGGGTCTTTTTGATCTATTTTGAAAGT
24661559 TCAAGTG-CTCAATTAAATGCAAA
64 TCAAGTGTC-CAATTAAAT--AAA
24661582 AAAA
1 AAAA
24661586 AAAATGAGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
84 16 0.21
85 12 0.16
86 42 0.55
88 7 0.09
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (84 bp):
AAAAGCAGGAGCTTAATTGTTTTTTTGAAGAGTTTAAGGGTCTTTTTGATCTATTTTGAAAGTTC
AAGTGTCCAATTAAATAAA
Found at i:24667225 original size:45 final size:45
Alignment explanation
Indices: 24667176--24667431 Score: 282
Period size: 45 Copynumber: 5.7 Consensus size: 45
24667166 CTCGCAAAAA
* * *
24667176 AAGATTCATAGATATGGTGAACTCATACATGCGGTTTCATGGTAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
** * * *
24667221 AAGATTCAT-GAATATGGCAAACTCGTATATGCGGATTCAT-GTAG
1 AAGATTCATAG-ATATGGTGAACTCATACATGCGGATTCATAGAAG
** * *
24667265 AAGATTCATAGATATGACGAACTCATACATGTGGATTCATAGCAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
* * *
24667310 AAGATTTATAGATATGGTGGACTCATACATGCGGATTCATAGAAA
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
** * * *
24667355 AAGATTCATAGATATAATGGACTCATACATGCGGAGTCATAAAAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
* * *
24667400 AAGATTCATAAATATGGTGGACTAATACATGC
1 AAGATTCATAGATATGGTGAACTCATACATGC
24667432 AAACTGTGTC
Statistics
Matches: 180, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
44 38 0.21
45 142 0.79
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (45 bp):
AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
Found at i:24667294 original size:89 final size:89
Alignment explanation
Indices: 24667173--24667416 Score: 283
Period size: 89 Copynumber: 2.7 Consensus size: 89
24667163 GAACTCGCAA
* * * *
24667173 AAAAAGATTCATAGATATGGTGAACTCATACATGCGGTTTCATGGTAGAAGATTCATGAATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCAT-AATATGG
* *
24667238 CAAACTCGTATATGCGGATTCAT-G
65 CAAACTCATACATGCGGATTCATAG
* * * * * *
24667262 TAGAAGATTCATAGATATGACGAACTCATACATGTGGATTCATAGCAGAAGATTTATAGATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCATA-ATATGG
***
24667327 TGGACTCATACATGCGGATTCATAG
65 CAAACTCATACATGCGGATTCATAG
* * * *
24667352 AAAAAGATTCATAGATATAATGGACTCATACATGCGGAGTCATAAAAGAAGATTCATAAATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCAT-AATATGG
24667417 TGGACTAATA
Statistics
Matches: 128, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
88 1 0.01
89 72 0.56
90 54 0.42
91 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (89 bp):
AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCATAATATGGC
AAACTCATACATGCGGATTCATAG
Found at i:24673856 original size:23 final size:23
Alignment explanation
Indices: 24673827--24673871 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
24673817 TTGGGCTTCT
24673827 GGGTAGTTTAGGTAATTGGGCTA
1 GGGTAGTTTAGGTAATTGGGCTA
24673850 GGGTAGTTTAGGTAATTGGGCT
1 GGGTAGTTTAGGTAATTGGGCT
24673872 TGTAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.04, G:0.40, T:0.36
Consensus pattern (23 bp):
GGGTAGTTTAGGTAATTGGGCTA
Found at i:24683166 original size:25 final size:25
Alignment explanation
Indices: 24683138--24683197 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
24683128 ATAAGAGAAA
* *
24683138 AAGAAGAATAAGAGAAG-AAATGTAG
1 AAGAAGAAGAAAAGAAGAAAATG-AG
*
24683163 AAGAAAAAGAAAAGAAGAAAATGAG
1 AAGAAGAAGAAAAGAAGAAAATGAG
*
24683188 GAGAAGAAGA
1 AAGAAGAAGA
24683198 GAAAATGGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.28, T:0.07
Consensus pattern (25 bp):
AAGAAGAAGAAAAGAAGAAAATGAG
Found at i:24683181 original size:17 final size:18
Alignment explanation
Indices: 24683122--24683181 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 18
24683112 TTTGGGCAGT
* *
24683122 AGAAGAATAAGAGA-AAA
1 AGAAGAAGAAGAAAGAAA
*
24683139 AGAAGAATAAGAGAAGAAA
1 AGAAGAAGAAGA-AAGAAA
* *
24683158 TGTAGAAGAA-AAAGAAA
1 AGAAGAAGAAGAAAGAAA
24683175 AGAAGAA
1 AGAAGAA
24683182 AATGAGGAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 23 0.66
18 2 0.06
19 10 0.29
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (18 bp):
AGAAGAAGAAGAAAGAAA
Found at i:24683192 original size:39 final size:39
Alignment explanation
Indices: 24683120--24683195 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 39
24683110 AGTTTGGGCA
*
24683120 GTAGAAGAATAAGAGAAAAAGAAGAATAAGAGAAGAAAT
1 GTAGAAGAAAAAGAGAAAAAGAAGAATAAGAGAAGAAAT
*
24683159 GTAGAAGAAAAAGA-AAAGAAGAA-AATGAGGAGAAGAA
1 GTAGAAGAAAAAGAGAAA-AAGAAGAAT-AAGAGAAGAA
24683196 GAGAAAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 6 0.18
39 27 0.82
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (39 bp):
GTAGAAGAAAAAGAGAAAAAGAAGAATAAGAGAAGAAAT
Found at i:24687202 original size:11 final size:11
Alignment explanation
Indices: 24687186--24687210 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24687176 TAGTGACCAT
24687186 AGATGACATGA
1 AGATGACATGA
24687197 AGATGACATGA
1 AGATGACATGA
24687208 AGA
1 AGA
24687211 GAAAGATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.28, T:0.16
Consensus pattern (11 bp):
AGATGACATGA
Found at i:24710265 original size:29 final size:30
Alignment explanation
Indices: 24710233--24710293 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
24710223 AAAACCTTTT
*
24710233 ATTTTT-CCTCAAAATTTTTACTCCC-TCCC
1 ATTTTTCCCT-AAAACTTTTACTCCCTTCCC
*
24710262 ATTTTTCCCTAAAACTTTTATTCCCTTCCC
1 ATTTTTCCCTAAAACTTTTACTCCCTTCCC
24710292 AT
1 AT
24710294 CCCACCTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.46
Consensus pattern (30 bp):
ATTTTTCCCTAAAACTTTTACTCCCTTCCC
Found at i:24718476 original size:9 final size:9
Alignment explanation
Indices: 24718462--24718498 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
24718452 TATAGTTTGA
24718462 TATTCGAAT
1 TATTCGAAT
24718471 TATTCGAAT
1 TATTCGAAT
*
24718480 TATTCGAGT
1 TATTCGAAT
24718489 TATTCGAAT
1 TATTCGAAT
24718498 T
1 T
24718499 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24718568 original size:9 final size:9
Alignment explanation
Indices: 24718551--24718581 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24718541 TCGAGTTGAT
24718551 TCGAATAAC
1 TCGAATAAC
*
24718560 TCGATTAAC
1 TCGAATAAC
24718569 TCGAATAAC
1 TCGAATAAC
24718578 TCGA
1 TCGA
24718582 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:24722219 original size:5 final size:5
Alignment explanation
Indices: 24722209--24722250 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
24722199 GGTAAGTTCA
24722209 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TA
24722251 TTTGTTGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:24722403 original size:45 final size:45
Alignment explanation
Indices: 24722354--24722568 Score: 279
Period size: 45 Copynumber: 4.8 Consensus size: 45
24722344 ATCAAACGGT
* *
24722354 TAAGACAATAGTTGAAAGACACTATGGCACTGTACC-AGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGA-AAATGAA
** * * *
24722399 TAAGACCATAGTTGAAAGACACTACAGAAATATATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* *
24722444 TAAGACCATAGTTGAAAGGCATTATGGCACTATACCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* * * *
24722489 TAAGACCATAGATGAATGACACTATGGCACTACATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* *
24722534 TGAGACCATAGTTGAAAGACACTATGGCATTATAC
1 TAAGACCATAGTTGAAAGACACTATGGCACTATAC
24722569 TTGTAACAGC
Statistics
Matches: 143, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
45 142 0.99
46 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
Found at i:24722460 original size:22 final size:22
Alignment explanation
Indices: 24722392--24722460 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
24722382 ACTGTACCAG
24722392 AAATGAATAAGACCATAGTTG-
1 AAATGAATAAGACCATAGTTGA
*
24722413 AAA-GACACTACAGA-AATA-TATCGA
1 AAATGA-A-TA-AGACCATAGT-T-GA
24722437 AAATGAATAAGACCATAGTTGA
1 AAATGAATAAGACCATAGTTGA
24722459 AA
1 AA
24722461 GGCATTATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 17
0.66 0.04 0.30
Matches are distributed among these distances:
20 2 0.05
21 5 0.14
22 13 0.35
23 10 0.27
24 5 0.14
25 2 0.05
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (22 bp):
AAATGAATAAGACCATAGTTGA
Found at i:24723450 original size:35 final size:35
Alignment explanation
Indices: 24723406--24723485 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
24723396 GGACTAGCTT
*
24723406 TTATAAGCATTGATGTGTTTTGGAGGGATTGGCTC
1 TTATAAGCATTGATGTGTTTCGGAGGGATTGGCTC
* * *
24723441 TTATGAGCATTGGTGTGTTTCGGATGGATTGGCTC
1 TTATAAGCATTGATGTGTTTCGGAGGGATTGGCTC
*
24723476 TTACAAGCAT
1 TTATAAGCAT
24723486 CTCGTGTGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.20, C:0.11, G:0.30, T:0.39
Consensus pattern (35 bp):
TTATAAGCATTGATGTGTTTCGGAGGGATTGGCTC
Found at i:24726586 original size:20 final size:22
Alignment explanation
Indices: 24726534--24726586 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
24726524 TACTAATTTT
*
24726534 GGTATCGATA-CTTCTTTACAA
1 GGTATCGATACCTTATTTACAA
*
24726555 GGGTATCAATACCTTATTTA-AA
1 -GGTATCGATACCTTATTTACAA
24726577 -GTATCGATAC
1 GGTATCGATAC
24726587 ATGTAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.33
22 11 0.41
23 7 0.26
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (22 bp):
GGTATCGATACCTTATTTACAA
Found at i:24731325 original size:18 final size:18
Alignment explanation
Indices: 24731302--24731338 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24731292 GTCACCATTA
24731302 TCATATTTATTATTTTTC
1 TCATATTTATTATTTTTC
24731320 TCATATTTATTATTTTTC
1 TCATATTTATTATTTTTC
24731338 T
1 T
24731339 TACTTCTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.68
Consensus pattern (18 bp):
TCATATTTATTATTTTTC
Found at i:24733033 original size:18 final size:20
Alignment explanation
Indices: 24732998--24733038 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
24732988 ACCATGATTT
24732998 GTTAGATAATGATGTGAT-G
1 GTTAGATAATGATGTGATAG
* *
24733017 GTTAGA-AATGTTTTGATAG
1 GTTAGATAATGATGTGATAG
24733036 GTT
1 GTT
24733039 TATTACTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.41
Consensus pattern (20 bp):
GTTAGATAATGATGTGATAG
Found at i:24748116 original size:4 final size:4
Alignment explanation
Indices: 24748109--24748161 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
24748099 ATGTGATAGA
24748109 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
24748157 TATG T
1 TATG T
24748162 TGAGCATGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:24748341 original size:18 final size:18
Alignment explanation
Indices: 24748301--24748367 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
24748291 TTTCACGATA
*
24748301 AATAACGTTTTGAAAATT
1 AATAACGTTTTGAAAATG
*
24748319 TATAACGTTTTGAAAGA-G
1 AATAACGTTTTGAAA-ATG
* *
24748337 AATAAC-TTATGAATATG
1 AATAACGTTTTGAAAATG
*
24748354 AATCACG-TTTGAAA
1 AATAACGTTTTGAAA
24748368 TTGATCGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
16 1 0.03
17 17 0.45
18 19 0.50
19 1 0.03
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.34
Consensus pattern (18 bp):
AATAACGTTTTGAAAATG
Done.