genome.fa.s1904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2592
Parameters: 2 7 7 80 10 50 1000
Length:  41430

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6480--6729	42	5.9	42	78	10	260	17	28	34	20	1.95
6938--7016	24	3.3	24	85	5	106	6	37	35	20	1.78
7021--8032	43	23.9	43	78	6	1003	16	32	33	17	1.93
7021--8032	85	12.0	84	82	4	739	16	32	33	17	1.93
7034--8061	256	4.1	254	84	5	1058	16	32	33	17	1.93
7092--7827	299	2.5	299	92	1	1210	16	32	33	17	1.93
7961--8039	34	2.3	34	93	2	131	7	35	37	18	1.80
8038--8086	25	2.0	25	91	0	80	12	22	46	18	1.82
8074--8166	42	2.2	44	90	3	145	12	27	39	19	1.88
16068--16359	42	6.9	42	80	9	319	17	28	34	19	1.95
16568--16646	24	3.3	24	85	5	106	6	37	35	20	1.78
16651--17662	43	23.9	43	78	6	1003	16	32	33	17	1.93
16651--17662	85	12.0	84	82	4	739	16	32	33	17	1.93
16664--17691	256	4.1	254	84	5	1058	16	32	33	17	1.93
16722--17457	299	2.5	299	92	1	1210	16	32	33	17	1.93
17591--17669	34	2.3	34	93	2	131	7	35	37	18	1.80
17668--17716	25	2.0	25	91	0	80	12	22	46	18	1.82
17704--17796	42	2.2	44	90	3	145	12	27	39	19	1.88
25699--25948	42	5.9	42	78	10	244	18	28	34	19	1.95
26157--26235	24	3.3	24	85	5	106	6	37	35	20	1.78
26240--27251	43	23.9	43	78	6	1003	16	32	33	17	1.93
26240--27251	85	12.0	84	82	4	739	16	32	33	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26253--27282	256	4.1	254	84	5	1062	16	31	33	17	1.93
26311--27046	299	2.5	299	92	1	1210	16	32	33	17	1.93
27180--27258	34	2.3	34	93	2	131	7	35	37	18	1.80
27256--27307	25	2.1	25	92	0	86	9	21	51	17	1.73
27293--27385	42	2.2	44	90	3	145	12	27	39	19	1.88
35284--35545	42	5.9	42	72	18	185	17	29	34	18	1.94
35284--35457	85	2.0	85	80	6	192	17	28	33	19	1.95
35753--35831	24	3.3	24	85	5	106	6	37	35	20	1.78
35836--36847	43	23.9	43	77	7	955	16	32	33	17	1.93
35836--36847	85	12.0	84	81	6	691	16	32	33	17	1.93
35849--36878	256	4.1	254	82	6	1010	16	31	33	17	1.93
35907--36598	299	2.3	298	93	1	1172	16	32	32	18	1.93
36776--36854	34	2.3	34	93	2	131	7	35	37	18	1.80
36852--36903	25	2.1	25	92	0	86	9	21	51	17	1.73
36889--36981	42	2.2	44	90	3	145	12	27	39	19	1.88

Tables:   1

The End!