Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 85 of 207
Found at i:24751199 original size:20 final size:20
Alignment explanation
Indices: 24751174--24751271 Score: 72
Period size: 20 Copynumber: 4.8 Consensus size: 20
24751164 TTGTATAGGA
24751174 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* * *
24751194 TTGCACTTCGATGCCTCTGA
1 TTGCACTTTGGTGCCTCTGT
* *
24751214 TTGCACATTT-GTTCCTCTAT
1 TTGCAC-TTTGGTGCCTCTGT
* * * *
24751234 CTGTACTTCGGTGTCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
24751254 TATGCATCTTTGATGCCT
1 T-TGCA-CTTTGGTGCCT
24751272 TTGGTGCTAT
Statistics
Matches: 55, Mismatches: 19, Indels: 6
0.69 0.24 0.08
Matches are distributed among these distances:
19 2 0.04
20 40 0.73
21 5 0.09
22 8 0.15
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.44
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:24751242 original size:40 final size:40
Alignment explanation
Indices: 24751172--24751271 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 40
24751162 GCTTGTATAG
* *
24751172 GATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTCT
1 GATTGCACTTTGGTGCCTCTATCTGCACTTCGATGCCTCT
* * * *
24751212 GATTGCACATTT-GTTCCTCTATCTGTACTTCGGTGTCTCT
1 GATTGCAC-TTTGGTGCCTCTATCTGCACTTCGATGCCTCT
* *
24751252 GTTATGCATCTTTGATGCCT
1 GAT-TGCA-CTTTGGTGCCT
24751272 TTGGTGCTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
40 32 0.68
41 10 0.21
42 5 0.11
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (40 bp):
GATTGCACTTTGGTGCCTCTATCTGCACTTCGATGCCTCT
Found at i:24751900 original size:20 final size:21
Alignment explanation
Indices: 24751875--24751917 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
24751865 AATTGTCAGG
24751875 TTTAGAAAATTTAATCCT-TT
1 TTTAGAAAATTTAATCCTATT
24751895 TTTAGAAAATTTAATCCTATT
1 TTTAGAAAATTTAATCCTATT
24751916 TT
1 TT
24751918 CATTTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTAGAAAATTTAATCCTATT
Found at i:24753037 original size:26 final size:26
Alignment explanation
Indices: 24753002--24753052 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24752992 TTGATTTTTT
*
24753002 TGTTAATGAAATGAATATTTGAATGC
1 TGTTAATGAAATGAATAATTGAATGC
* *
24753028 TGTTATTGAAATTAATAATTGAATG
1 TGTTAATGAAATGAATAATTGAATG
24753053 GACTAGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (26 bp):
TGTTAATGAAATGAATAATTGAATGC
Found at i:24755686 original size:51 final size:51
Alignment explanation
Indices: 24755625--24755726 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
24755615 ACGTCGGTTG
* *
24755625 ACAATGAGTCACGTTGCGACATCAAGTGGCCTGAGGTCACGACGTGACATA
1 ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
* *
24755676 ACAATAAGTCACGTTACGACATCGAGTGGCCTGAGGTCACGATGTGACATA
1 ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
24755727 CTTTTATGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (51 bp):
ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
Found at i:24758810 original size:20 final size:20
Alignment explanation
Indices: 24758782--24758823 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
24758772 GACTCATTCG
24758782 CATTAATATTTTCATCAAGT
1 CATTAATATTTTCATCAAGT
*
24758802 CATTCATATTTTCATCAAGT
1 CATTAATATTTTCATCAAGT
24758822 CA
1 CA
24758824 AAATATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (20 bp):
CATTAATATTTTCATCAAGT
Found at i:24762461 original size:27 final size:26
Alignment explanation
Indices: 24762431--24762615 Score: 187
Period size: 27 Copynumber: 6.9 Consensus size: 26
24762421 AAAATGACCA
*
24762431 AAATACCCTCGAAGGGTAAAATAACTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
* *
24762458 AAATATCCTCGAATGGTAAAATGATTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
* *
24762485 AAATACCCTCAAAGTGTAAAATGATCG
1 AAATACCCTCGAAGGGTAAAATGAT-G
*
24762512 AAATACACTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
*
24762539 AAATACCCCCGAA-GGTAAAATGATCG
1 AAATACCCTCGAAGGGTAAAATGAT-G
*
24762565 AAATACCC-CTGAAAGGTAAAATGATCG
1 AAATACCCTC-GAAGGGTAAAATGAT-G
* *
24762592 AAATA-CCTCCATTGGGTAAAATGA
1 AAATACCCTCGA-AGGGTAAAATGA
24762616 CTGTTATACC
Statistics
Matches: 135, Mismatches: 16, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.01
26 26 0.19
27 106 0.79
28 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.21
Consensus pattern (26 bp):
AAATACCCTCGAAGGGTAAAATGATG
Found at i:24762589 original size:80 final size:80
Alignment explanation
Indices: 24762420--24762627 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 80
24762410 CGATTCATGA
* * * * * *
24762420 TAAAATGACCAAAATACCCTCGAAGGGTAAAATAACTGAAATATCCTCGAATGGTAAAATGATTG
1 TAAAATGATCGAAATA-CCTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCG
24762485 AAATACCCTCAAAGTG
65 AAATACCCTCAAAGTG
24762501 TAAAATGATCGAAATACACTCGAAGGGTAAAATGACTGAAATACCCCCGAA-GGTAAAATGATCG
1 TAAAATGATCGAAATAC-CTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCG
*
24762565 AAATACCCCTGAAAG-G
65 AAATA-CCCTCAAAGTG
* * **
24762581 TAAAATGATCGAAATACCTCCATTGGGTAAAATGACTGTTATACCCC
1 TAAAATGATCGAAATACCTCGA-AGGGTAAAATGACTGAAATACCCC
24762628 TAGGAGTTGA
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
79 4 0.04
80 57 0.50
81 52 0.46
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (80 bp):
TAAAATGATCGAAATACCTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCGA
AATACCCTCAAAGTG
Found at i:24762835 original size:26 final size:26
Alignment explanation
Indices: 24762806--24762867 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
24762796 TTACTAGCAT
* *
24762806 CTTTTCTGCGTTAATGTTACTGGAAG
1 CTTTTCTGCGTCAATATTACTGGAAG
* *
24762832 CTTTGT-TGCGTCACTATTACTGGCAG
1 CTTT-TCTGCGTCAATATTACTGGAAG
*
24762858 CTTTGCTGCG
1 CTTTTCTGCG
24762868 ATATTGGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.40
Consensus pattern (26 bp):
CTTTTCTGCGTCAATATTACTGGAAG
Found at i:24763012 original size:30 final size:31
Alignment explanation
Indices: 24762972--24763033 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
24762962 TACTGCATTG
* *
24762972 CACTGATTACTGTACTGGGCTAAGGCCCACA
1 CACTGATTACTCTAATGGGCTAAGGCCCACA
24763003 CACTG-TTACTCTAATGGGCTAAGGCCCACA
1 CACTGATTACTCTAATGGGCTAAGGCCCACA
24763033 C
1 C
24763034 TGTACTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.23
Consensus pattern (31 bp):
CACTGATTACTCTAATGGGCTAAGGCCCACA
Found at i:24765321 original size:35 final size:35
Alignment explanation
Indices: 24765226--24765321 Score: 156
Period size: 35 Copynumber: 2.7 Consensus size: 35
24765216 AATTTTTGTA
* * *
24765226 GGCATGCTTTACATGCGAATCAAAACCAGTATAAT
1 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
24765261 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
1 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
*
24765296 GGCATGCTTAACATGCGAATTAGAAT
1 GGCATGCTTAACATGCGAATCAGAAT
24765322 ATCAACAGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (35 bp):
GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
Found at i:24768361 original size:22 final size:22
Alignment explanation
Indices: 24768336--24768378 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24768326 TCAATTATCC
*
24768336 ATAATAATAAACAAATAAAATA
1 ATAATAATAAACAAACAAAATA
* *
24768358 ATAATGATAACCAAACAAAAT
1 ATAATAATAAACAAACAAAAT
24768379 TCGAAACCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.21
Consensus pattern (22 bp):
ATAATAATAAACAAACAAAATA
Found at i:24776297 original size:23 final size:23
Alignment explanation
Indices: 24776265--24776342 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
24776255 TTCTCTTTTC
24776265 TTTTTC-TATATTTGATTCTCTA
1 TTTTTCATATATTTGATTCTCTA
24776287 TTTTTCATATATGTT-ATTCTCT-
1 TTTTTCATATAT-TTGATTCTCTA
* *
24776309 TTCCTTTCCTATATTTGATTATCTA
1 TT--TTTCATATATTTGATTCTCTA
*
24776334 TTTTCCATA
1 TTTTTCATA
24776343 AAATATTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
22 8 0.17
23 19 0.41
24 17 0.37
25 2 0.04
ACGTcount: A:0.19, C:0.17, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTTTCATATATTTGATTCTCTA
Found at i:24776324 original size:47 final size:48
Alignment explanation
Indices: 24776240--24776342 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
24776230 AGAATACATA
* * * *
24776240 TTTCCATATCTGTTATTCTCTTTTCTTTTTCTATATTTGATTCTCTAT
1 TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
*
24776288 TTTTCATATATGTTATTCTC-TTTCCTTTCCTATATTTGATTATCTAT
1 TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
24776335 TTTCCATA
1 TTTCCATA
24776343 AAATATTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 31 0.63
48 18 0.37
ACGTcount: A:0.17, C:0.18, G:0.04, T:0.60
Consensus pattern (48 bp):
TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
Found at i:24776998 original size:18 final size:18
Alignment explanation
Indices: 24776975--24777009 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24776965 ATATTAAAAA
*
24776975 AATTTATATAAATAATAT
1 AATTTATATAAAAAATAT
*
24776993 AATTTATTTAAAAAATA
1 AATTTATATAAAAAATA
24777010 AAATGAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTTATATAAAAAATAT
Found at i:24787895 original size:3 final size:3
Alignment explanation
Indices: 24787887--24787918 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
24787877 GAAAGTGACT
*
24787887 ATC ATC ATC ATC ATC ATC ATC ATC ATC CTC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
24787919 TTGCATCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:24789119 original size:28 final size:27
Alignment explanation
Indices: 24789030--24789120 Score: 83
Period size: 28 Copynumber: 3.3 Consensus size: 27
24789020 AGGGTTGGTG
* **
24789030 AATTTTTTGAAGCAAAGAGAGTTGCTGA
1 AATTTTTTGAAG-AAATAGAGTTAATGA
* ** *
24789058 AATTTTTTGAATGAAATAGGGTTCGTCA
1 AATTTTTTGAA-GAAATAGAGTTAATGA
*
24789086 ATTTTTTTGAACGAAATAGAGTTAATGA
1 AATTTTTTGAA-GAAATAGAGTTAATGA
24789114 AATTTTT
1 AATTTTT
24789121 AAAGGATATT
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 49 0.98
29 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (27 bp):
AATTTTTTGAAGAAATAGAGTTAATGA
Found at i:24791466 original size:21 final size:22
Alignment explanation
Indices: 24791424--24791466 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24791414 TAAACGAAGT
* *
24791424 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
24791446 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
24791467 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:24795338 original size:52 final size:51
Alignment explanation
Indices: 24795243--24795374 Score: 216
Period size: 50 Copynumber: 2.6 Consensus size: 51
24795233 AATATATATA
*
24795243 ATATATA-TGCATGACTTAAATGAAGCTAAA-TGGATATATATGCATTAAT
1 ATATATATTGCATGACTTAAATGAAGCTAAACAGGATATATATGCATTAAT
*
24795292 ATATATATGTGCATGACTTAAATGAAGCTAAACAGTATATATATGCATTAAT
1 ATATATAT-TGCATGACTTAAATGAAGCTAAACAGGATATATATGCATTAAT
24795344 ATATATA-TGCATGACTTAAATGAAGCTAAAC
1 ATATATATTGCATGACTTAAATGAAGCTAAAC
24795375 CTGCTAATAA
Statistics
Matches: 78, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
49 7 0.09
50 24 0.31
51 23 0.29
52 24 0.31
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (51 bp):
ATATATATTGCATGACTTAAATGAAGCTAAACAGGATATATATGCATTAAT
Found at i:24795411 original size:47 final size:48
Alignment explanation
Indices: 24795243--24795431 Score: 183
Period size: 47 Copynumber: 3.9 Consensus size: 48
24795233 AATATATATA
* * *
24795243 ATATATATGCATGACTTAAATGAAGCTAAA--TG-GATATATATGCATTAAT
1 ATATATATGCATGACTTAAATGAAGCTAAACCTGCTA-ATA-AAG-AGT-AT
* * *
24795292 ATATATATGTGCATGACTTAAATGAAGCTAAA-CAG-TATATATATGCATTAAT
1 ATATATA--TGCATGACTTAAATGAAGCTAAACCTGCTA-ATA-AAG-AGT-AT
24795344 ATATATATGCATGACTTAAATGAAGCTAAACCTGCTAATAAAG-GTAT
1 ATATATATGCATGACTTAAATGAAGCTAAACCTGCTAATAAAGAGTAT
*
24795391 ATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAA
1 ATATATATGCATGACTTAAATGAAGCTAAACCTGCTAATAA
24795432 TGGTTAATTT
Statistics
Matches: 129, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
47 42 0.33
48 1 0.01
49 7 0.05
50 25 0.19
51 28 0.22
52 26 0.20
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (48 bp):
ATATATATGCATGACTTAAATGAAGCTAAACCTGCTAATAAAGAGTAT
Found at i:24795722 original size:4 final size:4
Alignment explanation
Indices: 24795713--24795739 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
24795703 AAATTGAAAA
24795713 CACT CACT CACT CACT CACT CACT CAC
1 CACT CACT CACT CACT CACT CACT CAC
24795740 ACGCACAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.52, G:0.00, T:0.22
Consensus pattern (4 bp):
CACT
Found at i:24795813 original size:21 final size:21
Alignment explanation
Indices: 24795787--24795833 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
24795777 ACAACTGATG
24795787 GTGGTTGTGGCCTATGGAACC
1 GTGGTTGTGGCCTATGGAACC
*
24795808 GTGGTTGTGGCCTGTGGAACC
1 GTGGTTGTGGCCTATGGAACC
24795829 GTGGT
1 GTGGT
24795834 CATGGCCTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.11, C:0.17, G:0.43, T:0.30
Consensus pattern (21 bp):
GTGGTTGTGGCCTATGGAACC
Found at i:24795839 original size:21 final size:21
Alignment explanation
Indices: 24795794--24795841 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
24795784 ATGGTGGTTG
**
24795794 TGGCCTATGGAACCGTGGTTG
1 TGGCCTATGGAACCGTGGTCA
*
24795815 TGGCCTGTGGAACCGTGGTCA
1 TGGCCTATGGAACCGTGGTCA
24795836 TGGCCT
1 TGGCCT
24795842 CGTGAGACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.12, C:0.23, G:0.38, T:0.27
Consensus pattern (21 bp):
TGGCCTATGGAACCGTGGTCA
Found at i:24797929 original size:13 final size:14
Alignment explanation
Indices: 24797911--24797951 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
24797901 TTTATAGATA
24797911 CAGATA-ACAGAAT
1 CAGATATACAGAAT
*
24797924 CAGATATGCAGAAT
1 CAGATATACAGAAT
*
24797938 -AGATATACATAAT
1 CAGATATACAGAAT
24797951 C
1 C
24797952 CTACCCCCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.22
Consensus pattern (14 bp):
CAGATATACAGAAT
Found at i:24798343 original size:32 final size:32
Alignment explanation
Indices: 24798292--24798374 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
24798282 TGAGCCCACA
* *
24798292 AGCCCGTGTAGCCCACACGCCCAGA-TTAGCCT
1 AGCCCATGTGGCCCACACGCCCA-ACTTAGCCT
* * *
24798324 TGCCCATTTGGCCCACACGCCCAACTTGGCCT
1 AGCCCATGTGGCCCACACGCCCAACTTAGCCT
*
24798356 AGCCCGTGTGGCCCACACG
1 AGCCCATGTGGCCCACACG
24798375 GCCACACCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 1 0.02
32 41 0.98
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.17
Consensus pattern (32 bp):
AGCCCATGTGGCCCACACGCCCAACTTAGCCT
Found at i:24807145 original size:16 final size:17
Alignment explanation
Indices: 24807109--24807146 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
24807099 ACTAACTTAA
*
24807109 TATTTAATATTTATGAT
1 TATTTAATATATATGAT
*
24807126 TATTTAA-ATATATTAT
1 TATTTAATATATATGAT
24807142 TATTT
1 TATTT
24807147 TATTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TATTTAATATATATGAT
Found at i:24807212 original size:27 final size:27
Alignment explanation
Indices: 24807189--24807244 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
24807179 AATATATTTA
* * *
24807189 TATTTTCATTATATTTTATGATATGTT
1 TATTTTAAATATATTTTATAATATGTT
* *
24807216 TATTTTAAATGTATTTTATAATATATT
1 TATTTTAAATATATTTTATAATATGTT
24807243 TA
1 TA
24807245 AAATAAGTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (27 bp):
TATTTTAAATATATTTTATAATATGTT
Found at i:24808456 original size:21 final size:23
Alignment explanation
Indices: 24808413--24808457 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
24808403 TAAAAAATTT
*
24808413 AAATCATAAAAATTGTATAAATA
1 AAATCATAAAAATTATATAAATA
*
24808436 AAAT-ATAAAAA-TATATTAATA
1 AAATCATAAAAATTATATAAATA
24808457 A
1 A
24808458 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AAATCATAAAAATTATATAAATA
Found at i:24813719 original size:10 final size:10
Alignment explanation
Indices: 24813704--24813729 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24813694 TATACTTTTG
24813704 AATTTTTTAA
1 AATTTTTTAA
24813714 AATTTTTTAA
1 AATTTTTTAA
24813724 AATTTT
1 AATTTT
24813730 AAAAATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:24815421 original size:21 final size:21
Alignment explanation
Indices: 24815395--24815479 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 21
24815385 TGTTATTTTC
*
24815395 TTCTTTTTTTTTCATATCTGA
1 TTCTTTTTTTTTCATATATGA
* *
24815416 TTCTTTATTTTCCATATATGTTA
1 TTCTTTTTTTTTCATATATG--A
*
24815439 TTCTCTTTCCTCTTTT-ATATTTGA
1 TTCT-TTT--T-TTTTCATATATGA
24815463 TTCTTTATTTTTTCATA
1 TTCTTT-TTTTTTCATA
24815480 AAATATTCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
21 21 0.42
22 4 0.08
23 7 0.14
24 8 0.16
26 7 0.14
27 3 0.06
ACGTcount: A:0.16, C:0.15, G:0.04, T:0.65
Consensus pattern (21 bp):
TTCTTTTTTTTTCATATATGA
Found at i:24815597 original size:36 final size:36
Alignment explanation
Indices: 24815550--24815627 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
24815540 ATATTTGACT
*
24815550 TTTCTTCTCTCATCCCTCTATCTTTCTCCCATATCTC
1 TTTC-TCTCTCATCCCTCTATATTTCTCCCATATCTC
* * **
24815587 TTTCTCTCTCATCCTTTTATATTTCTCTTATATCTC
1 TTTCTCTCTCATCCCTCTATATTTCTCCCATATCTC
24815623 TTTCT
1 TTTCT
24815628 TTCTACTCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 32 0.89
37 4 0.11
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (36 bp):
TTTCTCTCTCATCCCTCTATATTTCTCCCATATCTC
Found at i:24829731 original size:15 final size:16
Alignment explanation
Indices: 24829699--24829731 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
24829689 AAATTTGCAC
24829699 TTGGAAGGGTTAAAGG
1 TTGGAAGGGTTAAAGG
24829715 TTGGAAGGGTT-AAGG
1 TTGGAAGGGTTAAAGG
24829730 TT
1 TT
24829732 ATGCCCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.27, C:0.00, G:0.42, T:0.30
Consensus pattern (16 bp):
TTGGAAGGGTTAAAGG
Found at i:24836626 original size:19 final size:20
Alignment explanation
Indices: 24836602--24836641 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
24836592 TAATAATATA
24836602 AATTTTATAT-TTATTTTTC
1 AATTTTATATATTATTTTTC
*
24836621 AATTTTTTATATTATTTTTC
1 AATTTTATATATTATTTTTC
24836641 A
1 A
24836642 TGGTTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
AATTTTATATATTATTTTTC
Found at i:24836656 original size:21 final size:20
Alignment explanation
Indices: 24836604--24836656 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 20
24836594 ATAATATAAA
24836604 TTTTATATTTATTTTTCAATT
1 TTTTA-ATTTATTTTTCAATT
24836625 TTTT-ATATTATTTTTC-ATGGT
1 TTTTAAT-TTATTTTTCAAT--T
24836646 TTTTAATTTAT
1 TTTTAATTTAT
24836657 ACTGATCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 4 0.14
20 9 0.32
21 13 0.46
22 2 0.07
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTAATTTATTTTTCAATT
Found at i:24837509 original size:19 final size:20
Alignment explanation
Indices: 24837485--24837522 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24837475 CGATGTTTTC
24837485 TAAAA-TATATCGATACTTG
1 TAAAATTATATCGATACTTG
24837504 TAAAATTATATCGATACTT
1 TAAAATTATATCGATACTT
24837523 CATCTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (20 bp):
TAAAATTATATCGATACTTG
Found at i:24846896 original size:20 final size:21
Alignment explanation
Indices: 24846873--24846920 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
24846863 CAATTTATTT
* *
24846873 ATACTT-TTTAAAAATTATCG
1 ATACTTGTTTAAAAAGTATCA
24846893 ATACTTGTTTAAAAAGTATCA
1 ATACTTGTTTAAAAAGTATCA
24846914 ATACTTG
1 ATACTTG
24846921 GGGGATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (21 bp):
ATACTTGTTTAAAAAGTATCA
Found at i:24849327 original size:18 final size:19
Alignment explanation
Indices: 24849304--24849340 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24849294 GATACTTATT
24849304 AAATTT-TAACGATACCAA
1 AAATTTATAACGATACCAA
*
24849322 AAATTTATATCGATACCAA
1 AAATTTATAACGATACCAA
24849341 TTTTGCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (19 bp):
AAATTTATAACGATACCAA
Found at i:24853002 original size:149 final size:148
Alignment explanation
Indices: 24852731--24853210 Score: 514
Period size: 149 Copynumber: 3.2 Consensus size: 148
24852721 ATCGCCATAC
* * * * * *
24852731 GGTGTTACTGAGTGCAAACCATGATGTACGAAGCTTCGAGCCTTGCAAAGGGGACACTATGGTGT
1 GGTGTTGCTGAGTGCAAACCGTGATGTGCGAAGCTTAG-GCCTTGCAGAGGGGACACTACGGTGT
* ** * * *
24852796 TCGAGCATTAATATTAGAAATGGAAAAATAGAGGAATGAACGGATGGATAGGGAAATGAAATTTC
65 TCGAGCATCAAGGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGATAGGGAAATGAAATTTC
*
24852861 CATTAAGATTCTGATATCA
130 CATTAAGATTCTGAAATCA
* * ** *
24852880 TGTGTTGCTGAGTGCAAATCGTGATGTGCGAAGCTCTAGGCCTTGTTGAGGGTACACTACGGTGT
1 GGTGTTGCTGAGTGCAAACCGTGATGTGCGAAGCT-TAGGCCTTGCAGAGGGGACACTACGGTGT
* ** * *
24852945 TCGAGCATCAAGGTTAGAAATGGTGAAATGGAGGAATGGGCTGATGGATAGGGAAATGAGATTTC
65 TCGAGCATCAAGGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGATAGGGAAATGAAATTTC
* **
24853010 TATTAAGATTCCAAAATCA
130 CATTAAGATTCTGAAATCA
* * * * *
24853029 GGTGTTGTTGAGTGCAAACCGTGATGTGTGAAGCTTCGGGCCTTACGGAGGGGACAC--CGTAGT
1 GGTGTTGCTGAGTGCAAACCGTGATGTGCGAAGCTT-AGGCCTTGCAGAGGGGACACTACG--GT
* * **
24853092 GTTCAAGCATCAAGGTTAGAAATGGAGAAATGGAAGAATGTCCAGATGGATAGGGAAATGAAATT
63 GTTCGAGCATCAAGGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGATAGGGAAATGAAATT
* *
24853157 TCCGTTAAGATTCTGCAATCA
128 TCCATTAAGATTCTGAAATCA
** * * * *
24853178 AATGTTGCTTAGTACAAACCATGATATGCGAAG
1 GGTGTTGCTGAGTGCAAACCGTGATGTGCGAAG
24853211 GGGACATTAC
Statistics
Matches: 273, Mismatches: 54, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
147 2 0.01
148 1 0.00
149 268 0.98
150 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (148 bp):
GGTGTTGCTGAGTGCAAACCGTGATGTGCGAAGCTTAGGCCTTGCAGAGGGGACACTACGGTGTT
CGAGCATCAAGGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGATAGGGAAATGAAATTTCC
ATTAAGATTCTGAAATCA
Found at i:24853491 original size:67 final size:67
Alignment explanation
Indices: 24853368--24853496 Score: 165
Period size: 67 Copynumber: 1.9 Consensus size: 67
24853358 GATATTTAAG
* *
24853368 GTGTAAGACCATAGCTCAACTATGGCAACCAATGGAGTCTGCCAGGACATGGAACATGGGGTTAC
1 GTGTAAGACCATAGCTCAACTATGGCAACCAATGGAGTCTGCCAGGAAATGAAACATGGGGTTAC
24853433 AT
66 AT
* **
24853435 GTGTAAGACCATAGCTCAGCTATGGCAA-C-ATAGAGAGTCTGCTGGGAAA-GTAAACATGGGGT
1 GTGTAAGACCATAGCTCAACTATGGCAACCAAT-G-GAGTCTGCCAGGAAATG-AAACATGGGGT
24853497 AGTCTACCAG
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
65 2 0.04
66 3 0.06
67 49 0.91
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.21
Consensus pattern (67 bp):
GTGTAAGACCATAGCTCAACTATGGCAACCAATGGAGTCTGCCAGGAAATGAAACATGGGGTTAC
AT
Found at i:24854865 original size:17 final size:17
Alignment explanation
Indices: 24854826--24854871 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
24854816 CTTCCCCCTA
24854826 TTTACTTTCCCTC-AAACT
1 TTTA-TTTCCC-CAAAACT
24854844 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAAC-T
24854861 TTTATTTCCCC
1 TTTATTTCCCC
24854872 CCTAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.04
16 9 0.36
17 5 0.20
18 10 0.40
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTATTTCCCCAAAACT
Found at i:24855229 original size:36 final size:36
Alignment explanation
Indices: 24855189--24855260 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
24855179 CAAAATACAT
24855189 AGTGACAAGAATCTGAAGATAATTGCAA-CAACTAAG
1 AGTGACAAGAATCTGAAGATAATTG-AATCAACTAAG
* *
24855225 AGTGACAAGAATCTGACGATGATTGAATCAACTAAG
1 AGTGACAAGAATCTGAAGATAATTGAATCAACTAAG
24855261 CAAGCAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 2 0.06
36 31 0.94
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (36 bp):
AGTGACAAGAATCTGAAGATAATTGAATCAACTAAG
Found at i:24860902 original size:23 final size:23
Alignment explanation
Indices: 24860840--24860903 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
24860830 TTTTATATGC
* *
24860840 GCAAGTGATAGTGGCACTATAGT
1 GCAAGTGATAGTGGCATTACAGT
24860863 GCAAGTG-TCAGTGGCATTACAGT
1 GCAAGTGAT-AGTGGCATTACAGT
*
24860886 GCAAGTGATAGCGGCATT
1 GCAAGTGATAGTGGCATT
24860904 TAGGTGCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 1 0.03
23 34 0.94
24 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (23 bp):
GCAAGTGATAGTGGCATTACAGT
Found at i:24860910 original size:23 final size:22
Alignment explanation
Indices: 24860840--24860912 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
24860830 TTTTATATGC
*
24860840 GCAAGTGATAGTGGCACTATAGT
1 GCAAGTGATAGTGGCA-TTTAGT
*
24860863 GCAAGTG-TCAGTGGCATTACAGT
1 GCAAGTGAT-AGTGGCATT-TAGT
*
24860886 GCAAGTGATAGCGGCATTTAGGT
1 GCAAGTGATAGTGGCATTTA-GT
24860909 GCAA
1 GCAA
24860913 ATTATTGACT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 3 0.07
23 38 0.90
24 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (22 bp):
GCAAGTGATAGTGGCATTTAGT
Found at i:24865907 original size:17 final size:17
Alignment explanation
Indices: 24865885--24865931 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
24865875 ATATGGCCTA
24865885 CCACACGATCGTGTGAC
1 CCACACGATCGTGTGAC
24865902 CCACACGA-C-T-T-A-
1 CCACACGATCGTGTGAC
24865914 CCACACGATCGTGTGAC
1 CCACACGATCGTGTGAC
24865931 C
1 C
24865932 TATACGAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
12 8 0.32
13 2 0.08
14 2 0.08
15 2 0.08
16 2 0.08
17 9 0.36
ACGTcount: A:0.26, C:0.38, G:0.19, T:0.17
Consensus pattern (17 bp):
CCACACGATCGTGTGAC
Found at i:24880605 original size:37 final size:37
Alignment explanation
Indices: 24880540--24880648 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
24880530 TACGTATGAT
* *
24880540 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
24880575 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
24880612 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
24880649 TAAAGCTATC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 56 0.81
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:24880691 original size:52 final size:52
Alignment explanation
Indices: 24880612--24880880 Score: 322
Period size: 52 Copynumber: 5.2 Consensus size: 52
24880602 TAAGTGTAGC
* * *
24880612 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
*
24880665 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-CTAAAGCTATCACTTAT
* *
24880717 CAC---T---TTGTCTCTTGATCAGATAAGTATAGC-AGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTA-AAGCTATCACTTAT
* **
24880763 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
* * *
24880815 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTATCACCTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTAT
24880867 CACTTTGTCACTTG
1 CACTTT-TCACTTG
24880881 ATCAGAAGTA
Statistics
Matches: 191, Mismatches: 13, Indels: 24
0.84 0.06 0.11
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 37 0.19
49 1 0.01
52 130 0.68
53 19 0.10
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
Found at i:24880722 original size:98 final size:98
Alignment explanation
Indices: 24880612--24880880 Score: 380
Period size: 98 Copynumber: 2.7 Consensus size: 98
24880602 TAAGTGTAGC
*
24880612 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTTCACTTTTCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
24880677 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
24880710 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC-AGAAGCTATCACTTATCACTTTCCACT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTA-AAGCTATCACTTATCACTTTTCACT
*
24880774 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
65 TGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* * *
24880808 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTATCACCTATCACTT
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTATCACTT
24880872 TGTCACTTG
59 T-TCACTTG
24880881 ATCAGAAGTA
Statistics
Matches: 152, Mismatches: 9, Indels: 13
0.87 0.05 0.07
Matches are distributed among these distances:
97 1 0.01
98 102 0.67
100 1 0.01
104 42 0.28
105 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:24888333 original size:23 final size:23
Alignment explanation
Indices: 24888307--24888379 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
24888297 TCGAAAATGA
*
24888307 CCACGTAGCATATTGTGGACAAG
1 CCACATAGCATATTGTGGACAAG
* * *
24888330 CCACCATA-CA-AATGTCGAAAACGG
1 CCA-CATAGCATATTGTGGACAA--G
24888354 CCACATAGCATATTGTGGACAAG
1 CCACATAGCATATTGTGGACAAG
24888377 CCA
1 CCA
24888380 GCACATAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
22 8 0.21
23 13 0.34
24 9 0.24
25 8 0.21
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (23 bp):
CCACATAGCATATTGTGGACAAG
Found at i:24888343 original size:47 final size:47
Alignment explanation
Indices: 24888272--24888384 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
24888262 AACACACTAT
* * * * *
24888272 TTGTGGACAAGCTACTACATAAATGTCGAAAATGACCACGTAGCATA
1 TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
* *
24888319 TTGTGGACAAGCCACCATACAAATGTCGAAAACGGCCACATAGCATA
1 TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
*
24888366 TTGTGGACAAGCCAGCACA
1 TTGTGGACAAGCCACCACA
24888385 TAATTGCAGA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
Found at i:24888406 original size:22 final size:22
Alignment explanation
Indices: 24888381--24888430 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
24888371 GACAAGCCAG
24888381 CACATAATTGCAGATAAACTGC
1 CACATAATTGCAGATAAACTGC
24888403 CACATAATTGCAGATAAACTGC
1 CACATAATTGCAGATAAACTGC
24888425 CACATA
1 CACATA
24888431 TCTTCCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.22
Consensus pattern (22 bp):
CACATAATTGCAGATAAACTGC
Found at i:24894176 original size:21 final size:19
Alignment explanation
Indices: 24894152--24894196 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
24894142 AGAGCAATAC
* *
24894152 TAACTTGTTTTAAAATAGTTT
1 TAACTTGATTGAAAAT-G-TT
24894173 TAACTTGATTGAAAATGTT
1 TAACTTGATTGAAAATGTT
24894192 TAACT
1 TAACT
24894197 CAATTGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 1 0.05
21 14 0.64
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.47
Consensus pattern (19 bp):
TAACTTGATTGAAAATGTT
Found at i:24904095 original size:88 final size:88
Alignment explanation
Indices: 24903946--24904125 Score: 324
Period size: 88 Copynumber: 2.0 Consensus size: 88
24903936 CACGGAACTA
24903946 ACTAAAAATTTAACTAAGGTAAGTATACCTAATAATTGATAGTATAGTTATTGTGAGCAAAGATA
1 ACTAAAAATTTAACTAAGGTAAGTATACCTAATAATTGATAGTATAGTTATTGTGAGCAAAGATA
* *
24904011 TTGTTCTCACGGAGACTAAAAGT
66 TCGTTCTCACGAAGACTAAAAGT
*
24904034 ACTAAAAATTTAACTAAGGTAAGTTTACCTAATAATTGATAGTATAGTTATTGTGAGCAAAGATA
1 ACTAAAAATTTAACTAAGGTAAGTATACCTAATAATTGATAGTATAGTTATTGTGAGCAAAGATA
*
24904099 TCGTTCTCATGAAGACTAAAAGT
66 TCGTTCTCACGAAGACTAAAAGT
24904122 ACTA
1 ACTA
24904126 GTAATTGTAA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (88 bp):
ACTAAAAATTTAACTAAGGTAAGTATACCTAATAATTGATAGTATAGTTATTGTGAGCAAAGATA
TCGTTCTCACGAAGACTAAAAGT
Found at i:24908527 original size:287 final size:287
Alignment explanation
Indices: 24908011--24908584 Score: 1085
Period size: 287 Copynumber: 2.0 Consensus size: 287
24908001 ATTAACAATT
24908011 AACATTGAATAATCATCCAAAAATGCATTAAGAATAATGTTAAAACATGCTACTTTTAGCACTTA
1 AACATTGAATAATCATCCAAAAATGCATTAAGAATAATGTTAAAACATGCTACTTTTAGCACTTA
*
24908076 TCAAATATCCCCACACTTAAGCGTTTGATTGTTCTTAAGTAAAATTCTCAACCCACATTCAAGTT
66 TCAAATATCCCCACACTTAAGCGTTTGATTGTTCTCAAGTAAAATTCTCAACCCACATTCAAGTT
24908141 AACCTCCCACAATTTATCGTTTTCGTCGACAATGTATTAGGATAATCTATAGATAATCATTCATT
131 AACCTCCCACAATTTATCGTTTTCGTCGACAATGTATTAGGATAATCTATAGATAATCATTCATT
* *
24908206 GGAAATTCACACTAAGATGACATTAAACAGTACAAGCAATCCAACCAGAGATTTTTAAGGCTTAA
196 GGAAATTCACACTAAGATAACACTAAACAGTACAAGCAATCCAACCAGAGATTTTTAAGGCTTAA
*
24908271 AAACATTAGGCATCTCCTCTATCTCAA
261 AAACATTAGGCATCTCCCCTATCTCAA
*
24908298 AACATTGAATAATCATCCAAAAATTCATTAAGAATAATGTTAAAACATGCTACTTTTAGCACTTA
1 AACATTGAATAATCATCCAAAAATGCATTAAGAATAATGTTAAAACATGCTACTTTTAGCACTTA
24908363 TCAAATATCCCCACACTTAAGCGTTTGATTGTTCTCAAGTAAAATTCTCAACCCACATTCAAGTT
66 TCAAATATCCCCACACTTAAGCGTTTGATTGTTCTCAAGTAAAATTCTCAACCCACATTCAAGTT
24908428 AACCTCCCACAATTTATCGTTTTCGTCGACAATGTATTAGGATAATCTATAGATAATCATTCATT
131 AACCTCCCACAATTTATCGTTTTCGTCGACAATGTATTAGGATAATCTATAGATAATCATTCATT
* *
24908493 GGAAATTCACACTAAGATAACACTAAACAGTACAAGCAATCTAAGCAGAGATTTTTAAGGCTTAA
196 GGAAATTCACACTAAGATAACACTAAACAGTACAAGCAATCCAACCAGAGATTTTTAAGGCTTAA
24908558 AAACATTAGGCATCTCCCCTATCTCAA
261 AAACATTAGGCATCTCCCCTATCTCAA
24908585 TAATTACCTA
Statistics
Matches: 280, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 280 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (287 bp):
AACATTGAATAATCATCCAAAAATGCATTAAGAATAATGTTAAAACATGCTACTTTTAGCACTTA
TCAAATATCCCCACACTTAAGCGTTTGATTGTTCTCAAGTAAAATTCTCAACCCACATTCAAGTT
AACCTCCCACAATTTATCGTTTTCGTCGACAATGTATTAGGATAATCTATAGATAATCATTCATT
GGAAATTCACACTAAGATAACACTAAACAGTACAAGCAATCCAACCAGAGATTTTTAAGGCTTAA
AAACATTAGGCATCTCCCCTATCTCAA
Found at i:24911417 original size:14 final size:14
Alignment explanation
Indices: 24911400--24911434 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
24911390 ATAAAATATA
*
24911400 AATTTATATTTAAT
1 AATTCATATTTAAT
*
24911414 AATTCATTTTTAAT
1 AATTCATATTTAAT
24911428 AATTCAT
1 AATTCAT
24911435 TAATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (14 bp):
AATTCATATTTAAT
Found at i:24911435 original size:14 final size:14
Alignment explanation
Indices: 24911408--24911435 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24911398 TAAATTTATA
24911408 TTTAATAATTCATT
1 TTTAATAATTCATT
24911422 TTTAATAATTCATT
1 TTTAATAATTCATT
24911436 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:24911905 original size:19 final size:19
Alignment explanation
Indices: 24911883--24911920 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24911873 TCAATCATCT
24911883 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
24911902 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
24911921 ACACTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:24918061 original size:3 final size:3
Alignment explanation
Indices: 24918055--24918087 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
24918045 CAACAATAGT
24918055 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24918088 GTAAAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24918709 original size:34 final size:34
Alignment explanation
Indices: 24918637--24918713 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
24918627 TGTTTTTGTT
***
24918637 TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTCTT
1 TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTAAA
* *
24918671 TTTGTTTTTTCTTTCTTTCTTTTTGTTGT-TTAAA
1 TTTGTTTTTTCTTTCTTTCTTTCTCTT-TATTAAA
24918705 TTTGTTTTT
1 TTTGTTTTT
24918714 GGTTTTCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.05, C:0.12, G:0.06, T:0.77
Consensus pattern (34 bp):
TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTAAA
Found at i:24919215 original size:31 final size:31
Alignment explanation
Indices: 24919143--24919216 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
24919133 AGCAACTTGG
** ***
24919143 GTAGGCCGTGTGGGGCACATGGGCTGGTTAA
1 GTAGGCCGTGTGGACCACATGGGCTGCCCAA
*
24919174 GTAGGTCGTGTGGACCACATGGGCTGCCCAA
1 GTAGGCCGTGTGGACCACATGGGCTGCCCAA
*
24919205 TTAGGCCGTGTG
1 GTAGGCCGTGTG
24919217 AGCCCATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.16, C:0.20, G:0.41, T:0.23
Consensus pattern (31 bp):
GTAGGCCGTGTGGACCACATGGGCTGCCCAA
Found at i:24919798 original size:34 final size:34
Alignment explanation
Indices: 24919758--24919825 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
24919748 TTTGGTATGA
* * *
24919758 TTGGTTGGACAGAGTTGGTATGTAGCGGATGGGG
1 TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
*
24919792 TTGGTTGAACAGAGTTGATGTGTAGCAGATGGGG
1 TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
24919826 GTAGAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.21, C:0.06, G:0.44, T:0.29
Consensus pattern (34 bp):
TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
Found at i:24922791 original size:31 final size:31
Alignment explanation
Indices: 24922734--24922792 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
24922724 TGGCAACTTG
* * **
24922734 GGTAGGTCGTGTGGGGCACATGGGCTGGTTA
1 GGTAAGTCGTGTGGGCCACACAGGCTGGTTA
24922765 GGTAAGTCGTGTGGGCCACACAGGCTGG
1 GGTAAGTCGTGTGGGCCACACAGGCTGG
24922793 CCAATTAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.46, T:0.22
Consensus pattern (31 bp):
GGTAAGTCGTGTGGGCCACACAGGCTGGTTA
Found at i:24927849 original size:27 final size:29
Alignment explanation
Indices: 24927805--24927858 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
24927795 AATAAGAGAA
*
24927805 ATATTTATAATAACTAAAAAAACGTATAT
1 ATATGTATAATAACTAAAAAAACGTATAT
*
24927834 ATATGTATAAT-A-TAAAAAAATGTAT
1 ATATGTATAATAACTAAAAAAACGTAT
24927859 TTTGAATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 12 0.52
28 1 0.04
29 10 0.43
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (29 bp):
ATATGTATAATAACTAAAAAAACGTATAT
Found at i:24929852 original size:50 final size:50
Alignment explanation
Indices: 24929790--24930248 Score: 248
Period size: 50 Copynumber: 9.2 Consensus size: 50
24929780 GATCTAAAAT
* ** * *
24929790 CTTCAATTTGTTCAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAA
1 CTTCAATCTGTTCAACTGCAATGTCAAGGAAACAAGATCCGCCGTCGTAG
* * * ** * *
24929840 CTTCAATCTGTTCCACCGCACTG-CTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGTC-AAGGAAACAAGATCCGCCGTCGTAG
* * * * * * * * *
24929890 CTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCTGCCATCGTAG
1 CTTCAATCTGTTCAACTGCAATGTCAAGGAAACAAGATCCGCCGTCGTAG
** * ** * *
24929940 CTTCAATCTGTTCCGCTGCACTG-CTAAGGAATTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGTC-AAGGAAACAAGATCCGCCGTCGTAG
* * * * * * * *
24929990 CTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATTCGCCGTCGTAG
1 CTTCAATCTGTTCAACTGCAATGTCAAGGAAACAAGATCCGCCGTCGTAG
** * * *
24930040 CTTCAATCTGTTCCGCTGCACT-ACTAA-GAAAGTAAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAACTGCAATGTC-AAGGAAA-CAAGATCCGCCGTCGTAG
** * * ** * *
24930090 CTTCAATCTGTTCCGCTACACTG-CTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGTC-AAGGAAACAAGATCCGCCGTCGTAG
* * * * * * *
24930140 CTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAACTGCAATGTCAAGGAAACAAGATCCGCCGTCGTAG
* * ** * *
24930190 CTTCAATCTGTTTC-GCTGCACTG-CTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTG-TTCAACTGCAATGTC-AAGGAAACAAGATCCGCCGTCGTAG
24930240 CTTCAATCT
1 CTTCAATCT
24930249 TTTTACTTTT
Statistics
Matches: 295, Mismatches: 103, Indels: 22
0.70 0.25 0.05
Matches are distributed among these distances:
49 8 0.03
50 279 0.95
51 8 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (50 bp):
CTTCAATCTGTTCAACTGCAATGTCAAGGAAACAAGATCCGCCGTCGTAG
Found at i:24929926 original size:100 final size:100
Alignment explanation
Indices: 24929816--24930098 Score: 467
Period size: 100 Copynumber: 2.8 Consensus size: 100
24929806 TGCAATGTCG
* * *
24929816 GGGAAACCAGATCCGCCGTCGTAACTTCAATCTGTTCCACCGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
24929881 CCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
* * *
24929916 GGGAAACCAGATCTGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAATTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
24929981 CCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
* * *
24930016 GGGAAACCAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTACTAAGAAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
* *
24930081 CCGTCGTAGCTTCAATCT
66 CCGTTGTGGCTTCAATCT
24930099 GTTCCGCTAC
Statistics
Matches: 169, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 169 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
Found at i:24930043 original size:150 final size:150
Alignment explanation
Indices: 24929924--24930248 Score: 499
Period size: 150 Copynumber: 2.2 Consensus size: 150
24929914 CAGGGAAACC
* * *
24929924 AGATCTGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAATTAAGATCCGCCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
* *
24929989 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATTCGCCGTCGTAGCTTCAATCTGTTCC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCA
* *
24930054 GCTGCACTACTAAGAAAGTA
131 ACTGCACTACTAAGAAAGCA
*
24930074 AGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
24930139 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTTC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTG-TTC
* * * *
24930204 -GCTGCACTGCTAAGGAAGTA
130 AACTGCACTACTAAGAAAGCA
* * *
24930224 AGATCCGCCGTTGTGGCTTCAATCT
1 AGATCCGCCATCGTAGCTTCAATCT
24930249 TTTTACTTTT
Statistics
Matches: 165, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
150 162 0.98
151 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.30
Consensus pattern (150 bp):
AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCA
ACTGCACTACTAAGAAAGCA
Found at i:24930133 original size:100 final size:99
Alignment explanation
Indices: 24929817--24930248 Score: 320
Period size: 100 Copynumber: 4.3 Consensus size: 99
24929807 GCAATGTCGG
* * * * *
24929817 GGAAACCAGATCCGCCGTCGTAACTTCAATCTGTTCCACCGCACTGCTAAGGAAGTAAGATCCGC
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGAAAGTAAGATCCGC
* * * * * *
24929882 CGTTGTGGCTTCAATCTTTTTAATTGCTATATCAG
66 CGTCGTAGCTTCAATCTTGTT-ATCGCTACATCAA
* * * * * * *
24929917 GGAAACCAGATCTGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAATTAAGATCCGC
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGAAAGTAAGATCCGC
* * * * * *
24929982 CGTTGTGGCTTCAATCTTTTTAATTGCTATATCAG
66 CGTCGTAGCTTCAATCTTGTT-ATCGCTACATCAA
* * *
24930017 GGAAACCAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTACTAAGAAAGTAAGATCCGC
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGAAAGTAAGATCCGC
*
24930082 CGTCGTAGCTTCAATC-TGTT-CCGCTACACTGCTAA
66 CGTCGTAGCTTCAATCTTGTTATCGCTACA-T-C-AA
** * * * ** * * **
24930117 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCTA-TA-TCAGGGAAA-CCAGATC
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGC-ACTACT-A-AGAAAGTAAGATC
*
24930179 CGCCGTCGTAGCTTCAATC-TGTT-TCGCTGCACTGCTAA
63 CGCCGTCGTAGCTTCAATCTTGTTATCGCTACA-T-C-AA
** * *
24930217 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCT
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCT
24930249 TTTTACTTTT
Statistics
Matches: 291, Mismatches: 35, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
97 5 0.02
98 1 0.00
99 5 0.02
100 275 0.95
101 5 0.02
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (99 bp):
GGAAACAAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGAAAGTAAGATCCGC
CGTCGTAGCTTCAATCTTGTTATCGCTACATCAA
Found at i:24930249 original size:100 final size:100
Alignment explanation
Indices: 24930074--24930253 Score: 342
Period size: 100 Copynumber: 1.8 Consensus size: 100
24930064 TAAGAAAGTA
24930074 AGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
24930139 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
* *
24930174 AGATCCGCCGTCGTAGCTTCAATCTGTTTCGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
24930239 GCTTCAATCTTTTTA
66 GCTTCAATCTTTTTA
24930254 CTTTTCAACC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (100 bp):
AGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
Found at i:24939943 original size:40 final size:40
Alignment explanation
Indices: 24939899--24940084 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
24939889 GCTCCTCGTT
*
24939899 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
* *
24939939 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
24939979 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
24940019 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
24940060 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24940085 CATCATTCAA
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 4 0.03
40 111 0.86
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:24947804 original size:40 final size:40
Alignment explanation
Indices: 24947760--24947945 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
24947750 GCTCCTCGTT
*
24947760 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
* *
24947800 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
24947840 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
24947880 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
24947921 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24947946 CATCATTCAA
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 4 0.03
40 111 0.86
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:24962889 original size:64 final size:64
Alignment explanation
Indices: 24962779--24962942 Score: 283
Period size: 64 Copynumber: 2.6 Consensus size: 64
24962769 CTTGAAGGAA
* *
24962779 AGAGACCAAAGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
*
24962843 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATGG
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
* *
24962907 AGAGGCTAAGGTGAAAACCCGCAAAGGGCGCCTTGA
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGA
24962943 GACCAAAGGG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 95 1.00
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (64 bp):
AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
Found at i:24964347 original size:46 final size:44
Alignment explanation
Indices: 24964274--24964519 Score: 139
Period size: 46 Copynumber: 5.6 Consensus size: 44
24964264 AGTAGATCGC
* *
24964274 ATCAGGTCTTATCTCCTTGAGATTACAGTGGAATAGACCGAAGA
1 ATCAGATCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
* ** **
24964318 ATTACAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-
1 A-T-CAGATCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
* * * * ** **
24964363 -CCAGTAATCCTATTTCCTTGAGATTACAGTGGAACGGA-TTAA-A
1 ATCAG--ATCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
* * * * * * *
24964406 ATAAAGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATC---GC
1 AT-CA-GATCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGA
*
24964449 ATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
1 ATCAGATCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
*
24964493 ATTTCAGATCTTATCTCCTTGAGATTA
1 A--TCAGATCTTATCTCCCTGAGATTA
24964520 TAGCGGAGCA
Statistics
Matches: 147, Mismatches: 38, Indels: 32
0.68 0.18 0.15
Matches are distributed among these distances:
41 26 0.18
42 6 0.04
43 7 0.05
44 49 0.33
45 2 0.01
46 57 0.39
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCAGATCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
Found at i:24964440 original size:175 final size:175
Alignment explanation
Indices: 24964149--24964684 Score: 896
Period size: 175 Copynumber: 3.1 Consensus size: 175
24964139 GAAGATGGCG
* *
24964149 GATCTTATCTCCCTAAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
24964214 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* *
24964279 GTCTTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTACA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
*
24964324 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
24964389 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
24964454 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
* * * * *
24964499 GATCTTATCTCCTTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
24964564 CAGTAGAGCAGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGTAGATCGTATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
*
24964627 GTCTTATCTCCCTGAGGTTACAGTGGAATAGACCGAAGAATTTCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
*
24964672 GACCTTATCTCCC
1 GATCTTATCTCCC
24964685 AGATAATGTA
Statistics
Matches: 340, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
173 86 0.25
175 254 0.75
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (175 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
Found at i:24964777 original size:50 final size:50
Alignment explanation
Indices: 24964701--24964840 Score: 167
Period size: 50 Copynumber: 2.8 Consensus size: 50
24964691 TGTACTGGAG
* * *
24964701 CAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTCAAGA
1 CAGATTAAAGCTACAACGGCGAATCTTGCTTTCCCGACATTGCAG-CAAAA
* * * *
24964752 -AGATTAAAGCTACAACAGCGAATCTTAC-TTCCCAGATAATGCAGCAAAA
1 CAGATTAAAGCTACAACGGCGAATCTTGCTTTCCC-GACATTGCAGCAAAA
* *
24964801 CAGATTAAAGCTATAATGGCGAATCTTGCTTTCCCGACAT
1 CAGATTAAAGCTACAACGGCGAATCTTGCTTTCCCGACAT
24964841 CACAATTACG
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
49 9 0.12
50 59 0.81
51 5 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (50 bp):
CAGATTAAAGCTACAACGGCGAATCTTGCTTTCCCGACATTGCAGCAAAA
Found at i:24965114 original size:13 final size:13
Alignment explanation
Indices: 24965098--24965132 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
24965088 TAAAACCCAA
*
24965098 ATATAAAATATAT
1 ATATAAAATAAAT
24965111 ATATAAAATAAAT
1 ATATAAAATAAAT
24965124 ATAATAAAA
1 AT-ATAAAA
24965133 GTTCAATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAATAAAT
Found at i:24968619 original size:55 final size:55
Alignment explanation
Indices: 24968488--24968628 Score: 167
Period size: 55 Copynumber: 2.6 Consensus size: 55
24968478 ATTTAGATTG
* * * * *
24968488 AATCGATTGTTATGTTGAAATATTACTTCTTTTAAATCGATTGTTTTTATGTTTA
1 AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
* * * * *
24968543 AATTGATTGTCATGTTAGAATACTGCTTCTTCTGAATCGATTGTATATATGTTTA
1 AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
*
24968598 AATCGATTGTTATAG-TGGAATACTATTTCTT
1 AATCGATTGTTAT-GTTGGAATACTACTTCTT
24968629 ATTCTTTTGA
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
55 69 0.99
56 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (55 bp):
AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
Found at i:24972056 original size:29 final size:31
Alignment explanation
Indices: 24972015--24972091 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 31
24972005 CATTGAAGCC
* *
24972015 AAACTCAAGTATCAAATT-GAGATTAAAA-A
1 AAACTCAAATATCAAATTAAAGATTAAAACA
* * * *
24972044 AAACTTAAATATCCAATTAAATATTAAAACC
1 AAACTCAAATATCAAATTAAAGATTAAAACA
24972075 AAACTCAAATATCAAAT
1 AAACTCAAATATCAAAT
24972092 ACTGCATTAG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 15 0.39
30 8 0.21
31 15 0.39
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (31 bp):
AAACTCAAATATCAAATTAAAGATTAAAACA
Found at i:24975663 original size:31 final size:30
Alignment explanation
Indices: 24975586--24975667 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 30
24975576 TTGAATTTTC
* *
24975586 AAACCAAACTCAAGTATCAAATTGAGATAA
1 AAACCAAACTCAAATATCAAATTGAAATAA
* * * *
24975616 AAA-AAAACTTATATATCCAATT-AAATATTA
1 AAACCAAACTCAAATATCAAATTGAAATA--A
24975646 AAACCAAACTCAAATATCAAAT
1 AAACCAAACTCAAATATCAAAT
24975668 ATTGCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
28 4 0.10
29 14 0.36
30 7 0.18
31 14 0.36
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (30 bp):
AAACCAAACTCAAATATCAAATTGAAATAA
Found at i:24977247 original size:15 final size:15
Alignment explanation
Indices: 24977227--24977255 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24977217 ACCTCTGTCC
24977227 TCAGCTACACTAGCA
1 TCAGCTACACTAGCA
24977242 TCAGCTACACTAGC
1 TCAGCTACACTAGC
24977256 TTTTTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.21
Consensus pattern (15 bp):
TCAGCTACACTAGCA
Found at i:24985864 original size:27 final size:27
Alignment explanation
Indices: 24985837--24986053 Score: 200
Period size: 27 Copynumber: 8.0 Consensus size: 27
24985827 GTCATTCTTT
* *
24985837 ATAGATCGCCACAAAGACTTCCTTTTT
1 ATAGATCGCCACAAAGGCTTCCTTTTC
* *
24985864 ATAGATCGCCACAGAGGTTTCCTTTTC
1 ATAGATCGCCACAAAGGCTTCCTTTTC
* * * * *
24985891 ATGGATCGCAATAGAGGCTTCATTTTC
1 ATAGATCGCCACAAAGGCTTCCTTTTC
*
24985918 ATGGATCGCCACAAAGGCTTCCTTTTC
1 ATAGATCGCCACAAAGGCTTCCTTTTC
* * * * * *
24985945 ATGGGTCACCGCAAAGGCTTCATTTTG
1 ATAGATCGCCACAAAGGCTTCCTTTTC
** * *
24985972 ATAGATTTCCACAAAAGCTTCTTTTTC
1 ATAGATCGCCACAAAGGCTTCCTTTTC
* *
24985999 ATAGATCGTCACAAAGGCTTCGTTTTC
1 ATAGATCGCCACAAAGGCTTCCTTTTC
* * *
24986026 ATAGATTGCTACAAAGACTTCCCTTTTC
1 ATAGATCGCCACAAAGGCTT-CCTTTTC
24986054 TGGCGTGTTC
Statistics
Matches: 153, Mismatches: 36, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
27 147 0.96
28 6 0.04
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (27 bp):
ATAGATCGCCACAAAGGCTTCCTTTTC
Found at i:24993312 original size:16 final size:15
Alignment explanation
Indices: 24993289--24993328 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
24993279 TCTATAAATA
*
24993289 TGATTATGTGTATTG
1 TGATTATGTGTAATG
24993304 TGATATATGTGTAATG
1 TGAT-TATGTGTAATG
24993320 TGATGTATG
1 TGAT-TATG
24993329 CCTAAATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (15 bp):
TGATTATGTGTAATG
Found at i:24993632 original size:156 final size:155
Alignment explanation
Indices: 24993273--24993623 Score: 567
Period size: 156 Copynumber: 2.3 Consensus size: 155
24993263 CTCAAGTGCG
*
24993273 AAATTATCTATAAATATGATTATGTGTATTGTGATATATGTGTAATGTGATGTATGCCTAAATGA
1 AAATTATCTATAAATATG-TTTTGTGTATTGTGATATATGTGTAATGTGATGTATGCCTAAATGA
*
24993338 GGATGTAGTTGCTATGAAAATTATATTAAATTGTATATATGTGTAAAGTGTGTATTGTGATATGT
65 GGATGTAGTTGCTATGAAAATTATATTAAATTGTATATATGTGTAAAGTGTGTATTGTGATATAT
24993403 GTTTATATGACATGTGACCATTATGC
130 GTTTATATGACATGTGACCATTATGC
* * *
24993429 AAATTATCGATAAATATGGTTTCGTGTATTGTGATATATGTGTAATGTGATGTATGCTTAAATGA
1 AAATTATCTATAAATAT-GTTTTGTGTATTGTGATATATGTGTAATGTGATGTATGCCTAAATGA
* * * *
24993494 GTATGTGGTTGCTATGCAAATTATCTTAAATTGTATATATGTGTAAAGTGTGTATTGTGATATAT
65 GGATGTAGTTGCTATGAAAATTATATTAAATTGTATATATGTGTAAAGTGTGTATTGTGATATAT
24993559 GTTTATATGACATGTGACCATTATGC
130 GTTTATATGACATGTGACCATTATGC
* * **
24993585 AATTTATCTATAAACATGTTTTGAATATTGTGATATATG
1 AAATTATCTATAAATATGTTTTGTGTATTGTGATATATG
24993624 CTTGAATGTT
Statistics
Matches: 179, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
155 19 0.11
156 159 0.89
157 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (155 bp):
AAATTATCTATAAATATGTTTTGTGTATTGTGATATATGTGTAATGTGATGTATGCCTAAATGAG
GATGTAGTTGCTATGAAAATTATATTAAATTGTATATATGTGTAAAGTGTGTATTGTGATATATG
TTTATATGACATGTGACCATTATGC
Found at i:24995208 original size:17 final size:17
Alignment explanation
Indices: 24995180--24995213 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
24995170 AATTAATTAA
24995180 CCAACACTCACTTATCTT
1 CCAACACTCACTT-TCTT
24995198 CCAAC-CTCACTTTCTT
1 CCAACACTCACTTTCTT
24995214 GACCGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (17 bp):
CCAACACTCACTTTCTT
Found at i:24995680 original size:21 final size:21
Alignment explanation
Indices: 24995638--24995682 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
24995628 GTTGAAGAAC
* ***
24995638 AAAGAAAATAAAATTGTTTTA
1 AAAGAAAATAAAACTAAATTA
24995659 AAAGAAAATAAAACTAAATTA
1 AAAGAAAATAAAACTAAATTA
24995680 AAA
1 AAA
24995683 TTCTAAACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (21 bp):
AAAGAAAATAAAACTAAATTA
Found at i:24996714 original size:6 final size:6
Alignment explanation
Indices: 24996697--24996740 Score: 79
Period size: 6 Copynumber: 7.2 Consensus size: 6
24996687 TACCTTCTTC
24996697 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
24996741 GGGTTGCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCCCT
Found at i:24999763 original size:21 final size:21
Alignment explanation
Indices: 24999737--24999791 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
24999727 ACCGCTGTTT
*
24999737 CTAATCTCACTGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
*
24999759 C-AATCTCACCGCTATAGTAC
1 CTAATCTCACCGCTACAGTAC
24999779 CTAATCTCACCGC
1 CTAATCTCACCGC
24999792 CACCACTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 27 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:25004734 original size:38 final size:38
Alignment explanation
Indices: 25004691--25004777 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
25004681 AGTCTAATGG
*
25004691 TATTTAATGTTTGAGTTTAGTTTTAATATTTAA-TTAGA
1 TATTTAATGTTTGAGTTTA-ATTTAATATTTAAGTTAGA
* * * *
25004729 TATTTAAATTTTTTATTTTAATTTAATATTTAAGTTTGA
1 TATTT-AATGTTTGAGTTTAATTTAATATTTAAGTTAGA
25004768 T-TTTAATGTT
1 TATTTAATGTT
25004778 CAATCTTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
37 5 0.12
38 20 0.49
39 16 0.39
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (38 bp):
TATTTAATGTTTGAGTTTAATTTAATATTTAAGTTAGA
Found at i:25004740 original size:26 final size:26
Alignment explanation
Indices: 25004711--25004761 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
25004701 TTGAGTTTAG
25004711 TTTTA-ATATTTAA-TTAGATATTTAAA
1 TTTTATAT-TTTAATTTA-ATATTTAAA
*
25004737 TTTTTTATTTTAATTTAATATTTAA
1 TTTTATATTTTAATTTAATATTTAA
25004762 GTTTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTTATATTTTAATTTAATATTTAAA
Found at i:25004772 original size:19 final size:18
Alignment explanation
Indices: 25004711--25004774 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
25004701 TTGAGTTTAG
*
25004711 TTTTAATATTTAATTAGA
1 TTTTAATATTTAATTTGA
* * *
25004729 TATTTAAATTTTTTATTTTA
1 T-TTT-AATATTTAATTTGA
*
25004749 ATTTAATATTTAAGTTTGA
1 TTTTAATATTTAA-TTTGA
25004768 TTTTAAT
1 TTTTAAT
25004775 GTTCAATCTT
Statistics
Matches: 34, Mismatches: 9, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
18 8 0.24
19 16 0.47
20 10 0.29
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTAATATTTAATTTGA
Found at i:25011410 original size:29 final size:29
Alignment explanation
Indices: 25011376--25011450 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
25011366 TTATTGATTA
*
25011376 CCACAAAGGTATTCCTTATCAGAGATTTT
1 CCACAAAGGCATTCCTTATCAGAGATTTT
* *
25011405 CCACAAAGCCATTCCTTATTAGAGATTTT
1 CCACAAAGGCATTCCTTATCAGAGATTTT
* *
25011434 CTATAAAGGCATTCCTT
1 CCACAAAGGCATTCCTT
25011451 TAACAGAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (29 bp):
CCACAAAGGCATTCCTTATCAGAGATTTT
Found at i:25013750 original size:61 final size:58
Alignment explanation
Indices: 25013626--25013752 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 58
25013616 TTAATATTAG
* * * * *
25013626 ATTAATATAATACTTATCAAGATAAATATTAGATTAATTTTAATATTAAATATATTGA
1 ATTAATATAATACTTATCAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
*
25013684 ATTAATATAATACTTATCTACAAGATAAATATTAAATGAAATTTAATATTAAGT-TAATCA
1 ATTAATATAATACTTA--T-CAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
*
25013744 GTTTAATAT
1 -ATTAATAT
25013753 TAAATTAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 16 0.28
60 5 0.09
61 37 0.64
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (58 bp):
ATTAATATAATACTTATCAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
Found at i:25013792 original size:17 final size:17
Alignment explanation
Indices: 25013711--25013804 Score: 61
Period size: 17 Copynumber: 5.5 Consensus size: 17
25013701 CTACAAGATA
* *
25013711 AATATTAAATGAAATTT
1 AATATTAAATTAAATTG
* *
25013728 AATATTAAGTTAATCAGTTT
1 AATATTAAATTAA--A-TTG
**
25013748 AATATTAAATT-AATAA
1 AATATTAAATTAAATTG
*
25013764 AATACT--ATTAAATT-
1 AATATTAAATTAAATTG
25013778 AAGTATTAAATTAAATTG
1 AA-TATTAAATTAAATTG
25013796 AATATTAAA
1 AATATTAAA
25013805 ACTATTAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
14 5 0.08
15 6 0.10
16 6 0.10
17 27 0.44
18 2 0.03
19 2 0.03
20 13 0.21
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTG
Found at i:25017109 original size:68 final size:68
Alignment explanation
Indices: 25016978--25017143 Score: 185
Period size: 68 Copynumber: 2.4 Consensus size: 68
25016968 TAGGATAGTT
* * *
25016978 AACATGGGATCATAGTGTGTAAGACCATAGCTAGGCTATGGAAACAAATGGAGTTCACTAGGACA
1 AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGAAACAAATAGAGTTCACTAGGACA
25017043 CTA
66 CTA
* * *
25017046 AACATGGGTTAATAATGTGTAAGACCATAGCTAGGCTGT-GAGAACATATAGAGTCTGC-C-AGG
1 AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGA-AACAAATAGAGT-T-CACTAGG
*
25017108 ACATTA
63 ACACTA
* * * *
25017114 AACATTGGTTCGTACTGTGTAAAACCATAG
1 AACATGGGTTCATAATGTGTAAGACCATAG
25017144 TTGAGCTATG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
67 2 0.02
68 78 0.94
69 2 0.02
70 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (68 bp):
AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGAAACAAATAGAGTTCACTAGGACA
CTA
Found at i:25021612 original size:17 final size:17
Alignment explanation
Indices: 25021560--25021614 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
25021550 ATTAATGAAT
25021560 ATAAAAATAAACAAA-G
1 ATAAAAATAAACAAATG
* *
25021576 ---AAAATAAATAAATA
1 ATAAAAATAAACAAATG
*
25021590 AGAAAAATAAACAAATG
1 ATAAAAATAAACAAATG
25021607 ATAAAAAT
1 ATAAAAAT
25021615 CAATAAACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
13 11 0.37
17 19 0.63
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.16
Consensus pattern (17 bp):
ATAAAAATAAACAAATG
Found at i:25027449 original size:68 final size:66
Alignment explanation
Indices: 25027277--25027464 Score: 193
Period size: 68 Copynumber: 2.8 Consensus size: 66
25027267 GAGTATGTCC
* * * *
25027277 GGACAGTAAACATGGGATCATAATATGTAATACCATAGTTAGGCTATTGTAACAAATAGAGTTCG
1 GGACATTAAACATGGGTTCATAATATGTAAGACCATAGTTAGGCTA-TG-AAAAAATAGAGTTCG
25027342 TCA
64 TCA
* * *
25027345 GGACATTAAACATGGGTT-ACTAATTTCTAAGACCATAGCTAGGCTATGAAAAAATATGGAG-TC
1 GGACATTAAACATGGGTTCA-TAATATGTAAGACCATAGTTAGGCTATGAAAAAATA--GAGTTC
25027408 -TGCTA
63 GT-C-A
* * * *
25027413 GGGCATTAAACATGGGTTCATACTATGTAAGGCCATAGTTGGGCTATGAAAA
1 GGACATTAAACATGGGTTCATAATATGTAAGACCATAGTTAGGCTATGAAAA
25027465 TAGAAAAGGT
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
66 8 0.08
67 6 0.06
68 85 0.85
69 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (66 bp):
GGACATTAAACATGGGTTCATAATATGTAAGACCATAGTTAGGCTATGAAAAAATAGAGTTCGTC
A
Found at i:25029437 original size:21 final size:21
Alignment explanation
Indices: 25029412--25029454 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
25029402 TTGTATGTTT
25029412 GCTTCAATGGTTAGTGTTTTG
1 GCTTCAATGGTTAGTGTTTTG
*
25029433 GCTTCAGTGGTTAGTGTTTTG
1 GCTTCAATGGTTAGTGTTTTG
25029454 G
1 G
25029455 GAAGTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.12, C:0.09, G:0.33, T:0.47
Consensus pattern (21 bp):
GCTTCAATGGTTAGTGTTTTG
Found at i:25034174 original size:11 final size:11
Alignment explanation
Indices: 25034160--25034185 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25034150 CCTTTATATA
25034160 TTTTTTAGAAT
1 TTTTTTAGAAT
25034171 TTTTTTAGAAT
1 TTTTTTAGAAT
25034182 TTTT
1 TTTT
25034186 ATAGTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTTAGAAT
Found at i:25034238 original size:19 final size:19
Alignment explanation
Indices: 25034202--25034257 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
25034192 TTTAAAAAAA
25034202 AATAA-ATTTTGAAATTTTT
1 AATAATATTTTG-AATTTTT
25034221 -ATAAATATTTTGAATTTTT
1 AAT-AATATTTTGAATTTTT
*
25034240 AATATTATTTT-AATTTTT
1 AATAATATTTTGAATTTTT
25034258 TGTAATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 9 0.27
19 16 0.48
20 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
AATAATATTTTGAATTTTT
Found at i:25034371 original size:18 final size:18
Alignment explanation
Indices: 25034337--25034371 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25034327 ACAATTTGTT
*
25034337 ATTTGAATTATTTAAATG
1 ATTTGAATTATTAAAATG
*
25034355 ATTTGAATTGTTAAAAT
1 ATTTGAATTATTAAAAT
25034372 TTAACTCGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
ATTTGAATTATTAAAATG
Found at i:25036196 original size:13 final size:13
Alignment explanation
Indices: 25036178--25036205 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25036168 ACTGTGGTTC
25036178 CCTTATATACATG
1 CCTTATATACATG
25036191 CCTTATATACATG
1 CCTTATATACATG
25036204 CC
1 CC
25036206 ATAATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (13 bp):
CCTTATATACATG
Found at i:25038448 original size:45 final size:45
Alignment explanation
Indices: 25038384--25038471 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
25038374 ATAGATACTC
* * *
25038384 GGTGGATTCATCACATAGCAACCACCTTATTAATCAATGATGTCT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCT
25038429 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
25038472 TCGATTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCT
Found at i:25038547 original size:51 final size:50
Alignment explanation
Indices: 25038482--25038668 Score: 189
Period size: 51 Copynumber: 3.7 Consensus size: 50
25038472 TCGATTCACA
* * * *
25038482 TAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCCGATAGACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCTGGTAGACG
* * * * *
25038533 TAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCTGGTACG-CA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCTGGTA-GACG
* * * * *
25038584 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCTGGTAGACG
*
25038634 TAGTAGCCTGTACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
25038669 CACTTTCACT
Statistics
Matches: 109, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
49 2 0.02
50 38 0.35
51 66 0.61
52 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCTGGTAGACG
Found at i:25038661 original size:101 final size:101
Alignment explanation
Indices: 25038480--25038664 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
25038470 GTTCGATTCA
* * *
25038480 CATAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCCGATAGACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTACA
25038545 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* ** * **
25038582 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTTGGTACACGTAGTAGCCTGTA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTACA
25038646 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
25038665 CCATCACTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 4 0.05
101 36 0.49
102 33 0.45
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:25038938 original size:30 final size:30
Alignment explanation
Indices: 25038897--25038953 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25038887 AAAATCATAC
*
25038897 TTTTGCAAAATTA-CATTTTTGCCCCTAAAG
1 TTTTACAAAATTATCATTTTT-CCCCTAAAG
*
25038927 TTTTACAAAATTATGATTTTTCCCCTA
1 TTTTACAAAATTATCATTTTTCCCCTA
25038954 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (30 bp):
TTTTACAAAATTATCATTTTTCCCCTAAAG
Found at i:25042914 original size:6 final size:6
Alignment explanation
Indices: 25042903--25042927 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25042893 GCAATTGGTA
25042903 ATGTAT ATGTAT ATGTAT ATGTAT A
1 ATGTAT ATGTAT ATGTAT ATGTAT A
25042928 AACTCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:25053516 original size:10 final size:10
Alignment explanation
Indices: 25053501--25053533 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
25053491 ATTAATATGT
*
25053501 TTAATTTTAA
1 TTAATTTTGA
25053511 TTAATTTTGA
1 TTAATTTTGA
25053521 TTAATTTTGA
1 TTAATTTTGA
25053531 TTA
1 TTA
25053534 TATTCGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (10 bp):
TTAATTTTGA
Found at i:25054803 original size:33 final size:32
Alignment explanation
Indices: 25054766--25054838 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
25054756 AAAGCCAAAT
*
25054766 CCAAAACAAAACAGTTGGCCCAGAATACA-TGGC
1 CCAAAACAAAACAG-AGG-CCAGAATACAGTGGC
* * *
25054799 CCAAAATAAAACAGAGGCCTGAATCCAGTGGC
1 CCAAAACAAAACAGAGGCCAGAATACAGTGGC
25054831 CCAAAACA
1 CCAAAACA
25054839 GTTGCAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 8 0.24
32 13 0.38
33 13 0.38
ACGTcount: A:0.44, C:0.27, G:0.18, T:0.11
Consensus pattern (32 bp):
CCAAAACAAAACAGAGGCCAGAATACAGTGGC
Found at i:25068585 original size:84 final size:84
Alignment explanation
Indices: 25068436--25068804 Score: 415
Period size: 84 Copynumber: 4.3 Consensus size: 84
25068426 ACCATAATCC
* * * *
25068436 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAATAGGTCTTATCTCTCTGAAGATGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGCAGAG
*
25068501 AGCAGACCGCATCTAGTCT
66 AGCAGATCGCATCTAGTCT
*
25068520 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGCAGAG
**
25068585 AGCAGATCATATC-AGGTCT
66 AGCAGATCGCATCTA-GTCT
* * ** *
25068604 TATCTCCCTGAAGTTACAGTGGAGCAGACCT-AAGATG-GCGAATCTTATCTCCCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAG-TGATAG-ATCTTATCTCTCTGAAGTTGCA
* * * *
25068667 -ATGGAGCAGATTAAAGCCA-ATAATCC
63 GA--GAGCAGA-T--CG-CATCTAGTCT
* * * *
25068693 TATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGCAGAG
25068758 AGCAGATCGCATCTAGTCT
66 AGCAGATCGCATCTAGTCT
*
25068777 TATCTCCCTAAAGTTGCAGTGGAGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
25068805 CCCGAATAAG
Statistics
Matches: 235, Mismatches: 35, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
83 3 0.01
84 135 0.57
85 23 0.10
86 8 0.03
87 8 0.03
88 23 0.10
89 33 0.14
90 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCGCATCTAGTCT
Found at i:25068615 original size:40 final size:40
Alignment explanation
Indices: 25068474--25068618 Score: 132
Period size: 40 Copynumber: 3.5 Consensus size: 40
25068464 TTAAAGTAAT
* * * **
25068474 AGGTCTTATCTCTCTGAAGATGCAGAGAGCAGACCGCATC
1 AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
* *
25068514 TA-GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGAT-
1 -AGGTCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-T-CA-T-ATC
* * *
25068558 AGATCTTATCTCTCTGAAGTTGTAGAGAGCAGATCATATC
1 AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
25068598 AGGTCTTATCTCCCTGAAGTT
1 AGGTCTTATCTCCCTGAAGTT
25068619 ACAGTGGAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
39 2 0.02
40 41 0.49
41 9 0.11
42 1 0.01
43 8 0.10
44 20 0.24
45 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (40 bp):
AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
Found at i:25068823 original size:45 final size:44
Alignment explanation
Indices: 25068734--25068889 Score: 158
Period size: 44 Copynumber: 3.6 Consensus size: 44
25068724 AAGTGATAGA
* * * * *
25068734 TCTTATCTCTCTAAAGTTGCAG-AGAGCAGATCGCAT---CTAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
*
25068774 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCCGAATAAGCAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CCGAATAAACAAG
* * * * *
25068819 TCTTATCCCCCTAAAATTGCAGTGGGGCAGACTGAATAAACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
* *
25068863 TCCTATCTCCCTAAAGTTGTAGTGGAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAG
25068890 TGGATTAGAA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
40 21 0.22
41 7 0.07
42 4 0.04
44 32 0.34
45 31 0.33
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
Found at i:25068825 original size:173 final size:173
Alignment explanation
Indices: 25068520--25068945 Score: 497
Period size: 173 Copynumber: 2.5 Consensus size: 173
25068510 CATCTAGTCT
* * *
25068520 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
** * * *
25068585 AGCAGATCATATCAGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCTAAGATGGCGAATCTT
66 AGCAGATCGCATCAGGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACCGAAGATAGCGAATCTT
* * * * **
25068650 ATCTCCCTGAAGTTGCAATGGAGCAGA-TTAA-AGCCAATAATCC
131 ATCCCCCTAAAATTGCAATGGAGCAGACTGAATAAAC-A-AATCC
* *
25068693 TATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
* *
25068758 AGCAGATCGCATCTA-GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCCGAATA-AGC-AAGT
66 AGCAGATCGCATC-AGGTCTTATCTCCCTAAAGTTACAGTGGAGCAGA-CCGAAGATAGCGAA-T
* *
25068820 CTTATCCCCCTAAAATTGCAGTGGGGCAGACTGAATAAACAAATCC
128 CTTATCCCCCTAAAATTGCAATGGAGCAGACTGAATAAACAAATCC
* * * * * *
25068866 TATCTCCCTAAAGTTGTAGTGGAGTGGATTAGAA-TCATAAATCTTATCTCTCTGAAA-TTACAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTA-AAGTGATAGATCTTATCTCTCT-AAAGTTGCAG
25068929 TAGAGCAGATCGCATCA
64 -AGAGCAGATCGCATCA
25068946 AATTTATCTT
Statistics
Matches: 217, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
172 2 0.01
173 183 0.84
174 30 0.14
175 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (173 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
AGCAGATCGCATCAGGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACCGAAGATAGCGAATCTT
ATCCCCCTAAAATTGCAATGGAGCAGACTGAATAAACAAATCC
Found at i:25076006 original size:16 final size:15
Alignment explanation
Indices: 25075979--25076012 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
25075969 ATAACTAGTA
*
25075979 TATAATTATATTTAT
1 TATAATTATATTAAT
25075994 TATAATATATATTAAT
1 TATAAT-TATATTAAT
25076010 TAT
1 TAT
25076013 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:25076503 original size:25 final size:26
Alignment explanation
Indices: 25076461--25076514 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
25076451 TTCTCTCAAA
*
25076461 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATTAAATTA-TTAATAT
25076487 TTTCAA-TTTATTAAATTATTAATAT
1 TTTCAATTTTATTAAATTATTAATAT
25076512 TTT
1 TTT
25076515 ATACGAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 15 0.58
26 6 0.23
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTAAATTATTAATAT
Found at i:25077418 original size:3 final size:3
Alignment explanation
Indices: 25077410--25077441 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
25077400 TGAGGATCCC
25077410 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
25077442 TCCCACAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:25078590 original size:32 final size:32
Alignment explanation
Indices: 25078549--25078612 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
25078539 ATTCAAACCC
*
25078549 TTGCAATATTTAGGCATCACTTTTCTCTTAAT
1 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
25078581 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
1 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
25078613 CATCTGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.47
Consensus pattern (32 bp):
TTGCAATATTTAGCCATCACTTTTCTCTTAAT
Found at i:25091152 original size:15 final size:15
Alignment explanation
Indices: 25091134--25091166 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25091124 CAAATGCTAT
25091134 AATAATAAATACAAC
1 AATAATAAATACAAC
*
25091149 AATAATAAATACATC
1 AATAATAAATACAAC
25091164 AAT
1 AAT
25091167 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:25092890 original size:44 final size:44
Alignment explanation
Indices: 25092810--25093075 Score: 181
Period size: 44 Copynumber: 6.1 Consensus size: 44
25092800 TTGATCAGAA
* ** *
25092810 AGATAAGATCTGAGATTTTAATCCGCTCCA-TCGCAACTTCAGGG
1 AGATAAGATTTGTTATTTTAATCTGCTCCACT-GCAACTTCAGGG
* * *
25092854 TGATAGGA-TTGTTGGTTTTAATCTGCTCCACTGCAACTTCAGGG
1 AGATAAGATTTGTT-ATTTTAATCTGCTCCACTGCAACTTCAGGG
* *
25092898 AGATAAGATTTGTTATCTTCAGTCTGC-CTCACTGCAACTTCA-GG
1 AGATAAGATTTGTTAT-TTTAATCTGCTC-CACTGCAACTTCAGGG
* * * * *
25092942 AGGATAAGACTTGCTTA-CTTAGTCTGCTCCACTACAACTTCAAGG
1 A-GATAAGATTTG-TTATTTTAATCTGCTCCACTGCAACTTCAGGG
* * *** * * *
25092987 AGATAAGACTAG--A-TGCGATCTGCT-CTCTGTAACTTCAGAG
1 AGATAAGATTTGTTATTTTAATCTGCTCCACTGCAACTTCAGGG
* ** *
25093027 AGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGG
1 AGATAAGATTTGTTATTTTAATCTGCTCCACTGCAACTTCAGGG
25093071 AGATA
1 AGATA
25093076 GGATCCCGGC
Statistics
Matches: 172, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
40 20 0.12
41 7 0.04
42 1 0.01
43 9 0.05
44 91 0.53
45 41 0.24
46 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGTTATTTTAATCTGCTCCACTGCAACTTCAGGG
Found at i:25092931 original size:45 final size:43
Alignment explanation
Indices: 25092875--25092996 Score: 158
Period size: 45 Copynumber: 2.7 Consensus size: 43
25092865 TTGGTTTTAA
*
25092875 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TTATCTTCAG
1 TCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGCTTA-CTT-AG
25092920 TCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGCTTACTTAG
*
25092964 TCTGCTCCACTACAACTTCAAGGAGATAAGACT
1 TCTGCTCCACTGCAACTTC-AGGAGATAAGACT
25092997 AGATGCGATC
Statistics
Matches: 70, Mismatches: 2, Indels: 11
0.84 0.02 0.13
Matches are distributed among these distances:
44 31 0.44
45 36 0.51
46 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGAGATAAGACTTGCTTACTTAG
Found at i:25104795 original size:15 final size:15
Alignment explanation
Indices: 25104777--25104809 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25104767 CAAATGCTAT
25104777 AATAATAAATACAAC
1 AATAATAAATACAAC
*
25104792 AATAATAAATACATC
1 AATAATAAATACAAC
25104807 AAT
1 AAT
25104810 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:25113002 original size:16 final size:16
Alignment explanation
Indices: 25112981--25113012 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25112971 GTTTTGTTGC
*
25112981 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
25112997 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
25113013 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:25114527 original size:47 final size:47
Alignment explanation
Indices: 25114475--25114574 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 47
25114465 TGGTTGGACC
* * *
25114475 ATGGCAACA-TGTGATATGTGATTTCCGTATAAGACCATATCTAGGTT
1 ATGGCAACAGTGTGATATGTG-CTACCGTATAAGACCATAGCTAGGTT
* * * *
25114522 ATGGCATCAGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGGTT
1 ATGGCAACAGTGTGATATGTGCTACCGTATAAGACCATAGCTAGGTT
25114569 ATGGCA
1 ATGGCA
25114575 TCAATATGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 34 0.76
48 11 0.24
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (47 bp):
ATGGCAACAGTGTGATATGTGCTACCGTATAAGACCATAGCTAGGTT
Done.