Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 88 of 207
Found at i:25744918 original size:34 final size:33
Alignment explanation
Indices: 25744864--25744930 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 33
25744854 AAAAATTTCA
25744864 GCCCACGTCCTGGCCTGGGCCTGGCCCGACCCG
1 GCCCACGTCCTGGCCTGGGCCTGGCCCGACCCG
25744897 GCCCACGTCCTAGGCCTGGGCCTGGCCCGACCCG
1 GCCCACGTCCT-GGCCTGGGCCTGGCCCGACCCG
25744931 AAATATGGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 11 0.33
34 22 0.67
ACGTcount: A:0.07, C:0.48, G:0.33, T:0.12
Consensus pattern (33 bp):
GCCCACGTCCTGGCCTGGGCCTGGCCCGACCCG
Found at i:25749294 original size:50 final size:50
Alignment explanation
Indices: 25749218--25749509 Score: 433
Period size: 50 Copynumber: 5.8 Consensus size: 50
25749208 ATTTGGGTAA
*
25749218 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
25749268 TGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
25749318 ATAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
25749368 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
25749418 AGAGGTCCCCCGTAAGACCATGTC-GGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
25749467 AGTACATCCCATGTAAGACCACGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
25749510 TGTTATGATC
Statistics
Matches: 216, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
49 24 0.11
50 177 0.82
51 15 0.07
ACGTcount: A:0.25, C:0.24, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:25752116 original size:23 final size:21
Alignment explanation
Indices: 25752071--25752137 Score: 75
Period size: 22 Copynumber: 3.2 Consensus size: 21
25752061 AAAAGCTATC
*
25752071 TACAAATCAAATATCTAAGAT
1 TACAAATCATATATCTAAGAT
*
25752092 TACAAAATCATATATTCTAATAT
1 TAC-AAATCATATA-TCTAAGAT
*
25752115 TACATATCATAT-T-TAAGAT
1 TACAAATCATATATCTAAGAT
25752134 TACA
1 TACA
25752138 TATCTTCGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 9 0.22
20 1 0.03
21 3 0.08
22 17 0.43
23 10 0.25
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATATCTAAGAT
Found at i:25752137 original size:19 final size:20
Alignment explanation
Indices: 25752084--25752141 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
25752074 AAATCAAATA
*
25752084 TCTAAGATTACAAAATCATATAT
1 TCTAAGATTAC-ATATC--ATAT
*
25752107 TCTAATATTACATATCATAT
1 TCTAAGATTACATATCATAT
25752127 T-TAAGATTACATATC
1 TCTAAGATTACATATC
25752142 TTCGAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 13 0.41
20 5 0.16
22 4 0.12
23 10 0.31
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:25753457 original size:9 final size:9
Alignment explanation
Indices: 25753443--25753478 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
25753433 TAAGACTTTT
25753443 TAAAAATTA
1 TAAAAATTA
25753452 TAAAAA-TA
1 TAAAAATTA
25753460 T--AAATTA
1 TAAAAATTA
25753467 TAAAAATTA
1 TAAAAATTA
25753476 TAA
1 TAA
25753479 TTATAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
6 3 0.12
7 3 0.12
8 3 0.12
9 15 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAAATTA
Found at i:25753466 original size:15 final size:14
Alignment explanation
Indices: 25753446--25753484 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
25753436 GACTTTTTAA
25753446 AAATTATAAAAATAT
1 AAATTATAAAAAT-T
25753461 AAATTATAAAAATT
1 AAATTATAAAAATT
25753475 ATAATTATAA
1 A-AATTATAA
25753485 TTTTACAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 2 0.09
15 21 0.91
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATTATAAAAATT
Found at i:25761221 original size:50 final size:49
Alignment explanation
Indices: 25761097--25761232 Score: 159
Period size: 49 Copynumber: 2.8 Consensus size: 49
25761087 GATAATAACA
* * *
25761097 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCTTGTAC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATCTAC
* * * *
25761146 TACCAATGCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATCT-C
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCATCTAC
*
25761194 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 --TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA
25761233 CCTCTTTACC
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 4 0.05
49 36 0.49
50 33 0.45
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATCTAC
Found at i:25770800 original size:25 final size:25
Alignment explanation
Indices: 25770726--25770803 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
25770716 GTCATTAGGG
* *
25770726 TTACCGACTCTCAGCTCGTATGAGC
1 TTACCGATTCTCAACTCGTATGAGC
* * **
25770751 TTACCAATT-TGCAACTCTTGCGAGC
1 TTACCGATTCT-CAACTCGTATGAGC
25770776 TTACCGATTCTCAACTCGTATGAGC
1 TTACCGATTCTCAACTCGTATGAGC
25770801 TTA
1 TTA
25770804 TTGATTTATA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (25 bp):
TTACCGATTCTCAACTCGTATGAGC
Found at i:25770818 original size:25 final size:25
Alignment explanation
Indices: 25770790--25770853 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
25770780 CGATTCTCAA
* * *
25770790 CTCGTATGAGCTTATTGATTTATAG
1 CTCGTATGAGCATATCGATTCATAG
25770815 CTCGTGA-GAGCATATCGATTCATAG
1 CTCGT-ATGAGCATATCGATTCATAG
*
25770840 CTCGTATGAACATA
1 CTCGTATGAGCATA
25770854 CATGTACAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 31 0.94
26 1 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (25 bp):
CTCGTATGAGCATATCGATTCATAG
Found at i:25774102 original size:13 final size:13
Alignment explanation
Indices: 25774072--25774101 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
25774062 TATAGATATA
25774072 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
25774085 TTTTTC-TTTCTT
1 TTTTTCTTTTCTT
25774097 TTTTT
1 TTTTT
25774102 TGAACATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTCTTTTCTT
Found at i:25775090 original size:7 final size:7
Alignment explanation
Indices: 25775078--25775127 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
25775068 ATATAAACAG
25775078 AAAATAA
1 AAAATAA
25775085 AAAATAA
1 AAAATAA
25775092 AAAAT-A
1 AAAATAA
*
25775098 ACAATAA
1 AAAATAA
25775105 AAGAA-AA
1 AA-AATAA
*
25775112 TAAAAGAA
1 -AAAATAA
25775120 AAAATAA
1 AAAATAA
25775127 A
1 A
25775128 CTTAATGGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
6 5 0.14
7 25 0.69
8 6 0.17
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:25775115 original size:10 final size:10
Alignment explanation
Indices: 25775070--25775121 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
25775060 GAAAATAAAT
25775070 ATAAACAGAAA
1 ATAAA-AGAAA
25775081 ATAAAA-AATA
1 ATAAAAGAA-A
*
25775091 A-AAAATAACA
1 ATAAAAGAA-A
25775101 ATAAAAGAAA
1 ATAAAAGAAA
25775111 ATAAAAGAAA
1 ATAAAAGAAA
25775121 A
1 A
25775122 AATAAACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 6 0.17
10 19 0.53
11 11 0.31
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.12
Consensus pattern (10 bp):
ATAAAAGAAA
Found at i:25775648 original size:21 final size:21
Alignment explanation
Indices: 25775622--25775663 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25775612 TGCTCCATAG
25775622 AAAGTTTGCATCGGTAGTACT
1 AAAGTTTGCATCGGTAGTACT
25775643 AAAGTTTGCATCGGTAGTACT
1 AAAGTTTGCATCGGTAGTACT
25775664 GACGACGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (21 bp):
AAAGTTTGCATCGGTAGTACT
Found at i:25779877 original size:22 final size:23
Alignment explanation
Indices: 25779847--25779889 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
25779837 AGAACCTACC
*
25779847 AGAAGAAAA-TAAAATAAAAATT
1 AGAAAAAAACTAAAATAAAAATT
*
25779869 AGAAAAAAACTAAACTAAAAA
1 AGAAAAAAACTAAAATAAAAA
25779890 AAATAGAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (23 bp):
AGAAAAAAACTAAAATAAAAATT
Found at i:25786037 original size:174 final size:174
Alignment explanation
Indices: 25785747--25786094 Score: 687
Period size: 174 Copynumber: 2.0 Consensus size: 174
25785737 TTTGATTCGT
25785747 GAGATTGAAGAAAAAGTGAAAGTGATCCGAGATAGTTTGAAAGTAGCTTCAGATAGTCAGAAATC
1 GAGATTGAAGAAAAAGTGAAAGTGATCCGAGATAGTTTGAAAGTAGCTTCAGATAGTCAGAAATC
25785812 ATATGTGGATCTTAAATGTAAAGATATAGAGTTCTAAGTCGGCGATAGAGTATTCTTGAAAGTTT
66 ATATGTGGATCTTAAATGTAAAGATATAGAGTTCTAAGTCGGCGATAGAGTATTCTTGAAAGTTT
25785877 CACCTTGGAAGAAAGTTCTTTGGTTTGGTGGCAAAGGAAAGCTG
131 CACCTTGGAAGAAAGTTCTTTGGTTTGGTGGCAAAGGAAAGCTG
25785921 GAGATTGAAGAAAAAGTGAAAGTGATCCGAGATAGTTTGAAAGTAGCTTCAGATAGTCAGAAATC
1 GAGATTGAAGAAAAAGTGAAAGTGATCCGAGATAGTTTGAAAGTAGCTTCAGATAGTCAGAAATC
*
25785986 ATATGTGGATCTTAAATGTAAAGATATAGAGTTCTAAGTCGGTGATAGAGTATTCTTGAAAGTTT
66 ATATGTGGATCTTAAATGTAAAGATATAGAGTTCTAAGTCGGCGATAGAGTATTCTTGAAAGTTT
25786051 CACCTTGGAAGAAAGTTCTTTGGTTTGGTGGCAAAGGAAAGCTG
131 CACCTTGGAAGAAAGTTCTTTGGTTTGGTGGCAAAGGAAAGCTG
25786095 AGTCCGTGAT
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 173 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (174 bp):
GAGATTGAAGAAAAAGTGAAAGTGATCCGAGATAGTTTGAAAGTAGCTTCAGATAGTCAGAAATC
ATATGTGGATCTTAAATGTAAAGATATAGAGTTCTAAGTCGGCGATAGAGTATTCTTGAAAGTTT
CACCTTGGAAGAAAGTTCTTTGGTTTGGTGGCAAAGGAAAGCTG
Found at i:25787727 original size:25 final size:25
Alignment explanation
Indices: 25787688--25787768 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
25787678 TTATCGATTC
25787688 TCAGCTCTT-ATGAGCTTACCAATT
1 TCAGCTCTTGATGAGCTTACCAATT
* *
25787712 TGCAGCTCTTGA-GAGCTTATCGATT
1 T-CAGCTCTTGATGAGCTTACCAATT
*
25787737 CTCAGCTC-AGATGAGCTTACCAATT
1 -TCAGCTCTTGATGAGCTTACCAATT
25787762 TACAGCT
1 T-CAGCT
25787769 TGTGAGAACA
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.09
25 41 0.87
26 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (25 bp):
TCAGCTCTTGATGAGCTTACCAATT
Found at i:25787802 original size:50 final size:51
Alignment explanation
Indices: 25787679--25787787 Score: 134
Period size: 50 Copynumber: 2.2 Consensus size: 51
25787669 TCATTAGGGT
* * * * *
25787679 TATCGATTCTCAGCTC-TTATGAGCTTACCAATTTGCAGCTCTTGAGAGCT
1 TATCAATTCTCAGCTCAGTATGAGCTTACCAATTTACAGCTCTTGAGAACA
*
25787729 TATCGATTCTCAGCTCAG-ATGAGCTTACCAATTTACAGCT-TGTGAGAACA
1 TATCAATTCTCAGCTCAGTATGAGCTTACCAATTTACAGCTCT-TGAGAACA
25787779 TATCAATTC
1 TATCAATTC
25787788 ATAGTTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
49 1 0.02
50 51 0.98
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (51 bp):
TATCAATTCTCAGCTCAGTATGAGCTTACCAATTTACAGCTCTTGAGAACA
Found at i:25792763 original size:10 final size:11
Alignment explanation
Indices: 25792714--25792772 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
25792704 AGATAAATAT
25792714 TATTTTATTAA
1 TATTTTATTAA
25792725 TATTTTGACTTGAA
1 TATTTT-A-TT-AA
*
25792739 -A-TTTATTTA
1 TATTTTATTAA
25792748 TATTTTATTAA
1 TATTTTATTAA
25792759 T-TTTTAGTTAA
1 TATTTTA-TTAA
25792770 TAT
1 TAT
25792773 ATAAGGAAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
9 1 0.03
10 8 0.21
11 20 0.51
12 5 0.13
13 3 0.08
14 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:25796628 original size:47 final size:47
Alignment explanation
Indices: 25796576--25796981 Score: 668
Period size: 47 Copynumber: 8.6 Consensus size: 47
25796566 GATAATTGTG
* *
25796576 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25796623 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25796672 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25796719 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25796766 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25796815 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25796862 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
25796909 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25796956 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25796982 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 245 0.72
49 94 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25796678 original size:96 final size:94
Alignment explanation
Indices: 25796576--25796981 Score: 668
Period size: 96 Copynumber: 4.3 Consensus size: 94
25796566 GATAATTGTG
* *
25796576 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
25796641 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
25796672 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25796737 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
25796766 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
25796831 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25796862 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
25796927 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
25796956 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25796982 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 145 0.49
96 149 0.51
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25796724 original size:143 final size:143
Alignment explanation
Indices: 25796576--25796981 Score: 690
Period size: 143 Copynumber: 2.9 Consensus size: 143
25796566 GATAATTGTG
* *
25796576 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
25796641 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
25796706 GCCGATGTGATGA
131 GCCGATGTGATGA
25796719 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25796784 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
25796849 GCCGATGTGATGA
131 GCCGATGTGATGA
*
25796862 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * * *
25796925 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25796982 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
141 54 0.22
143 197 0.78
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGA
Found at i:25799177 original size:38 final size:38
Alignment explanation
Indices: 25799113--25799187 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
25799103 AATCCGAGTT
*
25799113 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
25799151 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
25799188 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:25799300 original size:40 final size:40
Alignment explanation
Indices: 25799241--25799519 Score: 411
Period size: 40 Copynumber: 7.0 Consensus size: 40
25799231 AGGTCTCGAC
25799241 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
25799280 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
25799320 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
25799359 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
25799399 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
25799439 GATATATCTGTGCTAA-ACCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
25799478 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
25799518 GA
1 GA
25799520 CGTGTATTCG
Statistics
Matches: 215, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 74 0.34
40 141 0.66
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:25799377 original size:79 final size:80
Alignment explanation
Indices: 25799241--25799519 Score: 411
Period size: 79 Copynumber: 3.5 Consensus size: 80
25799231 AGGTCTCGAC
25799241 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
25799305 AGCATTCATGCTAGT
66 AGCATTCGTGCTAGT
*
25799320 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
25799384 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
* * * * * *
25799399 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCTGTGCTAA-ACCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
25799463 AGCATTCGTGCTGGT
66 AGCATTCGTGCTAGT
* * * * *
25799478 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
25799520 CGTGTATTCG
Statistics
Matches: 182, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
79 135 0.74
80 47 0.26
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGT
Found at i:25799461 original size:119 final size:119
Alignment explanation
Indices: 25799241--25799519 Score: 416
Period size: 119 Copynumber: 2.4 Consensus size: 119
25799231 AGGTCTCGAC
*
25799241 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAG
* **
25799305 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGT
66 AGCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCGTGCTAGT
* *
25799359 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAG
* * * *
25799424 AGCATTCGTGCTAGTGATATATCTGTGCTAAACCCGAAGAGCATTCGTGCTGGT
66 AGCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCGTGCTAGT
* * * * *
25799478 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
25799520 CGTGTATTCG
Statistics
Matches: 144, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
118 4 0.03
119 140 0.97
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAG
AGCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCGTGCTAGT
Found at i:25802998 original size:47 final size:47
Alignment explanation
Indices: 25802946--25803492 Score: 909
Period size: 47 Copynumber: 11.6 Consensus size: 47
25802936 GATAATTGTG
* *
25802946 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25802993 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803042 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803089 ATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803134 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803183 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25803230 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803277 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25803326 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25803373 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
25803420 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25803467 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25803493 TCCCGAAGGG
Statistics
Matches: 474, Mismatches: 18, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
45 20 0.04
46 7 0.01
47 327 0.69
48 7 0.01
49 113 0.24
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25803390 original size:237 final size:234
Alignment explanation
Indices: 25802946--25803492 Score: 907
Period size: 237 Copynumber: 2.3 Consensus size: 234
25802936 GATAATTGTG
* *
25802946 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
25803011 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
64 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
25803076 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATGGCCATGTGATGAATGTGAA
129 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATAGCCATGTGATGAATGTGAA
25803141 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
194 AGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25803183 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25803248 GTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
25803313 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
129 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-AATAGCC-ATGTGATGAATGTG
*
25803378 AAAGTG-TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
192 AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
25803420 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25803485 GTGATAAG
66 GTGATAAG
25803493 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
235 46 0.16
237 221 0.75
238 6 0.02
239 20 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (234 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATAGCCATGTGATGAATGTGAAAG
TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25808448 original size:19 final size:19
Alignment explanation
Indices: 25808409--25808463 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
25808399 TATAAAAATT
* *
25808409 TACAAGAAAATATTGATAAA
1 TACAAGAATATA-TGAAAAA
25808429 TA-AAGAATATAGTGAAAAA
1 TACAAGAATATA-TGAAAAA
25808448 TACAAGAATATATGAA
1 TACAAGAATATATGAA
25808464 TATATTAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.65
20 11 0.35
ACGTcount: A:0.60, C:0.04, G:0.13, T:0.24
Consensus pattern (19 bp):
TACAAGAATATATGAAAAA
Found at i:25808988 original size:22 final size:22
Alignment explanation
Indices: 25808940--25809060 Score: 107
Period size: 22 Copynumber: 5.5 Consensus size: 22
25808930 AAATTTAGCA
* * **
25808940 TGCTTACTGTCTTGCGCTTTTG
1 TGCTTACTGTTTTGCACTTCGG
* * * *
25808962 CGCTTACTGTTTCGCACTTTGT
1 TGCTTACTGTTTTGCACTTCGG
*
25808984 TGCTTACCGTTTTGCACTTCGG
1 TGCTTACTGTTTTGCACTTCGG
* * *
25809006 TACCTACTGTTTTGCACTTTGG
1 TGCTTACTGTTTTGCACTTCGG
* *
25809028 TGCTTAGTGATTTGCACTTCGG
1 TGCTTACTGTTTTGCACTTCGG
*
25809050 TGCCTACTGTT
1 TGCTTACTGTT
25809061 CTTATCTCTG
Statistics
Matches: 76, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 76 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (22 bp):
TGCTTACTGTTTTGCACTTCGG
Found at i:25809014 original size:44 final size:44
Alignment explanation
Indices: 25808966--25809060 Score: 136
Period size: 44 Copynumber: 2.2 Consensus size: 44
25808956 CTTTTGCGCT
* *
25808966 TACTGTTTCGCACTTTGTTGCTTACCGTTTTGCACTTCGGTACC
1 TACTGTTTCGCACTTTGGTGCTTACCGATTTGCACTTCGGTACC
* ** *
25809010 TACTGTTTTGCACTTTGGTGCTTAGTGATTTGCACTTCGGTGCC
1 TACTGTTTCGCACTTTGGTGCTTACCGATTTGCACTTCGGTACC
25809054 TACTGTT
1 TACTGTT
25809061 CTTATCTCTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (44 bp):
TACTGTTTCGCACTTTGGTGCTTACCGATTTGCACTTCGGTACC
Found at i:25820531 original size:24 final size:24
Alignment explanation
Indices: 25820499--25820551 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
25820489 ATAAGGAAAG
25820499 AAATAACAAATAT-TGTATGCTAAT
1 AAATAACAAATATAT-TATGCTAAT
*
25820523 AAATGACAAATATATTATGCTAAT
1 AAATAACAAATATATTATGCTAAT
25820547 AAATA
1 AAATA
25820552 CTAAGTATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.32
Consensus pattern (24 bp):
AAATAACAAATATATTATGCTAAT
Found at i:25833191 original size:30 final size:30
Alignment explanation
Indices: 25833157--25833215 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
25833147 TGTGTGGTCA
25833157 GGCCGTGTGCCTCACAAGCTCGTATGGCCG
1 GGCCGTGTGCCTCACAAGCTCGTATGGCCG
* * *
25833187 GGCCGTGTGTCTCACACGCTCGTGTGGCC
1 GGCCGTGTGCCTCACAAGCTCGTATGGCC
25833216 AGACTGTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.10, C:0.34, G:0.34, T:0.22
Consensus pattern (30 bp):
GGCCGTGTGCCTCACAAGCTCGTATGGCCG
Found at i:25833231 original size:30 final size:30
Alignment explanation
Indices: 25833159--25833232 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
25833149 TGTGGTCAGG
* *
25833159 CCGTGTGCCTCACAAGCTCGTATGGCCGGG
1 CCGTGTGCCTCACAAGCTCGTATGGCCAGA
* * *
25833189 CCGTGTGTCTCACACGCTCGTGTGGCCAGA
1 CCGTGTGCCTCACAAGCTCGTATGGCCAGA
* *
25833219 CTGTGTACCTCACA
1 CCGTGTGCCTCACA
25833233 TGGCTGAGAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.15, C:0.34, G:0.28, T:0.23
Consensus pattern (30 bp):
CCGTGTGCCTCACAAGCTCGTATGGCCAGA
Found at i:25838989 original size:19 final size:19
Alignment explanation
Indices: 25838965--25839004 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
25838955 CTATTTAACT
25838965 GTGATGTCGAGGAAGCAAG
1 GTGATGTCGAGGAAGCAAG
25838984 GTGATGTCGAGGAAGCAAG
1 GTGATGTCGAGGAAGCAAG
25839003 GT
1 GT
25839005 TCGCCATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.42, T:0.17
Consensus pattern (19 bp):
GTGATGTCGAGGAAGCAAG
Found at i:25839139 original size:100 final size:99
Alignment explanation
Indices: 25838987--25839928 Score: 1050
Period size: 100 Copynumber: 9.4 Consensus size: 99
25838977 AAGCAAGGTG
* * * * *
25838987 ATGTCGAGGAAGCAAGGTTCGCC-ATTGTGGCTTCAATCTGTTCCACTACACTGCCTGGGAAGTA
1 ATGTCGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCA-TGCCTGGGAAGTA
* *
25839051 AGATTCACTGTTGTAGCTTTAATCTTTCTAACTGCA
64 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * * * * * **
25839087 ATATCAGGGAAGCAAGATTCGCCGTTATGGCGTTAATCTGTTCCACTGCACTGCTTAAGAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA-TGCCTGGGAAGTAA
*
25839152 GATTCGCTGTTGTAGCTTTAATATTTTTAACTGCA
65 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * ** *
25839187 ATGTTGGGGAAGCAAGGTTCGCC-ATCGTGGCTTTAATCTACTCCACTGCATCGCCAGAGG-AGT
1 ATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTGTTCCACTGCAT-GCCTG-GGAAGT
* *
25839250 AAGATTCGCTGTTGTGGCTTCAATCTTTTTAACTGCA
63 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* *
25839287 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGTACCGCCTGGGGAA-TA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA-TGCCT-GGGAAGTA
* * *
25839351 AGATTCGCCGTTATAGCTTTAGTCTTTTTAACTGCA
64 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * * ***
25839387 ATGTCAGGGAAGCGAGATTCACTGATGTGGCTTTAATCTGCTCCACTGCATCGCCAAAGAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAT-GCCTGGGAAGTAA
* * *
25839452 GATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCA
65 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * * * *
25839487 ATGTCGGGGAAGCAAGATTCACCGATGTGGCCTTAATCTGCTCCACGGCATCGCCAGGGCAGTAG
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAT-GCCTGGGAAGTAA
* * *
25839552 GATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCA
65 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * * *
25839587 ATATCGGGGAAGTAAGATTCACCGACGTGGCTTTAATCTGATCCACTGCATCGCCTGGGGAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAT-GCCTGGGAAGTAA
* * * *
25839652 GATTTGTTGTTGTAGCTTTAATCTTTTTAAATGAA
65 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
* * * *
25839687 ATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTTGAGAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA-TGCCTGGGAAGTAA
*
25839752 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTA
65 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
** * * *
25839787 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCATTGTATTGCCAGGGAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA-TGCCTGGGAAGTAA
* * * *
25839852 GACTCG-TCGTTGTGGCTTCAATCTTTTTAACTGTA
65 GATTCGCT-GTTGTAGCTTTAATCTTTTTAACTGCA
*
25839887 ATGTCAGGGAAGCAAGATTCACC-ATTGTGGCTTTAATCTGTT
1 ATGTCGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTT
25839929 TCGTTGCATT
Statistics
Matches: 718, Mismatches: 111, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
99 7 0.01
100 706 0.98
101 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (99 bp):
ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATGCCTGGGAAGTAAG
ATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
Found at i:25839540 original size:300 final size:299
Alignment explanation
Indices: 25838987--25839928 Score: 1250
Period size: 300 Copynumber: 3.1 Consensus size: 299
25838977 AAGCAAGGTG
* * * * * *
25838987 ATGTCGAGGAAGCAAGGTTCGCCATTGTGGCTTCAATCTGTTCCACTACACTGCCT-GGGAAGTA
1 ATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGGAA-TA
* * * * * *
25839051 AGATTCACTGTTGTAGCTTTAATCTTTCTAACTGCAATATCAGGGAAGCAAGATTCGCCGTTATG
65 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTG
* *
25839116 GCGTTAATCTGTTCCACTGCACTGCTTAAGAAGTAAGATTCGCTGTTGTAGCTTTAATATTTTTA
130 GCTTTAATCTGTTCCACTGCAC-GCTTAAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTA
* * *
25839181 ACTGCAATGTTGGGGAAGCAAGGTTCGCC-ATCGTGGCTTTAATCTACTCCACTGCATCGCCAGA
194 ACTGCAATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTACTCCACTGCATCGCCAG-
25839245 GG-AGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAACTGCA
257 GGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAACTGCA
*
25839287 ATGTCGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGTACCGCCTGGGGAATA
1 ATGTCGGGGAAGCAAGATTCACC-ATTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGGAATA
* * * * *
25839351 AGATTCGCCGTTATAGCTTTAGTCTTTTTAACTGCAATGTCAGGGAAGCGAGATTCACTGATGTG
65 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTG
* ** * * *
25839416 GCTTTAATCTGCTCCACTGCATCGCCAAAGAAGTAAGATTCGCCGCTGTGGCTTTAATCTTTTTA
130 GCTTTAATCTGTTCCACTGCA-CGCTTAAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTA
* * *
25839481 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCCTTAATCTGCTCCACGGCATCGCCAGGG
194 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCACTGCATCGCCAGGG
* * * * *
25839546 CAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCA
259 AAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAACTGCA
* * * * * *
25839587 ATATCGGGGAAGTAAGATTCACCGA-CGTGGCTTTAATCTGATCCACTGCATCGCCTGGGGAGTA
1 ATGTCGGGGAAGCAAGATTCACC-ATTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGGAATA
* * * *
25839651 AGATTTGTTGTTGTAGCTTTAATCTTTTTAAATGAAATGTC-GGGAAAGCAAGATTCACCGATGT
65 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGG-AAGCAAGATTCACCGATGT
*
25839715 GGCTTTAATCTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTT
129 GGCTTTAATCTGTTCCACTGCA-CGCTTAAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTT
* * * *
25839780 AACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCATTGTATTGCCAGG
193 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCACTGCATCGCCAGG
* *
25839845 GAAGTAAGACTCG-TCGTTGTGGCTTCAATCTTTTTAACTGTA
258 GAAGTAAGATTCGCT-GTTGTGGCTTCAATCTTTTTAACTGCA
*
25839887 ATGTCAGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTT
1 ATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTT
25839929 TCGTTGCATT
Statistics
Matches: 555, Mismatches: 79, Indels: 16
0.85 0.12 0.02
Matches are distributed among these distances:
299 6 0.01
300 540 0.97
301 9 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (299 bp):
ATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGGAATAA
GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGG
CTTTAATCTGTTCCACTGCACGCTTAAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAAC
TGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCACTGCATCGCCAGGGAA
GTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAACTGCA
Found at i:25841788 original size:20 final size:21
Alignment explanation
Indices: 25841757--25841796 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
25841747 TCTTCTTTAC
*
25841757 TCTCTCCTTTTTTCTTTTTCT
1 TCTCTCCTTTTTTCATTTTCT
25841778 TCTCT-CTTTTTTCATTTTC
1 TCTCTCCTTTTTTCATTTTC
25841797 ATTTTGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.70
Consensus pattern (21 bp):
TCTCTCCTTTTTTCATTTTCT
Found at i:25841847 original size:46 final size:50
Alignment explanation
Indices: 25841765--25841866 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 50
25841755 ACTCTCTCCT
*
25841765 TTTTTCTTTTTCTTCTCTCTTTTTTCATTTTCATTTTGACCTTGATTTTAA
1 TTTTTCTTTTTCTTCTCTCTTTGTT-ATTTTCATTTTGACCTTGATTTTAA
** *
25841816 TTTTTCTTTTTCTTCT-T-TTTGTT-TTTT-ATTTTGATTTTGATTTTGA
1 TTTTTCTTTTTCTTCTCTCTTTGTTATTTTCATTTTGACCTTGATTTTAA
25841862 TTTTT
1 TTTTT
25841867 TTTGAGCTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
46 21 0.45
47 4 0.09
49 5 0.11
50 1 0.02
51 16 0.34
ACGTcount: A:0.10, C:0.12, G:0.06, T:0.73
Consensus pattern (50 bp):
TTTTTCTTTTTCTTCTCTCTTTGTTATTTTCATTTTGACCTTGATTTTAA
Found at i:25841853 original size:12 final size:12
Alignment explanation
Indices: 25841832--25841866 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
25841822 TTTTTCTTCT
*
25841832 TTTTGTTTTTTA
1 TTTTGATTTTTA
*
25841844 TTTTGATTTTGA
1 TTTTGATTTTTA
25841856 TTTTGATTTTT
1 TTTTGATTTTT
25841867 TTTGAGCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.77
Consensus pattern (12 bp):
TTTTGATTTTTA
Found at i:25841853 original size:52 final size:51
Alignment explanation
Indices: 25841765--25841865 Score: 139
Period size: 52 Copynumber: 2.0 Consensus size: 51
25841755 ACTCTCTCCT
25841765 TTTTTCTTTTTCTTCTCTCTTTTTTCATTTTCATTTTGACCTTGATTTTAA
1 TTTTTCTTTTTCTTCTCTCTTTTTTCATTTTCATTTTGACCTTGATTTTAA
* * * * **
25841816 TTTTTCTTTTTCTTCTTTTTGTTTTTTATTTTGATTTTGATTTTGATTTT
1 TTTTTCTTTTTCTTCTCTCT-TTTTTCATTTTCATTTTGACCTTGATTTT
25841866 TTTTGAGCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 18 0.42
52 25 0.58
ACGTcount: A:0.10, C:0.12, G:0.06, T:0.72
Consensus pattern (51 bp):
TTTTTCTTTTTCTTCTCTCTTTTTTCATTTTCATTTTGACCTTGATTTTAA
Found at i:25845593 original size:24 final size:24
Alignment explanation
Indices: 25845566--25845617 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
25845556 TTAGTAAGTC
*
25845566 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
25845590 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
25845614 AAAT
1 AAAT
25845618 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:25847563 original size:24 final size:24
Alignment explanation
Indices: 25847536--25847587 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
25847526 TTAGTAAGTC
*
25847536 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
25847560 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
25847584 AAAT
1 AAAT
25847588 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:25850673 original size:54 final size:54
Alignment explanation
Indices: 25850575--25850695 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
25850565 AGGGTTCAAG
* * ** *
25850575 TCAGTGAGTTACATGGCCTAGCACATGGCGTGGTACACTAGCGTG-AGTGGCAAC
1 TCAGTGAGTTACATGGCCTAGCACACGGCCTGACACACGAGCGTGTAG-GGCAAC
* *
25850629 TCAGAGAGTTACATGGCCTAGCACACGGCCTGACACACGGGCGTGTAGGGCAAC
1 TCAGTGAGTTACATGGCCTAGCACACGGCCTGACACACGAGCGTGTAGGGCAAC
*
25850683 TCAGTGGGTTACA
1 TCAGTGAGTTACA
25850696 CGGGTGAGGA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 55 0.96
55 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.31, T:0.20
Consensus pattern (54 bp):
TCAGTGAGTTACATGGCCTAGCACACGGCCTGACACACGAGCGTGTAGGGCAAC
Found at i:25851725 original size:29 final size:29
Alignment explanation
Indices: 25851675--25851730 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
25851665 ATACTATAAT
* *
25851675 AAATCTAAAATATATGATAATTTATAAACA
1 AAATATAAAATATATGA-AAATTATAAACA
25851705 AAATATAAAA-ATATGAAAATTATAAA
1 AAATATAAAATATATGAAAATTATAAA
25851731 GGGACGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 6 0.25
30 9 0.38
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (29 bp):
AAATATAAAATATATGAAAATTATAAACA
Found at i:25852240 original size:14 final size:14
Alignment explanation
Indices: 25852221--25852255 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
25852211 CAGAGTCTAG
25852221 GTTGGTGTTGCTGT
1 GTTGGTGTTGCTGT
*
25852235 GTTGGTTTTGCTGT
1 GTTGGTGTTGCTGT
25852249 GTTGGTG
1 GTTGGTG
25852256 CAACAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.00, C:0.06, G:0.43, T:0.51
Consensus pattern (14 bp):
GTTGGTGTTGCTGT
Found at i:25854157 original size:3 final size:3
Alignment explanation
Indices: 25854151--25854179 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
25854141 TCCTCCTTCT
25854151 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
25854180 TTCTTCTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:25855704 original size:21 final size:21
Alignment explanation
Indices: 25855678--25855718 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25855668 TTAAGAGATA
*
25855678 TTACTTGAATAGTTGTATCTC
1 TTACTTGAATAGTTATATCTC
*
25855699 TTACTTTAATAGTTATATCT
1 TTACTTGAATAGTTATATCT
25855719 ATGTAAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
TTACTTGAATAGTTATATCTC
Found at i:25858688 original size:6 final size:6
Alignment explanation
Indices: 25858662--25858742 Score: 74
Period size: 6 Copynumber: 13.7 Consensus size: 6
25858652 AAGAAGAAGA
* * * * *
25858662 AAAAAT AACAAT AAAAAT AAAAGT AAAAAT AAAAAC AAAAAC AAAAAC
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * * *
25858710 AAAAAC AAAAAC AAAAAC AAAAA- CAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
25858743 CTAGGTAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
5 4 0.06
6 63 0.94
ACGTcount: A:0.81, C:0.10, G:0.01, T:0.07
Consensus pattern (6 bp):
AAAAAT
Found at i:25858692 original size:18 final size:18
Alignment explanation
Indices: 25858686--25858737 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
25858676 AAATAAAAGT
*
25858686 AAAAATAAAAACAAAAAC
1 AAAAACAAAAACAAAAAC
25858704 AAAAACAAAAACAAAAAC
1 AAAAACAAAAACAAAAAC
25858722 AAAAACAAAAACAAAA
1 AAAAACAAAAACAAAA
25858738 TAAAACTAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.02
Consensus pattern (18 bp):
AAAAACAAAAACAAAAAC
Found at i:25858701 original size:12 final size:12
Alignment explanation
Indices: 25858662--25858742 Score: 92
Period size: 12 Copynumber: 6.8 Consensus size: 12
25858652 AAGAAGAAGA
* *
25858662 AAAAATAACAAT
1 AAAAATAAAAAC
**
25858674 AAAAATAAAAGT
1 AAAAATAAAAAC
25858686 AAAAATAAAAAC
1 AAAAATAAAAAC
*
25858698 AAAAACAAAAAC
1 AAAAATAAAAAC
*
25858710 AAAAACAAAAAC
1 AAAAATAAAAAC
*
25858722 AAAAACAAAAAC
1 AAAAATAAAAAC
25858734 -AAAATAAAA
1 AAAAATAAAA
25858743 CTAGGTAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
11 8 0.13
12 55 0.87
ACGTcount: A:0.81, C:0.10, G:0.01, T:0.07
Consensus pattern (12 bp):
AAAAATAAAAAC
Found at i:25860129 original size:12 final size:12
Alignment explanation
Indices: 25860114--25860145 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
25860104 TAAAAAAGGC
25860114 AAATAAAAGATA
1 AAATAAAAGATA
25860126 AAATAAAAGATA
1 AAATAAAAGATA
25860138 AAATAAAA
1 AAATAAAA
25860146 TAAAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (12 bp):
AAATAAAAGATA
Found at i:25860143 original size:5 final size:5
Alignment explanation
Indices: 25860137--25860190 Score: 81
Period size: 5 Copynumber: 10.8 Consensus size: 5
25860127 AATAAAAGAT
* * *
25860137 AAAAT AAAAT AAAAG AAAAT AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
25860187 AAAA
1 AAAA
25860191 CATAGAGGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (5 bp):
AAAAG
Found at i:25860150 original size:10 final size:10
Alignment explanation
Indices: 25860114--25860190 Score: 79
Period size: 10 Copynumber: 7.8 Consensus size: 10
25860104 TAAAAAAGGC
25860114 AAATAAAAGATA
1 AAATAAAAG--A
25860126 AAATAAAAG-
1 AAATAAAAGA
*
25860135 --ATAAAATA
1 AAATAAAAGA
25860143 AAATAAAAGA
1 AAATAAAAGA
25860153 AAATAAAAGA
1 AAATAAAAGA
*
25860163 AAAGAAAAGA
1 AAATAAAAGA
*
25860173 AAAGAAAAGA
1 AAATAAAAGA
*
25860183 AAAGAAAA
1 AAATAAAA
25860191 CATAGAGGAT
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
7 6 0.10
10 44 0.75
12 9 0.15
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (10 bp):
AAATAAAAGA
Found at i:25860157 original size:15 final size:15
Alignment explanation
Indices: 25860123--25860190 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
25860113 CAAATAAAAG
*
25860123 ATAAAATAAAAGATAAA
1 ATAAAAGAAAAG--AAA
*
25860140 ATAAAATAAAAGAAA
1 ATAAAAGAAAAGAAA
25860155 ATAAAAGAAAAGAAA
1 ATAAAAGAAAAGAAA
*
25860170 AGAAAAGAAAAGAAA
1 ATAAAAGAAAAGAAA
*
25860185 AGAAAA
1 ATAAAA
25860191 CATAGAGGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
15 37 0.76
17 12 0.24
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (15 bp):
ATAAAAGAAAAGAAA
Found at i:25871388 original size:9 final size:9
Alignment explanation
Indices: 25871376--25871403 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
25871366 AATTAATTCG
25871376 ATTATAGTT
1 ATTATAGTT
25871385 ATTATAGTT
1 ATTATAGTT
25871394 ATTATAGTT
1 ATTATAGTT
25871403 A
1 A
25871404 GTTAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54
Consensus pattern (9 bp):
ATTATAGTT
Found at i:25871428 original size:35 final size:35
Alignment explanation
Indices: 25871388--25871459 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
25871378 TATAGTTATT
*
25871388 ATAGTTATTATAGTTAGTTAATTAAAGTTCCATAA
1 ATAGTTATTATAGTTAGTTAATTAAAGTACCATAA
25871423 ATAGTTATTATAGTTAGTTAATTAAAGTACCATAA
1 ATAGTTATTATAGTTAGTTAATTAAAGTACCATAA
25871458 AT
1 AT
25871460 TAATTCAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.42
Consensus pattern (35 bp):
ATAGTTATTATAGTTAGTTAATTAAAGTACCATAA
Found at i:25871832 original size:13 final size:13
Alignment explanation
Indices: 25871814--25871839 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25871804 TAAGTTGGAA
25871814 AAATACAAAAGTG
1 AAATACAAAAGTG
25871827 AAATACAAAAGTG
1 AAATACAAAAGTG
25871840 GGAGTTTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15
Consensus pattern (13 bp):
AAATACAAAAGTG
Found at i:25872404 original size:21 final size:21
Alignment explanation
Indices: 25872378--25872491 Score: 140
Period size: 21 Copynumber: 5.4 Consensus size: 21
25872368 AACAAGATCG
25872378 TCAAGGAGTCCATCGTCATCA
1 TCAAGGAGTCCATCGTCATCA
* **
25872399 TCAAGGAGTCCA-CAGTTATTT
1 TCAAGGAGTCCATC-GTCATCA
* *
25872420 TCAAGGAGTCCATCATCATCG
1 TCAAGGAGTCCATCGTCATCA
* *
25872441 TCAAGGACTCCATCATCATCA
1 TCAAGGAGTCCATCGTCATCA
*
25872462 TCAAGGAGTCCATCGTCATCG
1 TCAAGGAGTCCATCGTCATCA
25872483 TCAAGGAGT
1 TCAAGGAGT
25872492 TCGTCTTCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
20 1 0.01
21 77 0.97
22 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (21 bp):
TCAAGGAGTCCATCGTCATCA
Found at i:25872439 original size:42 final size:42
Alignment explanation
Indices: 25872378--25872491 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 42
25872368 AACAAGATCG
* * **
25872378 TCAAGGAGTCCATCGTCATCATCAAGGAGTCCA-CAGTTATTT
1 TCAAGGAGTCCATCGTCATCGTCAAGGAGTCCATCA-TCATCA
* *
25872420 TCAAGGAGTCCATCATCATCGTCAAGGACTCCATCATCATCA
1 TCAAGGAGTCCATCGTCATCGTCAAGGAGTCCATCATCATCA
25872462 TCAAGGAGTCCATCGTCATCGTCAAGGAGT
1 TCAAGGAGTCCATCGTCATCGTCAAGGAGT
25872492 TCGTCTTCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 61 0.97
43 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
TCAAGGAGTCCATCGTCATCGTCAAGGAGTCCATCATCATCA
Found at i:25872779 original size:15 final size:16
Alignment explanation
Indices: 25872759--25872794 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
25872749 ATATTGTAAT
25872759 AAGAAC-GTGAAAGAA
1 AAGAACAGTGAAAGAA
*
25872774 AAGAACATTGAAAGAA
1 AAGAACAGTGAAAGAA
25872790 AAGAA
1 AAGAA
25872795 AGGCAAGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.64, C:0.06, G:0.22, T:0.08
Consensus pattern (16 bp):
AAGAACAGTGAAAGAA
Found at i:25876725 original size:13 final size:13
Alignment explanation
Indices: 25876707--25876744 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
25876697 AGTTCTTTAT
25876707 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
25876720 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
25876733 TGCTTTTGAGAA
1 TGCTTTTGAGAA
25876745 ATTTAAGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.29, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:25878981 original size:72 final size:72
Alignment explanation
Indices: 25878819--25878955 Score: 238
Period size: 72 Copynumber: 1.9 Consensus size: 72
25878809 ATAATTTAGT
*
25878819 ATAAATAAGTAGAACATAAATTCAATATCCAAAGACCAAACATAAACAACTATTAATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
25878884 ATTACAC
66 ATTACAC
* * *
25878891 ATAAATAAGTAGAACATAAATTCAATGTCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
25878956 TTTAGCATTG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.55, C:0.15, G:0.07, T:0.23
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
ATTACAC
Found at i:25879364 original size:18 final size:18
Alignment explanation
Indices: 25879310--25879357 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
25879300 CCCATCAATT
* *
25879310 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATA
25879328 TGAACATCATTTAAAATA
1 TGAACATCATTTAAAATA
25879346 TGAACATCATTT
1 TGAACATCATTT
25879358 CTCATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATA
Found at i:25884368 original size:138 final size:136
Alignment explanation
Indices: 25884113--25884369 Score: 286
Period size: 138 Copynumber: 1.9 Consensus size: 136
25884103 GGTCTGCTCA
* *
25884113 CACAAGCTGACAGTCAAAATGTAGCTACACGATGTCGCTCACACAAGCTGACGAGTATCCGCAAC
1 CACAAGCTGACAGTCAAAATGTAGCTACACAATGTCGCTCACACAAGCTGACGAGTATCCGAAAC
** * * * **
25884178 AAATGTTGGAACTCAGCCATCGGTAGGACATTCAAGACCAGCACCCTCAACATGGTAACCTGGGT
66 AAATG-TCCAACTAAGCCATCGGTAGAACATTCAAGACCAGAACCCAAAACATGGTAACCTGGGT
25884243 CTACTAT
130 CTACTAT
** * * *
25884250 CACAAGCTGACAGTCGGAATGTAAGCTACACAATG-CTGCTTACACAAGTTGATGAGTATCCGAA
1 CACAAGCTGACAGTCAAAATGT-AGCTACACAATGTC-GCTCACACAAGCTGACGAGTATCCGAA
* * *
25884314 ACAAATG-CCAAGCCTAAGGCATTGGTAGAACATTC-AGAACCGGAACCCAAAACATG
64 ACAAATGTCCAA--CTAAGCCATCGGTAGAACATTCAAG-ACCAGAACCCAAAACATG
25884370 AAAACCGTAA
Statistics
Matches: 98, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
136 2 0.02
137 23 0.23
138 73 0.74
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (136 bp):
CACAAGCTGACAGTCAAAATGTAGCTACACAATGTCGCTCACACAAGCTGACGAGTATCCGAAAC
AAATGTCCAACTAAGCCATCGGTAGAACATTCAAGACCAGAACCCAAAACATGGTAACCTGGGTC
TACTAT
Found at i:25890677 original size:5 final size:5
Alignment explanation
Indices: 25890667--25890702 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
25890657 TTTAACTAAC
25890667 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA
25890703 GTACCAATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:25892831 original size:17 final size:16
Alignment explanation
Indices: 25892802--25892842 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
25892792 ACATATGTTA
*
25892802 TTTCTTCTTCTTCATTTT
1 TTTCTT-TTCTTC-TCTT
25892820 TTTCTTTTCTTCTCTT
1 TTTCTTTTCTTCTCTT
25892836 TTTCTTT
1 TTTCTTT
25892843 CATGAGCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
17 6 0.27
18 6 0.27
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTTTTCTTCTCTT
Found at i:25893663 original size:16 final size:16
Alignment explanation
Indices: 25893642--25893675 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25893632 GAAAAACAAA
*
25893642 AATCCTAATAGAACCT
1 AATCCTAACAGAACCT
*
25893658 AATCCTAACATAACCT
1 AATCCTAACAGAACCT
25893674 AA
1 AA
25893676 GAAAGGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (16 bp):
AATCCTAACAGAACCT
Found at i:25899551 original size:39 final size:40
Alignment explanation
Indices: 25899434--25899657 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
25899424 GCTACTCGTT
* * *
25899434 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
25899474 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
25899514 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
25899553 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
25899592 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
25899633 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25899658 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 76 0.46
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:25899611 original size:79 final size:80
Alignment explanation
Indices: 25899434--25899657 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 80
25899424 GCTACTCGTT
* * *
25899434 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
25899498 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * *
25899514 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
25899577 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * * *
25899592 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAGCCCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
25899655 GGA
64 GGA
25899658 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 37 0.30
79 56 0.45
80 31 0.25
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:25902673 original size:50 final size:53
Alignment explanation
Indices: 25902566--25902680 Score: 164
Period size: 56 Copynumber: 2.2 Consensus size: 53
25902556 ATTTGGGTAA
*
25902566 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-TGAG--TATG
*
25902622 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-C-TGAG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGTATG
25902672 AGAGGTCCC
1 AGAGGTCCC
25902681 CCATAGACAT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
50 12 0.21
53 4 0.07
55 1 0.02
56 40 0.70
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (53 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGTATG
Found at i:25912846 original size:9 final size:9
Alignment explanation
Indices: 25912832--25912863 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
25912822 TAAGGTTTAG
25912832 TATGGTTAA
1 TATGGTTAA
25912841 TATGGTTAA
1 TATGGTTAA
*
25912850 TAAGGTTAA
1 TATGGTTAA
25912859 TATGG
1 TATGG
25912864 AGTCTAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (9 bp):
TATGGTTAA
Found at i:25913412 original size:16 final size:16
Alignment explanation
Indices: 25913388--25913419 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25913378 ATATTGATAC
*
25913388 AAAATTTTGAAAATTT
1 AAAAGTTTGAAAATTT
25913404 AAAAGTTTGAAAATTT
1 AAAAGTTTGAAAATTT
25913420 TACAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAAGTTTGAAAATTT
Found at i:25916254 original size:21 final size:21
Alignment explanation
Indices: 25916209--25916254 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
25916199 CACGGCTGGA
* * *
25916209 CACACGGGCATCTGGGACAGT
1 CACACAGGCATATGGGACAGC
*
25916230 CACACAGGCATATGGGATAGC
1 CACACAGGCATATGGGACAGC
25916251 CACA
1 CACA
25916255 TGACCATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.13
Consensus pattern (21 bp):
CACACAGGCATATGGGACAGC
Found at i:25919408 original size:21 final size:22
Alignment explanation
Indices: 25919375--25919415 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
25919365 CAATTTCTCA
* *
25919375 ATCCAATATATATATTTCAATC
1 ATCCAAGATATATAATTCAATC
25919397 ATCCAAGA-ATATAATTCAA
1 ATCCAAGATATATAATTCAA
25919416 GTTACATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.34
Consensus pattern (22 bp):
ATCCAAGATATATAATTCAATC
Found at i:25922961 original size:50 final size:49
Alignment explanation
Indices: 25922885--25923114 Score: 298
Period size: 50 Copynumber: 4.6 Consensus size: 49
25922875 TTTTCTGTAC
* * * * *
25922885 TGCCAATGCCATATCGCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-TTCTCATATCGG
* * ** * *
25922935 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-TTCTCATATCGG
*
25922985 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAT-TCTCATATCGG
* *
25923035 TGCCAACGCCATGTCCCCAGACATGGTCTTACATGGGACTCTCATCTCGG
1 TGCCAACGCCATGT-CCCAGACATGGTCTTACATGGGATTCTCATATCGG
25923085 TGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTA
25923115 TACGAGATCG
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
49 16 0.10
50 121 0.76
51 22 0.14
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATTCTCATATCGG
Found at i:25923016 original size:100 final size:100
Alignment explanation
Indices: 25922885--25923114 Score: 338
Period size: 100 Copynumber: 2.3 Consensus size: 100
25922875 TTTTCTGTAC
* * * * * * * *
25922885 TGCCAATGCCATATCGCAGATATGGTCTTACATGGGAGT-TCTCATATTGGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGA-TCTCTCATATCGGTGCCAACGCCATGT
*
25922949 -CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
65 CCCCAGACATGGTCTTACAGGGGA-CTCTCATCTCGG
25922985 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
*
25923050 CCCAGACATGGTCTTACATGGGACTCTCATCTCGG
66 CCCAGACATGGTCTTACAGGGGACTCTCATCTCGG
25923085 TGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTA
25923115 TACGAGATCG
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
99 1 0.01
100 96 0.81
101 21 0.18
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (100 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
CCCAGACATGGTCTTACAGGGGACTCTCATCTCGG
Found at i:25924843 original size:40 final size:40
Alignment explanation
Indices: 25924798--25925022 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
25924788 CTTGCGCAAG
* * *
25924798 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25924838 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
25924878 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25924918 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
25924958 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
25924999 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
25925023 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:25926780 original size:38 final size:39
Alignment explanation
Indices: 25926709--25926792 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 39
25926699 TGCGCAGAGG
* *
25926709 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAG-CAAAT
1 GCCTTCGGGACTTAGCCCGGATATGGTCACTAGACAAAT
*
25926747 GCCTTCGGGACTTAGCCCGGATATAGGT-GCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATAT-GGTCACTAG-ACAAAT
25926787 GCCTTC
1 GCCTTC
25926793 CGGGGTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
38 26 0.65
39 3 0.08
40 11 0.28
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATGGTCACTAGACAAAT
Found at i:25936941 original size:40 final size:40
Alignment explanation
Indices: 25936895--25937119 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
25936885 CTTGCGCAAG
* * *
25936895 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25936935 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
25936975 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25937015 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
25937055 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
25937096 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
25937120 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:25936990 original size:80 final size:80
Alignment explanation
Indices: 25936859--25937119 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
25936849 TCAAGTAAAT
* * * * * * * *
25936859 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
25936922 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
25936937 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
25937001 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
25937017 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
25937082 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
25937098 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
25937120 CATTCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:25939693 original size:12 final size:12
Alignment explanation
Indices: 25939674--25939705 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25939664 AATTATCCGC
25939674 TCGGTTTGACCA
1 TCGGTTTGACCA
*
25939686 TTGGTTTGACCA
1 TCGGTTTGACCA
25939698 TCGGTTTG
1 TCGGTTTG
25939706 TGGATGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.28, T:0.41
Consensus pattern (12 bp):
TCGGTTTGACCA
Found at i:25945114 original size:40 final size:40
Alignment explanation
Indices: 25945068--25945292 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
25945058 CTTGCGCAAG
* * *
25945068 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25945108 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
25945148 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25945188 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
25945228 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
25945269 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
25945293 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:25945163 original size:80 final size:80
Alignment explanation
Indices: 25945032--25945292 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
25945022 CTCAAGTAAT
* * * * * * * *
25945032 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
25945095 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
25945110 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
25945174 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
25945190 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
25945255 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
25945271 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
25945293 CATTCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:25951455 original size:18 final size:18
Alignment explanation
Indices: 25951432--25951468 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
25951422 TTGAGTGTTC
25951432 TTTGACAACTCAATCCTA
1 TTTGACAACTCAATCCTA
25951450 TTTGACAACTCAATCCTA
1 TTTGACAACTCAATCCTA
25951468 T
1 T
25951469 CTTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (18 bp):
TTTGACAACTCAATCCTA
Found at i:25952812 original size:16 final size:16
Alignment explanation
Indices: 25952772--25952805 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25952762 AAAATTTTTG
*
25952772 AAAAAGAATTATTTTAT
1 AAAAA-AATTATTTAAT
25952789 AAAAAAATTATTTAAT
1 AAAAAAATTATTTAAT
25952805 A
1 A
25952806 TGAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAAAAATTATTTAAT
Found at i:25954019 original size:52 final size:52
Alignment explanation
Indices: 25953936--25954037 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
25953926 ATGCTTTAGC
* *
25953936 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATGCCCATGTCAATCAGT
1 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCAGT
* * * *
25953988 ACACTTGAACTTAGGTCTTTTTACATTGACAACAATACTCATATCAATCA
1 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCA
25954038 AGCTAAAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (52 bp):
ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCAGT
Found at i:25957917 original size:16 final size:16
Alignment explanation
Indices: 25957898--25957930 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25957888 CTTGCAATTC
25957898 GACAGGCTCACACTTT
1 GACAGGCTCACACTTT
*
25957914 GACAGGCTCGCACTTT
1 GACAGGCTCACACTTT
25957930 G
1 G
25957931 CTTACTGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (16 bp):
GACAGGCTCACACTTT
Found at i:25958117 original size:25 final size:25
Alignment explanation
Indices: 25958089--25958173 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
25958079 CTGAGCTCAT
* *
25958089 AGCTCGCACTTCTCGCTAAGCTTGC
1 AGCTTGCACTTCTTGCTAAGCTTGC
*
25958114 AGCTTTG-ACATCTTGCTAAGCTTGC
1 AGC-TTGCACTTCTTGCTAAGCTTGC
* *
25958139 AGCTTGCACATTTTTGCTGAGCTTGC
1 AGCTTGCAC-TTCTTGCTAAGCTTGC
25958165 AGCTTGCAC
1 AGCTTGCAC
25958174 ATTGGAAAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 3 0.06
25 24 0.47
26 24 0.47
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.33
Consensus pattern (25 bp):
AGCTTGCACTTCTTGCTAAGCTTGC
Found at i:25958162 original size:26 final size:26
Alignment explanation
Indices: 25958089--25958176 Score: 110
Period size: 26 Copynumber: 3.5 Consensus size: 26
25958079 CTGAGCTCAT
* *
25958089 AGCTCGCAC-TTCTCGCTAAGCTTGC
1 AGCTTGCACATTCTTGCTAAGCTTGC
25958114 AGCTTTG-ACA-TCTTGCTAAGCTTGC
1 AGC-TTGCACATTCTTGCTAAGCTTGC
* *
25958139 AGCTTGCACATTTTTGCTGAGCTTGC
1 AGCTTGCACATTCTTGCTAAGCTTGC
25958165 AGCTTGCACATT
1 AGCTTGCACATT
25958177 GGAAAGCTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.05
25 25 0.45
26 27 0.49
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.34
Consensus pattern (26 bp):
AGCTTGCACATTCTTGCTAAGCTTGC
Found at i:25958329 original size:65 final size:65
Alignment explanation
Indices: 25958259--25958380 Score: 208
Period size: 65 Copynumber: 1.9 Consensus size: 65
25958249 GAGTTGATGC
* *
25958259 TGTCTTTTCTACAAGCAGTCCTTAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
1 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
**
25958324 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACATTTTCTTTCTT
1 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTT
25958381 TTTAACAAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.46
Consensus pattern (65 bp):
TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
Found at i:25959111 original size:4 final size:4
Alignment explanation
Indices: 25959099--25959149 Score: 84
Period size: 4 Copynumber: 12.8 Consensus size: 4
25959089 CATATATATA
* *
25959099 TATG CATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TGTG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
25959147 TAT
1 TAT
25959150 ATATATTAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.24, C:0.02, G:0.25, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:25961227 original size:34 final size:34
Alignment explanation
Indices: 25961180--25961254 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
25961170 TTGTTTTTAA
* * *
25961180 TAGGGTTAGGGTTTTGTTTATTGAAATTAGGATT
1 TAGGGTTAAGGTTTTATTTATTGAAAGTAGGATT
* *
25961214 TAGGGTTAAGGTTTTATTTATTTAAAGTAGGGTT
1 TAGGGTTAAGGTTTTATTTATTGAAAGTAGGATT
25961248 TAGGGTT
1 TAGGGTT
25961255 TTTTTAGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (34 bp):
TAGGGTTAAGGTTTTATTTATTGAAAGTAGGATT
Found at i:25964437 original size:25 final size:24
Alignment explanation
Indices: 25964347--25964438 Score: 71
Period size: 24 Copynumber: 3.8 Consensus size: 24
25964337 TCATTAGGGA
25964347 TTACCGATTACAGCTCGTATGAA-C
1 TTACCGATTACAGCTCGTAT-AAGC
* * * *
25964371 ATACTGATTACAGCTCGTGA-GAGT
1 TTACCGATTACAGCTCGT-ATAAGC
* * *
25964395 TTACAGATTCTCAACTCGTATAAGC
1 TTACCGATT-ACAGCTCGTATAAGC
25964420 TTACCGATTTACAGCTCGT
1 TTACCGA-TTACAGCTCGT
25964439 GAGAGCATAT
Statistics
Matches: 50, Mismatches: 13, Indels: 9
0.69 0.18 0.12
Matches are distributed among these distances:
23 1 0.02
24 24 0.48
25 23 0.46
26 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
TTACCGATTACAGCTCGTATAAGC
Found at i:25964452 original size:25 final size:25
Alignment explanation
Indices: 25964351--25964472 Score: 76
Period size: 25 Copynumber: 5.0 Consensus size: 25
25964341 TAGGGATTAC
*
25964351 CGATT-ACAGCTCGTATGAACATA-
1 CGATTCACAGCTCGTATGAGCATAT
**
25964374 CTGATT-ACAGCTCGTGA-GAGTTTA-
1 C-GATTCACAGCTCGT-ATGAGCATAT
* * * * *
25964398 CAGATTCTCAACTCGTATAAGCTTAC
1 C-GATTCACAGCTCGTATGAGCATAT
*
25964424 CGATTTACAGCTCGTGA-GAGCATAT
1 CGATTCACAGCTCGT-ATGAGCATAT
*
25964449 CGATTCATAGCTCGTATGAGCATA
1 CGATTCACAGCTCGTATGAGCATA
25964473 CATGTACAGG
Statistics
Matches: 76, Mismatches: 16, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
23 1 0.01
24 24 0.32
25 49 0.64
26 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (25 bp):
CGATTCACAGCTCGTATGAGCATAT
Found at i:25971846 original size:22 final size:22
Alignment explanation
Indices: 25971802--25971846 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25971792 GGTAATATTT
*
25971802 CCAAAAATATGTTTTTGACTAA
1 CCAAAAATATGTTTTCGACTAA
*
25971824 CCAAAAATATGTTTTCGATTAA
1 CCAAAAATATGTTTTCGACTAA
25971846 C
1 C
25971847 TTGAATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (22 bp):
CCAAAAATATGTTTTCGACTAA
Found at i:25972197 original size:25 final size:25
Alignment explanation
Indices: 25972169--25972296 Score: 104
Period size: 25 Copynumber: 5.2 Consensus size: 25
25972159 TAGCTGGTGA
25972169 GAGCTTACCGATTCTCAGCTCGTAT
1 GAGCTTACCGATTCTCAGCTCGTAT
* * * *
25972194 GAGCATATCGATT-GCAGCTTGTGA-
1 GAGCTTACCGATTCTCAGCTCGT-AT
* *
25972218 GAGCTTACCAATTCTCAGCTTGTAT
1 GAGCTTACCGATTCTCAGCTCGTAT
25972243 GAGCTTACCGATT-TACAGCTCGTGA-
1 GAGCTTACCGATTCT-CAGCTCGT-AT
* * *
25972268 GAGCATATCGATTCAT-AGCTAGTAT
1 GAGCTTACCGATTC-TCAGCTCGTAT
25972293 GAGC
1 GAGC
25972297 ATACATGTAC
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
24 20 0.24
25 60 0.73
26 1 0.01
27 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
GAGCTTACCGATTCTCAGCTCGTAT
Found at i:25972226 original size:49 final size:49
Alignment explanation
Indices: 25972154--25972300 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 49
25972144 AGGGATTACT
* * * *
25972154 GATTGTAGCTGGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCATATC
1 GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
* * * *
25972203 GATTGCAGCTTGTGAGAGCTTACCAATTCTCAGCTTGTATGAGCTTACC
1 GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
* * *
25972252 GATTTACAGCTCGTGAGAGCATATCGATTCAT-AGCTAGTATGAGCATAC
1 GA-TTGCAGCTCGTGAGAGCTTACCGATTC-TCAGCTAGTATGAGCATAC
25972301 ATGTACAGGA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 45 0.54
50 37 0.45
51 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (49 bp):
GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
Found at i:25977247 original size:76 final size:78
Alignment explanation
Indices: 25977076--25977251 Score: 223
Period size: 76 Copynumber: 2.3 Consensus size: 78
25977066 AAATTATATA
* * * *
25977076 AATTGAATT-AAAGTTATGAATTTTATATATTTATATGTGAGGTTCGAATATATATGTATATACA
1 AATTGAATTAAAAG-TATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACA
* * *
25977140 TGTATAAGTTCTTG
65 TATACAAGTACTTG
* * *
25977154 AATTAAATTAAAGGTATGAATTTTACATATGTATATGTGTGATTCG-A-ATAGATGTATATACAT
1 AATTGAATTAAAAGTATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACAT
25977217 ATACAAGTACTTG
66 ATACAAGTACTTG
*
25977230 AGTTGAATTAAAAGTATGAATT
1 AATTGAATTAAAAGTATGAATT
25977252 GTAAATACTT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
76 44 0.52
77 1 0.01
78 36 0.43
79 3 0.04
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (78 bp):
AATTGAATTAAAAGTATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACAT
ATACAAGTACTTG
Found at i:25977647 original size:31 final size:30
Alignment explanation
Indices: 25977611--25977756 Score: 143
Period size: 31 Copynumber: 4.6 Consensus size: 30
25977601 GATAAGTATT
25977611 TATATGCATTCGGTTATATACCTTTGATGTG
1 TATATGCATTCGGTTATATA-CTTTGATGTG
* *
25977642 TATATGCATTCGATTATAAGTA-TTTGATAGGTA
1 TATATGCATTCGGTTAT-A-TACTTTGAT--GTG
*
25977675 TATATGCATTCGGTTGTATACATTTGATGTG
1 TATATGCATTCGGTTATATAC-TTTGATGTG
* *
25977706 TATATGCATTCGGTTATAAGTA-GTTGATAAGTA
1 TATATGCATTCGGTTAT-A-TACTTTGAT--GTG
25977739 TATATGCATTCGGTTATA
1 TATATGCATTCGGTTATA
25977757 AGTATTTGAT
Statistics
Matches: 97, Mismatches: 8, Indels: 19
0.78 0.06 0.15
Matches are distributed among these distances:
31 47 0.48
32 4 0.04
33 46 0.47
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (30 bp):
TATATGCATTCGGTTATATACTTTGATGTG
Found at i:25977683 original size:64 final size:64
Alignment explanation
Indices: 25977596--25977756 Score: 259
Period size: 64 Copynumber: 2.5 Consensus size: 64
25977586 ATTTATATCT
*
25977596 TATTTGATAAGTATTTATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAA
1 TATTTGATAAGTA--TATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
25977661 G
64 G
* * *
25977662 TATTTGATAGGTATATATGCATTCGGTTGTATACATTTGATGTGTATATGCATTCGGTTATAAG
1 TATTTGATAAGTATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAAG
*
25977726 TAGTTGATAAGTATATATGCATTCGGTTATA
1 TATTTGATAAGTATATATGCATTCGGTTATA
25977757 AGTATTTGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
64 76 0.86
66 12 0.14
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (64 bp):
TATTTGATAAGTATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAAG
Found at i:25977684 original size:33 final size:32
Alignment explanation
Indices: 25977596--25977771 Score: 182
Period size: 33 Copynumber: 5.4 Consensus size: 32
25977586 ATTTATATCT
25977596 TATTTGATAAGTATTTATATGCATTCGGTTAT-A-
1 TATTTGAT-AGTA--TATATGCATTCGGTTATAAG
* *
25977629 TACCTTTGAT-GTGTATATGCATTCGATTATAAG
1 TA--TTTGATAGTATATATGCATTCGGTTATAAG
*
25977662 TATTTGATAGGTATATATGCATTCGGTTGTATA-
1 TATTTGATA-GTATATATGCATTCGGTTATA-AG
* *
25977695 CATTTGAT-GTGTATATGCATTCGGTTATAAG
1 TATTTGATAGTATATATGCATTCGGTTATAAG
*
25977726 TAGTTGATAAGTATATATGCATTCGGTTATAAG
1 TATTTGAT-AGTATATATGCATTCGGTTATAAG
25977759 TATTTGATGAGTA
1 TATTTGAT-AGTA
25977772 GATACATACA
Statistics
Matches: 120, Mismatches: 13, Indels: 20
0.78 0.08 0.13
Matches are distributed among these distances:
30 1 0.01
31 47 0.39
32 1 0.01
33 64 0.53
34 1 0.01
35 6 0.05
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (32 bp):
TATTTGATAGTATATATGCATTCGGTTATAAG
Found at i:25986215 original size:91 final size:91
Alignment explanation
Indices: 25986077--25986284 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
25986067 TTGATTTTAG
* *
25986077 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
25986142 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
25986169 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
25986234 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
25986260 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
25986285 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:25986253 original size:26 final size:28
Alignment explanation
Indices: 25986199--25986259 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
25986189 TATTATCAAG
* *
25986199 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
25986227 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
25986253 AATTATA
1 AATTATA
25986260 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:25986259 original size:44 final size:43
Alignment explanation
Indices: 25986117--25986259 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
25986107 GAATTTTATG
* *
25986117 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
25986161 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
25986208 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
25986252 AAATTATA
1 AAATTATA
25986260 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:25986377 original size:59 final size:57
Alignment explanation
Indices: 25986311--25986499 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
25986301 ATTTTATTAA
25986311 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
25986370 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
25986431 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
25986490 ATCATATATT
1 ATCATATATT
25986500 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 22 0.22
60 4 0.04
61 12 0.12
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:25986408 original size:66 final size:64
Alignment explanation
Indices: 25986338--25986536 Score: 177
Period size: 66 Copynumber: 3.2 Consensus size: 64
25986328 AAATATATTT
25986338 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
25986403 G
64 G
* * * * * **
25986404 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTA-ATTA-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAG
* * *
25986458 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
25986523 G
64 G
*
25986524 AATATTGATTATT
1 AATATTAATTATT
25986537 AAGAATTTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 29
0.68 0.13 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 12 0.12
60 4 0.04
61 11 0.11
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAG
Found at i:25986424 original size:120 final size:120
Alignment explanation
Indices: 25986300--25986597 Score: 508
Period size: 120 Copynumber: 2.5 Consensus size: 120
25986290 AATTATTTTA
* * *
25986300 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
*
25986364 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
25986420 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
25986485 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
25986540 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
25986598 ATGATTAAAT
Statistics
Matches: 167, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 160 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:25986440 original size:61 final size:61
Alignment explanation
Indices: 25986373--25986560 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
25986363 TTATAGTATC
25986373 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
25986434 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA-T-TT-A-TATTTTA-TAGTATC
1 ATATATTATGATTTTAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* *
25986493 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
25986554 ATATATT
1 ATATATT
25986561 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 30 0.32
60 14 0.15
61 38 0.40
62 3 0.03
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:25986460 original size:15 final size:15
Alignment explanation
Indices: 25986425--25986476 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
25986415 TTAAGAATTT
*
25986425 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25986439 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25986453 TATTTAATAATAAT-
1 TATTTAATTATAATA
25986467 TATGTTAATT
1 TAT-TTAATT
25986477 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25986557 original size:59 final size:58
Alignment explanation
Indices: 25986374--25986557 Score: 155
Period size: 59 Copynumber: 3.1 Consensus size: 58
25986364 TATAGTATCA
*
25986374 TATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
25986433 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 TATATTATGATTTAAGTA-AAT-TCATATAAGAAT-ATTA--TT-ATTAAGAATTTTATTA-AAT
*
25986492 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
25986553 TATAT
1 TATAT
25986558 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 9 0.09
59 19 0.20
60 8 0.08
61 14 0.15
62 9 0.09
63 12 0.13
64 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:25986569 original size:18 final size:17
Alignment explanation
Indices: 25986541--25986575 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25986531 ATTATTAAGA
*
25986541 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25986558 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25986576 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25986826 original size:45 final size:44
Alignment explanation
Indices: 25986743--25986833 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
25986733 ACCTCTATTC
* *
25986743 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
25986787 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
25986832 CA
1 CA
25986834 CCTCTATTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:25986833 original size:16 final size:16
Alignment explanation
Indices: 25986812--25986855 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
25986802 TTGATTTGCT
*
25986812 ATTACACATCTATTCC
1 ATTACACCTCTATTCC
25986828 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
25986844 ATTACACCTCTA
1 ATTACACCTCTA
25986856 ATCTAATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.30, C:0.34, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:25986865 original size:16 final size:16
Alignment explanation
Indices: 25986814--25986865 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
25986804 GATTTGCTAT
* * *
25986814 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
* *
25986830 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
*
25986846 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
25986862 TACA
1 TACA
25986866 GTGAATTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:25987272 original size:19 final size:18
Alignment explanation
Indices: 25987248--25987340 Score: 54
Period size: 20 Copynumber: 5.2 Consensus size: 18
25987238 ATTACAAAAT
*
25987248 AATTCAAAATAATTTTTAA
1 AATTCAAAAT-ATTTATAA
*
25987267 AATTCAGAATATTTATAAAA
1 AATTCAAAATATTTAT--AA
*
25987287 AATT-AAAA-A-TTAAAA
1 AATTCAAAATATTTATAA
*
25987302 AATTAAAAATATATATATAA
1 AATTCAAAATAT-T-TATAA
25987322 AAGTT-AAAAT-TTTA-AA
1 AA-TTCAAAATATTTATAA
25987338 AAT
1 AAT
25987341 GTTCTAAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
15 7 0.11
16 8 0.13
17 6 0.10
18 7 0.11
19 14 0.23
20 17 0.28
21 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
AATTCAAAATATTTATAA
Found at i:25987285 original size:18 final size:19
Alignment explanation
Indices: 25987248--25987286 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25987238 ATTACAAAAT
*
25987248 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
25987267 AATTCAGAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
25987285 AA
1 AA
25987287 AATTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:25987295 original size:8 final size:8
Alignment explanation
Indices: 25987282--25987310 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
25987272 AGAATATTTA
25987282 TAAAAAAT
1 TAAAAAAT
25987290 T-AAAAAT
1 TAAAAAAT
25987297 TAAAAAAT
1 TAAAAAAT
25987305 TAAAAA
1 TAAAAA
25987311 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
TAAAAAAT
Found at i:25987302 original size:15 final size:15
Alignment explanation
Indices: 25987282--25987311 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25987272 AGAATATTTA
25987282 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
25987297 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
25987312 ATATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAAAATTAAAAAT
Found at i:25987305 original size:35 final size:36
Alignment explanation
Indices: 25987265--25987340 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
25987255 AATAATTTTT
* * *
25987265 AAAATTCAGAATATTTATA-AAAAATTAAAAATTAA
1 AAAATTAAAAATATATATATAAAAATTAAAAATTAA
* * *
25987300 AAAATTAAAAATATATATATAAAAGTTAAAATTTTA
1 AAAATTAAAAATATATATATAAAAATTAAAAATTAA
25987336 AAAAT
1 AAAAT
25987341 GTTCTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 16 0.47
36 18 0.53
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (36 bp):
AAAATTAAAAATATATATATAAAAATTAAAAATTAA
Found at i:25992697 original size:7 final size:7
Alignment explanation
Indices: 25992685--25992710 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25992675 TAGTCGATTG
25992685 GTATTTA
1 GTATTTA
25992692 GTATTTA
1 GTATTTA
25992699 GTATTTA
1 GTATTTA
25992706 GTATT
1 GTATT
25992711 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Done.