Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 89 of 207
Found at i:25993388 original size:18 final size:18
Alignment explanation
Indices: 25993361--25993400 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
25993351 CAGGTGCGTT
*
25993361 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
25993379 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
25993397 TCCT
1 TCCT
25993401 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:25993857 original size:25 final size:25
Alignment explanation
Indices: 25993829--25993945 Score: 113
Period size: 25 Copynumber: 4.9 Consensus size: 25
25993819 TATTTTGATA
25993829 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
25993854 TTATTTGAAGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
* ** *
25993879 TT-TTTTA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
*
25993897 ATTATTTGATATAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
25993923 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
25993946 TTTTTTTTAG
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.01
19 3 0.04
20 7 0.10
21 2 0.03
23 3 0.04
24 7 0.10
25 48 0.67
26 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:25993901 original size:69 final size:69
Alignment explanation
Indices: 25993819--25993989 Score: 315
Period size: 69 Copynumber: 2.5 Consensus size: 69
25993809 ATATTTTGAA
25993819 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
25993884 TAGT
66 TAGT
* * *
25993888 TATTTTGATATTATTTGATATAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAATTTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
25993953 TAGT
66 TAGT
25993957 TATTTTGATATTATTTGATGTAATAAAATAGAA
1 TATTTTGATATTATTTGATGTAATAAAATAGAA
25993990 ATTTTTGAAT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 98 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (69 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
TAGT
Found at i:25994006 original size:9 final size:9
Alignment explanation
Indices: 25993992--25994028 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
25993982 AAATAGAAAT
25993992 TTTTGAATA
1 TTTTGAATA
25994001 TTTTGAATA
1 TTTTGAATA
25994010 TTTTGAATA
1 TTTTGAATA
25994019 TTTTG-ATA
1 TTTTGAATA
25994027 TT
1 TT
25994029 ATTTGAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:25994108 original size:37 final size:37
Alignment explanation
Indices: 25994067--25994138 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
25994057 CCTTAACTTA
* *
25994067 AAAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AAAACCCTAACCTAATTAAATAAAAAACCCTAACCCT
25994104 AAAACCCTAACCTAATTAAATAAAAAACCCTAACC
1 AAAACCCTAACCTAATTAAATAAAAAACCCTAACC
25994139 TAATTTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (37 bp):
AAAACCCTAACCTAATTAAATAAAAAACCCTAACCCT
Found at i:25994131 original size:23 final size:23
Alignment explanation
Indices: 25994104--25994161 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
25994094 CCCTAACCCT
25994104 AAAACCCTAACCTAATTAAATAA
1 AAAACCCTAACCTAATTAAATAA
* *
25994127 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTAAATAA
*
25994150 AAAACCTTAACC
1 AAAACCCTAACC
25994162 CTAAAACCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (23 bp):
AAAACCCTAACCTAATTAAATAA
Found at i:25994152 original size:60 final size:60
Alignment explanation
Indices: 25994066--25994223 Score: 298
Period size: 60 Copynumber: 2.6 Consensus size: 60
25994056 CCCTTAACTT
25994066 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAACCCTAACCTAATTAAATA
1 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAACCCTAACCTAATTAAATA
* *
25994126 AAAAACCCTAACCTAATTTAATTAAAAACCTTAACCCTAAAACCCTAACCTAATTAAATT
1 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAACCCTAACCTAATTAAATA
25994186 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
25994224 TAACCTTAAA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 95 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.25
Consensus pattern (60 bp):
AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAACCCTAACCTAATTAAATA
Found at i:25994168 original size:37 final size:37
Alignment explanation
Indices: 25994127--25994198 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
25994117 AATTAAATAA
* *
25994127 AAAACCCTAACCTAATTTAATTAAAAACCTTAACCCT
1 AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCT
25994164 AAAACCCTAACCTAATTAAATTAAAAACCCTAACC
1 AAAACCCTAACCTAATTAAATTAAAAACCCTAACC
25994199 TAATTTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.24
Consensus pattern (37 bp):
AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCT
Found at i:25994182 original size:23 final size:22
Alignment explanation
Indices: 25994164--25994508 Score: 300
Period size: 23 Copynumber: 15.5 Consensus size: 22
25994154 CCTTAACCCT
25994164 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATT-AATTA
25994187 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAA-TTAATTA
*
25994210 AAAACCCTAACC--CTTAACCTT-
1 AAAACCCTAACCTAATTAA--TTA
*
25994231 AAAATCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAA-TTAATTA
* *
25994254 AAAACCCTAACC-CA-TAACCCT-
1 AAAACCCTAACCTAATTAA--TTA
25994275 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATT-AATTA
25994298 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAA-TTAATTA
*
25994321 AAAACCATAACCTAATTAAATTA
1 AAAACCCTAACCTAATT-AATTA
25994344 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAA-TTAATTA
* * **
25994367 AAAACTCTAACCCT--TCACCCT-
1 AAAACCCTAA-CCTAATTA-ATTA
*
25994388 AAAACCCTAACCTAATTAAATTG
1 AAAACCCTAACCTAATT-AATTA
25994411 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATT-AATTA
** *
25994434 AAAACCCTAACC-CGTTACTTA
1 AAAACCCTAACCTAATTAATTA
***
25994455 AAAACCCTAACCCCCTTAACTTA
1 AAAACCCTAACCTAATTAA-TTA
*
25994478 AAAACCCTAACC--CTTAACTTA
1 AAAACCCTAACCTAATTAA-TTA
25994499 AAAACCCTAA
1 AAAACCCTAA
25994509 ACCCTTAACT
Statistics
Matches: 274, Mismatches: 24, Indels: 50
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.04
21 69 0.25
22 19 0.07
23 161 0.59
24 15 0.05
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (22 bp):
AAAACCCTAACCTAATTAATTA
Found at i:25994246 original size:44 final size:44
Alignment explanation
Indices: 25994187--25994561 Score: 272
Period size: 44 Copynumber: 8.4 Consensus size: 44
25994177 AATTAAATTA
*
25994187 AAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACCTT
1 AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACCTT
* * * *
25994231 AAAATCCTAACCTAATTTAATTAAAAACCCTAACCCATAACCCT
1 AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACCTT
*
25994275 AAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAA--TT
1 AAAACCCTAACCTAATTAAATTAAAAACCCTAACC---CTTAACCTT
* *
25994320 AAAAACCATAACCTAATTAAATTAAAAACCCTAACCTAATTTAA--TT
1 -AAAACCCTAACCTAATTAAATTAAAAACCCTAACC---CTTAACCTT
* * *** * *
25994366 AAAAACTCTAACCCT--TCACCCT-AAAACCCTAACCTAATTAA-ATT
1 -AAAACCCTAA-CCTAATTAAATTAAAAACCCTAACC--CTTAACCTT
25994410 GAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCGTT-A-CTT
1 -AAAACCCTAACCTAATTAAATTAAAAACCCTAACCC-TTAACCTT
*** *
25994454 AAAAACCCTAACCCCCTTAACTTAAAAACCCTAACCCTTAA-CTT
1 -AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACCTT
* * * * *
25994498 AAAAACCCTAAACC--CTTAACTTAAAAACTCTTACCCTTAACTTT
1 -AAAACCCT-AACCTAATTAAATTAAAAACCCTAACCCTTAACCTT
* *
25994542 AAAACCTTAAACTAAGTTAA
1 AAAACCCTAACCTAA-TTAA
25994562 TAATTTTACT
Statistics
Matches: 279, Mismatches: 36, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
42 3 0.01
43 41 0.15
44 147 0.53
45 17 0.06
46 65 0.23
47 6 0.02
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.26
Consensus pattern (44 bp):
AAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACCTT
Found at i:25994392 original size:67 final size:66
Alignment explanation
Indices: 25994184--25994525 Score: 306
Period size: 67 Copynumber: 5.1 Consensus size: 66
25994174 CCTAATTAAA
* * * *
25994184 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACC--CTTAACCTT-AAAATCCTAACCTAA
1 TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAACC---
* *
25994246 TTTAA
62 CTTAC
* **
25994251 TTAAAAACCCTAACC-CA-TAACCCT-AAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAA
1 TTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC---
* *
25994313 TTTAA
62 CTTAC
* * *
25994318 TTAAAAACCATAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAACCCTTC
1 TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTT-
25994383 ACC
65 A-C
* *
25994386 CT-AAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCGTT
1 TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCC-TT
25994450 AC
65 AC
*** * * *
25994452 TTAAAAACCCTAACCCCCTTAACTTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAACCCTT
1 TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCCTT
25994515 AAC
65 -AC
25994518 TTAAAAAC
1 TTAAAAAC
25994526 TCTTACCCTT
Statistics
Matches: 234, Mismatches: 28, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
65 31 0.13
66 23 0.10
67 139 0.59
68 5 0.02
69 36 0.15
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (66 bp):
TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTA
C
Found at i:25994456 original size:21 final size:21
Alignment explanation
Indices: 25994164--25994547 Score: 226
Period size: 23 Copynumber: 17.3 Consensus size: 21
25994154 CCTTAACCCT
* *
25994164 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACC--CTTAACTTA
*
25994187 AAAACCCTAACCTAATTTAA-TTA
1 AAAACCCTAACC---CTTAACTTA
25994210 AAAACCCTAACCCTTAACCTT-
1 AAAACCCTAACCCTTAA-CTTA
* *
25994231 AAAATCCTAACCTAATTTAA-TTA
1 AAAACCCTAACC---CTTAACTTA
* *
25994254 AAAACCCTAACCCATAACCCT-
1 AAAACCCTAACCCTTAA-CTTA
* *
25994275 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACC--CTTAACTTA
*
25994298 AAAACCCTAACCTAATTTAA-TTA
1 AAAACCCTAACC---CTTAACTTA
* * *
25994321 AAAACCATAACCTAATTAAATTA
1 AAAACCCTAACC--CTTAACTTA
*
25994344 AAAACCCTAACCTAATTTAA-TTA
1 AAAACCCTAACC---CTTAACTTA
* * *
25994367 AAAACTCTAACCCTTCACCCT-
1 AAAACCCTAACCCTT-AACTTA
* * *
25994388 AAAACCCTAACCTAATTAAATTG
1 AAAACCCTAACC--CTTAACTTA
* *
25994411 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACC--CTTAACTTA
25994434 AAAACCCTAACCCGTT-ACTTA
1 AAAACCCTAACCC-TTAACTTA
25994455 AAAACCCTAACCCCCTTAACTTA
1 AAAACCCTAA--CCCTTAACTTA
25994478 AAAACCCTAACCCTTAACTTA
1 AAAACCCTAACCCTTAACTTA
25994499 AAAACCCTAAACCCTTAACTTA
1 AAAACCCT-AACCCTTAACTTA
* * *
25994521 AAAACTCTTACCCTTAACTTT
1 AAAACCCTAACCCTTAACTTA
25994542 AAAACC
1 AAAACC
25994548 TTAAACTAAG
Statistics
Matches: 299, Mismatches: 37, Indels: 52
0.77 0.10 0.13
Matches are distributed among these distances:
20 9 0.03
21 84 0.28
22 38 0.13
23 149 0.50
24 19 0.06
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (21 bp):
AAAACCCTAACCCTTAACTTA
Found at i:25994794 original size:115 final size:116
Alignment explanation
Indices: 25994558--25994799 Score: 337
Period size: 115 Copynumber: 2.1 Consensus size: 116
25994548 TTAAACTAAG
* * **
25994558 TTAATAATTTTACTTTCATGTAATGTTAGATTTGGAAAATTGGTTTTTCCTAGTACTAACAATTA
1 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
* *
25994623 ACAACCCTAACCTAATTTGATAATTTTACTAACCATTAATACAATTTATCAC
66 ACAACCCTAA-CTAATTTGATAATTTTACTAACCATTAATACAAATTATCAA
*
25994675 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAAT-GTTTTGACTGGTACTAACAATTA
1 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
* ***
25994739 ATAATTTTATA-TAATTTGA-AATTTTTACTAACCATTAATACAAATTATCAA
66 ACAACCCTA-ACTAATTTGATAA-TTTTACTAACCATTAATACAAATTATCAA
25994790 TTAATAATTT
1 TTAATAATTT
25994800 CACAAACTTA
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
114 2 0.02
115 45 0.40
116 25 0.22
117 40 0.36
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (116 bp):
TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
ACAACCCTAACTAATTTGATAATTTTACTAACCATTAATACAAATTATCAA
Found at i:25998033 original size:125 final size:124
Alignment explanation
Indices: 25997810--25998158 Score: 592
Period size: 123 Copynumber: 2.8 Consensus size: 124
25997800 CAAACATGCT
*
25997810 ACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTT-ACAAATTCTTCTCAAATAGCATCCTGCT
*
25997875 AGAAGCGATTTTAGACTATTTGCTCAGAAACGTCAAAGAAAAATTATTTCTTCCATGACCG
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAA-AAAAATTATTTCTTCCATGACCG
25997936 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
*
25998001 GAAGCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAATTATTTCTTCCATGACCT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGACCG
* * *
25998059 ATTATAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
* * *
25998124 GAAGCGATTTTATACTATTCGATCAGAAATGTCAA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
25998159 CTCGAAATTA
Statistics
Matches: 213, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
123 114 0.54
124 3 0.01
125 61 0.29
126 35 0.16
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGACCG
Found at i:25998483 original size:10 final size:9
Alignment explanation
Indices: 25998469--25998501 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
25998459 CATTTTTTAT
25998469 TAAAAATCA
1 TAAAAATCA
25998478 TAAAAATCA
1 TAAAAATCA
25998487 TTAAAAAT-A
1 -TAAAAATCA
25998496 TAAAAA
1 TAAAAA
25998502 ATATATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 10 0.43
10 7 0.30
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAAATCA
Found at i:25999230 original size:10 final size:10
Alignment explanation
Indices: 25999211--25999357 Score: 60
Period size: 10 Copynumber: 15.0 Consensus size: 10
25999201 AATGTATTAG
25999211 AATTTATTATA
1 AATTT-TTATA
25999222 AATTTTTAT-
1 AATTTTTATA
* *
25999231 GATTCTTTTTA
1 AATT-TTTATA
*
25999242 TATTTTTATA
1 AATTTTTATA
* *
25999252 AGTTTATATA
1 AATTTTTATA
*
25999262 TA-TTTTA-A
1 AATTTTTATA
*
25999270 ATACTTTTAT-
1 A-ATTTTTATA
25999280 AATTTATTA-A
1 AATTT-TTATA
*
25999290 AATTTATTA-G
1 AATTT-TTATA
25999300 AATTTTTATA
1 AATTTTTATA
* *
25999310 AGTTTGTATA
1 AATTTTTATA
*
25999320 AATATTTA-A
1 AATTTTTATA
*
25999329 TATTTTTAT-
1 AATTTTTATA
*
25999338 AA-TTTTAAA
1 AATTTTTATA
25999347 ATATTTTTATA
1 A-ATTTTTATA
25999358 TTTTTATGAT
Statistics
Matches: 100, Mismatches: 24, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
8 6 0.06
9 23 0.23
10 57 0.57
11 14 0.14
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (10 bp):
AATTTTTATA
Found at i:25999284 original size:58 final size:56
Alignment explanation
Indices: 25999236--25999364 Score: 163
Period size: 58 Copynumber: 2.3 Consensus size: 56
25999226 TTTATGATTC
*
25999236 TTTTTATATTTTTATAAGTTTATATATAT-TTTAAATACTTTTATAATTTATTAAAAT
1 TTTTTATATTTTTATAAGTTTATATAAATATTT-AATACTTTTATAATTT-TTAAAAT
* * * *
25999293 TTATTAGAATTTTTATAAGTTTGTATAAATATTTAATATTTTTATAA-TTTTAAAAT
1 TTTTTA-TATTTTTATAAGTTTATATAAATATTTAATACTTTTATAATTTTTAAAAT
25999349 ATTTTTATATTTTTAT
1 -TTTTTATATTTTTAT
25999365 GATTTTAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 15 0.24
57 12 0.19
58 32 0.52
59 3 0.05
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (56 bp):
TTTTTATATTTTTATAAGTTTATATAAATATTTAATACTTTTATAATTTTTAAAAT
Found at i:25999333 original size:29 final size:28
Alignment explanation
Indices: 25999241--25999369 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 28
25999231 GATTCTTTTT
*
25999241 ATATTTTTATAAGTTTATATATAT-TTTAA
1 ATATTTTTATAA-TTTATATAAATATTT-A
*
25999270 ATACTTTTATAATTTAT-TAAA-ATTTA
1 ATATTTTTATAATTTATATAAATATTTA
* *
25999296 TTAGAATTTTTATAAGTTTGTATAAATATTTA
1 --A-TATTTTTATAA-TTTATATAAATATTTA
*
25999328 ATATTTTTATAATTT-TA-AAATATTTTT
1 ATATTTTTATAATTTATATAAATA-TTTA
*
25999355 ATATTTTTATGATTT
1 ATATTTTTATAATTT
25999370 TAAAAAAAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 18
0.76 0.07 0.16
Matches are distributed among these distances:
26 6 0.07
27 25 0.30
28 9 0.11
29 30 0.36
30 5 0.06
31 4 0.05
32 5 0.06
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (28 bp):
ATATTTTTATAATTTATATAAATATTTA
Found at i:25999349 original size:19 final size:19
Alignment explanation
Indices: 25999327--25999363 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25999317 ATAAATATTT
25999327 AATATTTTTATAATTTTAA
1 AATATTTTTATAATTTTAA
*
25999346 AATATTTTTATATTTTTA
1 AATATTTTTATAATTTTA
25999364 TGATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
AATATTTTTATAATTTTAA
Found at i:25999383 original size:27 final size:27
Alignment explanation
Indices: 25999328--25999383 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
25999318 TAAATATTTA
* ***
25999328 ATATTTTTATAATTTTAAAATATTTTT
1 ATATTTTTATAATTTTAAAAAAAAATT
*
25999355 ATATTTTTATGATTTTAAAAAAAAATT
1 ATATTTTTATAATTTTAAAAAAAAATT
25999382 AT
1 AT
25999384 TATTAAAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (27 bp):
ATATTTTTATAATTTTAAAAAAAAATT
Found at i:25999976 original size:6 final size:6
Alignment explanation
Indices: 25999965--25999993 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
25999955 AACGAATGAT
25999965 CTTGAG CTTGAG CTTGAG CTTGAG CTTGA
1 CTTGAG CTTGAG CTTGAG CTTGAG CTTGA
25999994 ATATAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (6 bp):
CTTGAG
Found at i:26001647 original size:20 final size:20
Alignment explanation
Indices: 26001624--26001667 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
26001614 TAATTTAGCC
*
26001624 ATTTTTGTTTTTATTTTAAT
1 ATTTTTGTTTTTAATTTAAT
26001644 ATTTTTGTTTTTAATTTAAT
1 ATTTTTGTTTTTAATTTAAT
26001664 -TTTT
1 ATTTT
26001668 ACATTCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (20 bp):
ATTTTTGTTTTTAATTTAAT
Found at i:26008421 original size:22 final size:23
Alignment explanation
Indices: 26008396--26008439 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
26008386 CTTAGTTTAG
* *
26008396 TTAAATGATTTCTAA-TATGTTT
1 TTAAATGAATTCAAATTATGTTT
26008418 TTAAATGAATTCAAATTATGTT
1 TTAAATGAATTCAAATTATGTT
26008440 AGCACCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (23 bp):
TTAAATGAATTCAAATTATGTTT
Found at i:26019563 original size:18 final size:18
Alignment explanation
Indices: 26019540--26019576 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26019530 TAGAATAAAA
26019540 AATATAATCAATATTCAT
1 AATATAATCAATATTCAT
26019558 AATATAATCAATATTCAT
1 AATATAATCAATATTCAT
26019576 A
1 A
26019577 CAAAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATAATCAATATTCAT
Found at i:26019835 original size:24 final size:22
Alignment explanation
Indices: 26019779--26019841 Score: 56
Period size: 24 Copynumber: 2.8 Consensus size: 22
26019769 TGGACCTTTA
**
26019779 AATTTGATA-ATTTTTTAATTT
1 AATTTGATATATTTTTTAATGG
* *
26019800 AATTTCAAATATTTATTTATATGG
1 AATTTGATATATTT-TTTA-ATGG
26019824 AATTTGATATATATTTTT
1 AATTTGATATAT-TTTTT
26019842 TAATTTTGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
21 7 0.22
22 4 0.12
23 4 0.12
24 15 0.47
25 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (22 bp):
AATTTGATATATTTTTTAATGG
Found at i:26020237 original size:43 final size:43
Alignment explanation
Indices: 26020166--26020257 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
26020156 AAACTTAAAG
*
26020166 TTATACCTTATCTTATTACTATTATTAATAATTGACATCATCT
1 TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
*
26020209 TTATCCCTTTTCTTATTACTATTATTAATAATTGACATCATCT
1 TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
26020252 TTATCC
1 TTATCC
26020258 GGTAGTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.50
Consensus pattern (43 bp):
TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
Found at i:26029383 original size:11 final size:11
Alignment explanation
Indices: 26029360--26029410 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 11
26029350 AGACAAATAA
26029360 TAATTAAATAAT
1 TAATTAAA-AAT
26029372 TAATTAAAAAT
1 TAATTAAAAAT
*
26029383 TCA-TAAAAAT
1 TAATTAAAAAT
**
26029393 TAAAAAAAAAT
1 TAATTAAAAAT
26029404 T-ATTAAA
1 TAATTAAA
26029411 CTAGTTCAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 13 0.39
11 12 0.36
12 8 0.24
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATTAAAAAT
Found at i:26029410 original size:21 final size:23
Alignment explanation
Indices: 26029362--26029410 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
26029352 ACAAATAATA
**
26029362 ATTAAATAATTAATTAAAAATTC
1 ATTAAATAATTAAAAAAAAATTC
26029385 A-TAAA-AATTAAAAAAAAATT-
1 ATTAAATAATTAAAAAAAAATTC
26029405 ATTAAA
1 ATTAAA
26029411 CTAGTTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 4 0.17
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
ATTAAATAATTAAAAAAAAATTC
Found at i:26035397 original size:54 final size:53
Alignment explanation
Indices: 26035259--26035567 Score: 246
Period size: 54 Copynumber: 5.7 Consensus size: 53
26035249 TCTACTTTTA
* * * * * * *
26035259 AGATTTTATGAATCTCAC-GATCTGCTAATTTATGATCATGACTTTTTACTTTGCG
1 AGATTTTACGAATTTCACAG-TCCGCTGATTTACGATCATGAC-ATTCACTTT-CG
* * * *
26035314 AGATTTTACGAATCTCGCAGTTCGCTGATTTACGATCATGACATTCAGCTTTTG
1 AGATTTTACGAATTTCACAGTCCGCTGATTTACGATCATGACATTCA-CTTTCG
* * ** * *
26035368 AGATTTTACGAATTTCATAGTCCGTTGATTTACGATCACCACCTTTTACTTTCG
1 AGATTTTACGAATTTCACAGTCCGCTGATTTACGATCATGA-CATTCACTTTCG
* ** * *
26035422 AAATTTTACGAATCTT-ATGGTCCGCTGATTTATGATCATGACCTTCCACTTTCG
1 AGATTTTACGAAT-TTCACAGTCCGCTGATTTACGATCATGACATT-CACTTTCG
** *
26035476 AGATTTTACGAATTTCACAGTTTGCTGATTTACAATCATGA-ACTTCTACTTTCG
1 AGATTTTACGAATTTCACAGTCCGCTGATTTACGATCATGACA-TTC-ACTTTCG
* * * * *
26035530 AGATTTTATGAATCTCACGGTCCACTGATTGACGATCA
1 AGATTTTACGAATTTCACAGTCCGCTGATTTACGATCA
26035568 CGACCTTTGT
Statistics
Matches: 203, Mismatches: 43, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
53 6 0.03
54 152 0.75
55 44 0.22
56 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (53 bp):
AGATTTTACGAATTTCACAGTCCGCTGATTTACGATCATGACATTCACTTTCG
Found at i:26035463 original size:108 final size:108
Alignment explanation
Indices: 26035302--26035567 Score: 318
Period size: 108 Copynumber: 2.5 Consensus size: 108
26035292 GATCATGACT
* * *
26035302 TTTTACTTTGCGAGATTTTACGAATCTCGCAGTTCGCTGATTTACGATCATGACATT-CAGCTTT
1 TTTTACTTT-CGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACATTCCA-CTTT
* * * * *
26035366 TGAGATTTTACGAATTTCATAGTCCGTTGATTTACGATCACCACC
64 CGAGATTTTACGAATTTCACAGTCCGCTGATTTACAATCACCAAC
* * * * *
26035411 TTTTACTTTCGAAATTTTACGAATCTTATGGTCCGCTGATTTATGATCATGACCTTCCACTTTCG
1 TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACATTCCACTTTCG
** **
26035476 AGATTTTACGAATTTCACAGTTTGCTGATTTACAATCATGAAC
66 AGATTTTACGAATTTCACAGTCCGCTGATTTACAATCACCAAC
* * * *
26035519 TTCTACTTTCGAGATTTTATGAATCTCACGGTCCACTGATTGACGATCA
1 TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCA
26035568 CGACCTTTGT
Statistics
Matches: 131, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
108 120 0.92
109 11 0.08
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (108 bp):
TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACATTCCACTTTCG
AGATTTTACGAATTTCACAGTCCGCTGATTTACAATCACCAAC
Found at i:26039876 original size:12 final size:12
Alignment explanation
Indices: 26039846--26039878 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26039836 ATGCAACAGG
26039846 AAACCAGCA-GC
1 AAACCAGCATGC
26039857 AAACCAGCATGC
1 AAACCAGCATGC
*
26039869 AGACCAGCAT
1 AAACCAGCAT
26039879 CCAAGCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.42, C:0.33, G:0.18, T:0.06
Consensus pattern (12 bp):
AAACCAGCATGC
Found at i:26040899 original size:20 final size:20
Alignment explanation
Indices: 26040876--26040914 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26040866 AAATTTAAAA
26040876 TATAAAAAATTATTAATATG
1 TATAAAAAATTATTAATATG
* *
26040896 TATATAAATTTATTAATAT
1 TATAAAAAATTATTAATAT
26040915 ATGTAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TATAAAAAATTATTAATATG
Found at i:26040976 original size:32 final size:32
Alignment explanation
Indices: 26040935--26041021 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 32
26040925 AACTTTTTCG
26040935 GAAAATATTTTCAAGAAATC-TGCCAAACAACA
1 GAAAATATTTTCAAGAAATCAT-CCAAACAACA
* *
26040967 GAAAATATTTTACACAG-ATTCATCCAAACACCA
1 GAAAATATTTT-CA-AGAAATCATCCAAACAACA
*
26041000 GAAAATATTTTCAATAAATCAT
1 GAAAATATTTTCAAGAAATCAT
26041022 TTTCCAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
31 1 0.02
32 18 0.38
33 25 0.53
34 3 0.06
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.26
Consensus pattern (32 bp):
GAAAATATTTTCAAGAAATCATCCAAACAACA
Found at i:26041071 original size:20 final size:20
Alignment explanation
Indices: 26041014--26041064 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
26041004 ATATTTTCAA
26041014 TAAATCATTTTCCAG-AAAG
1 TAAATCATTTTCCAGAAAAG
*
26041033 TAAATCATTTTCCAAAAAAG
1 TAAATCATTTTCCAGAAAAG
26041053 TAAATCATTTTC
1 TAAATCATTTTC
26041065 TGGAAAACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (20 bp):
TAAATCATTTTCCAGAAAAG
Found at i:26041516 original size:21 final size:22
Alignment explanation
Indices: 26041464--26041516 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
26041454 ACCGCTGTTT
*
26041464 CTAATCTCA-CTGCTACAGTAT
1 CTAATCTCACCTGCTACAGTAA
*
26041485 CCAATCTCACCT-CTACAGTAA
1 CTAATCTCACCTGCTACAGTAA
26041506 CTAATCTCACC
1 CTAATCTCACC
26041517 GCCACCGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.06, T:0.28
Consensus pattern (22 bp):
CTAATCTCACCTGCTACAGTAA
Found at i:26047022 original size:45 final size:44
Alignment explanation
Indices: 26046973--26047092 Score: 143
Period size: 45 Copynumber: 2.7 Consensus size: 44
26046963 ATACCAGAAA
* * *
26046973 CGAGTAAGACCGTAGCTACAAGACGTTATGGTATTACG-ATTCTAT
1 CGAGTAAGACCATAGCTA-AAGACGTTATGGCA-TAAGAATTCTAT
*
26047018 CGAGTAAGACCATAGCTAAAAGACGTTATGGCATAAGAATTTTAT
1 CGAGTAAGACCATAGCT-AAAGACGTTATGGCATAAGAATTCTAT
* *
26047063 CAAGTAAGACCATAGCTGAAAGACGCTATG
1 CGAGTAAGACCATAGCT-AAAGACGTTATG
26047093 ACATCATTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 3 0.05
45 62 0.94
46 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (44 bp):
CGAGTAAGACCATAGCTAAAGACGTTATGGCATAAGAATTCTAT
Found at i:26047174 original size:46 final size:46
Alignment explanation
Indices: 26047113--26047323 Score: 255
Period size: 46 Copynumber: 4.6 Consensus size: 46
26047103 TCAAACGAAC
*
26047113 AAGACCACAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
* * *
26047159 AAGACCATATTTGAAAGACACTATGGCAACATGAAGAAAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
* * *
26047205 AAGACCATAGTTGAAAGACACTATGGAAACACGATGGAAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
* * * * * * *
26047251 AAGGA-TATTGTTGAAAGACACTATGGCATCAAGTCG-AGAATAAAT
1 AA-GACCATAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
* *
26047296 AAGACCATGGTTGAAAGACACCATGGCA
1 AAGACCATAGTTGAAAGACACTATGGCA
26047324 CCCTTCGGTC
Statistics
Matches: 142, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
44 2 0.01
45 29 0.20
46 109 0.77
47 2 0.01
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (46 bp):
AAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAATGAAT
Found at i:26050631 original size:20 final size:19
Alignment explanation
Indices: 26050594--26050694 Score: 76
Period size: 20 Copynumber: 5.1 Consensus size: 19
26050584 CGAAGTGTAG
*
26050594 ACAGGGGCACAAATGTGCAA
1 ACAGGGGCACCAA-GTGCAA
*
26050614 ACAGGGGCACCATAGTGCGA
1 ACAGGGGCACCA-AGTGCAA
* * * * * *
26050634 ATAGAGACACTGAAGTGTAT
1 ACAGGGGCAC-CAAGTGCAA
*
26050654 ACAGGGGCACTGAAGTGCAA
1 ACAGGGGCAC-CAAGTGCAA
26050674 ACAGGGGCACCGAAGTGCAA
1 ACAGGGGCACC-AAGTGCAA
26050694 A
1 A
26050695 TCTCGTACAA
Statistics
Matches: 63, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.32, T:0.12
Consensus pattern (19 bp):
ACAGGGGCACCAAGTGCAA
Found at i:26051258 original size:13 final size:13
Alignment explanation
Indices: 26051240--26051282 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
26051230 AATTAATAAT
26051240 TTAATTCAATCTA
1 TTAATTCAATCTA
*
26051253 TTAATT-AAT-AA
1 TTAATTCAATCTA
26051264 TTTAATTCAATCTA
1 -TTAATTCAATCTA
26051278 TTAAT
1 TTAAT
26051283 GTAGAAGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 9 0.36
13 14 0.56
14 1 0.04
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (13 bp):
TTAATTCAATCTA
Found at i:26051259 original size:25 final size:25
Alignment explanation
Indices: 26051230--26051282 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
26051220 TCTTGATCTA
26051230 AATTAATAATTTAATTCAATCTATT
1 AATTAATAATTTAATTCAATCTATT
26051255 AATTAATAATTTAATTCAATCTATT
1 AATTAATAATTTAATTCAATCTATT
26051280 AAT
1 AAT
26051283 GTAGAAGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (25 bp):
AATTAATAATTTAATTCAATCTATT
Found at i:26056628 original size:15 final size:16
Alignment explanation
Indices: 26056608--26056637 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26056598 TAACAACTAG
26056608 TATATAAT-TATATTT
1 TATATAATATATATTT
26056623 TATATAATATATATT
1 TATATAATATATATT
26056638 AATTGTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:26076548 original size:18 final size:18
Alignment explanation
Indices: 26076525--26076560 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26076515 TAAATTGAGT
26076525 TTAATTAAAGTAATTGTC
1 TTAATTAAAGTAATTGTC
*
26076543 TTAATTAAAGTATTTGTC
1 TTAATTAAAGTAATTGTC
26076561 CTACTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (18 bp):
TTAATTAAAGTAATTGTC
Found at i:26079632 original size:27 final size:27
Alignment explanation
Indices: 26079594--26079646 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
26079584 TCATCCTAAG
26079594 AGAAATTCAAAACTATGTCGCTAGACC
1 AGAAATTCAAAACTATGTCGCTAGACC
*
26079621 AGAAATTCAAAACTGTGTCGCTAGAC
1 AGAAATTCAAAACTATGTCGCTAGAC
26079647 ATTCTGGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (27 bp):
AGAAATTCAAAACTATGTCGCTAGACC
Found at i:26085152 original size:25 final size:25
Alignment explanation
Indices: 26085117--26085392 Score: 381
Period size: 25 Copynumber: 11.0 Consensus size: 25
26085107 AATCGGATAA
* * * *
26085117 CACTAATGTGCTAATAACCAAATAG
1 CACTAACGTGCTAATAATCAGAGAG
26085142 CACTAACGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
26085167 CACTAACGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* *
26085192 CACTGATGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* *
26085217 AACTAACGTGCTAATAATCAAAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* *
26085242 CACTAACATGCTAATAATTAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* * *
26085267 CACTGATGTGCTAGTAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
26085292 CACTAACGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
26085317 CACTAACGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* * * *
26085342 GATTGAGGTGCTAATAATCAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
* *
26085367 CACTAATGTGCTAATAATTAGAGAG
1 CACTAACGTGCTAATAATCAGAGAG
26085392 C
1 C
26085393 GCGCTAAGGT
Statistics
Matches: 220, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 220 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (25 bp):
CACTAACGTGCTAATAATCAGAGAG
Found at i:26085206 original size:75 final size:75
Alignment explanation
Indices: 26085117--26085392 Score: 426
Period size: 75 Copynumber: 3.7 Consensus size: 75
26085107 AATCGGATAA
* * * *
26085117 CACTAATGTGCTAATAACCAAATAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
1 CACTGATGTGCTAATAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
26085182 AATCAGAGAG
66 AATCAGAGAG
* * *
26085192 CACTGATGTGCTAATAATCAGAGAGAACTAACGTGCTAATAATCAAAGAGCACTAACATGCTAAT
1 CACTGATGTGCTAATAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
*
26085257 AATTAGAGAG
66 AATCAGAGAG
*
26085267 CACTGATGTGCTAGTAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
1 CACTGATGTGCTAATAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
26085332 AATCAGAGAG
66 AATCAGAGAG
* * * * *
26085342 GATTGAGGTGCTAATAATCAGAGAGCACTAATGTGCTAATAATTAGAGAGC
1 CACTGATGTGCTAATAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGC
26085393 GCGCTAAGGT
Statistics
Matches: 182, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 182 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (75 bp):
CACTGATGTGCTAATAATCAGAGAGCACTAACGTGCTAATAATCAGAGAGCACTAACGTGCTAAT
AATCAGAGAG
Found at i:26086008 original size:49 final size:47
Alignment explanation
Indices: 26085936--26086060 Score: 142
Period size: 49 Copynumber: 2.6 Consensus size: 47
26085926 CATAGTTTAA
* * * *
26085936 CTATGGTCTTGCACATAATCACATATCATACACCAAAGCCATAGCCCAG
1 CTATGGTCTTACACAAAATCACATATCAGACA--AAAGCCAAAGCCCAG
* * * *
26085985 CTATGGTCTTACACAGAAGCACATATCAGACAGATGCCAAAGCCCAG
1 CTATGGTCTTACACAAAATCACATATCAGACAAAAGCCAAAGCCCAG
*
26086032 CTATGGTCTTATACAAAAATCACATATCA
1 CTATGGTCTTACAC-AAAATCACATATCA
26086061 CATATTGCCA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
47 25 0.38
48 12 0.18
49 28 0.43
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (47 bp):
CTATGGTCTTACACAAAATCACATATCAGACAAAAGCCAAAGCCCAG
Found at i:26092727 original size:5 final size:5
Alignment explanation
Indices: 26092717--26092744 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26092707 TTTATTTGAC
26092717 ATTAA ATTAA ATTAA ATTAA ATTAA ATT
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATT
26092745 CTAAAATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
ATTAA
Found at i:26095185 original size:37 final size:37
Alignment explanation
Indices: 26095135--26095213 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26095125 TTATTACGAA
* * *
26095135 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26095172 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26095209 GTCTT
1 GTCTT
26095214 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26095491 original size:47 final size:47
Alignment explanation
Indices: 26095331--26095601 Score: 472
Period size: 47 Copynumber: 5.7 Consensus size: 47
26095321 GCCCTTCGGG
*
26095331 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
26095381 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
26095430 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26095477 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26095523 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26095570 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
26095602 ATACTATCAT
Statistics
Matches: 219, Mismatches: 1, Indels: 5
0.97 0.00 0.02
Matches are distributed among these distances:
46 46 0.21
47 86 0.39
49 83 0.38
50 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:26095555 original size:93 final size:95
Alignment explanation
Indices: 26095331--26095601 Score: 474
Period size: 93 Copynumber: 2.8 Consensus size: 95
26095321 GCCCTTCGGG
*
26095331 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
26095396 ACATCGGCCATTAGGCCCTATCACATATATATAC
63 ACATCGGCCATTAGGCCCTATCACA-ATATATAC
26095430 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
26095495 TC-GCCATTAGGCCTTATCAC-ATATATAC
66 TCGGCCATTAGGCCCTATCACAATATATAC
26095523 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26095588 TCGGCCATTAGGCC
66 TCGGCCATTAGGCC
26095602 ATACTATCAT
Statistics
Matches: 169, Mismatches: 2, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
93 75 0.44
94 11 0.07
95 17 0.10
96 28 0.17
98 34 0.20
99 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (95 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCCTATCACAATATATAC
Found at i:26111083 original size:40 final size:40
Alignment explanation
Indices: 26111030--26111218 Score: 193
Period size: 40 Copynumber: 4.8 Consensus size: 40
26111020 GAGTTACTAG
* * * * *
26111030 AGTATAAATAGGGGCACGAAAGTGCATTTAGGGGTAACAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTAACAA
* * * *
26111070 AGTACAAACAGGGGCACGTATGTGCATTCAAGGGT-ACTGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTAAC-AA
* * * * *
26111110 AGTACAAACAAGGGCATGTAAGTGCAATCAGAGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTAACAA
* *
26111150 AGTACAAATAGGGGCACGTAAGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTAACAA
* *
26111190 AGTACATACA-AGGCACGTAAGTGCAATCA
1 AGTACAAACAGGGGCACGTAAGTGCAATCA
26111219 TCAATAATTA
Statistics
Matches: 125, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
39 20 0.16
40 104 0.83
41 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.17
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTAACAA
Found at i:26111175 original size:80 final size:79
Alignment explanation
Indices: 26111042--26111218 Score: 219
Period size: 80 Copynumber: 2.2 Consensus size: 79
26111032 TATAAATAGG
* * * * * * * *
26111042 GGCACGAAAGTGCATTTAGGGGTAACAAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGTAC
1 GGCACGTAAGTGCAATCAGAGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTAC
**
26111107 TGAAGTACAAACAA
66 CAAAGTACAAACAA
* * *
26111121 GGGCATGTAAGTGCAATCAGAGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATCAGGGGTA
1 -GGCACGTAAGTGCAATCAGAGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTA
*
26111186 CCAAAGTACATACAA
65 CCAAAGTACAAACAA
26111201 GGCACGTAAGTGCAATCA
1 GGCACGTAAGTGCAATCA
26111219 TCAATAATTA
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 17 0.21
80 65 0.79
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (79 bp):
GGCACGTAAGTGCAATCAGAGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTAC
CAAAGTACAAACAA
Found at i:26111182 original size:20 final size:20
Alignment explanation
Indices: 26111078--26111218 Score: 67
Period size: 20 Copynumber: 7.1 Consensus size: 20
26111068 AAAGTACAAA
* *
26111078 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTAAGTGCAAT
* * * *
26111098 CAAGGGTAC-TGAAGTACAAA
1 CAGGGGCACGT-AAGTGCAAT
* *
26111118 CAAGGGCATGTAAGTGCAAT
1 CAGGGGCACGTAAGTGCAAT
* * *
26111138 CAGAGGTACCG-AAGTACAAAT
1 CAGGGGCA-CGTAAGTGC-AAT
26111159 -AGGGGCACGTAAGTGCAAT
1 CAGGGGCACGTAAGTGCAAT
* ** *
26111178 CAGGGGTACCAAAGTAC-AT
1 CAGGGGCACGTAAGTGCAAT
*
26111197 ACA-AGGCACGTAAGTGCAAT
1 -CAGGGGCACGTAAGTGCAAT
26111217 CA
1 CA
26111219 TCAATAATTA
Statistics
Matches: 86, Mismatches: 27, Indels: 17
0.66 0.21 0.13
Matches are distributed among these distances:
19 19 0.22
20 62 0.72
21 5 0.06
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.17
Consensus pattern (20 bp):
CAGGGGCACGTAAGTGCAAT
Found at i:26127351 original size:37 final size:38
Alignment explanation
Indices: 26127308--26127383 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
26127298 CCAATTCAAA
26127308 AAAAAATCAAAATCAAAATCAAAACCAAAA-AAAAAAG
1 AAAAAATCAAAATCAAAATCAAAACCAAAATAAAAAAG
* ** **
26127345 AAAAAATTAAAATCAAGGTCAAAATGAAAATAAAAAAG
1 AAAAAATCAAAATCAAAATCAAAACCAAAATAAAAAAG
26127383 A
1 A
26127384 GAGAAGAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
37 25 0.76
38 8 0.24
ACGTcount: A:0.72, C:0.09, G:0.07, T:0.12
Consensus pattern (38 bp):
AAAAAATCAAAATCAAAATCAAAACCAAAATAAAAAAG
Found at i:26127779 original size:14 final size:14
Alignment explanation
Indices: 26127755--26127797 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
26127745 AAGACAATGA
26127755 ATTGCAAAAAAAAAT
1 ATTG-AAAAAAAAAT
*
26127770 ATTGAAAAAAATAT
1 ATTGAAAAAAAAAT
26127784 ATTGAAAAAGAAAA
1 ATTGAAAAA-AAAA
26127798 AAGAGATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.21
Consensus pattern (14 bp):
ATTGAAAAAAAAAT
Found at i:26127813 original size:7 final size:7
Alignment explanation
Indices: 26127803--26127839 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
26127793 GAAAAAAGAG
26127803 ATGAAAA
1 ATGAAAA
26127810 ATG-AAA
1 ATGAAAA
26127816 ATGAAAA
1 ATGAAAA
26127823 ATGAAAA
1 ATGAAAA
26127830 A-GTAAAA
1 ATG-AAAA
26127837 ATG
1 ATG
26127840 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
6 7 0.26
7 19 0.70
8 1 0.04
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
ATGAAAA
Found at i:26127819 original size:13 final size:13
Alignment explanation
Indices: 26127803--26127839 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
26127793 GAAAAAAGAG
26127803 ATGAAAAATGAAA
1 ATGAAAAATGAAA
26127816 ATGAAAAATGAAA
1 ATGAAAAATGAAA
*
26127829 AAGTAAAAATG
1 ATG-AAAAATG
26127840 GAGAGGCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:26129224 original size:50 final size:50
Alignment explanation
Indices: 26129150--26129467 Score: 174
Period size: 50 Copynumber: 6.4 Consensus size: 50
26129140 CCACATCGGT
* *
26129150 GAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAACAGC
1 GAATCTTACTTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* * *** ** * * * * *
26129200 GAATGTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCCACATCGGT
1 GAATCTTACTTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* *
26129250 GAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAACAGC
1 GAATCTTACTTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* * * ** * * * * * *
26129300 G-A-CTTACTT-CTCAAGCGGTGCAGTGGAATAGATTAATGCCATAGCGGC
1 GAATCTTACTTCCCCGA-CAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* * ** * * * * * *
26129348 GAACCATGTTTCCCCAACATTGCAGTTAAAAAGACTAAAGCCACAACGGG
1 GAATCTTACTTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* *** ** * *
26129398 GAATCTTACTTTCCCAGGTGGTGCAGTGGAACAGATTGAAGCTACAACAGC
1 GAATCTTAC-TTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
* *
26129449 AAATCTCACTTCCCCGACA
1 GAATCTTACTTCCCCGACA
26129468 TCACAGTTAA
Statistics
Matches: 184, Mismatches: 79, Indels: 10
0.67 0.29 0.04
Matches are distributed among these distances:
47 3 0.02
48 30 0.16
49 2 0.01
50 111 0.60
51 38 0.21
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (50 bp):
GAATCTTACTTCCCCGACAGTGCAGTTAAAAAGATTAAAGCTACAACAGC
Found at i:26129295 original size:100 final size:100
Alignment explanation
Indices: 26129122--26129439 Score: 424
Period size: 100 Copynumber: 3.2 Consensus size: 100
26129112 TCTGAGATTA
* *
26129122 CAGTGGAACATATTAAAACCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
* *
26129187 AAGCTACAACAGCGAATGTTACTTCCCTGGTGGTG
66 AAGCTACAACAGCGAATCTTACTTCCCAGGTGGTG
26129222 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
* * *
26129287 AAGCTACAACAGCG-A-CTTACTTCTCAAGCGGTG
66 AAGCTACAACAGCGAATCTTACTTCCCAGGTGGTG
* * * * * * * * * *
26129320 CAGTGGAATAGATTAATGCCATAGCGGCGAACCATGTTTCCCCAACATTGCAGTTAAAAAGACTA
1 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
* * *
26129385 AAGCCACAACGGGGAATCTTACTTTCCCAGGTGGTG
66 AAGCTACAACAGCGAATCTTAC-TTCCCAGGTGGTG
*
26129421 CAGTGGAACAGATTGAAGC
1 CAGTGGAACAGATTAAAGC
26129440 TACAACAGCA
Statistics
Matches: 189, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
98 79 0.42
99 2 0.01
100 82 0.43
101 26 0.14
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (100 bp):
CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
AAGCTACAACAGCGAATCTTACTTCCCAGGTGGTG
Found at i:26135129 original size:50 final size:50
Alignment explanation
Indices: 26134835--26135113 Score: 337
Period size: 50 Copynumber: 5.5 Consensus size: 50
26134825 ACATTAAGAG
* * *
26134835 GATGAGA--TCCCTTGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGA
* *
26134886 GATTATGAGAGGTCCCATGTAAGACCATGTTTGGGACTTGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
*
26134939 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* *
26134989 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGTGTTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* ** * * *
26135039 GATGAGAGTTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* **
26135089 TATGAGAACTCCCATGTAAGACCAT
1 GATGAGAGGTCCCATGTAAGACCAT
26135114 ATTTGGGATG
Statistics
Matches: 201, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
50 157 0.78
51 1 0.00
53 3 0.01
54 6 0.03
55 1 0.00
56 33 0.16
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
Found at i:26146980 original size:50 final size:50
Alignment explanation
Indices: 26146877--26147069 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 50
26146867 GGGAATGAGA
* **
26146877 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---A---CCGAGATGAGAGG
*
26146933 TCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * * **
26146983 TCCC-CTATAAGACCATGTCTGAGACATAGCATGGGCACCGATATGAGAAC
1 TCCCAC-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * ** *
26147033 TGCCATGTAAGACCATACCTGGGATATGGCATTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
26147070 GTACAGGAAA
Statistics
Matches: 114, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 78 0.68
53 1 0.01
56 34 0.30
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:26147345 original size:20 final size:20
Alignment explanation
Indices: 26147320--26147369 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
26147310 ATGAGTTATT
26147320 CAAGTAAGCAAGTAAGTAAA
1 CAAGTAAGCAAGTAAGTAAA
26147340 CAAGTAAG-AGAGTAAGTAAA
1 CAAGTAAGCA-AGTAAGTAAA
*
26147360 GAAG-AAGCAA
1 CAAGTAAGCAA
26147370 AGACCATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.56, C:0.08, G:0.24, T:0.12
Consensus pattern (20 bp):
CAAGTAAGCAAGTAAGTAAA
Found at i:26151408 original size:21 final size:21
Alignment explanation
Indices: 26151382--26151424 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26151372 TCATGTATAT
26151382 ATCGGTTAAGCAATTTACCTA
1 ATCGGTTAAGCAATTTACCTA
26151403 ATCGGTTAAGCAATTTACCTA
1 ATCGGTTAAGCAATTTACCTA
26151424 A
1 A
26151425 ATCTAACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
ATCGGTTAAGCAATTTACCTA
Found at i:26153239 original size:21 final size:22
Alignment explanation
Indices: 26153214--26153264 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
26153204 AAAATATATT
26153214 AAATCAATTTTTAAA-AATTTG
1 AAATCAATTTTTAAATAATTTG
* * *
26153235 AAATC-TTTTTTAAATCATTTT
1 AAATCAATTTTTAAATAATTTG
26153256 AAATCAATT
1 AAATCAATT
26153265 CACGAGTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 8 0.33
21 14 0.58
22 2 0.08
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (22 bp):
AAATCAATTTTTAAATAATTTG
Found at i:26157372 original size:4 final size:4
Alignment explanation
Indices: 26157365--26157389 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26157355 AAAAAAAAAA
26157365 GAGG GAGG GAGG GAGG GAGG GAGG G
1 GAGG GAGG GAGG GAGG GAGG GAGG G
26157390 GTCGGGGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.76, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:26159469 original size:18 final size:17
Alignment explanation
Indices: 26159440--26159482 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
26159430 TCTCTCAATT
26159440 CTTTCT-AATCTCCTAA
1 CTTTCTCAATCTCCTAA
*
26159456 CTTTCTCAACTCTCTTAA
1 CTTTCTCAA-TCTCCTAA
*
26159474 ATTTCTCAA
1 CTTTCTCAA
26159483 GTTCTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 6 0.26
17 2 0.09
18 15 0.65
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (17 bp):
CTTTCTCAATCTCCTAA
Found at i:26164003 original size:11 final size:11
Alignment explanation
Indices: 26163987--26164025 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
26163977 TGTCCTTAAG
26163987 AAAACTAAATA
1 AAAACTAAATA
26163998 AAAACTAAA-A
1 AAAACTAAATA
26164008 ATAAACTAAACTA
1 A-AAACTAAA-TA
26164021 AAAAC
1 AAAAC
26164026 AGAAAATAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 17 0.68
12 4 0.16
13 2 0.08
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAACTAAATA
Found at i:26164031 original size:23 final size:22
Alignment explanation
Indices: 26163988--26164034 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
26163978 GTCCTTAAGA
26163988 AAACTAAATAAAAACTAAAAAT
1 AAACTAAATAAAAACTAAAAAT
26164010 AAACTAAACTAAAAAC-AGAAAAT
1 AAACTAAA-TAAAAACTA-AAAAT
26164033 AA
1 AA
26164035 CATGCAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.72, C:0.11, G:0.02, T:0.15
Consensus pattern (22 bp):
AAACTAAATAAAAACTAAAAAT
Found at i:26171438 original size:504 final size:504
Alignment explanation
Indices: 26170491--26171474 Score: 1824
Period size: 504 Copynumber: 2.0 Consensus size: 504
26170481 TCACCTTTGT
26170491 AATTTTTTTCACTCATCCCTCCATCAATCCTAGCATCCAAAACCCACCAAGTACCAAATCACCTA
1 AATTTTTTTCACTCATCCCTCCATCAATCCTAGCATCCAAAACCCACCAAGTACCAAATCACCTA
26170556 GTGCCGAACTCTCTAGCCGCAACACCGCCCAGCTTCGCACGTCACCTTTACGCCTAACAACAGCC
66 GTGCCGAACTCTCTAGCCGCAACACCGCCCAGCTTCGCACGTCACCTTTACGCCTAACAACAGCC
*
26170621 CCATTTGGCCAGCAGCCCAAGCACGCACCAGTAGCTTACGCCGCTACTGCCGCTCGCATCAGACC
131 CCATTTGGCCAGCAGCCCAAGCACGCACCAGTAGCTTACACCGCTACTGCCGCTCGCATCAGACC
* * *
26170686 TACTCTCACGCACCCGCTCATGTGCACCAATGCACCAGCCCTGCCATTCGCCCGACAATGCCACT
196 TACTCTCACGCACCCGCTCATGTGCACCAACGCACCAGCCCTACCATTCGCCCGACAATGCCACC
*
26170751 TGCTGTTCACACATCTGCTCACATCACGCCTTGCTACTCGGACCAACACCCTTTCCTATCGTACC
261 TGCTGTTCACACATCTGCTCACATCACGCCTTGCTACTCGGACCAACACCCTTTCCTATCGCACC
*
26170816 ATACCATCAAGAAACCCTACAACCATCCCTAAACCAAACCCTTTTGCTTTATATTTATTTTCTTT
326 ACACCATCAAGAAACCCTACAACCATCCCTAAACCAAACCCTTTTGCTTTATATTTATTTTCTTT
*
26170881 GAGTTCTTACCAAAGTGAGATACGAAAGCGTTTTCAAGAATCAATAGACGCACCTAGAAAAAGGC
391 GAGTTCTTACCAAAGTGAGATACGAAAGCGTTTTCAAGAATCAACAGACGCACCTAGAAAAAGGC
26170946 TTTACGCTGAAAGAAAACAACTATAAAGAAAACAACGAAAGTCTGATGC
456 TTTACGCTGAAAGAAAACAACTATAAAGAAAACAACGAAAGTCTGATGC
26170995 AATTTTTTTCACTCATCCCTCCATCAATCCTAGCATCCAAAACCCACCAAGTACCAAATCACCTA
1 AATTTTTTTCACTCATCCCTCCATCAATCCTAGCATCCAAAACCCACCAAGTACCAAATCACCTA
* *
26171060 GTGCCGAACTCTCTAGCCGCAACACCGCCCAGCTTCGCACGTCACCTTTACGCCTAGCAATAGCC
66 GTGCCGAACTCTCTAGCCGCAACACCGCCCAGCTTCGCACGTCACCTTTACGCCTAACAACAGCC
* *
26171125 CCATTTGGCTAGCAGCCCAAGCACGCACCAGTAGCTTACACTGCTACTGCCGCTCGCATCAGACC
131 CCATTTGGCCAGCAGCCCAAGCACGCACCAGTAGCTTACACCGCTACTGCCGCTCGCATCAGACC
* * *
26171190 TACTCTCACGCACCCGCTCATGTGCACCAACGCACCAGCCCTACTATTCGCTCGACAGTGCCACC
196 TACTCTCACGCACCCGCTCATGTGCACCAACGCACCAGCCCTACCATTCGCCCGACAATGCCACC
*
26171255 TGCTGTTCACACATCTGCTCACATCGCGCCTTGCTACTCGGACCAACACCCTTTCCTATCGCACC
261 TGCTGTTCACACATCTGCTCACATCACGCCTTGCTACTCGGACCAACACCCTTTCCTATCGCACC
26171320 ACACCATCAAGAAACCCTACAACCATCCCTAAACCAAACCCTTTTGCTTTATATTTATTTTCTTT
326 ACACCATCAAGAAACCCTACAACCATCCCTAAACCAAACCCTTTTGCTTTATATTTATTTTCTTT
26171385 GAGTTCTTACCAAAGTGAGATACGAAAGCGTTTTCAAGAATCAACAGACGCACCTAGAAAAAGGC
391 GAGTTCTTACCAAAGTGAGATACGAAAGCGTTTTCAAGAATCAACAGACGCACCTAGAAAAAGGC
*
26171450 TTTACGCTGAAAGAAAATAACTATA
456 TTTACGCTGAAAGAAAACAACTATA
26171475 TTGATTTCAT
Statistics
Matches: 464, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
504 464 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.23
Consensus pattern (504 bp):
AATTTTTTTCACTCATCCCTCCATCAATCCTAGCATCCAAAACCCACCAAGTACCAAATCACCTA
GTGCCGAACTCTCTAGCCGCAACACCGCCCAGCTTCGCACGTCACCTTTACGCCTAACAACAGCC
CCATTTGGCCAGCAGCCCAAGCACGCACCAGTAGCTTACACCGCTACTGCCGCTCGCATCAGACC
TACTCTCACGCACCCGCTCATGTGCACCAACGCACCAGCCCTACCATTCGCCCGACAATGCCACC
TGCTGTTCACACATCTGCTCACATCACGCCTTGCTACTCGGACCAACACCCTTTCCTATCGCACC
ACACCATCAAGAAACCCTACAACCATCCCTAAACCAAACCCTTTTGCTTTATATTTATTTTCTTT
GAGTTCTTACCAAAGTGAGATACGAAAGCGTTTTCAAGAATCAACAGACGCACCTAGAAAAAGGC
TTTACGCTGAAAGAAAACAACTATAAAGAAAACAACGAAAGTCTGATGC
Found at i:26173459 original size:12 final size:12
Alignment explanation
Indices: 26173444--26173484 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
26173434 ATGCTCGTGA
26173444 AAAAAAGAAAAG
1 AAAAAAGAAAAG
26173456 AAAAAAGAAAAG
1 AAAAAAGAAAAG
*
26173468 AAAAGA-AAAAG
1 AAAAAAGAAAAG
26173479 AAAAAA
1 AAAAAA
26173485 CGAAGAAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:26173468 original size:17 final size:16
Alignment explanation
Indices: 26173446--26173482 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 16
26173436 GCTCGTGAAA
26173446 AAAAGAAAAGAAAAAAG
1 AAAAGAAAAG-AAAAAG
26173463 AAAAGAAAAGAAAAAG
1 AAAAGAAAAGAAAAAG
26173479 AAAA
1 AAAA
26173483 AACGAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAAG
Found at i:26173474 original size:22 final size:25
Alignment explanation
Indices: 26173446--26173493 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 25
26173436 GCTCGTGAAA
26173446 AAAAG-AAAAGAAAAAA-GAA-AAG
1 AAAAGAAAAAGAAAAAACGAAGAAG
26173468 AAAAGAAAAAGAAAAAACGAAGAAG
1 AAAAGAAAAAGAAAAAACGAAGAAG
26173493 A
1 A
26173494 GAACAACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.22
23 11 0.48
24 3 0.13
25 4 0.17
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (25 bp):
AAAAGAAAAAGAAAAAACGAAGAAG
Found at i:26173483 original size:17 final size:16
Alignment explanation
Indices: 26173443--26173483 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 16
26173433 AATGCTCGTG
26173443 AAAAAAAGAAAAGAAA
1 AAAAAAAGAAAAGAAA
26173459 AAAGAAAAGAAAAGAAA
1 AAA-AAAAGAAAAGAAA
26173476 AAGAAAAA
1 AA-AAAAA
26173484 ACGAAGAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 19 0.83
18 1 0.04
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAGAAA
Found at i:26182260 original size:51 final size:50
Alignment explanation
Indices: 26182199--26182438 Score: 257
Period size: 51 Copynumber: 4.7 Consensus size: 50
26182189 ATACTCAGTT
* * * *
26182199 CACATAGTAGCCTACACATAGTACTACACATGTGAGCGTTTTCATCCGATA
1 CACATAGTAGCCTACACATAGTACTACACACGTGATC-CTATCATCCGATA
* * * * *
26182250 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGCTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGATCCTATC-ATCCGATA
* * * * *
26182301 CGCATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTCCGGTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGATCCTATCA-TCCGATA
* * * * * *
26182351 CACGTAGTCGACTACACATAGTACTATACACGTGATCATTTTCATCCGATA
1 CACATAGTAGCCTACACATAGTACTACACACGTGATC-CTATCATCCGATA
26182402 CACATAGTAGCCTACACATAGTACTACACACGTGATC
1 CACATAGTAGCCTACACATAGTACTACACACGTGATC
26182439 TAGCAACTTC
Statistics
Matches: 154, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 38 0.25
51 111 0.72
52 4 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTACACATAGTACTACACACGTGATCCTATCATCCGATA
Found at i:26182384 original size:101 final size:102
Alignment explanation
Indices: 26182199--26182431 Score: 301
Period size: 101 Copynumber: 2.3 Consensus size: 102
26182189 ATACTCAGTT
* * * * *
26182199 CACATAGTAGCCTACACATAGTACTACACATGTGAGCGTTTTCATCCGATACACGTAGTAGCCTG
1 CACATAGTAGCCTACACATAGTACTACACATGCGAGCGCTATCATCCGATACACGTAGTAGACTA
*
26182264 CACATAGTACTACACACGTGATCCAAGCT-ATCCGCTA
66 CACATAGTACTACACACGTGAT-CAAGCTCATCCGATA
* * * *
26182301 CGCATAGTAGCCTGCACATAGTACTACACATGCGA-C-CTATCATTCCGGTACACGTAGTCGACT
1 CACATAGTAGCCTACACATAGTACTACACATGCGAGCGCTATCA-TCCGATACACGTAGTAGACT
* ***
26182364 ACACATAGTACTATACACGTGATCATTTTCATCCGATA
65 ACACATAGTACTACACACGTGATCAAGCTCATCCGATA
26182402 CACATAGTAGCCTACACATAGTACTACACA
1 CACATAGTAGCCTACACATAGTACTACACA
26182432 CGTGATCTAG
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 7 0.06
101 74 0.65
102 32 0.28
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (102 bp):
CACATAGTAGCCTACACATAGTACTACACATGCGAGCGCTATCATCCGATACACGTAGTAGACTA
CACATAGTACTACACACGTGATCAAGCTCATCCGATA
Found at i:26188159 original size:26 final size:26
Alignment explanation
Indices: 26188119--26188198 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
26188109 TGGAGGAAGT
*
26188119 ATACTG-TATTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
26188144 ATACTGATACTGGCAGCTTTACTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * * *
26188170 TTACT-ATTACTAGCAGTTTTGCTGTG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
26188196 ATA
1 ATA
26188199 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
25 7 0.16
26 38 0.84
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.38
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:26188346 original size:28 final size:26
Alignment explanation
Indices: 26188306--26188365 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 26
26188296 ACTGTACTGA
26188306 TACTGTAATGGGCTAAGGCCCACATTG
1 TACTGTAATGGGCTAAGG-CCACATTG
*
26188333 TTACTGTATTGGGCTAAGGCCACATTG
1 -TACTGTAATGGGCTAAGGCCACATTG
26188360 TACTGT
1 TACTGT
26188366 GACTAAATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 6 0.19
27 8 0.26
28 17 0.55
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (26 bp):
TACTGTAATGGGCTAAGGCCACATTG
Found at i:26195318 original size:13 final size:12
Alignment explanation
Indices: 26195281--26195334 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
26195271 CTAATCTTTG
*
26195281 ATTTATTTTTCT
1 ATTTATTTTTTT
26195293 ACTTTATTTATTTT
1 A-TTTATTT-TTTT
26195307 ATTTATTTATTTT
1 ATTTATTT-TTTT
*
26195320 AATTAATTTTTTT
1 -ATTTATTTTTTT
26195333 AT
1 AT
26195335 CTGACTTGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
12 3 0.08
13 23 0.62
14 11 0.30
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTATTTTTTT
Found at i:26195746 original size:14 final size:14
Alignment explanation
Indices: 26195707--26195747 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26195697 AATTCATGAG
26195707 TATCTCTTTCCTTTA
1 TATCTCTTT-CTTTA
*
26195722 T-TCT-ATTCTTTA
1 TATCTCTTTCTTTA
26195734 TATCTCTTTCTTTA
1 TATCTCTTTCTTTA
26195748 ACATTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 6 0.27
13 5 0.23
14 10 0.45
15 1 0.05
ACGTcount: A:0.15, C:0.22, G:0.00, T:0.63
Consensus pattern (14 bp):
TATCTCTTTCTTTA
Found at i:26200467 original size:24 final size:24
Alignment explanation
Indices: 26200440--26200532 Score: 132
Period size: 24 Copynumber: 3.9 Consensus size: 24
26200430 ACACACCACG
*
26200440 TTGTGGCCAAGCCACTCCATAGCA
1 TTGTGGCCAAGCCACTCAATAGCA
* *
26200464 TTGTGGCCAAGCAACTCAATAGCG
1 TTGTGGCCAAGCCACTCAATAGCA
* * *
26200488 TTTTGGTCAAGCCACTCAATAACA
1 TTGTGGCCAAGCCACTCAATAGCA
26200512 TTGTGGCCAAGCCACTCAATA
1 TTGTGGCCAAGCCACTCAATA
26200533 TTGCAGATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (24 bp):
TTGTGGCCAAGCCACTCAATAGCA
Found at i:26217615 original size:25 final size:25
Alignment explanation
Indices: 26217587--26217639 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
26217577 TAACCACAAT
26217587 TATTACAAGCCACTATTCAAAAAAC
1 TATTACAAGCCACTATTCAAAAAAC
26217612 TATTACAAGCCACTATTCAAAAAAC
1 TATTACAAGCCACTATTCAAAAAAC
26217637 TAT
1 TAT
26217640 GGTCTATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (25 bp):
TATTACAAGCCACTATTCAAAAAAC
Found at i:26217628 original size:13 final size:13
Alignment explanation
Indices: 26217587--26217628 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
26217577 TAACCACAAT
26217587 TATTACAAGCCAC
1 TATTACAAGCCAC
***
26217600 TATT-CAAAAAAC
1 TATTACAAGCCAC
26217612 TATTACAAGCCAC
1 TATTACAAGCCAC
26217625 TATT
1 TATT
26217629 CAAAAAACTA
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.29
Consensus pattern (13 bp):
TATTACAAGCCAC
Found at i:26219520 original size:187 final size:184
Alignment explanation
Indices: 26219171--26219530 Score: 447
Period size: 187 Copynumber: 1.9 Consensus size: 184
26219161 GGGTTTAGGT
* * * * * *
26219171 TGTAACAACCTATTTTCAGTGAAATCGAAACAGTGGTTTTGGGACCACAAATCTGACGTGAAAAT
1 TGTAACAACCCATTTTCAGTGAAATCAAAACAGTGGTTTTGAGACCACAAATCTAAAGTCAAAAT
* * *
26219236 ATTTTATTTATTATTTTAATGTCTACCACATGCTAGTACTGCCCTATAAAAATTTCATTAAAAAA
66 ATTTTATTTATTATTTTAATGTCTACCACATGCTAGTACAGCCATAGAAAAATTTCATTAAAAAA
26219301 TTTTATCATTTGCATGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGGTGTA
131 TTTTATCATTTGCATGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGGTGTA
* ** *
26219355 TGTAACATCCCATTTTTGGTGAAATCAAAATAGTGGTTTTGAGACCACAAATAC-AAAGTCAAAA
1 TGTAACAACCCATTTTCAGTGAAATCAAAACAGTGGTTTTGAGACCACAAAT-CTAAAGTCAAAA
* * * * * **
26219419 TATTTATTTTATTATTATTTTAATGTTTA-CAGCATGTTAGTAGAGTCATAGAAAAATTTTGTTA
65 TA-TT-TTAT-TTATTATTTTAATGTCTACCA-CATGCTAGTACAGCCATAGAAAAATTTCATTA
* *
26219483 AGAAATTTTATCATTTGCATGCTTAATT-CGATAAAAAGGACTAAATCG
126 AAAAATTTTATCATTTGCATGCTTAATTAAG-TAAAAAGGACTAAATCG
26219531 CTTAAAATGT
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
184 54 0.36
185 3 0.02
186 6 0.04
187 85 0.57
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (184 bp):
TGTAACAACCCATTTTCAGTGAAATCAAAACAGTGGTTTTGAGACCACAAATCTAAAGTCAAAAT
ATTTTATTTATTATTTTAATGTCTACCACATGCTAGTACAGCCATAGAAAAATTTCATTAAAAAA
TTTTATCATTTGCATGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGGTGTA
Found at i:26229847 original size:109 final size:109
Alignment explanation
Indices: 26229656--26229881 Score: 443
Period size: 109 Copynumber: 2.1 Consensus size: 109
26229646 GTACGAATTA
26229656 TTGATGATCAAAGTATGTATAATCATGTTTATGAAAAGTATGATCATGAAATTTATCTTACCATG
1 TTGATGATCAAAGTATGTATAATCATGTTTATGAAAAGTATGATCATGAAATTTATCTTACCATG
26229721 AGATGATTTTGCTAAGTTATGTGTTTAATCACTAACTTGTGTTG
66 AGATGATTTTGCTAAGTTATGTGTTTAATCACTAACTTGTGTTG
26229765 TTGATGATCAAAGTATGTATAATCATGTTTATGAAAAGTATGATCATGAAATTTATCTTACCATG
1 TTGATGATCAAAGTATGTATAATCATGTTTATGAAAAGTATGATCATGAAATTTATCTTACCATG
26229830 AGATGATTTTGCTAAGTTATGTGTTTAATCACTAACTTGTGTTG
66 AGATGATTTTGCTAAGTTATGTGTTTAATCACTAACTTGTGTTG
*
26229874 TTGCTGAT
1 TTGATGAT
26229882 GCTTAGGCTT
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 116 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (109 bp):
TTGATGATCAAAGTATGTATAATCATGTTTATGAAAAGTATGATCATGAAATTTATCTTACCATG
AGATGATTTTGCTAAGTTATGTGTTTAATCACTAACTTGTGTTG
Found at i:26240429 original size:26 final size:26
Alignment explanation
Indices: 26240373--26240429 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
26240363 CTTTTATGAT
*
26240373 TTTTTTATAAATTTTTTTAATTTTAA
1 TTTTTTATAAATTTTTTTAATTATAA
26240399 TTTTTTATAAATTTTTATTAAATTAT-A
1 TTTTTTATAAATTTTT-TT-AATTATAA
26240426 TTTT
1 TTTT
26240430 GATATAACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 16 0.57
27 7 0.25
28 5 0.18
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTTATAAATTTTTTTAATTATAA
Found at i:26245070 original size:113 final size:113
Alignment explanation
Indices: 26244872--26245189 Score: 557
Period size: 113 Copynumber: 2.8 Consensus size: 113
26244862 CAATGTTATT
*
26244872 TTCCTTACGAATGATCAAATGTTTCACTAGAGAACAAATCACATCGATGTTCAATGTCATTTTAT
1 TTCCTTACAAATGATCAAATGTTTCACTAGAGAACAAATCACATCGATGTTCAATGTCATTTTAT
26244937 ACGTGATATTATTGCTCATGTTGATGTTGTGATAATCAGAGTGTCATC
66 ACGTGATATTATTGCTCATGTTGATGTTGTGATAATCAGAGTGTCATC
26244985 TTCCTTACAAATGATCAAATGTTTCACTAGAGAACAAATCACATCGATGTTCAATGTCATTTTAT
1 TTCCTTACAAATGATCAAATGTTTCACTAGAGAACAAATCACATCGATGTTCAATGTCATTTTAT
*
26245050 ACGTGATATTATTGCTCATGTTGATGTTGTGATAGTCAGAGTGTCATC
66 ACGTGATATTATTGCTCATGTTGATGTTGTGATAATCAGAGTGTCATC
**
26245098 TTCCTTACAAATGATCAAATGTTTCA-TGAGAGAACAAATCACATCGATGTTCGGTGTCATTTTA
1 TTCCTTACAAATGATCAAATGTTTCACT-AGAGAACAAATCACATCGATGTTCAATGTCATTTTA
* * *
26245162 TGCATGATATTATTGCTCATGGTGATGT
65 TACGTGATATTATTGCTCATGTTGATGT
26245190 GAGCAAAGTT
Statistics
Matches: 197, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
112 1 0.01
113 196 0.99
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (113 bp):
TTCCTTACAAATGATCAAATGTTTCACTAGAGAACAAATCACATCGATGTTCAATGTCATTTTAT
ACGTGATATTATTGCTCATGTTGATGTTGTGATAATCAGAGTGTCATC
Found at i:26255030 original size:25 final size:25
Alignment explanation
Indices: 26254977--26255063 Score: 99
Period size: 25 Copynumber: 3.5 Consensus size: 25
26254967 TACCAGTTTT
* *
26254977 AGCTCTTATGAGCTTACCGATACTT-
1 AGCTCGTATGAGCTTACCGTTA-TTC
26255002 AGCTCGTATGAGCTTACCGTTATTC
1 AGCTCGTATGAGCTTACCGTTATTC
* *
26255027 AGCTCAG-AGGAGCTTACCGTTA-AC
1 AGCTC-GTATGAGCTTACCGTTATTC
26255051 AGCTCGTATGAGC
1 AGCTCGTATGAGC
26255064 ATACATGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 13 0.24
25 39 0.72
26 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCGTTATTC
Found at i:26260342 original size:20 final size:20
Alignment explanation
Indices: 26260302--26260342 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26260292 ATCAAAACAC
**
26260302 AAGAAAATATCGATACCATT
1 AAGAAAATATCGATAAAATT
*
26260322 AAGAAAGTATCGATAAAATT
1 AAGAAAATATCGATAAAATT
26260342 A
1 A
26260343 CCCCTAAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (20 bp):
AAGAAAATATCGATAAAATT
Found at i:26273324 original size:21 final size:21
Alignment explanation
Indices: 26273298--26273340 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
26273288 CTAATGAAAT
26273298 CCATTTTC-TTCAGTTTTCTCA
1 CCATTTTCATT-AGTTTTCTCA
26273319 CCATTTTCATTAGTTTTCTCA
1 CCATTTTCATTAGTTTTCTCA
26273340 C
1 C
26273341 TAAACAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.16, C:0.28, G:0.05, T:0.51
Consensus pattern (21 bp):
CCATTTTCATTAGTTTTCTCA
Found at i:26275719 original size:68 final size:68
Alignment explanation
Indices: 26275637--26275775 Score: 199
Period size: 68 Copynumber: 2.0 Consensus size: 68
26275627 CATTTATTTA
* *
26275637 TTGCCATATCCGAGCTATGGTCTTACACCTTATAAC-CCTATGTTTAGTGTCCTAGCAAACTCTA
1 TTGCCATAGCCGAGCTATGGTCTTACACCTTATAACACC-ATGTTTAATGTCCTAGCAAACTCTA
26275701 TTGG
65 TTGG
* * * * *
26275705 TTGCCATAGCCGAGCTATGGTCTTACACCTTGTAACACCATGTTTAATGTCTTGGTAGACTCTAT
1 TTGCCATAGCCGAGCTATGGTCTTACACCTTATAACACCATGTTTAATGTCCTAGCAAACTCTAT
26275770 TGG
66 TGG
26275773 TTG
1 TTG
26275776 TGTAACATCC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
68 61 0.97
69 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (68 bp):
TTGCCATAGCCGAGCTATGGTCTTACACCTTATAACACCATGTTTAATGTCCTAGCAAACTCTAT
TGG
Found at i:26276617 original size:29 final size:29
Alignment explanation
Indices: 26276580--26276638 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
26276570 TCTGAGCTTT
*
26276580 GGGGAAAAAGTGTAATTATGTAAAAGTTA
1 GGGGAAAAAGTGTAATTATATAAAAGTTA
* * *
26276609 GGGGCAAAATTGTAATTTTATAAAAGTTA
1 GGGGAAAAAGTGTAATTATATAAAAGTTA
26276638 G
1 G
26276639 AGTTGAGGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.31
Consensus pattern (29 bp):
GGGGAAAAAGTGTAATTATATAAAAGTTA
Found at i:26277132 original size:50 final size:50
Alignment explanation
Indices: 26277027--26277167 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 50
26277017 TCATTGAGAT
* * ** * *
26277027 TATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGTGTTGGCGCTGA
1 TATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCCCTGA
* **
26277077 GATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCT-A
1 TATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGC-CCTGA
** * * *
26277127 TATGAGAACTCCCATGTAAGACCATATTTTGGATATGGCAT
1 TATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCAT
26277168 TTTTAGTACA
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
50 71 0.97
51 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (50 bp):
TATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCCCTGA
Found at i:26285396 original size:47 final size:47
Alignment explanation
Indices: 26285342--26285434 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
26285332 ACCTAAGTGC
26285342 GAGACAAGAGGGAATAGAGAGATTCAGTCAAGTTGTCTAGGAATAGA
1 GAGACAAGAGGGAATAGAGAGATTCAGTCAAGTTGTCTAGGAATAGA
*
26285389 GAGACAAGAGGGAATAGAGAGATTCGGTCAAGTTGTCTAGGAATAG
1 GAGACAAGAGGGAATAGAGAGATTCAGTCAAGTTGTCTAGGAATAG
26285435 TATTCTCCAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.19
Consensus pattern (47 bp):
GAGACAAGAGGGAATAGAGAGATTCAGTCAAGTTGTCTAGGAATAGA
Found at i:26293638 original size:21 final size:21
Alignment explanation
Indices: 26293613--26293653 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26293603 AGTAAGCTAC
* *
26293613 TGCTGCAGAAGAGGAAGTTGT
1 TGCTGAAGAAGAAGAAGTTGT
26293634 TGCTGAAGAAGAAGAAGTTG
1 TGCTGAAGAAGAAGAAGTTG
26293654 CTGAAGATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.37, T:0.22
Consensus pattern (21 bp):
TGCTGAAGAAGAAGAAGTTGT
Found at i:26307207 original size:17 final size:16
Alignment explanation
Indices: 26307185--26307218 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26307175 GGGGATGGCG
26307185 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
26307202 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
26307218 T
1 T
26307219 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:26309111 original size:22 final size:22
Alignment explanation
Indices: 26309085--26309129 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26309075 ATTATATGTA
26309085 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
26309107 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
26309129 T
1 T
26309130 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:26315925 original size:5 final size:5
Alignment explanation
Indices: 26315903--26315983 Score: 56
Period size: 5 Copynumber: 15.6 Consensus size: 5
26315893 TTTTATTGAA
* * ** *
26315903 TTTAT CTTTAT CTTTAT TTTAT TTTAT TTTAGT TTTTT TTTGT TCAAG
1 TTTAT -TTTAT -TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT
* *
26315951 CTTGT TTTAT TTT-T ATTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT -TTTAT TTTAT TTTAT TTT
26315984 GCAGAATAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
4 1 0.02
5 42 0.71
6 16 0.27
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:26324022 original size:5 final size:5
Alignment explanation
Indices: 26324012--26324036 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26324002 AGCTTGTTTT
26324012 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
26324037 TTTGTTGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:26334498 original size:40 final size:40
Alignment explanation
Indices: 26334454--26334531 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
26334444 AAAAATGCCA
*
26334454 CTATAGATCGAACATTAGCGGCATTTTTTGAAAAACACTG
1 CTATAGATCGAACATTAGCGGCACTTTTTGAAAAACACTG
* * * *
26334494 CTATATATTGAGCATTAGCGGCGCTTTTTGAAAAACAC
1 CTATAGATCGAACATTAGCGGCACTTTTTGAAAAACAC
26334532 CGCAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (40 bp):
CTATAGATCGAACATTAGCGGCACTTTTTGAAAAACACTG
Found at i:26334602 original size:75 final size:75
Alignment explanation
Indices: 26334505--26334678 Score: 258
Period size: 75 Copynumber: 2.3 Consensus size: 75
26334495 TATATATTGA
*
26334505 GCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAATTAAGAACAACGCCGTCGTTTTATGTTG
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAATTAAGAACAACGCCGCCGTTTTATGTTG
26334570 AGCTTTAGTG
66 AGCTTTAGTG
* * * * * * * *
26334580 GTATTAGAGGCACTTTTTGAAAAACGCGGCAAAAAAATTCAGCACAATGCCGCCGTTTTATGTTG
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAATTAAGAACAACGCCGCCGTTTTATGTTG
26334645 AGCTTTAGTG
66 AGCTTTAGTG
*
26334655 GCATTAGCGGTGCTTTTTGAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAA
26334679 TGTCGCTATA
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 86 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (75 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAATTAAGAACAACGCCGCCGTTTTATGTTG
AGCTTTAGTG
Found at i:26335098 original size:7 final size:7
Alignment explanation
Indices: 26335088--26335271 Score: 70
Period size: 7 Copynumber: 25.9 Consensus size: 7
26335078 TATTATTATA
26335088 GTTTAGG
1 GTTTAGG
*
26335095 GTTTATG
1 GTTTAGG
26335102 GTTTAGG
1 GTTTAGG
* *
26335109 GTATATG
1 GTTTAGG
26335116 GTTTAGG
1 GTTTAGG
*
26335123 GTTTAAG
1 GTTTAGG
*
26335130 GTTTAAG
1 GTTTAGG
*
26335137 GTTTAAGA
1 GTTT-AGG
26335145 GTTACTA--
1 GTT--TAGG
* *
26335152 TTTTAAG
1 GTTTAGG
*
26335159 GTTTATG
1 GTTTAGG
*
26335166 GATTATGG
1 GTTTA-GG
26335174 GTTTAGG
1 GTTTAGG
* *
26335181 GATTATG
1 GTTTAGG
**
26335188 GTTTATA
1 GTTTAGG
*
26335195 GTTTATG
1 GTTTAGG
26335202 GTTTAAGG
1 GTTT-AGG
*
26335210 G-TTGGG
1 GTTTAGG
**
26335216 GTTTAAA
1 GTTTAGG
26335223 GTTTAGG
1 GTTTAGG
* *
26335230 GGTTAGAA
1 GTTTAG-G
* *
26335238 GTTAAGA
1 GTTTAGG
26335245 G-TTAGG
1 GTTTAGG
*
26335251 GGTTAGGG
1 GTTTA-GG
26335259 GTTTAGG
1 GTTTAGG
26335266 GTTTAG
1 GTTTAG
26335272 ATTAATTAGT
Statistics
Matches: 132, Mismatches: 34, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
5 2 0.02
6 7 0.05
7 99 0.75
8 22 0.17
9 1 0.01
10 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.34, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:26335105 original size:14 final size:14
Alignment explanation
Indices: 26335083--26335212 Score: 93
Period size: 14 Copynumber: 9.1 Consensus size: 14
26335073 TTAATTATTA
*
26335083 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
26335097 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
26335111 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
26335125 TTAAGGTTTAAGGT
1 TTATGGTTTAGGGT
* *
26335139 TTAAGAGTTACTA--TT
1 TTATG-GTT--TAGGGT
* * *
26335154 TTAAGGTTTATGGA
1 TTATGGTTTAGGGT
*
26335168 TTATGGGTTTAGGGA
1 TTAT-GGTTTAGGGT
**
26335183 TTATGGTTTATAGT
1 TTATGGTTTAGGGT
26335197 TTATGGTTTAAGGGT
1 TTATGGTTT-AGGGT
26335212 T
1 T
26335213 GGGGTTTAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
12 2 0.02
14 64 0.68
15 26 0.28
17 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:26336290 original size:40 final size:40
Alignment explanation
Indices: 26336234--26336495 Score: 301
Period size: 40 Copynumber: 6.5 Consensus size: 40
26336224 AATTATTGAA
* * *
26336234 TGATTACACTTGCGTGCCCTTGTTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* *
26336274 TGATTGCACTTACGTGCCCATGTTTGAACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* * ** ** *
26336314 T-AGTTGCACTTATGTTCCCCTACTTGTACTTTGGCACCCC
1 TGA-TTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* *
26336354 TGATTGCACTTACATGCCCCTGTTTGTACTTTAGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* * * *
26336394 TGATTGCACTTACATGCCCCTATTTGTATTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* *
26336434 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
* * *
26336474 TGGTTGCACTTCCGTGCTCCTG
1 TGATTGCACTTACGTGCCCCTG
26336496 GTTATACTCT
Statistics
Matches: 189, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 187 0.99
41 1 0.01
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:26336413 original size:20 final size:20
Alignment explanation
Indices: 26336234--26336495 Score: 108
Period size: 20 Copynumber: 13.1 Consensus size: 20
26336224 AATTATTGAA
* * *
26336234 TGATTACACTTGCGTGCCCT
1 TGATTGCACTTACGTGCCCC
* * *
26336254 TGTTTGTACTT-CAGTACCCC
1 TGATTGCACTTAC-GTGCCCC
*
26336274 TGATTGCACTTACGTGCCCA
1 TGATTGCACTTACGTGCCCC
* * *
26336294 TGTTTGAACTT-CAGTACCCC
1 TGATTGCACTTAC-GTGCCCC
* *
26336314 T-AGTTGCACTTATGTTCCCC
1 TGA-TTGCACTTACGTGCCCC
* ** **
26336334 T-ACTTGTACTTTGGCACCCC
1 TGA-TTGCACTTACGTGCCCC
*
26336354 TGATTGCACTTACATGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
26336374 TGTTTGTACTTTA-GTACCCC
1 TGATTGCAC-TTACGTGCCCC
*
26336394 TGATTGCACTTACATGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
26336414 T-ATTTGTA-TTTCGGTACCCC
1 TGA-TTGCACTTAC-GTGCCCC
26336434 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * * *
26336454 TGTTTGTACTT-CGGTACCCT
1 TGATTGCACTTAC-GTGCCCC
* * *
26336474 TGGTTGCACTTCCGTGCTCC
1 TGATTGCACTTACGTGCCCC
26336494 TG
1 TG
26336496 GTTATACTCT
Statistics
Matches: 175, Mismatches: 53, Indels: 28
0.68 0.21 0.11
Matches are distributed among these distances:
19 10 0.06
20 155 0.89
21 10 0.06
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (20 bp):
TGATTGCACTTACGTGCCCC
Found at i:26338046 original size:30 final size:30
Alignment explanation
Indices: 26338006--26338064 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
26337996 GTGTCTCAAC
26338006 TGTGTATGACACACAGCCATGCGACACGAT
1 TGTGTATGACACACAGCCATGCGACACGAT
* *
26338036 TGTGTGTGACACAGAGCCATGCGACACGA
1 TGTGTATGACACACAGCCATGCGACACGA
26338065 CCGTGTGTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.27, T:0.19
Consensus pattern (30 bp):
TGTGTATGACACACAGCCATGCGACACGAT
Found at i:26338071 original size:30 final size:30
Alignment explanation
Indices: 26338007--26338072 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
26337997 TGTCTCAACT
* **
26338007 GTGTATGACACACAGCCATGCGACACGATT
1 GTGTGTGACACACAGCCATGCGACACGACC
*
26338037 GTGTGTGACACAGAGCCATGCGACACGACC
1 GTGTGTGACACACAGCCATGCGACACGACC
26338067 GTGTGT
1 GTGTGT
26338073 CCCCTATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.20
Consensus pattern (30 bp):
GTGTGTGACACACAGCCATGCGACACGACC
Found at i:26338126 original size:12 final size:12
Alignment explanation
Indices: 26338113--26338161 Score: 89
Period size: 12 Copynumber: 4.1 Consensus size: 12
26338103 GCATTTACAT
*
26338113 GGCCTAGCACAT
1 GGCCTAGCACAC
26338125 GGCCTAGCACAC
1 GGCCTAGCACAC
26338137 GGCCTAGCACAC
1 GGCCTAGCACAC
26338149 GGCCTAGCACAC
1 GGCCTAGCACAC
26338161 G
1 G
26338162 ACCTGACACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.24, C:0.39, G:0.27, T:0.10
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:26338145 original size:24 final size:24
Alignment explanation
Indices: 26338113--26338174 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
26338103 GCATTTACAT
26338113 GGCCTAGCACATGGCCTAGCACAC
1 GGCCTAGCACATGGCCTAGCACAC
*
26338137 GGCCTAGCACACGGCCTAGCACAC
1 GGCCTAGCACATGGCCTAGCACAC
*
26338161 GACCT-GACACATGG
1 GGCCTAG-CACATGG
26338175 GCATGTGAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 1 0.03
24 33 0.97
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (24 bp):
GGCCTAGCACATGGCCTAGCACAC
Found at i:26344745 original size:14 final size:15
Alignment explanation
Indices: 26344728--26344756 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26344718 GTGGTAAGTC
26344728 AATTATTCA-TCATG
1 AATTATTCATTCATG
26344742 AATTATTCATTCATG
1 AATTATTCATTCATG
26344757 TGCTCCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (15 bp):
AATTATTCATTCATG
Found at i:26359466 original size:13 final size:13
Alignment explanation
Indices: 26359448--26359477 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26359438 TATTCAATAG
26359448 TACAAACTGTAAT
1 TACAAACTGTAAT
*
26359461 TACAAATTGTAAT
1 TACAAACTGTAAT
26359474 TACA
1 TACA
26359478 CAGTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (13 bp):
TACAAACTGTAAT
Found at i:26360510 original size:20 final size:20
Alignment explanation
Indices: 26360487--26360525 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26360477 ATGTAAATTA
26360487 ATTTTATAATATACTTTTTT
1 ATTTTATAATATACTTTTTT
26360507 ATTTTATAATATACTTTTT
1 ATTTTATAATATACTTTTT
26360526 GACCACGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTATAATATACTTTTTT
Found at i:26365429 original size:19 final size:19
Alignment explanation
Indices: 26365384--26365430 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
26365374 ACTCTCAATC
26365384 TCTTTTTGCTCTTTTTCAT
1 TCTTTTTGCTCTTTTTCAT
* *
26365403 TCTCTTTTTCT-TTTTTGATT
1 TCT-TTTTGCTCTTTTTCA-T
26365423 TCTTTTTG
1 TCTTTTTG
26365431 TGTCTTGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.04, C:0.17, G:0.06, T:0.72
Consensus pattern (19 bp):
TCTTTTTGCTCTTTTTCAT
Found at i:26388918 original size:61 final size:61
Alignment explanation
Indices: 26388823--26388939 Score: 198
Period size: 61 Copynumber: 1.9 Consensus size: 61
26388813 AATTAATCAC
* * *
26388823 ATTAATATTATATTAATAAAATATTATCTAGATAAATATTAAATTAAATTTAATATCTCAT
1 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATATCTCAT
*
26388884 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTTAATTTAATAT
1 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATAT
26388940 TAAATTCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATATCTCAT
Found at i:26399851 original size:61 final size:61
Alignment explanation
Indices: 26399756--26399872 Score: 198
Period size: 61 Copynumber: 1.9 Consensus size: 61
26399746 AATTAATCAC
* * *
26399756 ATTAATATTATATTAATAAAATATTATCTAGATAAATATTAAATTAAATTTAATATCTCAT
1 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATATCTCAT
*
26399817 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTTAATTTAATAT
1 ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATAT
26399873 TAAATTCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
ATTAATATTACATTAATAAAATACTATCTAGATAAATACTAAATTAAATTTAATATCTCAT
Found at i:26413112 original size:18 final size:18
Alignment explanation
Indices: 26413089--26413126 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26413079 CCGAGTGGGT
*
26413089 CACATGAGCATGTGGGCC
1 CACATGAGCATGTGAGCC
*
26413107 CACATGGGCATGTGAGCC
1 CACATGAGCATGTGAGCC
26413125 CA
1 CA
26413127 TTATTACTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.16
Consensus pattern (18 bp):
CACATGAGCATGTGAGCC
Found at i:26425214 original size:71 final size:71
Alignment explanation
Indices: 26425065--26425220 Score: 186
Period size: 71 Copynumber: 2.2 Consensus size: 71
26425055 TTGGCTTAGG
* * * * * * * *
26425065 ACTTCTATCGATACCTTAAGGACTTCGATCGAAACAAGTCTAGTTAGTAGCCAAATTTTAGCATC
1 ACTTCTACCGATACCTTAAGGACTTCGACCAAAACAAGTCAAGTCAATAGCCAAAGTTCAGCATC
*
26425130 TCCTGC
66 CCCTGC
* * *
26425136 ACCTCTACCGATACCTTAAGGACTTCTACCAAAACAATTCAAGTCAATAGCCAAAGTTCAGCATC
1 ACTTCTACCGATACCTTAAGGACTTCGACCAAAACAAGTCAAGTCAATAGCCAAAGTTCAGCATC
26425201 CCCTGC
66 CCCTGC
* *
26425207 ATTTCTACCTATAC
1 ACTTCTACCGATAC
26425221 TCTGATGGGT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (71 bp):
ACTTCTACCGATACCTTAAGGACTTCGACCAAAACAAGTCAAGTCAATAGCCAAAGTTCAGCATC
CCCTGC
Found at i:26436517 original size:63 final size:63
Alignment explanation
Indices: 26436441--26436566 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
26436431 TTTTTAAGAC
*
26436441 ATAAAGTGGGTCATGCATGATTAAATTAAATAATAAAATATAAAATTATATTTAATAATTTAT
1 ATAAAGTCGGTCATGCATGATTAAATTAAATAATAAAATATAAAATTATATTTAATAATTTAT
26436504 ATAAAGTCGGTCATGCATGATTAAATTAAATAATAAAATATAAAATTATATTTAATAATTTAT
1 ATAAAGTCGGTCATGCATGATTAAATTAAATAATAAAATATAAAATTATATTTAATAATTTAT
26436567 TTTAAAATAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (63 bp):
ATAAAGTCGGTCATGCATGATTAAATTAAATAATAAAATATAAAATTATATTTAATAATTTAT
Found at i:26438362 original size:36 final size:36
Alignment explanation
Indices: 26438322--26438390 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
26438312 GACATCATAG
* *
26438322 ATGCAGGGCACG-CTAACGTTGTTAAGAATGATACTT
1 ATGCAGGGCA-GACTAACGTTATTAAAAATGATACTT
26438358 ATGCAGGGCAGACTAACGTTATTAAAAATGATA
1 ATGCAGGGCAGACTAACGTTATTAAAAATGATA
26438391 TTTTACAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (36 bp):
ATGCAGGGCAGACTAACGTTATTAAAAATGATACTT
Found at i:26439365 original size:28 final size:28
Alignment explanation
Indices: 26439322--26439376 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
26439312 GAGTAAGGAT
26439322 TAAGGAAATCACTGAATCAACATAATCA
1 TAAGGAAATCACTGAATCAACATAATCA
* *
26439350 TAAGGAAATCATTGAATCTACATAATC
1 TAAGGAAATCACTGAATCAACATAATC
26439377 CTGGACTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.25
Consensus pattern (28 bp):
TAAGGAAATCACTGAATCAACATAATCA
Found at i:26440404 original size:31 final size:30
Alignment explanation
Indices: 26440349--26440408 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
26440339 AGTTACAAAA
* * *
26440349 TAGTCATCCAACTATTCCACTTTTTCTTTTT
1 TAGTCACCCAACTATTCAAATTTTT-TTTTT
*
26440380 TAGTCACCCAACTATTTAAATTTTTTTTT
1 TAGTCACCCAACTATTCAAATTTTTTTTT
26440409 AATCACCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.23, C:0.22, G:0.03, T:0.52
Consensus pattern (30 bp):
TAGTCACCCAACTATTCAAATTTTTTTTTT
Done.