Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 91 of 207
Found at i:26802807 original size:13 final size:13
Alignment explanation
Indices: 26802789--26802821 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
26802779 AATGGCATAA
26802789 AAATAATATAAAC-
1 AAATAA-ATAAACG
26802802 AAATAAATAAACG
1 AAATAAATAAACG
26802815 AAATAAA
1 AAATAAA
26802822 AAAATAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (13 bp):
AAATAAATAAACG
Found at i:26805734 original size:13 final size:13
Alignment explanation
Indices: 26805679--26805737 Score: 50
Period size: 13 Copynumber: 4.3 Consensus size: 13
26805669 TTGGAGTAAC
26805679 AAAAAAA-TC-AA
1 AAAAAAATTCAAA
26805690 AAAAAAATTCGAAAA
1 AAAAAAATTC--AAA
*
26805705 AAAAAATTGATTGAAA
1 AAAAAA---ATTCAAA
26805721 AAAAAAATTCAAA
1 AAAAAAATTCAAA
26805734 AAAA
1 AAAA
26805738 GTGAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
11 7 0.18
12 2 0.05
13 10 0.26
15 8 0.21
16 9 0.23
18 3 0.08
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.15
Consensus pattern (13 bp):
AAAAAAATTCAAA
Found at i:26805760 original size:26 final size:26
Alignment explanation
Indices: 26805731--26805789 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
26805721 AAAAAAATTC
* *
26805731 AAAAAAAGTGAAAAAAAA-TTGAGCAA
1 AAAAAAAG-AAAAAAAAAGGTGAGCAA
26805757 AAAAAAAGAAAAAAAAAGGTGAGCAA
1 AAAAAAAGAAAAAAAAAGGTGAGCAA
26805783 AAAAAAA
1 AAAAAAA
26805790 TCAAGTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 8 0.27
26 22 0.73
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (26 bp):
AAAAAAAGAAAAAAAAAGGTGAGCAA
Found at i:26806818 original size:6 final size:6
Alignment explanation
Indices: 26806809--26806927 Score: 60
Period size: 6 Copynumber: 19.2 Consensus size: 6
26806799 GAAAGAGATT
** * * **
26806809 GAAAAA GAAATT GAAAGAA AAAAAAA GAAAAC GAAAAA GAAAAA -AAATT
1 GAAAAA GAAAAA GAAA-AA GAA-AAA GAAAAA GAAAAA GAAAAA GAAAAA
* ** ** * *
26806858 GCAAAA GAAAAA GAAATC GAAAAA GTGAGA GAAAAA GAAAAT GAAGAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA G-A-AAAA
*
26806908 GAAAATT GAAAAA GAAAAA G
1 GAAAA-A GAAAAA GAAAAA G
26806928 CGAAAAAAGA
Statistics
Matches: 79, Mismatches: 28, Indels: 12
0.66 0.24 0.10
Matches are distributed among these distances:
5 3 0.04
6 58 0.73
7 13 0.16
8 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (6 bp):
GAAAAA
Found at i:26806844 original size:20 final size:20
Alignment explanation
Indices: 26806810--26806854 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26806800 AAAGAGATTG
**
26806810 AAAAAGAAATTGAAAGAA-AA
1 AAAAAGAAAACGAAA-AAGAA
26806830 AAAAAGAAAACGAAAAAGAA
1 AAAAAGAAAACGAAAAAGAA
26806850 AAAAA
1 AAAAA
26806855 ATTGCAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04
Consensus pattern (20 bp):
AAAAAGAAAACGAAAAAGAA
Found at i:26806846 original size:7 final size:6
Alignment explanation
Indices: 26806822--26806927 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
26806812 AAAGAAATTG
* ** *
26806822 AAAG-A AAA-AA AAAGAA AACGAA AAAGAA AAA-AA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
26806867 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
26806918 AAAGAA AAAG
1 AAAGAA AAAG
26806928 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 22, Indels: 11
0.69 0.21 0.10
Matches are distributed among these distances:
5 10 0.14
6 52 0.71
7 7 0.10
8 4 0.05
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:26806853 original size:39 final size:38
Alignment explanation
Indices: 26806810--26806944 Score: 105
Period size: 42 Copynumber: 3.4 Consensus size: 38
26806800 AAAGAGATTG
26806810 AAAAAGAAATTGAAAGAAAAAAAAAGAAAACGAAAAAG-
1 AAAAAGAAATTG-AAGAAAAAAAAAGAAAACGAAAAAGA
* * *
26806848 AAAAA-AAATTGCA-AAAGAAAAAGAAATCGAAAAAGTGAGA
1 AAAAAGAAATTGAAGAAAAAAAAAGAAAACG-AAAA---AGA
* * *
26806888 GAAAAAGAAAATGAAGAAAAGAAAATTGAAAAAGAAAAAGCGA
1 -AAAAAGAAATTGAAGAAAA-AAAA-AGAAAACGAAAAA--GA
26806931 AAAAAGAAATTGAA
1 AAAAAGAAATTGAA
26806945 AGAGAGCTTG
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
35 14 0.19
36 5 0.07
37 6 0.08
38 5 0.07
39 2 0.03
41 6 0.08
42 19 0.25
43 5 0.07
44 8 0.11
45 5 0.07
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (38 bp):
AAAAAGAAATTGAAGAAAAAAAAAGAAAACGAAAAAGA
Found at i:26806867 original size:23 final size:22
Alignment explanation
Indices: 26806822--26806873 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
26806812 AAAGAAATTG
26806822 AAAGAAAAAAAAAGAAAACGAA
1 AAAGAAAAAAAAAGAAAACGAA
*
26806844 AAAGAAAAAAAATTGCAAAA-GAA
1 AAAGAAAAAAAA-AG-AAAACGAA
26806867 AAAGAAA
1 AAAGAAA
26806874 TCGAAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 12 0.44
23 11 0.41
24 4 0.15
ACGTcount: A:0.79, C:0.04, G:0.13, T:0.04
Consensus pattern (22 bp):
AAAGAAAAAAAAAGAAAACGAA
Found at i:26806909 original size:14 final size:13
Alignment explanation
Indices: 26806888--26806925 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
26806878 AAAAGTGAGA
26806888 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
26806900 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
26806915 GAAAAAGAAAA
1 GAAAAAGAAAA
26806926 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:26806939 original size:21 final size:21
Alignment explanation
Indices: 26806889--26806939 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
26806879 AAAGTGAGAG
*
26806889 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
26806910 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
26806931 AAAAAGAAA
1 AAAAAGAAA
26806940 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:26806979 original size:33 final size:33
Alignment explanation
Indices: 26806942--26807004 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
26806932 AAAAGAAATT
26806942 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
26806975 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
26807005 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:26810439 original size:5 final size:5
Alignment explanation
Indices: 26810431--26810462 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
26810421 ATAAATCTGC
*
26810431 TTGAT TTGAT TTGAT TTGAT TTGAT TTTAT TT
1 TTGAT TTGAT TTGAT TTGAT TTGAT TTGAT TT
26810463 CCTTTCTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.66
Consensus pattern (5 bp):
TTGAT
Found at i:26811294 original size:44 final size:44
Alignment explanation
Indices: 26811203--26811312 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 44
26811193 CGGCTTTAAC
* *
26811203 CTGCTCCACTGCAACTTCAAGGAGGTAAGATTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTC-AGGAGGTAAAACTTGCCATCTTCAGT
**
26811248 CTGC-CTCACTGCAACTTCAGGAGGATAAAACTTGCTTTCTT-AGT
1 CTGCTC-CACTGCAACTTCAGGAGG-TAAAACTTGCCATCTTCAGT
*
26811292 CTGCTCCAGTGCAACTTCAGG
1 CTGCTCCACTGCAACTTCAGG
26811313 GAAATAAGAC
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
44 28 0.49
45 29 0.51
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGAGGTAAAACTTGCCATCTTCAGT
Found at i:26811491 original size:217 final size:217
Alignment explanation
Indices: 26810855--26811625 Score: 1062
Period size: 217 Copynumber: 3.5 Consensus size: 217
26810845 CTTCAATCTA
* * * *** * *
26810855 CTCCTCTGCAACTTCAGGGAGGTAAGACTAGATGTGATCTGCTCTCTGTGACTTCAGAGAGTTAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
* * * * * *
26810920 GATCCAAGATTTGTGGTTCTAATCCGCTCCATTGCAACTTCA-AGGAGATAGGATTATTGGTTTT
66 GATCCAAG----GT--TT-TAATCCACTCCACTACAACTTCAGA-AAGATAGGATTATCGGCTTT
* * * * * *
26810984 AATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGTCATCTTTAGTCTGCCTCACTGCAACTT
123 AACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
* *
26811049 CAGGAGGATAATACTTGCTTACTTAGTCTG
188 CAGGAGGATAAAACTTGCTTTCTTAGTCTG
* * * * * *
26811079 GTCCATTGCAACTTCAAGGAGATAAGACTAGATGCGATATGCTCTTTACAACTTCAAAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
*
26811144 GATCCAAGGTTTTAATCCACT-CACTACAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCT
66 GATCCAAGGTTTTAATCCACTCCACTACAACTTCAGAAAGATAGGATTATCGGCTTTAACCTGCT
*
26811208 CCACTGCAACTTCA-AGGAGGTAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
131 CCACTGCAACTTCAGA-GAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
26811272 ATAAAACTTGCTTTCTTAGTCTG
195 ATAAAACTTGCTTTCTTAGTCTG
* * *
26811295 CTCCAGTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
*
26811360 GATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAACCTGCT
66 GATCCAAGGTTTTAATCCACTCCACTACAACTTCAGAAAGATAGGATTATCGGCTTTAACCTGCT
*
26811425 CCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTTAGGAGGA
131 CCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
* **
26811490 TAAGACTTAATTTCTTAGTCTG
196 TAAAACTTGCTTTCTTAGTCTG
26811512 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
* * **
26811577 GATCCAAGGTTTTAATCCACCCCACTACAACTTTAGGGAGATAGGATTA
66 GATCCAAGGTTTTAATCCACTCCACTACAACTTCAGAAAGATAGGATTA
26811626 CTAGCTACTG
Statistics
Matches: 490, Mismatches: 53, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
216 191 0.39
217 235 0.48
218 3 0.01
220 2 0.00
224 59 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (217 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
GATCCAAGGTTTTAATCCACTCCACTACAACTTCAGAAAGATAGGATTATCGGCTTTAACCTGCT
CCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAAACTTGCTTTCTTAGTCTG
Found at i:26811525 original size:44 final size:46
Alignment explanation
Indices: 26811203--26811540 Score: 173
Period size: 44 Copynumber: 7.7 Consensus size: 46
26811193 CGGCTTTAAC
* **
26811203 CTGCTCCACTGCAACTTCAAGGAG-G-TAAGATTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTC-AGGAGAGATAAGACTTAACATCTTCAGT
* * *
26811248 CTGC-CTCACTGCAACTTCAGGAG-GATAAAACTT-GCTTTCTT-AGT
1 CTGCTC-CACTGCAACTTCAGGAGAGATAAGACTTAAC-ATCTTCAGT
* * * *
26811292 CTGCTCCAGTGCAACTTCAGG-GAAATAAGAC-T-AGA--TGC-GAT
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTAACATCTTCAG-T
* * ** * *
26811333 CTGCT-CTCTGCAACTTCA-GAGAGATAAGA-TCCAAGGT-TTTAAT
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACT-TAACATCTTCAGT
** * * * ** * **
26811376 CCACTCCACTGCAACTTCA-GAAAGATAGGA-TTATCGGCTTTAAC
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTAACATCTTCAGT
* **
26811420 CTGCTCCACTGCAACTTCA-GAGAGATAAGATTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTAACATCTTCAGT
* **
26811465 CTGC-CTCACTGCAACTTTAGGAG-GATAAGACTTAATTTCTT-AGT
1 CTGCTC-CACTGCAACTTCAGGAGAGATAAGACTTAACATCTTCAGT
26811509 CTGCTCCACTGCAACTTCAGG-GAGATAAGACT
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACT
26811541 AGATGCGATC
Statistics
Matches: 226, Mismatches: 47, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
39 1 0.00
40 21 0.09
41 6 0.03
42 2 0.01
43 10 0.04
44 119 0.53
45 64 0.28
46 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (46 bp):
CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTAACATCTTCAGT
Found at i:26823481 original size:15 final size:15
Alignment explanation
Indices: 26823472--26823504 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26823462 CAAATGCTAT
26823472 AATAATAAATACAAC
1 AATAATAAATACAAC
*
26823487 AATAATAAATACATC
1 AATAATAAATACAAC
26823502 AAT
1 AAT
26823505 GGCATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:26823530 original size:13 final size:12
Alignment explanation
Indices: 26823512--26823550 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
26823502 AATGGCATAA
26823512 AAATAATATAAAC
1 AAATAA-ATAAAC
26823525 AAATAAATAAAC
1 AAATAAATAAAC
26823537 GAAATAAA-AAAC
1 -AAATAAATAAAC
26823549 AA
1 AA
26823551 TAATCCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.08
12 10 0.40
13 13 0.52
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.15
Consensus pattern (12 bp):
AAATAAATAAAC
Found at i:26824994 original size:5 final size:5
Alignment explanation
Indices: 26824984--26825015 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
26824974 AGAAATCTGC
*
26824984 TTGAT TTGAT TTGAT TTGAT TTGAT TCGAT TT
1 TTGAT TTGAT TTGAT TTGAT TTGAT TTGAT TT
26825016 TCTTTCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.19, C:0.03, G:0.19, T:0.59
Consensus pattern (5 bp):
TTGAT
Found at i:26825423 original size:8 final size:8
Alignment explanation
Indices: 26825410--26825435 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26825400 TCTGTTTGAA
26825410 AATTTTAC
1 AATTTTAC
26825418 AATTTTAC
1 AATTTTAC
26825426 AATTTTAC
1 AATTTTAC
26825434 AA
1 AA
26825436 ACGAATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (8 bp):
AATTTTAC
Found at i:26827645 original size:7 final size:7
Alignment explanation
Indices: 26827633--26827657 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26827623 GAACCTCACC
26827633 TGTTCGA
1 TGTTCGA
26827640 TGTTCGA
1 TGTTCGA
26827647 TGTTCGA
1 TGTTCGA
26827654 TGTT
1 TGTT
26827658 GTAGCATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.28, T:0.48
Consensus pattern (7 bp):
TGTTCGA
Found at i:26832430 original size:24 final size:24
Alignment explanation
Indices: 26832397--26832443 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
26832387 TTCTAGAAGA
* *
26832397 TTTAGTATTTATGAGTATAATATG
1 TTTAGCATTTATGAGCATAATATG
*
26832421 TTTAGCATTTATTAGCATAATAT
1 TTTAGCATTTATGAGCATAATAT
26832444 ATTTGACTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (24 bp):
TTTAGCATTTATGAGCATAATATG
Found at i:26843262 original size:25 final size:25
Alignment explanation
Indices: 26843226--26843278 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
26843216 AGTGGAGGGC
*
26843226 AAAATAAATTATTACTCCCTATAAA
1 AAAATAAATTATTACTCCCCATAAA
*
26843251 AAAATAAGTTATTACTCCCCATAAA
1 AAAATAAATTATTACTCCCCATAAA
26843276 AAA
1 AAA
26843279 TGATACATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.53, C:0.17, G:0.02, T:0.28
Consensus pattern (25 bp):
AAAATAAATTATTACTCCCCATAAA
Found at i:26847347 original size:25 final size:26
Alignment explanation
Indices: 26847311--26847362 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
26847301 TTAACTACTC
* *
26847311 TTAATAAAAAAATCAAA-GAAAACAA
1 TTAATAAAAAAATAAAATAAAAACAA
26847336 TTAA-AAATAAAATAAAATAAAAACAA
1 TTAATAAA-AAAATAAAATAAAAACAA
26847362 T
1 T
26847363 AACAATGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.13
25 12 0.52
26 8 0.35
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (26 bp):
TTAATAAAAAAATAAAATAAAAACAA
Found at i:26850212 original size:23 final size:23
Alignment explanation
Indices: 26850167--26850212 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26850157 CACACGACCG
* *
26850167 TGTCACACGAACGTTTGCTAGGC
1 TGTCACACGAACGTGTGCCAGGC
**
26850190 TGTCACACGCCCGTGTGCCAGGC
1 TGTCACACGAACGTGTGCCAGGC
26850213 CGTGTAACAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.17, C:0.33, G:0.28, T:0.22
Consensus pattern (23 bp):
TGTCACACGAACGTGTGCCAGGC
Found at i:26850767 original size:22 final size:24
Alignment explanation
Indices: 26850724--26850767 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
26850714 TTATACATAC
*
26850724 TAAATCATCTATTAAAATTTCAAG
1 TAAATCATCTATTAAAAGTTCAAG
*
26850748 TAAA-CATC-ATTATAAGTTCA
1 TAAATCATCTATTAAAAGTTCA
26850768 CATATACATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 4 0.22
24 4 0.22
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (24 bp):
TAAATCATCTATTAAAAGTTCAAG
Found at i:26857651 original size:17 final size:17
Alignment explanation
Indices: 26857629--26857673 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
26857619 GAGTGAGATG
26857629 AAGTGAAAAAGATCA-AA
1 AAGTGAAAAAG-TCACAA
*
26857646 AAGTGACAAAGTCACAA
1 AAGTGAAAAAGTCACAA
26857663 AAGTAGAAAAA
1 AAGT-GAAAAA
26857674 CTCAGTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 16 0.67
18 5 0.21
ACGTcount: A:0.62, C:0.09, G:0.18, T:0.11
Consensus pattern (17 bp):
AAGTGAAAAAGTCACAA
Found at i:26866856 original size:137 final size:136
Alignment explanation
Indices: 26866606--26866877 Score: 361
Period size: 137 Copynumber: 2.0 Consensus size: 136
26866596 ACTCGAGCCA
*
26866606 TAAATGGGTCTGCTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
1 TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
* *
26866671 GAAGAGTATCCACAACAAATGTCAAAACTCAGCCATCGATAGGACATTCAGGACCAGCACCTTGA
66 GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATCGATAGGACATTCAGGACCAGCACCTAGA
26866736 ACATGG
131 ACATGG
* * **
26866742 TAAACTGGGTCTACTCACACAAGCTGACGGTC-AGAATGTAAGCTACGC-ATGCTGCTCACACAA
1 TAAA-TGGGTCTACTCACACAAGCTGACAGTCGA-AATGT-AGCTACACGATGCCACTCACACAA
* * ** ** *
26866805 GTTGACGAGTATCTGCAACAAATGCCTGACCTCAGCCATC-AGTAGGACATTCAGGACCAGCACC
63 CTTGAAGAGTATCCACAACAAATGCCAAAACTCAGCCATCGA-TAGGACATTCAGGACCAGCACC
26866869 TAGAACATG
127 TAGAACATG
26866878 AAAACCCTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
136 6 0.05
137 105 0.89
138 7 0.06
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.19
Consensus pattern (136 bp):
TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATCGATAGGACATTCAGGACCAGCACCTAGA
ACATGG
Found at i:26874500 original size:42 final size:42
Alignment explanation
Indices: 26874444--26874540 Score: 167
Period size: 42 Copynumber: 2.3 Consensus size: 42
26874434 CTATATGAAC
26874444 GGCACTAAGTGTGCGAAACTAAAATCACGATGTTGAATAATG
1 GGCACTAAGTGTGCGAAACTAAAATCACGATGTTGAATAATG
* * *
26874486 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAATG
1 GGCACTAAGTGTGCGAAACTAAAATCACGATGTTGAATAATG
26874528 GGCACTAAGTGTG
1 GGCACTAAGTGTG
26874541 TGATACCGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACTAAAATCACGATGTTGAATAATG
Found at i:26880153 original size:23 final size:23
Alignment explanation
Indices: 26880119--26880176 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
26880109 CTTTTGTGAT
*
26880119 GGGTTCGTAAGACATGGCAAAAG
1 GGGTTCGCAAGACATGGCAAAAG
26880142 GGGTTCGCAAGACATGGCAAAAG
1 GGGTTCGCAAGACATGGCAAAAG
*
26880165 GGGTTCACAAGA
1 GGGTTCGCAAGA
26880177 TGTGAATTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.34, T:0.16
Consensus pattern (23 bp):
GGGTTCGCAAGACATGGCAAAAG
Found at i:26888973 original size:100 final size:100
Alignment explanation
Indices: 26888800--26888999 Score: 328
Period size: 100 Copynumber: 2.0 Consensus size: 100
26888790 AAAGAAAGTG
* * *
26888800 TGCCTGTATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTACTAAGTCAAT
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAC
*
26888865 TTTAAAGACTTAAACCTTCGTACATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
* *
26888900 TGCCTATATCATATTAAATTCTTATTCCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAC
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAC
**
26888965 TTTAAAGACTTAAACCTTCATGTATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
26889000 AAAGAAAATG
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (100 bp):
TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAC
TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
Found at i:26900467 original size:23 final size:23
Alignment explanation
Indices: 26900441--26900491 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26900431 ACCTACTTTC
* *
26900441 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
26900464 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26900487 TTACA
1 TTACA
26900492 TTTCTCTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26902118 original size:50 final size:50
Alignment explanation
Indices: 26902038--26902270 Score: 313
Period size: 50 Copynumber: 4.7 Consensus size: 50
26902028 CAATGTCATA
* * ** * *
26902038 TCCCAGATATAGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* ** **
26902088 TCCTAGACATGGTCTTACGGGGGACCTCTCATCCCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* ** * *
26902138 TCCCAAACATGGTCTTACATAAGACCTCTCATTTCGGTGCGAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
*
26902188 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
26902238 TCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATA
26902271 ATCTCAATGA
Statistics
Matches: 157, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 157 1.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:26904624 original size:12 final size:12
Alignment explanation
Indices: 26904607--26904650 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
26904597 ATCTTGATGT
26904607 TCTTATATAAGA
1 TCTTATATAAGA
26904619 TCTTATATAAGA
1 TCTTATATAAGA
*
26904631 ----ACATAAGA
1 TCTTATATAAGA
26904639 TCTTATATAAGA
1 TCTTATATAAGA
26904651 AAACTCTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
8 7 0.27
12 19 0.73
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (12 bp):
TCTTATATAAGA
Found at i:26904638 original size:20 final size:20
Alignment explanation
Indices: 26904613--26904651 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26904603 ATGTTCTTAT
26904613 ATAAGATCTTATATAAGAAC
1 ATAAGATCTTATATAAGAAC
26904633 ATAAGATCTTATATAAGAA
1 ATAAGATCTTATATAAGAA
26904652 AACTCTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAAGATCTTATATAAGAAC
Found at i:26904716 original size:117 final size:118
Alignment explanation
Indices: 26904504--26904728 Score: 407
Period size: 117 Copynumber: 1.9 Consensus size: 118
26904494 TATTCACTAA
*
26904504 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACATTTTCA
26904569 ATAATATAAAACTTAAAAATATATTGAAATCTTGATGTTCTTATATAAGATCT
66 ATAATATAAAACTTAAAAATATATTGAAATCTTGATGTTCTTATATAAGATCT
*
26904622 TATAT-AAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTTCTTACATTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACATTTTCA
* *
26904686 ATAATATCAAACTTAAAATTATATTGAAATCTTGATGTTCTTA
66 ATAATATAAAACTTAAAAATATATTGAAATCTTGATGTTCTTA
26904729 CCTTGTGCTA
Statistics
Matches: 103, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
117 98 0.95
118 5 0.05
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (118 bp):
TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACATTTTCA
ATAATATAAAACTTAAAAATATATTGAAATCTTGATGTTCTTATATAAGATCT
Found at i:26905541 original size:23 final size:23
Alignment explanation
Indices: 26905515--26905564 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
26905505 ACCTACTTTC
*
26905515 TTACGGTAGTAATTTTCGGGGTA
1 TTACGGTAGTAATTTTCGGGATA
*
26905538 TTACTGTAGTAATTTTCGGGATA
1 TTACGGTAGTAATTTTCGGGATA
26905561 TTAC
1 TTAC
26905565 ACAAACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.42
Consensus pattern (23 bp):
TTACGGTAGTAATTTTCGGGATA
Found at i:26906840 original size:43 final size:42
Alignment explanation
Indices: 26906718--26906841 Score: 126
Period size: 43 Copynumber: 3.0 Consensus size: 42
26906708 TAACGCATAT
* * * * *
26906718 CGATGCCACTATCCTAGACATGGTCTTATACGAATCATA-TA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAATCACACTA
* ** *
26906759 CGATGCCAATGTCCCA-ACATGGTCTTACATGTTTTCACACTT
1 CGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACACTA
*
26906801 CGATGTCAATGTCCCAGACATGGTCTTACACGAAATCACAC
1 CGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAC
26906842 CTCGGAAGTC
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
40 13 0.20
41 17 0.26
42 16 0.24
43 20 0.30
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAATCACACTA
Found at i:26907101 original size:31 final size:31
Alignment explanation
Indices: 26906955--26907089 Score: 182
Period size: 31 Copynumber: 4.4 Consensus size: 31
26906945 ACCCAATGCT
** * *
26906955 CAAATC-AATTCAACAATATATATCCATGTA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* * *
26906985 CGAATCAAATTCGGTAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
26907016 CAAATCAAATTCGGCAATGAATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
26907047 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
26907078 CAAATCAAATTC
1 CAAATCAAATTC
26907090 AACAATCTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.05
31 86 0.95
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCCATATA
Found at i:26909571 original size:40 final size:40
Alignment explanation
Indices: 26909516--26909775 Score: 254
Period size: 40 Copynumber: 6.5 Consensus size: 40
26909506 GGGTCCTAAC
* * *
26909516 TGCACATACGCT-CCCCTATTTGTACTTTAACACCCCTGAT
1 TGCACATACG-TGCCCCTGTTTGTACTTTGATACCCCTGAT
* * * * *
26909556 TGCACATACGTTCCCCTATTTGTACTTCGATACCCGTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
*
26909596 TGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGAT
1 TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
** * *
26909636 TGCACATTTGTGCCTCTGTTTGTACTTTGGTACCCCTGAT
1 TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
* * * * * *
26909676 TACACATTCGTGCCCCTGTTTATACTTCGGTACCCCTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
* * * * * * *
26909716 TGCACATGCATGCCCCTATTTATACTTCGATACCCTTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
*
26909756 TGCACTTACGTG-CCCTGTTT
1 TGCACATACGTGCCCCTGTTT
26909776 AGACTCTGGT
Statistics
Matches: 189, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
39 8 0.04
40 181 0.96
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (40 bp):
TGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAT
Found at i:26909621 original size:80 final size:80
Alignment explanation
Indices: 26909434--26909775 Score: 291
Period size: 80 Copynumber: 4.3 Consensus size: 80
26909424 AATTATTGTA
* * * * * * * * * **
26909434 TGAATGCACATGCATACCCCTGTTTGTACTTCGGCACCCTTGATTACACATACCTGCCTCGGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTATTT
* *
26909499 GCACTTCGGGT---CC
66 GTACTTC-GATACCCC
* *** *
26909512 T-AACTGCACATACGCT-CCCCTATTTGTACTTTAACACCCCTGATTGCACATACGTTCCCCTAT
1 TGAA-TGCACATACG-TGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTAT
*
26909575 TTGTACTTCGATACCCG
64 TTGTACTTCGATACCCC
** * *
26909592 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATTTGTGCCTCTGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTATTT
* *
26909657 GTACTTTGGTACCCC
66 GTACTTCGATACCCC
* * * * * * * *
26909672 TGATTACACATTCGTGCCCCTGTTTATACTTCGGTACCCCTGAATGCACATGCATGCCCCTATTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTATTT
* *
26909737 ATACTTCGATACCCT
66 GTACTTCGATACCCC
*
26909752 TGAATGCACTTACGTG-CCCTGTTT
1 TGAATGCACATACGTGCCCCTGTTT
26909776 AGACTCTGGT
Statistics
Matches: 210, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
77 4 0.02
78 53 0.25
79 10 0.05
80 141 0.67
81 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTATTT
GTACTTCGATACCCC
Found at i:26909633 original size:20 final size:20
Alignment explanation
Indices: 26909608--26909713 Score: 88
Period size: 20 Copynumber: 5.3 Consensus size: 20
26909598 CACATACGTG
26909608 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * *
26909628 CCCCTGATTGCACATTT-GTG
1 CCCCTGTTTGTAC-TTTGGTA
*
26909648 CCTCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* ** * * *
26909668 CCCCTGATTACACATTCGTG
1 CCCCTGTTTGTACTTTGGTA
* *
26909688 CCCCTGTTTATACTTCGGTA
1 CCCCTGTTTGTACTTTGGTA
26909708 CCCCTG
1 CCCCTG
26909714 AATGCACATG
Statistics
Matches: 64, Mismatches: 20, Indels: 4
0.73 0.23 0.05
Matches are distributed among these distances:
19 3 0.05
20 58 0.91
21 3 0.05
ACGTcount: A:0.13, C:0.30, G:0.18, T:0.39
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:26909769 original size:120 final size:119
Alignment explanation
Indices: 26909529--26909775 Score: 289
Period size: 120 Copynumber: 2.1 Consensus size: 119
26909519 ACATACGCTC
* *** * * * *
26909529 CCCTATTTGTACTTTAACACCCCTGATTGCACATACGTTCCCCTATTTGTACTTCGATACCCGTG
1 CCCTGTTTGTACTTTGGTACCCCTGATTACACATACGTGCCCCTATTTATACTTCGATACCCCTG
* * * * * * *
26909594 AATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATTTGTG
66 AATGCACATACATGCCCCTATTTATACTTCGATACCCCTGAATGCACATTCGTG
* * *
26909648 CCTCTGTTTGTACTTTGGTACCCCTGATTACACATTCGTGCCCCTGTTTATACTTCGGTACCCCT
1 CC-CTGTTTGTACTTTGGTACCCCTGATTACACATACGTGCCCCTATTTATACTTCGATACCCCT
* *
26909713 GAATGCACATGCATGCCCCTATTTATACTTCGATACCCTTGAATGCAC-TTACGTG
65 GAATGCACATACATGCCCCTATTTATACTTCGATACCCCTGAATGCACATT-CGTG
26909768 CCCTGTTT
1 CCCTGTTT
26909776 AGACTCTGGT
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
119 10 0.09
120 96 0.91
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.36
Consensus pattern (119 bp):
CCCTGTTTGTACTTTGGTACCCCTGATTACACATACGTGCCCCTATTTATACTTCGATACCCCTG
AATGCACATACATGCCCCTATTTATACTTCGATACCCCTGAATGCACATTCGTG
Found at i:26925521 original size:30 final size:29
Alignment explanation
Indices: 26925485--26925808 Score: 204
Period size: 30 Copynumber: 10.9 Consensus size: 29
26925475 ATAGCATTGG
*
26925485 CTATCGAATTATGAAAAGGGATGGTGACGA
1 CTATCGAATTATGAAAAGGGATGGT-TCGA
* * * *
26925515 CCATCGAATTATTAACAGAGATGGCTTC-A
1 CTATCGAATTATGAAAAGGGATGG-TTCGA
*
26925544 GCTGTCGAATTATGAAAAGGGATGGCTTC-A
1 -CTATCGAATTATGAAAAGGGATGG-TTCGA
* * * *
26925574 GTTATCAAATTATGAAAAGGGACGGCTTCGG
1 -CTATCGAATTATGAAAAGGGATGG-TTCGA
* * * *
26925605 CTATCAAATTATGAAAATGGATAGCTTCGG
1 CTATCGAATTATGAAAAGGGAT-GGTTCGA
* *
26925635 CTATCAAATTATGAAAAGGGATGGTGACGA
1 CTATCGAATTATGAAAAGGGATGGT-TCGA
* ** *
26925665 CCATC-AACAATGAAAAGGGATGGTGACGA
1 CTATCGAATTATGAAAAGGGATGGT-TCGA
* *
26925694 CCATCGAATTATGAAAAGGGATGGCTTCGG
1 CTATCGAATTATGAAAAGGGATGG-TTCGA
* * * * *
26925724 CTATCAAAATATGGAAAGGGATAGCTTCGG
1 CTATCGAATTATGAAAAGGGAT-GGTTCGA
* * * * *
26925754 CTATCAAAATATGGAAAGGGATAGCTTCGG
1 CTATCGAATTATGAAAAGGGAT-GGTTCGA
* * *
26925784 CTATTGAAATATGAAAAGGGGTGGT
1 CTATCGAATTATGAAAAGGGATGGT
26925809 AACAACATCG
Statistics
Matches: 246, Mismatches: 40, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
29 32 0.13
30 210 0.85
31 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
CTATCGAATTATGAAAAGGGATGGTTCGA
Found at i:26925615 original size:90 final size:90
Alignment explanation
Indices: 26925446--26925774 Score: 278
Period size: 90 Copynumber: 3.7 Consensus size: 90
26925436 ATGAAAAGTT
* * * * * *
26925446 TGGCTTCAGCTATCAAAATATGGAAAGGGATAGCATTGGCTATCGAATTATGAAAAGGGATGGTG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCATTAGCTATCAAATTATGAAAAGGGACGGTG
* * *
26925511 ACGACCATCGAATTATTAACA-GAGA
66 ACGACCATCAAATTATGAAAATG-GA
* * *
26925536 TGGCTTCAGCTGTCGAATTATGAAAAGGGATGGC-TTCAGTTATCAAATTATGAAAAGGGACGGC
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCATT-AGCTATCAAATTATGAAAAGGGACGG-
* * *
26925600 T-TCGGCTATCAAATTATGAAAATGGA
64 TGACGACCATCAAATTATGAAAATGGA
* * * * *
26925626 TAGCTTCGGCTATCAAATTATGAAAAGGGATGG--TGACGACCATCAACA--ATGAAAAGGGATG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCATTA-G-CTATCAA-ATTATGAAAAGGGACG
* *
26925687 GTGACGACCATCGAATTATGAAAAGGGA
63 GTGACGACCATCAAATTATGAAAATGGA
* * * * * * *
26925715 TGGCTTCGGCTATCAAAATATGGAAAGGGATAGC-TTCGGCTATCAAAATATGGAAAGGGA
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCATT-AGCTATCAAATTATGAAAAGGGA
26925775 TAGCTTCGGC
Statistics
Matches: 192, Mismatches: 36, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
88 3 0.02
89 72 0.38
90 114 0.59
91 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (90 bp):
TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCATTAGCTATCAAATTATGAAAAGGGACGGTG
ACGACCATCAAATTATGAAAATGGA
Found at i:26925681 original size:29 final size:30
Alignment explanation
Indices: 26925645--26925717 Score: 121
Period size: 29 Copynumber: 2.5 Consensus size: 30
26925635 CTATCAAATT
26925645 ATGAAAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCGAACA
**
26925674 ATGAAAAGGGATGGTGACGACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCGAACA
26925704 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
26925718 CTTCGGCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 25 0.61
30 16 0.39
ACGTcount: A:0.40, C:0.12, G:0.32, T:0.16
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAACA
Found at i:26927713 original size:42 final size:42
Alignment explanation
Indices: 26927581--26927773 Score: 223
Period size: 41 Copynumber: 4.7 Consensus size: 42
26927571 ACCCAAGTGT
* * *
26927581 AAACAGGGGCACATATGTGCAATTCAGGGG-AACTAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCTGAAGTAC
* * *
26927622 AAA-ATGGGAACATATGTGCAATTCAGGGGTATC-GAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCTGAAGTAC
* * *
26927662 AAATAGGGGCACGTTTGTGCAATTCAGGGGTTTCTGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCTGAAGTAC
* *
26927704 AAACAGGGGCATGTATGTGCAGTTCAGGGGTAT-TGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCTGAAGTAC
* * * *
26927745 AAACACGGGCATGTATGTGGAATTTAGGG
1 AAACAGGGGCACGTATGTGCAATTCAGGG
26927774 AATAATTGAG
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
40 33 0.25
41 63 0.48
42 35 0.27
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.23
Consensus pattern (42 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTATCTGAAGTAC
Found at i:26927755 original size:83 final size:81
Alignment explanation
Indices: 26927581--26927773 Score: 224
Period size: 83 Copynumber: 2.4 Consensus size: 81
26927571 ACCCAAGTGT
* *
26927581 AAACAGGGGCACATATGTGCAATTCAGGGGAACTAAAGTACAAAATGGGAACATATGTGCAATTC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGAACTAAAGTACAAAAGGGGAACATATGTGCAATTC
26927646 AGGGGTATCGAAGTAC
66 AGGGGTATCGAAGTAC
* * ** * * ** *
26927662 AAATAGGGGCACGTTTGTGCAATTCAGGGGTTTCTGAAGTACAAACAGGGGCATGTATGTGCAGT
1 AAACAGGGGCACGTATGTGCAATTCAGGGG-AACTAAAGTACAAA-AGGGGAACATATGTGCAAT
*
26927727 TCAGGGGTATTGAAGTAC
64 TCAGGGGTATCGAAGTAC
* * * *
26927745 AAACACGGGCATGTATGTGGAATTTAGGG
1 AAACAGGGGCACGTATGTGCAATTCAGGG
26927774 AATAATTGAG
Statistics
Matches: 92, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 27 0.29
82 11 0.12
83 54 0.59
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.23
Consensus pattern (81 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGAACTAAAGTACAAAAGGGGAACATATGTGCAATTC
AGGGGTATCGAAGTAC
Found at i:26929355 original size:105 final size:105
Alignment explanation
Indices: 26929172--26929383 Score: 345
Period size: 105 Copynumber: 2.0 Consensus size: 105
26929162 GGCTCACACT
** *
26929172 ATCCGTCTAAACTTGTTGTTTTTGTATCTCTTAGGGTAGTGGCGTGTATATATATTTATATAGAT
1 ATCCGTCTAAACTTGTTGTTTTTGTATCTCTTAAAGTAGTGGCATGTATATATATTTATATAGAT
* * *
26929237 GAATTTGTGGTTGAAATTCTTAGGATGTTATGTAATGGTG
66 GAATTTGTAGTTGAAATGCTTAGCATGTTATGTAATGGTG
26929277 ATCCGTCTAAA-TTGGTTGTTTTTGTATCTCTTAAAGTAGTGGCATGTATATATATTTATATAGA
1 ATCCGTCTAAACTT-GTTGTTTTTGTATCTCTTAAAGTAGTGGCATGTATATATATTTATATAGA
*
26929341 TGAATTTGTAGTTGAAATGGTTAGCATGTTATGTAATGGTG
65 TGAATTTGTAGTTGAAATGCTTAGCATGTTATGTAATGGTG
26929382 AT
1 AT
26929384 TTGGATGTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
104 2 0.02
105 97 0.98
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (105 bp):
ATCCGTCTAAACTTGTTGTTTTTGTATCTCTTAAAGTAGTGGCATGTATATATATTTATATAGAT
GAATTTGTAGTTGAAATGCTTAGCATGTTATGTAATGGTG
Found at i:26935492 original size:50 final size:53
Alignment explanation
Indices: 26935389--26935557 Score: 179
Period size: 50 Copynumber: 3.2 Consensus size: 53
26935379 AAAGAGATCT
*
26935389 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATAGCATTGGCATCA-T-AGA-TATGAGAGGTCC
* *
26935445 CATGTAATACCATGTCTGGGACATAGCGTTGGCATCA-A-A-ATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATAGCATTGGCATCATAGATATGAGAGGTCC
* * * * * **
26935495 CCTGTAAGACCATGTTTGGGACATGGCATGGGCA-C--CGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATAGCATTGGCATCATAGATATGAGAGGTCC
26935545 CATGTAAGACCAT
1 CATGTAAGACCAT
26935558 ATTTTGGATA
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
49 2 0.02
50 60 0.61
52 1 0.01
53 1 0.01
56 34 0.35
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (53 bp):
CATGTAAGACCATGTCTGGGACATAGCATTGGCATCATAGATATGAGAGGTCC
Found at i:26935620 original size:49 final size:50
Alignment explanation
Indices: 26935492--26935620 Score: 129
Period size: 50 Copynumber: 2.6 Consensus size: 50
26935482 AAATGAGAGG
* * * * *
26935492 TCCCCTGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATATTTAGGACATGGCATGGGAACCGATATGAAAAC
* * * *
26935542 TCCCATGTAAGACCATATTTTGGATATGGCATTGGAAGC-ATA-GAAAAC
1 TCCCATGTAAGACCATATTTAGGACATGGCATGGGAACCGATATGAAAAC
*
26935590 ATCCCATTTAAGACCAT-TTCTAGGACATGGC
1 -TCCCATGTAAGACCATATT-TAGGACATGGC
26935621 TTGTAACACC
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
48 7 0.11
49 27 0.41
50 32 0.48
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
TCCCATGTAAGACCATATTTAGGACATGGCATGGGAACCGATATGAAAAC
Found at i:26937502 original size:25 final size:25
Alignment explanation
Indices: 26937474--26937553 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
26937464 TTCGGGACTT
26937474 ATCACATTTATACACTTCCACATTC
1 ATCACATTTATACACTTCCACATTC
*** ** *
26937499 ATCACA-TTGGCCA-TTCGGCCTT-
1 ATCACATTTATACACTTCCACATTC
* *
26937521 ATCACATATATACACTTTCACATTC
1 ATCACATTTATACACTTCCACATTC
26937546 ATCACATT
1 ATCACATT
26937554 GGCCATTCGG
Statistics
Matches: 37, Mismatches: 15, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 9 0.24
25 13 0.35
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (25 bp):
ATCACATTTATACACTTCCACATTC
Found at i:26937527 original size:22 final size:22
Alignment explanation
Indices: 26937499--26937620 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
26937489 TTCCACATTC
26937499 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
26937521 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
26937545 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
26937568 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
26937592 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
26937615 ATCACA
1 ATCACA
26937621 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:26937534 original size:47 final size:47
Alignment explanation
Indices: 26937471--26937922 Score: 696
Period size: 47 Copynumber: 9.6 Consensus size: 47
26937461 CCCTTCGGGA
* *
26937471 CTTATCACATTTATACACTTCCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26937518 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26937565 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26937612 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26937659 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26937706 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
26937753 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26937802 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26937849 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26937896 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26937923 TATTCAAATA
Statistics
Matches: 381, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 336 0.88
49 43 0.11
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:26939437 original size:56 final size:56
Alignment explanation
Indices: 26939370--26939489 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26939360 TATTAGTTTA
26939370 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
26939426 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26939482 TTGCCCAT
1 TTGCCCAT
26939490 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26940802 original size:40 final size:40
Alignment explanation
Indices: 26940757--26941073 Score: 445
Period size: 40 Copynumber: 7.9 Consensus size: 40
26940747 CGAATACACG
* * * * *
26940757 TCACCAGCATGATTGCTCTTCAGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
26940797 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
26940837 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
26940877 TCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26940917 TCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26940957 TCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26940997 TCACTAGCATGAATGCTCTTCGGGACTTAACCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26941037 TCACTAGCATGAATGCTCTTCGGGACTTAACCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
26941074 TTAGTAACTC
Statistics
Matches: 253, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 253 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26941098 original size:40 final size:41
Alignment explanation
Indices: 26940770--26941191 Score: 350
Period size: 40 Copynumber: 10.6 Consensus size: 41
26940760 CCAGCATGAT
* * * * *
26940770 TGCTCTTCAGGACCTAGCCCGGATATA-ACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
** * *
26940810 TGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* * * **
26940850 TGCTCTTCGGAACTTAGCCCGAATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
** * ***
26940890 TGCTCTTCGAAACTTAGCCCGGATACA-TCACTAGCGTGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* ***
26940930 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCGTGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* **
26940970 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* * **
26941010 TGCTCTTCGGGACTTAACCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* * * *
26941050 TGCTCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* * *
26941091 TGC-CTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACCAA
* *
26941130 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACCAA
*
26941170 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26941192 CATCATTCGA
Statistics
Matches: 338, Mismatches: 37, Indels: 14
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.09
40 284 0.84
41 20 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
Found at i:26941098 original size:80 final size:80
Alignment explanation
Indices: 26940770--26941111 Score: 436
Period size: 80 Copynumber: 4.3 Consensus size: 80
26940760 CCAGCATGAT
* * * * * * ** *
26940770 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
*
26940835 TATCACTAGCACGAA
66 CATCACTAGCACGAA
* * **
26940850 TGCTCTTCGGAACTTAGCCCGAATACATCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
**
26940915 CATCACTAGCGTGAA
66 CATCACTAGCACGAA
*
26940930 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
*
26940995 CATCACTAGCATGAA
66 CATCACTAGCACGAA
* * *
26941010 TGCTCTTCGGGACTTAACCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAACCCGGATT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
* * * *
26941075 TAGTAACTCGCACCAA
66 CA-TCACTAGCACGAA
26941091 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26941112 ATTAGTAACT
Statistics
Matches: 229, Mismatches: 32, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
79 10 0.04
80 207 0.90
81 12 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:26941098 original size:120 final size:120
Alignment explanation
Indices: 26940757--26941111 Score: 462
Period size: 120 Copynumber: 3.0 Consensus size: 120
26940747 CGAATACACG
* * * * * * * * *
26940757 TCACCAGCATGATTGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * * *
26940822 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATACA
66 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
** *
26940877 TCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATACATCACTAGCGTGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* **
26940942 CTTAGCCCGGATACATCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATACA
66 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26940997 TCACTAGCATGAATGCTCTTCGGGACTTAACCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * * * *
26941062 CTTAACCCGGATTTAGTAACTCGCACCAATGC-CTTCGGG-CTTAGCCCGGA
66 CTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGA
26941112 ATTAGTAACT
Statistics
Matches: 203, Mismatches: 31, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
119 11 0.05
120 181 0.89
121 11 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26942720 original size:43 final size:41
Alignment explanation
Indices: 26942657--26942776 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 41
26942647 AGCTTGTACA
* * * *
26942657 ATGCCATATCCCAGATATGGTCTTACATGTCAATAC-ATTTCG
1 ATGCCATGTCCCAGACATGGTCTTACACGT-AAT-CTACTTCG
*
26942699 ATGCCACTGTCCCAGACATGGTCTTACACGTTATCTTACTTCG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGTAATC-TACTTCG
* *
26942742 ATGCCAATGTCTCAGACATGGTCTTACACGAAATC
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATC
26942777 ACATCTCAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.02
42 8 0.12
43 56 0.85
44 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (41 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAATCTACTTCG
Found at i:26955087 original size:22 final size:22
Alignment explanation
Indices: 26955030--26955094 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
26955020 CTCCGATTAT
* *
26955030 TAGCACATTAGTGCTCTCCGTT
1 TAGCACATTAGTGCTCTCTGTA
* **
26955052 TAACACATCCGTGCTCTCTGTA
1 TAGCACATTAGTGCTCTCTGTA
*
26955074 TAGCACTTTAGTGCTCTCTGT
1 TAGCACATTAGTGCTCTCTGT
26955095 TCAATAGGGC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (22 bp):
TAGCACATTAGTGCTCTCTGTA
Found at i:26957441 original size:40 final size:39
Alignment explanation
Indices: 26957382--26957618 Score: 233
Period size: 40 Copynumber: 5.9 Consensus size: 39
26957372 TGTATGAATG
*
26957382 CACATACGTGCCCCAATTTGTACTTCGATACCCCTGATGT
1 CACATACGTGCCCCTATTTGTACTTCGATACCCCTGAT-T
* * * *
26957422 CACATACGTGCTCCTATTTGTACTTTGATACCCCTAAATG
1 CACATACGTGCCCCTATTTGTACTTCGATACCCCT-GATT
* * * * ** *
26957462 CACATTCGTGCCCCTATTTGTATTTTGGTACTGCGGATT
1 CACATACGTGCCCCTATTTGTACTTCGATACCCCTGATT
* *
26957501 GCACATATGTGCCCCTATTTGTACTTCAATACCCCTGAATT
1 -CACATACGTGCCCCTATTTGTACTTCGATACCCCTG-ATT
*
26957542 CACATACGTGCCCCTTTTTGTACTTC-AGTACCCCTGATT
1 CACATACGTGCCCCTATTTGTACTTCGA-TACCCCTGATT
** ** *
26957581 GCACATTTGTGCCTATGTTTGTACTTCGATACCCCTGA
1 -CACATACGTGCCCCTATTTGTACTTCGATACCCCTGA
26957619 ATGTACTCAA
Statistics
Matches: 161, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
39 6 0.04
40 149 0.93
41 6 0.04
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (39 bp):
CACATACGTGCCCCTATTTGTACTTCGATACCCCTGATT
Found at i:26957518 original size:80 final size:80
Alignment explanation
Indices: 26957376--26957621 Score: 296
Period size: 80 Copynumber: 3.1 Consensus size: 80
26957366 AATTATTGTA
* * * *
26957376 TGAATGCACATACGTGCCCCAATTTGTACTTCGATACCCCTGA-TGTCACATACGTGCTCCTATT
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTG-CACATATGTGCCCCTATT
*
26957440 TGTACTTTGATACCCC
65 TGTACTTCGATACCCC
* * * * ** *
26957456 TAAATGCACATTCGTGCCCCTATTTGTATTTTGGTACTGCGGATTGCACATATGTGCCCCTATTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
*
26957521 GTACTTCAATACCCC
66 GTACTTCGATACCCC
* * * * ** *
26957536 TGAATTCACATACGTGCCCCTTTTTGTACTTCAGTACCCCTGATTGCACATTTGTGCCTATGTTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
26957601 GTACTTCGATACCCC
66 GTACTTCGATACCCC
26957616 TGAATG
1 TGAATG
26957622 TACTCAATAC
Statistics
Matches: 136, Mismatches: 29, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
80 134 0.99
81 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
GTACTTCGATACCCC
Found at i:26957602 original size:120 final size:120
Alignment explanation
Indices: 26957380--26957603 Score: 308
Period size: 120 Copynumber: 1.9 Consensus size: 120
26957370 ATTGTATGAA
* *
26957380 TGCACATACGTGCCCCAATTTGTACTTCGATACCCCTGATGTCACATACGTGCTCCTATTTGTAC
1 TGCACATACGTGCCCCAATTTGTACTTCAATACCCCTGATGTCACATACGTGCCCCTATTTGTAC
* *
26957445 TTTGATACCCCTAAATGCACATTCGTGCCCCTATTTGTATTTTGGTACTGCGGAT
66 TTAGATACCCCTAAATGCACATTCGTGCCCATATTTGTATTTTGGTACTGCGGAT
* * *
26957500 TGCACATATGTGCCCCTATTTGTACTTCAATACCCCTGAAT-TCACATACGTGCCCCTTTTTGTA
1 TGCACATACGTGCCCCAATTTGTACTTCAATACCCCTG-ATGTCACATACGTGCCCCTATTTGTA
* * * * *
26957564 CTTCAG-TACCCCTGATTGCACATTTGTGCCTATGTTTGTA
65 CTT-AGATACCCCTAAATGCACATTCGTGCCCATATTTGTA
26957604 CTTCGATACC
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
120 87 0.97
121 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.36
Consensus pattern (120 bp):
TGCACATACGTGCCCCAATTTGTACTTCAATACCCCTGATGTCACATACGTGCCCCTATTTGTAC
TTAGATACCCCTAAATGCACATTCGTGCCCATATTTGTATTTTGGTACTGCGGAT
Found at i:26957625 original size:20 final size:20
Alignment explanation
Indices: 26957600--26957645 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
26957590 TGCCTATGTT
*
26957600 TGTACTTCGATACCCCTGAA
1 TGTACTTCAATACCCCTGAA
26957620 TGTAC-TCAATACCCCTGAA
1 TGTACTTCAATACCCCTGAA
*
26957639 TGCACTT
1 TGTACTT
26957646 ACGTGCCCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (20 bp):
TGTACTTCAATACCCCTGAA
Found at i:26966941 original size:20 final size:20
Alignment explanation
Indices: 26966918--26966960 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
26966908 AAAAATTAAA
*
26966918 AAAAAATCAAAATAATTTTT
1 AAAAAATCAAAATAAATTTT
** *
26966938 AAAATTTTAAAATAAATTTT
1 AAAAAATCAAAATAAATTTT
26966958 AAA
1 AAA
26966961 GTTCAAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAATCAAAATAAATTTT
Found at i:26968127 original size:15 final size:15
Alignment explanation
Indices: 26968107--26968136 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26968097 ATCAATTTAA
*
26968107 TTATTTTTAAATTTT
1 TTATTTTAAAATTTT
26968122 TTATTTTAAAATTTT
1 TTATTTTAAAATTTT
26968137 AATCTAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATTTTAAAATTTT
Found at i:26969957 original size:28 final size:28
Alignment explanation
Indices: 26969917--26969970 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
26969907 TTTAGTAAAT
26969917 GTTTCACCTGTCAACATATGAAGAGCAA
1 GTTTCACCTGTCAACATATGAAGAGCAA
26969945 GTTTCACCTGTCAACATATGAAGAGC
1 GTTTCACCTGTCAACATATGAAGAGC
26969971 TTAGGGCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (28 bp):
GTTTCACCTGTCAACATATGAAGAGCAA
Found at i:26970527 original size:31 final size:31
Alignment explanation
Indices: 26970491--26970549 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
26970481 AGGCATAAGC
*
26970491 TAAATGTTGAGAACTTATTTGGGTACAATTT
1 TAAATGTTGAGAACTTATTTGAGTACAATTT
26970522 TAAATGTTGAGAACTTATTTGAGTACAA
1 TAAATGTTGAGAACTTATTTGAGTACAA
26970550 GATAAAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.39
Consensus pattern (31 bp):
TAAATGTTGAGAACTTATTTGAGTACAATTT
Found at i:26976147 original size:116 final size:121
Alignment explanation
Indices: 26976004--26976238 Score: 329
Period size: 126 Copynumber: 1.9 Consensus size: 121
26975994 TAAATATAAA
*
26976004 ATATTTTATATTAAATTAATTTAATATTTTATAATAA-ATTAT-A-TTAAAATATTTTA-TTTTA
1 ATATTTTATATCAAATTAATTTAATATTTTATAATAATATTATAATTTAAAATATTTTATTTTTA
*
26976065 TATTATT-TGAAATTTGGAAATAATATTTTATATTAAATTATATTAAAATATTTAAC
66 TATT-TTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAATATTTAAC
* *
26976121 ATATTTTATA-CAAATTAATTTTATATTTTATATTAAGTTATTATAAAAGATTTAAAATATTTTA
1 ATATTTTATATCAAATTAATTTAATATTTTATAATAA--TATTAT---A-ATTTAAAATATTTTA
26976185 TTTTTATATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAA
60 TTTTTATATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAA
26976239 GTTTTTTTTA
Statistics
Matches: 103, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
116 23 0.22
117 10 0.10
119 5 0.05
124 1 0.01
125 15 0.15
126 49 0.48
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (121 bp):
ATATTTTATATCAAATTAATTTAATATTTTATAATAATATTATAATTTAAAATATTTTATTTTTA
TATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAATATTTAAC
Found at i:26983418 original size:11 final size:11
Alignment explanation
Indices: 26983398--26983431 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
26983388 GCATCCAAAT
26983398 CAAG-CATAAA
1 CAAGCCATAAA
26983408 CAAGCCATAAA
1 CAAGCCATAAA
26983419 CAAGCCATAAA
1 CAAGCCATAAA
26983430 CA
1 CA
26983432 TATGGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.56, C:0.26, G:0.09, T:0.09
Consensus pattern (11 bp):
CAAGCCATAAA
Found at i:26986269 original size:19 final size:18
Alignment explanation
Indices: 26986233--26986272 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26986223 TTTCCACTCG
*
26986233 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
26986251 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
26986270 TTT
1 TTT
26986273 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:26987350 original size:14 final size:14
Alignment explanation
Indices: 26987331--26987368 Score: 69
Period size: 13 Copynumber: 2.8 Consensus size: 14
26987321 AAAACTAGCT
26987331 TTTTTTTTTCACGA
1 TTTTTTTTTCACGA
26987345 -TTTTTTTTCACGA
1 TTTTTTTTTCACGA
26987358 TTTTTTTTTCA
1 TTTTTTTTTCA
26987369 ACTTGATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.13, C:0.13, G:0.05, T:0.68
Consensus pattern (14 bp):
TTTTTTTTTCACGA
Found at i:26987424 original size:13 final size:13
Alignment explanation
Indices: 26987406--26987452 Score: 76
Period size: 13 Copynumber: 3.5 Consensus size: 13
26987396 ATGGAAACTA
26987406 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
26987419 TTTTTTTTTGAATT
1 TTTTTTTTTGAA-T
26987433 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
*
26987446 ATTTTTT
1 TTTTTTT
26987453 CGAAGATGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 19 0.59
14 13 0.41
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:26987425 original size:14 final size:14
Alignment explanation
Indices: 26987406--26987452 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
26987396 ATGGAAACTA
26987406 TTTTTTTTTGAA-T
1 TTTTTTTTTGAATT
26987419 TTTTTTTTTGAATT
1 TTTTTTTTTGAATT
26987433 TTTTTTTTTGAATAT
1 TTTTTTTTTGAAT-T
26987448 TTTTT
1 TTTTT
26987453 CGAAGATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.38
14 14 0.44
15 6 0.19
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTTTTTTTGAATT
Found at i:27008209 original size:38 final size:38
Alignment explanation
Indices: 27008071--27008266 Score: 131
Period size: 38 Copynumber: 5.0 Consensus size: 38
27008061 ACAATGAATT
* * * * *
27008071 GACACAAAGACTACTAGGCTCAAAGCCTGATATAACACATC
1 GACACAAAGCCTGCTAGGCACAAAGCCCGA-ATATCAC--C
* * * **
27008112 GGCACGAAGCCTGCTAAGCACAAAGCTTGATATAATACACC
1 GACACAAAGCCTGCTAGGCACAAAGCCCGA-AT-AT-CACC
* * * * ** *
27008153 AAAAAAAAGCCTGGTAGGCACAAAGCATGAATATCACT
1 GACACAAAGCCTGCTAGGCACAAAGCCCGAATATCACC
* * **
27008191 GGCACAAAGCCTACTAGGCACGGAGCCCGAATATCACC
1 GACACAAAGCCTGCTAGGCACAAAGCCCGAATATCACC
**
27008229 GACACAAAGCCTGCTAAACACAAAGCCCGAATATCACC
1 GACACAAAGCCTGCTAGGCACAAAGCCCGAATATCACC
27008267 ACGTTTCTAT
Statistics
Matches: 119, Mismatches: 34, Indels: 7
0.74 0.21 0.04
Matches are distributed among these distances:
38 62 0.52
39 2 0.02
40 2 0.02
41 49 0.41
42 1 0.01
43 3 0.03
ACGTcount: A:0.40, C:0.28, G:0.18, T:0.14
Consensus pattern (38 bp):
GACACAAAGCCTGCTAGGCACAAAGCCCGAATATCACC
Found at i:27009736 original size:13 final size:13
Alignment explanation
Indices: 27009718--27009743 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27009708 AGATATAGGG
27009718 TTTTTGCATGATT
1 TTTTTGCATGATT
27009731 TTTTTGCATGATT
1 TTTTTGCATGATT
27009744 CTTGATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (13 bp):
TTTTTGCATGATT
Found at i:27010271 original size:40 final size:41
Alignment explanation
Indices: 27010210--27010325 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 41
27010200 AGAAAAATGA
* *
27010210 TGAATTGCACATATGTTCCCCTATTTGTACTTCGATACCC-
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
*
27010250 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
* * *
27010291 TGAATTACACACACGTGCCCCTGATTAG-ACTTCGA
1 TGAATTGCACATACGTGCCCCT-ATTTGTACTTCGA
27010326 AAATTCTGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 37 0.55
41 27 0.40
42 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
Found at i:27010323 original size:41 final size:40
Alignment explanation
Indices: 27010227--27010325 Score: 128
Period size: 41 Copynumber: 2.5 Consensus size: 40
27010217 CACATATGTT
* * * *
27010227 CCCCTATTTGTACTTCGATACCCTGAATTGCACATACGTG
1 CCCCTGTTAGTACTTCGATACCCTGAATTACACACACGTG
*
27010267 CCCCTGTTTGTACTTCGATACCCTTGAATTACACACACGTG
1 CCCCTGTTAGTACTTCGATACCC-TGAATTACACACACGTG
27010308 CCCCTGATTAG-ACTTCGA
1 CCCCTG-TTAGTACTTCGA
27010326 AAATTCTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 22 0.42
41 28 0.53
42 3 0.06
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.31
Consensus pattern (40 bp):
CCCCTGTTAGTACTTCGATACCCTGAATTACACACACGTG
Found at i:27019028 original size:27 final size:27
Alignment explanation
Indices: 27018992--27019150 Score: 161
Period size: 27 Copynumber: 6.1 Consensus size: 27
27018982 AGAGGTCAAT
*
27018992 AAATGACCAAAATACCCCTATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
*
27019019 AAATGACCAAAAT-------TAAGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* * *
27019039 AAATGATCGAGATACCCCCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* *
27019066 AACTGACCAAGATACCCCCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* * *
27019093 AAATGACCGAAATATCTCCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* *
27019120 AGATGACCGAAATACCCCCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
27019147 AAAT
1 AAAT
27019151 AACTATTATA
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
20 16 0.15
27 92 0.85
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATGACCAAAATACCCCCATAGGGTA
Found at i:27019340 original size:26 final size:26
Alignment explanation
Indices: 27019283--27019333 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
27019273 GAGGACGTAT
* * * *
27019283 ACTGTTACTGGCAGCTTTGTTGCGAG
1 ACTGGTACTGCCAACTTTGCTGCGAG
27019309 ACTGGTACTGCCAACTTTGCTGCGA
1 ACTGGTACTGCCAACTTTGCTGCGA
27019334 TATTGGTGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (26 bp):
ACTGGTACTGCCAACTTTGCTGCGAG
Found at i:27019482 original size:28 final size:28
Alignment explanation
Indices: 27019438--27019496 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
27019428 ATTACACTGT
*
27019438 ACTATTATTGTACTGGGCTAAGGCCCAC
1 ACTATTACTGTACTGGGCTAAGGCCCAC
*
27019466 ACTATTACTGTATTGGGCTAAGGCCCAC
1 ACTATTACTGTACTGGGCTAAGGCCCAC
27019494 ACT
1 ACT
27019497 GTATAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (28 bp):
ACTATTACTGTACTGGGCTAAGGCCCAC
Found at i:27019506 original size:33 final size:32
Alignment explanation
Indices: 27019431--27019525 Score: 92
Period size: 28 Copynumber: 3.0 Consensus size: 32
27019421 TTGCATTATT
* *
27019431 ACACTGTACTATTATTGTACTGGGCTAAGGCCC
1 ACACTGTA-TATTACTGTATTGGGCTAAGGCCC
27019464 ACAC----TATTACTGTATTGGGCTAAGGCCC
1 ACACTGTATATTACTGTATTGGGCTAAGGCCC
* *
27019492 ACACTGTATAATTACTGAATAT-GGCTCAGGCCC
1 ACACTGTAT-ATTACTGTAT-TGGGCTAAGGCCC
27019525 A
1 A
27019526 GACCATTACT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
28 26 0.50
32 1 0.02
33 24 0.46
34 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (32 bp):
ACACTGTATATTACTGTATTGGGCTAAGGCCC
Found at i:27026499 original size:50 final size:50
Alignment explanation
Indices: 27026445--27026566 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 50
27026435 CCCAAATATG
* * *
27026445 GTCTTACATGGGA-GTTCTCATATCGATGCCTATGCCATGTCCAAGACATA
1 GTCTTACATGGGACCTT-TCATATCGATGCCAACGCCATGTCCAAGACATA
** * * * *
27026495 GTCTTACGGGGGACCTTTCATCTCGGTGCCAACGCCATGTCCCAGACATG
1 GTCTTACATGGGACCTTTCATATCGATGCCAACGCCATGTCCAAGACATA
* *
27026545 GTCTTACATAGGACCTCTCATA
1 GTCTTACATGGGACCTTTCATA
27026567 ATCTCAATGA
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 55 0.96
51 2 0.04
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
GTCTTACATGGGACCTTTCATATCGATGCCAACGCCATGTCCAAGACATA
Found at i:27028382 original size:26 final size:26
Alignment explanation
Indices: 27028353--27028408 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
27028343 TCATGCGAAT
27028353 TGTGAAATGAG-TATGCTCACACGAGC
1 TGTGAAATGAGCT-TGCTCACACGAGC
* *
27028379 TGTGAAATGGGCTTGCTCACATGAGC
1 TGTGAAATGAGCTTGCTCACACGAGC
27028405 TGTG
1 TGTG
27028409 GGTCGGAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (26 bp):
TGTGAAATGAGCTTGCTCACACGAGC
Found at i:27034031 original size:18 final size:18
Alignment explanation
Indices: 27033993--27034026 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
27033983 AAAAATCCAA
27033993 AAATATTTAAAAATAAAT
1 AAATATTTAAAAATAAAT
27034011 AAAT-TTTAAAAA-AAAT
1 AAATATTTAAAAATAAAT
27034027 CTAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 8 0.50
18 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATATTTAAAAATAAAT
Found at i:27040173 original size:28 final size:27
Alignment explanation
Indices: 27040142--27040199 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
27040132 TTTAAAATTT
27040142 AATTA-ATAACTCTATTTTACATAAATAA
1 AATTACATAACTCTATTTTA-A-AAATAA
*
27040170 AATTAGCATAACTCTTTTTTAAAAATAA
1 AATTA-CATAACTCTATTTTAAAAATAA
27040198 AA
1 AA
27040200 AGTCATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 13 0.48
29 1 0.04
30 13 0.48
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (27 bp):
AATTACATAACTCTATTTTAAAAATAA
Found at i:27040270 original size:34 final size:32
Alignment explanation
Indices: 27040204--27040271 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 32
27040194 ATAAAAAGTC
*
27040204 ATTTTTATAATAATTTCAAATTTATTATAATT
1 ATTTTTATAATAATTTCAAATTAATTATAATT
*
27040236 ATTTTTAATTAATAATTTTAAATTGAATTA-AATT
1 ATTTTT-A-TAATAATTTCAAATT-AATTATAATT
27040270 AT
1 AT
27040272 AATTATCACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 6 0.19
33 1 0.03
34 20 0.65
35 4 0.13
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
ATTTTTATAATAATTTCAAATTAATTATAATT
Found at i:27041162 original size:11 final size:11
Alignment explanation
Indices: 27041146--27041170 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27041136 TACAAAGTTT
27041146 ATTATAATAAA
1 ATTATAATAAA
27041157 ATTATAATAAA
1 ATTATAATAAA
27041168 ATT
1 ATT
27041171 CATTGTGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTATAATAAA
Found at i:27041274 original size:15 final size:15
Alignment explanation
Indices: 27041254--27041283 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27041244 TTCACTGATA
*
27041254 TGTCTTTTATATTTT
1 TGTCTTTCATATTTT
27041269 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
27041284 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (15 bp):
TGTCTTTCATATTTT
Found at i:27042947 original size:20 final size:19
Alignment explanation
Indices: 27042922--27042971 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
27042912 TACTAGTATT
27042922 TGATTAATTTAATATTAAA
1 TGATTAATTTAATATTAAA
27042941 GTGATT-ATCTTAATATTAAA
1 -TGATTAAT-TTAATATTAAA
27042961 T--TTAATTTAAT
1 TGATTAATTTAAT
27042972 GTTTATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.25
18 2 0.07
19 3 0.11
20 16 0.57
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (19 bp):
TGATTAATTTAATATTAAA
Found at i:27045470 original size:29 final size:29
Alignment explanation
Indices: 27045437--27045513 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
27045427 ATAGGCGATC
27045437 ATCGAATATGAAAAGGGATAGCTTCAACT
1 ATCGAATATGAAAAGGGATAGCTTCAACT
* ***
27045466 ATCG-ATCATGAAAAGGGATAGTTTTGGCT
1 ATCGAAT-ATGAAAAGGGATAGCTTCAACT
*
27045495 ATCGATTATGAAAAGGGAT
1 ATCGAATATGAAAAGGGAT
27045514 GGTGACGACC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.05
29 38 0.93
30 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATAGCTTCAACT
Found at i:27045567 original size:30 final size:29
Alignment explanation
Indices: 27045495--27045659 Score: 222
Period size: 29 Copynumber: 5.6 Consensus size: 29
27045485 AGTTTTGGCT
27045495 ATCGATTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* *
27045524 ATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
**
27045553 ATCGATTAATGAAAAGGGATGGTTTCGACC
1 ATCGATT-ATGAAAAGGGATGGTGACGACC
* *
27045583 ATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
**
27045612 ATCGATTAATGAAAAGGGATGGTTTCGACC
1 ATCGATT-ATGAAAAGGGATGGTGACGACC
* *
27045642 ATGGAATATGAAAAGGGA
1 ATCGATTATGAAAAGGGA
27045660 CGGTTACAAC
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
29 68 0.58
30 50 0.42
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (29 bp):
ATCGATTATGAAAAGGGATGGTGACGACC
Found at i:27045595 original size:88 final size:88
Alignment explanation
Indices: 27045473--27045664 Score: 251
Period size: 88 Copynumber: 2.2 Consensus size: 88
27045463 ACTATCGATC
* * * * * *
27045473 ATGAAAAGGGATAGTTTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAGT-ATGAAA
1 ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAAA
*
27045537 AGGGATGGTGACGACCATCGATT
66 AGGGATGGTGACGACCATCGAAT
* *
27045560 AATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCGATTAATGAA
1 -ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAA
** *
27045625 AAGGGATGGTTTCGACCATGGAAT
65 AAGGGATGGTGACGACCATCGAAT
*
27045649 ATGAAAAGGGACGGTT
1 ATGAAAAGGGATGGTT
27045665 ACAACCATTG
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 65 0.72
89 25 0.28
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.23
Consensus pattern (88 bp):
ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAAA
AGGGATGGTGACGACCATCGAAT
Found at i:27045672 original size:59 final size:59
Alignment explanation
Indices: 27045495--27045659 Score: 280
Period size: 59 Copynumber: 2.8 Consensus size: 59
27045485 AGTTTTGGCT
**
27045495 ATCGATT-ATGAAAAGGGATGGTGACGACCATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
27045553 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
*
27045612 ATCGATTAATGAAAAGGGATGGTTTCGACCATGGAA-TATGAAAAGGGA
1 ATCGATTAATGAAAAGGGATGGTTTCGACCAT-CAAGTATGAAAAGGGA
27045660 CGGTTACAAC
Statistics
Matches: 102, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
58 7 0.07
59 93 0.91
60 2 0.02
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (59 bp):
ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
Found at i:27048536 original size:20 final size:19
Alignment explanation
Indices: 27048507--27048557 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
27048497 CAGAAAATGA
*
27048507 TTTCTGGAAAATTACTTAC
1 TTTCTGGAAAATGACTTAC
27048526 TTTCTTGGAAAATGACTTAC
1 TTTC-TGGAAAATGACTTAC
27048546 TTTCCTGGAAAA
1 TTT-CTGGAAAA
27048558 GTTAATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.83
21 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (19 bp):
TTTCTGGAAAATGACTTAC
Found at i:27048994 original size:14 final size:15
Alignment explanation
Indices: 27048971--27049020 Score: 59
Period size: 14 Copynumber: 3.3 Consensus size: 15
27048961 GACTTATGAC
*
27048971 ATATTTTAATAT-TT
1 ATATTATAATATATT
27048985 ATATTATAATATATT
1 ATATTATAATATATT
27049000 -TATTATTAATATATTT
1 ATATTA-TAATATA-TT
27049016 ATATT
1 ATATT
27049021 TGTAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 16 0.52
15 9 0.29
16 2 0.06
17 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTATAATATATT
Found at i:27049013 original size:17 final size:17
Alignment explanation
Indices: 27048979--27049047 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
27048969 ACATATTTTA
27048979 ATATTTA-TATT-ATAAT
1 ATATTTATTATTAAT-AT
27048995 ATATTTATTATTAATAT
1 ATATTTATTATTAATAT
*
27049012 AT-TTATATT-TGTAATAA
1 ATATT-TATTAT-TAATAT
*
27049029 ATATTTATTATTAAAAT
1 ATATTTATTATTAATAT
27049046 AT
1 AT
27049048 TAATATTGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 10 0.23
17 29 0.66
18 5 0.11
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (17 bp):
ATATTTATTATTAATAT
Found at i:27049038 original size:34 final size:32
Alignment explanation
Indices: 27048978--27049054 Score: 102
Period size: 34 Copynumber: 2.4 Consensus size: 32
27048968 GACATATTTT
27048978 AATATTTATA-TTATAATATATTTATTATTAA
1 AATATTTATATTTATAATATATTTATTATTAA
* *
27049009 TATATTTATATTTGTAATAAATATTTATTATTAA
1 AATATTTATATTTATAAT--ATATTTATTATTAA
*
27049043 AATATTAATATT
1 AATATTTATATT
27049055 GAATATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
31 9 0.23
32 6 0.15
34 24 0.62
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (32 bp):
AATATTTATATTTATAATATATTTATTATTAA
Found at i:27049054 original size:14 final size:15
Alignment explanation
Indices: 27048978--27049068 Score: 51
Period size: 15 Copynumber: 5.7 Consensus size: 15
27048968 GACATATTTT
27048978 AATATTT-ATATTATA
1 AATATTTAATATTA-A
*
27048993 ATATATTTATTATTAA
1 A-ATATTTAATATTAA
* *
27049009 TATATTTATATTTGTAATA
1 AATATTTA-ATAT-T-A-A
*
27049028 AATATTTATTATTAA
1 AATATTTAATATTAA
27049043 AATA-TTAATATTGAA
1 AATATTTAATATT-AA
* *
27049058 TATTTTTAATA
1 AATATTTAATA
27049069 ATATGTGAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
14 7 0.12
15 17 0.29
16 16 0.28
17 7 0.12
18 3 0.05
19 8 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
AATATTTAATATTAA
Found at i:27049054 original size:17 final size:16
Alignment explanation
Indices: 27048978--27049054 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 16
27048968 GACATATTTT
27048978 AATATTTATATTA-TAA
1 AATA-TTATATTATTAA
*
27048994 TATATT-TATTATTAA
1 AATATTATATTATTAA
*
27049009 TATATTTATATT-TGTAATA
1 AATA-TTATATTAT-T-A-A
27049028 AATATT-TATTATTAA
1 AATATTATATTATTAA
27049043 AATATTAATATT
1 AATATT-ATATT
27049055 GAATATTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
14 5 0.10
15 16 0.32
16 7 0.14
17 14 0.28
18 4 0.08
19 4 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (16 bp):
AATATTATATTATTAA
Found at i:27049186 original size:25 final size:23
Alignment explanation
Indices: 27049127--27049186 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 23
27049117 AAAATAAAAT
*
27049127 TAAAATATTAAATAATTTATTAA
1 TAAATTATTAAATAATTTATTAA
* *
27049150 AATAATAAATTAAATTAATTGTATTAA
1 TA-AAT-TATTAAA-TAATT-TATTAA
27049177 TAAATTATTA
1 TAAATTATTA
27049187 TGTGACTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.04
24 2 0.07
25 10 0.36
26 8 0.29
27 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAATTATTAAATAATTTATTAA
Found at i:27056782 original size:24 final size:25
Alignment explanation
Indices: 27056737--27056787 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
27056727 ATTTTTGGGA
*
27056737 AAATTAATTTTGATTAAGTAAAATT
1 AAATTAATTTAGATTAAGTAAAATT
*
27056762 AAATTAA-TTAGATTAATTAAAATT
1 AAATTAATTTAGATTAAGTAAAATT
27056786 AA
1 AA
27056788 TATGATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (25 bp):
AAATTAATTTAGATTAAGTAAAATT
Found at i:27057296 original size:13 final size:13
Alignment explanation
Indices: 27057261--27057298 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
27057251 GAGATATTTG
27057261 TAATTTGAAAACT
1 TAATTTGAAAACT
27057274 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
27057288 TAATTTGAAAA
1 TAATTTGAAAA
27057299 TTTGGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:27057580 original size:35 final size:35
Alignment explanation
Indices: 27057536--27057711 Score: 185
Period size: 35 Copynumber: 5.1 Consensus size: 35
27057526 TTCACTTGTC
* * *
27057536 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
* * * *
27057571 TTTTGTTGCAAGGAATCTCTCCTGTTCACAAATCA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
* * * * *
27057606 -TTTCTTGCAGGGAATATTTCCTCTTTACGCATTA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
* *
27057640 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
* * *
27057675 -TTTCTTGCAGGGAATCTCTCCTATTCATACATCA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
27057709 TTT
1 TTT
27057712 CTGGTATTAT
Statistics
Matches: 113, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
34 56 0.50
35 57 0.50
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (35 bp):
TTTTCTTGCAGGGAATATCTCCTGTTCACACATCA
Found at i:27057620 original size:34 final size:34
Alignment explanation
Indices: 27057537--27057713 Score: 192
Period size: 34 Copynumber: 5.1 Consensus size: 34
27057527 TCACTTGTCT
* * * *
27057537 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * *
27057571 TTTTGTTGCAAGGAATCTCTCCTGTTCACAAATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * * * * *
27057606 TTTCTTGCAGGGAATATTTCCTCTTTACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
*
27057640 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* *
27057675 TTTCTTGCAGGGAATCTCTCCTATTCATACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
27057709 TTTCT
1 TTTCT
27057714 GGTATTATTT
Statistics
Matches: 115, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
34 61 0.53
35 54 0.47
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
Found at i:27057637 original size:69 final size:69
Alignment explanation
Indices: 27057537--27057689 Score: 270
Period size: 69 Copynumber: 2.2 Consensus size: 69
27057527 TCACTTGTCT
*
27057537 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAAGGAATCTCTCCTGTTCACAA
1 TTTCTTGCAGGGAATATTTCCTCTTCACGCATTATTTTGTTGCAAGGAATCTCTCCTGTTCACAA
27057602 ATCA
66 ATCA
* * *
27057606 TTTCTTGCAGGGAATATTTCCTCTTTACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATATTTCCTCTTCACGCATTATTTTGTTGCAAGGAATCTCTCCTGTTCACAA
27057671 ATCA
66 ATCA
27057675 TTTCTTGCAGGGAAT
1 TTTCTTGCAGGGAAT
27057690 CTCTCCTATT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.40
Consensus pattern (69 bp):
TTTCTTGCAGGGAATATTTCCTCTTCACGCATTATTTTGTTGCAAGGAATCTCTCCTGTTCACAA
ATCA
Found at i:27060560 original size:21 final size:22
Alignment explanation
Indices: 27060530--27060574 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
27060520 GAACAAATTG
27060530 TTGATTCTATTTCTTTTTT-TAT
1 TTGATTCTA-TTCTTTTTTGTAT
27060552 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCTTTTTTGTAT
27060573 TT
1 TT
27060575 CTCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.41
21 9 0.41
22 4 0.18
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.71
Consensus pattern (22 bp):
TTGATTCTATTCTTTTTTGTAT
Found at i:27061565 original size:15 final size:15
Alignment explanation
Indices: 27061545--27061575 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
27061535 AGATGTTGTA
27061545 TGTAATTCATCTATT
1 TGTAATTCATCTATT
27061560 TGTAATTCATCTATT
1 TGTAATTCATCTATT
27061575 T
1 T
27061576 CAGTAGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (15 bp):
TGTAATTCATCTATT
Found at i:27064820 original size:70 final size:70
Alignment explanation
Indices: 27064707--27064849 Score: 286
Period size: 70 Copynumber: 2.0 Consensus size: 70
27064697 GTGACGTTCA
27064707 TGGTGTGATTTACCTAAATCTTGAGTTAGTCACTGACCATGCATATGTAACTCATATGTTTTGAT
1 TGGTGTGATTTACCTAAATCTTGAGTTAGTCACTGACCATGCATATGTAACTCATATGTTTTGAT
27064772 ATAAG
66 ATAAG
27064777 TGGTGTGATTTACCTAAATCTTGAGTTAGTCACTGACCATGCATATGTAACTCATATGTTTTGAT
1 TGGTGTGATTTACCTAAATCTTGAGTTAGTCACTGACCATGCATATGTAACTCATATGTTTTGAT
27064842 ATAAG
66 ATAAG
27064847 TGG
1 TGG
27064850 AGGCTTATGC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (70 bp):
TGGTGTGATTTACCTAAATCTTGAGTTAGTCACTGACCATGCATATGTAACTCATATGTTTTGAT
ATAAG
Found at i:27066001 original size:12 final size:12
Alignment explanation
Indices: 27065956--27066068 Score: 53
Period size: 12 Copynumber: 9.8 Consensus size: 12
27065946 ATTCTAAAAA
*
27065956 TAATA-TTATTT
1 TAATATTTAATT
27065967 TAATAGTTTAATAT
1 TAATA-TTTAAT-T
27065981 TAA-ATTTAATT
1 TAATATTTAATT
* *
27065992 TAATACTTAACT
1 TAATATTTAATT
*
27066004 TAATA-GT-ATT
1 TAATATTTAATT
27066014 T--TA-TTAATT
1 TAATATTTAATT
* *
27066023 TAATATTAAAGT
1 TAATATTTAATT
* *
27066035 GATTATCTTAATAT
1 TAATAT-TTAAT-T
27066049 TAA-ATTTAATT
1 TAATATTTAATT
*
27066060 TAATGTTTA
1 TAATATTTA
27066069 TCTTGTATAT
Statistics
Matches: 76, Mismatches: 15, Indels: 21
0.68 0.13 0.19
Matches are distributed among these distances:
8 3 0.04
9 4 0.05
10 3 0.04
11 16 0.21
12 34 0.45
13 10 0.13
14 6 0.08
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (12 bp):
TAATATTTAATT
Found at i:27068369 original size:26 final size:26
Alignment explanation
Indices: 27068333--27068385 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
27068323 CTTGGTAAAG
27068333 TTAGCATACAAAAAAGTCATCATATA
1 TTAGCATACAAAAAAGTCATCATATA
27068359 TTAGCATACAAAAAAGTCATCATATA
1 TTAGCATACAAAAAAGTCATCATATA
27068385 T
1 T
27068386 AACCTGGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (26 bp):
TTAGCATACAAAAAAGTCATCATATA
Found at i:27076019 original size:19 final size:19
Alignment explanation
Indices: 27075983--27076019 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
27075973 TAATTGGGAC
* *
27075983 ATTAATTTAATTTTTTTAA
1 ATTAATTTAATATGTTTAA
27076002 ATTAATTTAATATGTTTA
1 ATTAATTTAATATGTTTA
27076020 TTTTTGGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
ATTAATTTAATATGTTTAA
Found at i:27078828 original size:16 final size:14
Alignment explanation
Indices: 27078807--27078846 Score: 55
Period size: 13 Copynumber: 2.8 Consensus size: 14
27078797 TGTGAGTGAA
27078807 TATAAATATTATATAT
1 TATAAA-ATTATAT-T
27078823 TATAAAA-TATATT
1 TATAAAATTATATT
27078836 TATAAAATTAT
1 TATAAAATTAT
27078847 TTCAATTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.35
14 8 0.35
15 1 0.04
16 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAAAATTATATT
Found at i:27078910 original size:13 final size:13
Alignment explanation
Indices: 27078894--27078919 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27078884 TTTGTGTTCA
27078894 ATTTTTAAATAAT
1 ATTTTTAAATAAT
27078907 ATTTTTAAATAAT
1 ATTTTTAAATAAT
27078920 TTTATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTTAAATAAT
Found at i:27078976 original size:11 final size:11
Alignment explanation
Indices: 27078957--27079004 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
27078947 AAAATATGAA
*
27078957 AATATTATTAT
1 AATAATATTAT
27078968 AATAATATTAAT
1 AATAATATT-AT
* *
27078980 AAAAATATTTT
1 AATAATATTAT
*
27078991 AATAATTTTAT
1 AATAATATTAT
27079002 AAT
1 AAT
27079005 TGAATTAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 20 0.67
12 10 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATAATATTAT
Found at i:27084845 original size:3 final size:3
Alignment explanation
Indices: 27084839--27084877 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
27084829 CTCCTCCTCC
*
27084839 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
27084878 CTCCTCCTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:27088642 original size:66 final size:66
Alignment explanation
Indices: 27088532--27088661 Score: 199
Period size: 66 Copynumber: 2.0 Consensus size: 66
27088522 TGAAGCACTA
*
27088532 TTGGCTACTTTCTATAATGTTTTCACTAAACTGCATGAGATTCCGTCACCTTAATCGCAGGATCT
1 TTGGCTACTTTCTATAATGTTTTCACTAAACTGCATGAGATTCCGTCACCTCAATCGCAGGATCT
27088597 C
66 C
* * * *
27088598 TTGGCTACTTTCTATGATGTTTTCACTAAACTGCAT-AGGCTTCCGTCGCCTCAATCGTAGGATC
1 TTGGCTACTTTCTATAATGTTTTCACTAAACTGCATGA-GATTCCGTCACCTCAATCGCAGGATC
27088662 ATGCCATTCC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 1 0.02
66 57 0.98
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (66 bp):
TTGGCTACTTTCTATAATGTTTTCACTAAACTGCATGAGATTCCGTCACCTCAATCGCAGGATCT
C
Found at i:27098297 original size:30 final size:30
Alignment explanation
Indices: 27098261--27098381 Score: 95
Period size: 30 Copynumber: 4.1 Consensus size: 30
27098251 ACTAGGTGCA
*
27098261 GGTGATTTTAGTTTCCAGGTACTATGTACC
1 GGTGATTATAGTTTCCAGGTACTATGTACC
* * ** *
27098291 GGTGATTAAAGTTTCCAAGTTTTATGTACT
1 GGTGATTATAGTTTCCAGGTACTATGTACC
* * ** * * * *
27098321 GGTG-TAATAGTTTTCAGGCCCTCTATGCT
1 GGTGATTATAGTTTCCAGGTACTATGTACC
27098350 GGTGA-TATAGTTT-CAGGTACTATGTACC
1 GGTGATTATAGTTTCCAGGTACTATGTACC
27098378 GGTG
1 GGTG
27098382 GTGGATACCA
Statistics
Matches: 67, Mismatches: 23, Indels: 4
0.71 0.24 0.04
Matches are distributed among these distances:
28 13 0.19
29 26 0.39
30 28 0.42
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (30 bp):
GGTGATTATAGTTTCCAGGTACTATGTACC
Found at i:27104153 original size:75 final size:75
Alignment explanation
Indices: 27104017--27104168 Score: 223
Period size: 75 Copynumber: 2.0 Consensus size: 75
27104007 GGGCGACCCA
* * *
27104017 TGCAACCTTAGCCATCAAATAGTGGAAATGGGCCCACAAGCCCAAGACATTTGCCCGTGTGGGCC
1 TGCAACCTTAGCCATCAAATAGTGAAAATGGGCCCACAAGCCCAAGAAATTTGCCCATGTGGGCC
27104082 TACACGCCCG
66 TACACGCCCG
* * * * *
27104092 TGCAACCTTAGCTATCAAATAGTGAAAATGGGCCCATAAGCCCATGAAATTTTCCCATGTGGGCT
1 TGCAACCTTAGCCATCAAATAGTGAAAATGGGCCCACAAGCCCAAGAAATTTGCCCATGTGGGCC
*
27104157 TCCACGCCCG
66 TACACGCCCG
27104167 TG
1 TG
27104169 TAGCCCACAC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (75 bp):
TGCAACCTTAGCCATCAAATAGTGAAAATGGGCCCACAAGCCCAAGAAATTTGCCCATGTGGGCC
TACACGCCCG
Found at i:27106120 original size:24 final size:24
Alignment explanation
Indices: 27106093--27106149 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
27106083 CTATTTAAAA
*
27106093 ACTGAAAATGCTATAGATAGTAA-T
1 ACTGAAAATACTATAGATAG-AAGT
* *
27106117 ACTGAGACTACTATAGATAGAATGT
1 ACTGAAAATACTATAGATAGAA-GT
27106142 ACTGAAAA
1 ACTGAAAA
27106150 CACTCAGGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.08
24 17 0.65
25 7 0.27
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.26
Consensus pattern (24 bp):
ACTGAAAATACTATAGATAGAAGT
Done.