genome.fa.s1900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2952
Parameters: 2 7 7 80 10 50 1000
Length:  44082

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3616--3789	27	6.5	27	80	3	172	26	16	27	29	1.96
3616--3769	81	1.9	81	86	2	220	27	16	27	29	1.97
5134--5525	47	8.3	47	93	1	622	32	8	29	28	1.88
5134--5525	143	2.8	143	91	2	621	32	8	29	28	1.88
5134--5525	190	2.1	190	93	0	658	32	8	29	28	1.88
5644--5745	37	2.8	37	93	0	168	25	18	29	26	1.98
7321--7444	61	2.0	61	98	0	239	28	6	12	53	1.62
13647--13846	27	7.4	27	88	2	240	36	19	19	24	1.95
15137--15223	40	2.2	40	81	4	95	27	17	22	32	1.96
15152--15311	40	4.0	40	86	3	214	25	16	24	33	1.95
17037--17185	57	2.6	57	78	11	153	30	17	20	31	1.96
21003--21027	3	8.3	3	100	0	50	32	0	0	68	0.90
22267--22318	26	2.1	24	82	7	59	40	13	11	34	1.81
23035--23070	10	3.6	10	84	0	54	52	2	8	36	1.46
23118--23169	20	2.6	20	87	0	86	13	30	34	21	1.92
25230--25491	39	6.7	40	87	7	319	24	27	22	25	2.00
25230--25491	118	2.2	119	83	11	326	24	27	22	25	2.00
26569--26593	13	1.9	13	100	0	50	0	8	4	88	0.64
27863--27932	21	3.2	21	64	25	54	38	25	12	22	1.90
27850--27940	45	2.0	45	93	0	155	36	24	14	25	1.93
31166--31371	28	7.4	28	91	2	281	32	28	13	25	1.94
37583--37760	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37584--37739	82	1.9	81	88	3	233	26	15	28	29	1.96
37580--37760	82	2.2	81	83	2	229	27	15	27	29	1.96

Tables:   1

The End!