Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold719
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25748
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Found at i:1797 original size:17 final size:20
Alignment explanation
Indices: 1775--1816 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1765 CCCCATTTTA
1775 ATTTATTTT-A-C-AAAAAT
1 ATTTATTTTAACCAAAAAAT
1792 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
1812 ATTTA
1 ATTTA
1817 AAACCATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 1 0.05
19 1 0.05
20 11 0.50
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:2808 original size:19 final size:20
Alignment explanation
Indices: 2784--2827 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
2774 ACCCATTTTA
2784 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
2803 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
2823 ATTTA
1 ATTTA
2828 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:3315 original size:18 final size:20
Alignment explanation
Indices: 3292--3334 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
3282 CCCCATTTTA
3292 ATTTATTTT-A-CAAAAAAT
1 ATTTATTTTAACCAAAAAAT
3310 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
3330 ATTTA
1 ATTTA
3335 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 9 0.39
19 1 0.04
20 13 0.57
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:3599 original size:504 final size:507
Alignment explanation
Indices: 1--20593 Score: 33104
Period size: 505 Copynumber: 40.9 Consensus size: 507
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
66 TCTATCAAAGATAAGCAGAATTT-GTGGTCTGGAAAGGAAAGAGGAAAATATT-GGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
129 CGTGGAAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATT
131 CGTGG-AAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATT
*
193 TTTCTAAAAATATTTTTATTTTCTGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
195 TTTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
258 AATTAAA-CCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
322 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-G-A-A-TATTTATCG-TTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
382 AATTAAGCTAACTAATTTTTTTTAAAGAAATGA--GTAAACCCGATTAACTCCTAGCTTTCACCC
389 AATTAAGCTAAC--ATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCC
*
445 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTT-GGGCGTTACAAAAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
500 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
563 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGG-AAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
625 CGTGGAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCAT-ATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
687 TTCTAAAAATATTTTTATTTTCCAGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTCC-GAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
752 AATGAAACCCCATTTTAATTTATTTTTCAAT-AAA-ATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
815 CATAAAATTGATTTCTCTAAAAATA-TTTTATTTTCCGGAATATTATTTA-C-ATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
877 AATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACC
389 AATTAAGCTAAC--ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
942 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAA-AGC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGA-C
999 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1064 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
1129 CGTGGAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTAATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
1193 TTCTAAAAATATTTTTATTTTCCGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTAA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
1258 TGAAACCCCATTTTAATTTA-TTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
261 TGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
1322 TAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-GAATA--ATTTA-CGATTTTTAAATGAAA
326 TAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
*
1383 TTAAGCTAACTATTTTTTTAAAAGAAATGA--GTAAACCCGATTAACTCCTAGCTTTCACCCGGA
391 TTAAGCTAAC-ATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCGG-
* *
1446 AACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAGCAC
454 AACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
* *
1501 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGCACAATTAGGATTGTGATCGAAGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
1566 TCTATCAAAGATAAGCAGAATCTGGTGGTCTGGAAAGGAAACAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
1631 CGTGGAAGAA-TTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATA-TT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
1694 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-TA
*
1759 ATGAAACCCCATTTTAATTTATTTTAC-A-AAAATATTTATTTTAACCAAAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
*
1822 ATAAAATTGCTTTCTCTAAAAATATTTTTA-TTTCCGGAATATTATTTACCGATTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
* * * *
1886 ATTAAGATAACGATTTTTTTTTAAAAGGAAATGACTGGTAAGCCTGATAAACTCGTAGCTTTCAC
390 ATTAAGCTAAC-A--TTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
*
1951 CCGGAACCCGATAAGCTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-C
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
2008 -ACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
2072 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAA-AGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
2136 CGTGAAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
2201 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
2266 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
2331 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* *
2395 AAATTAAGCTAACTATTTTTTTAAATCACGAACT-A--GTAAACCCGATTAACTCCTAG-TTTCA
388 AAATTAAGCTAAC-ATTTTTTTAAA--A-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCA
* *
2456 CCCGGAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAGAC
449 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
*
2515 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
2580 TCTATC----ATAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
2641 CGT-GAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGCGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
2705 TT-TAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-TA
* *
2769 ATGAAA-CCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
*
2833 ATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
*
2898 ATTAAGATAACGAATTTTTTTAAAAGGAAATGACTGTAAGCCCGA-TAACTCCTAGC-TTCACCC
390 ATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCC
2961 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
3018 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
3083 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
3148 CGTGGAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
3212 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
*
3277 TGAAACCCCATTTTAATTTATTTTACAA-AAAATATTTATTTTAACCAAAAAATATTTAAAACCA
261 TGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
*
3341 TAAAATTG-CTT-TCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
326 TAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
*
3404 TTAAGATAAC-TTTTTTTAAAAGAAATGA-TGGTAAGCCCGATTAAACTCCTAGCTTTCACCCGG
391 TTAAGCTAACATTTTTTTAAAAGAAATGACT-GTAAGCCCGATT-AACTCCTAGCTTTCACCCGG
3467 AACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
454 AACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
3522 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
3587 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
3652 CGTGGAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
3716 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
3781 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
3846 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
3910 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * *
3971 CGTAACCCGATAAACTTACTCAAAACTAGTTGACCTA-TTTTCGGGCGTTACAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
4028 AACA-ACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * *
4092 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
4157 CGT-GAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
4220 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
* *
4285 TGAAACCCCATTTTAATTTATTTTAC-AGAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
261 TGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
*
4349 TAAAATTGCTTTCTCTAAAAATA-TTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
326 TAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
* *
4413 TTAAGATAACGAATTTTTTTAAAAGGAAATGACTGTAAGCCCGATAAACTCCTAGC-TTCACCCG
391 TTAAGCTAAC--ATTTTTTTAAAA-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCG
4477 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
453 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
4533 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
4598 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAA-ATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
4662 CGTGGAAGAAATTGTGTCAGCCT-AAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
4725 TTCT-AAAATATTTTTA-TTTCTGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-A
* *
4788 ATTAAA-CCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA--
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
*
4850 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-GAATATTATTTATC-AGTTTTTAAATGA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATGA
*
4913 AATTAAGCTAACTATTTTTTT-----AAAT--CTAGTAAACCCGATTAACTCCTAG-TTTCACCC
389 AATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACCC
* *
4970 GGAA-CC-ATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
5025 -A-ATACTTTGGAAAATTTG-TATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * *
5087 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
5152 CGT-GAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
5216 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-TA
*
5281 ATGAAA-CCCATTTTAATTTATTTTACAA-AAAATATTTATTTTAACC-AAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
5343 ATAAAATTG-TTTCTCTAAAAATATTTTT-TTTTCCGGAATATTATTTA-CG-TTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
* *
5404 ATTAAGATAACGAATTTTTTAAAAGGAAATGA--GT-A-CCCGATTAACTCCTAGC-TTCACCC-
390 ATTAAGCTAAC-ATTTTTTTAAAA-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCG
5463 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
453 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
5519 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
5584 TC--TCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
5647 CGT-GAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATA-TT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
5710 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
5775 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
5840 CATAAAATTGATTTCTCTAAAAATATTTTTA-TTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
5903 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * *
5964 CGGAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTT-CGGCGTTACAAAAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
6020 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * *
6085 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGA--AAAAAATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
6148 CGT-GAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGA-ATTCGTGATA-TT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
6210 TTCTAAAAA-ATTTTTATTTTCTGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
*
6274 TGAAACCCCATTTTAATTTATTTTAC-A-AAAATATTTATTTTAACCAAAAAA-ATTTAAAACCA
261 TGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
6336 TAAAATTGATTTCTCTAAAAATA-TTTTATTTTCCGGAATATTATTTACCG-TTTTTAAATGAAA
326 TAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
* *
6399 TTAAGATAACGAATTTTTTTAAAA-AAATGACTGTAAGCCCGATTAAGTCCTAGC-TTCACCCGG
391 TTAAGCTAAC--ATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCGG
*
6462 AACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA-GGCGTTACAACAC
454 AACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
6515 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
6580 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATT-GGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
6644 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
6709 TTCT-AAAATATTTTTATTTTCCGGAATATTATATA--TATTTAGTTAATATTGTAACTTCTC-A
196 TTCTAAAAATATTTTTATTTTCC-GAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTA
*
6770 ATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
* *
6835 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC--AATATTATTTA--TAGTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
* * *
6896 ATTAAGCTAACTATTTTTTT----TAAATCACTAGTAA-CCCGATTAACTCCTAGTTTTCACCCG
390 ATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACCCG
* * *
6956 TAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
453 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
7012 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
7075 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGA-GAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* * *
7139 CGTGAAGAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGCGATATT
131 CGTGGA-AGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATT
7203 TTTCTAAAAATATTTTTATTTTCCGAA-ATTTATATACCTATTTAGTTAATATTGTAACTTCTCT
195 TTTCTAAAAATATTTTTATTTTCCGAATA-TTATATACCTATTTAGTTAATATTGTAACTTCTC-
* *
7267 TAAT-AAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAA
258 TAATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA
*
7331 CCATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCC-GAATATTATTTACCGATTTTTAAATG
323 CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATG
*
7395 AAATTAAGATAACGAATTTTTTTAAAAGGAAATGACTGGTAAGCCCGATTAACTCCTAGC-TTCA
388 AAATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCA
7459 CCC-GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-C
449 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
7516 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
7581 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AA-A-G-----A----G-G-TACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
7632 CGTGGAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
* *
7695 TTCTAAAAATATTTTTATTCT-GGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-A
* *
7759 ATTAAACCCCATTTCAATTTA-TTTTCAATAAAATATTTATTTTAACC-AAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
* *
7822 ATAAAATTGATTTCTCTAAAAATATTTTTA-TTTCCAGAATATTATTTATC-AGTTTTTAAATGA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATGA
* * *
7885 AATTAAGCTAAC-TATTTTTT-----AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCC
389 AATTAAGCTAACAT-TTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACCC
* *
7944 GTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTT-GGGCGTTACAAAGAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
8000 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
8063 TGTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAAAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
8128 CGTGAAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
8193 TTCTAAAAATATTTTTATTTT-TGAATATTATATACCTATTTAGTTAATATTGTAACTTCTTTCT
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTC--TC-
*
8257 TAATG-AACCCCATTTTAATTTATTTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAA
258 TAATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA
8321 CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATG
323 CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATG
* *
8386 AAATTAAGATAACGATTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCTTTCAC
388 AAATTAAGCTAAC-ATTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
*
8451 CCGGAACCCGATAAACTTCCTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
*
8510 AACATACTTTGGAAAATTTGCGACTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
8575 TCTATC-AAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
8639 CGT-G-A-AA-TTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
8700 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
*
8765 AATTAAACCCCATTTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA
259 AATGAAACCCCA-TTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA
* *
8830 CAATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-GAATATTATTTATC-AGTTTTTAAAT
323 CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAAT
*
8893 GAAATTAAGCTAACTATTTTTTT-----AAATGACTAGTAAACCCGATTAACTCCTAG-TTTCAC
387 GAAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
* *
8952 CCGGAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
9011 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
*
9076 TCTATCAAAG-TAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
9139 CGT-GAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
9202 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-TA
* *
9267 ATGAAACCCCATTTTAATTTATTTTACAAGAAAATA-TT-TTTTAACC-AAAAA-ATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
9328 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
* *
9393 ATTAAGCTAACGATTTTTTTAAAAGGAAATGACTGTAAG--AGATAAACTCCTAGC-TTCACCCG
390 ATTAAGCTAAC-ATTTTTTTAAAA-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCG
9455 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
453 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
9510 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
9575 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
9639 CGT-GAAGAA-TTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
9702 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
9767 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
9832 CATAAAATTGATTTCTCTAAAAA-ATTTTTATTTTCCAGAATATTATTTA--G-TTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
9893 AATTAAGCTAACTATTTTTTT----TAAATGACTAGTAAGCCCGATTAACTCCTAGTTTTCACCC
389 AATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACCC
*
9954 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTT-CGGCGTTACAAG-C
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
*
10008 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
*
10073 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
10137 CGT-GAAGAA-TTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
10200 TTCTAAAAATATTTTTATTTTCTGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-A
* *
10265 ATTAAACCCCATTTCAATTTA-TTTTCAATAAAATATTTATTTTAACC-AAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
10328 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-GAATATTATTTA-C-ATTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
*
10390 ATTAAGCTAACTATTTTTTT-----AAATGACTAGTAAACCCGATTAACTCCTAG-TTTCACCC-
390 ATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACCCG
10448 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTT-GGGCGTTACAAGAC
453 GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
10502 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
10565 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGA-GAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
10628 CGTGAAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
10691 TTCTAAAAAT-TTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTA
196 TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-TA
*
10755 ATGAAACCCCATTTTAATTTA-TTTT-AAAAAAATATTTATTTTAACCAAAAAATATTTAAAACC
260 ATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACC
10818 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTA-CGATTTTTAAATGAA
325 ATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAA
* *
10882 ATTAAGCTAACTAATTTTTTTAAAAGGAAATGA--GTAAACCCGATTAACTCCTAGCATTCACCC
390 ATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCC
10945 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
11002 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
11067 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
11132 CGT-GAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
11195 TTCT-AAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
11259 AATTAAACCCCATTTCAATTTA-TTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
11323 CATAAAATTGATTTCTCTAAAAATATTTTTA-TTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* *
11386 AAATTAAGCTAACTATTTTTTT-----AAATCACTAGTAAACCCGATTAACTCCTAG-TTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * * *
11445 CGTAACCCGATAAACTTACTCAAAACTAGT-TA-CTACTATTTAGTG-G--ACAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTA-TTTTTAGGGCGTTACAAGAC
11498 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
*
11561 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGG-AAGA-GAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
11624 CGT-GAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATG--ATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
11686 TTCTAAAAATATTTTTATTTT-CGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
*
11750 AATGAAACCCCATTTTAATTTA-TTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
11814 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* * *
11879 AATTAAGATAA-ATTTCTTTTAAAGGAAATGACTGTAAGCCCGATTAAACTCCTAGCATTCACCC
389 AATTAAGCTAACATTT-TTTTAAAAGAAATGACTGTAAGCCCGATT-AACTCCTAGCTTTCACCC
11943 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
12000 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
12065 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
12128 CGT-GAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
12190 TT-TAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
*
12254 AATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
12319 CATAAAATTGATTTCTCTAAAAATA-TTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
12383 AATTAAGATAACGATTTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC-TTCAC
389 AATTAAGCTAAC-A-TTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
12447 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTA-TTTTAGGGCGTTACAAGCAC
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
12505 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
12570 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
12635 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
12700 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
12765 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* * *
12830 CATAATATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
12894 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * *
12955 CGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
13013 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
13078 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* * *
13141 CGTGAAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGCGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
13205 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
*
13270 AATGAAACCCCATTTTAATTTATTTTTCAAGAAAATATTTATTTTAACC-AAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
13334 CATAAAATTGCTTTCTCTAAAAATA-TTTT-TTTTCCGGAATATTATTTA-CGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
13396 AATTAAGATAACGAATTTTTTTAAAGGAAATGACTGTAAGCCCGA-TAACTCCTAGC-TTCACCC
389 AATTAAGCTAAC--ATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCC
* *
13459 GGAACCCGATAAGCTTCCTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
13516 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
13581 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
13646 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
13711 TTCTAAAAATATTTTTATTTTCCAGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCC-GAATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
13776 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
13841 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
13906 AATTAAGCTAACGAATTTTTTTAAAGGAAATGACTGTAAACCCGATTAACTCCTAG-TTTCACCC
389 AATTAAGCTAAC--ATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCC
* * *
13970 GTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
452 GGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
14027 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
14092 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
14155 CGTGAAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
14220 TTCTAAAAATATTTTTATTTT-CGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
* *
14284 AATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
14349 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
14414 AATTAAGATAACGAATTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCTTTCAC
389 AATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
14479 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
14538 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
14603 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
14667 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
14732 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
14797 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
14862 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
14926 AAATTAAGTTAACTATTTTTTT-----AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * *
14986 CGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
15044 AACATACTTTGGAAAATTT--GATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
15107 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
15170 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
15235 TTCTAAAAATATTTTTATTTTTCGAAATATTATATACCTATTTAGTTAATATTGTAA-TCTCTCT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACT-TCTC-
15299 TAATGAAACCCCATTTTAATTTATTTTTACAA-AAAATATTTATTTTAACCAAAAAATATTTAAA
258 TAATGAAACCCCATTTTAATTTATTTTT-CAATAAAATATTTATTTTAACCAAAAAATATTTAAA
*
15363 ACCATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAAT
322 ACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAAT
* * *
15428 GAAATTAAGATAACGAATTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTC
387 GAAATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTC
15493 ACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
448 ACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
15554 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
15619 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* * *
15684 CGTGAAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGCGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
15748 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
* *
15813 AATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
15878 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* * *
15943 AATTAAGATAACGAATTTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTCA
389 AATTAAGCTAAC--A-TTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCA
16008 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
449 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
16068 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
16133 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
16198 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
* *
16263 TT-TAAAAATACTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
16327 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
16392 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
16456 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* *
16517 CGTAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
16575 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
16640 TCTATCAAAG--AAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
16703 CGT-GAAGAATTTGTGTCAGCCTAAAAGCATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
16767 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
* *
16832 AATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
16897 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* * *
16962 AATTAAGATAACGAATTTCTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTCA
389 AATTAAGCTAAC--ATTT-TTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCA
*
17027 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCGC
449 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
17087 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
17152 TCTATCAAA-ATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
17216 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
17281 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
17346 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
17411 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
17475 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * *
17536 CGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGAC
*
17594 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * *
17659 TCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* * *
17724 CGTGAAAGAATTTGTGTCAGCCTAAAAGCATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
17789 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
* *
17854 AATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
17919 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* * *
17984 AATTAAGATAACGAATTTCTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTCA
389 AATTAAGCTAAC--ATTT-TTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCA
*
18049 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCC
449 CCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
18108 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
18173 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
18238 CGTGGAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
18301 TTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
18366 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* * *
18431 CATAAAATTGATTTCTCTAAAAATATTTTTAATTTCCAG-ATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * * *
18494 AAATTAAGCTAACTATTTTTTT----TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* * * *
18555 CGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTAAAAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTT-ACAAGAC
* * *
18613 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGAACAATTAGGATTGTAATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * * *
18678 TCTATCAAAGCA-AAGTAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGTGATACTC
66 TCTATCAAAG-ATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTC
* * * *
18742 CCGCGAAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGCGATATT
130 CCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATT
* *
18807 TTTCTAAAAATATTTTTATTTTTCGAAATATTATATACCTATTTAGTTAATATTATAACTTCTCT
195 TTTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-
* *
18872 TAATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAA
258 TAATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAA
*
18937 CCATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATG
323 CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATG
* * *
19002 AAATTAAGATAACGAATTTCTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTC
388 AAATTAAGCTAAC--ATTT-TTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTC
19067 ACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
448 ACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
19128 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* * * * * *
19193 TCTATCCAAGGTAAGCAGAATTTGGTGGTCTGCAAAGGATAGAAGAAAATATTAGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
19258 CGTGAAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
19323 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
* *
19388 AATGAAACCCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
19453 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
19518 AATTAAGATAACGAATTTTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC-TTCAC
389 AATTAAGCTAAC--ATTTTTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCAC
19582 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGCAC
450 CCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAG-AC
19641 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
19706 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
*
19771 CGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATA-TT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
*
19835 TT-TAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTC
196 TTCTAAAAATATTTTTATTTTC-CGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCT-
* *
19899 AATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
* *
19964 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-AGTTTTTAAATG
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGA-TTTTTAAATG
* * *
20028 AAATTAAGCTAACTATTTTTTT-----AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACC
388 AAATTAAGCTAAC-ATTTTTTTAAAAGAAATGACT-GTAAGCCCGATTAACTCCTAGCTTTCACC
* *
20088 CGTAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAGAC
451 CGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
*
20145 AACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
1 AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
* *
20210 TCTATCAAAG-TAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCC
66 TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
* *
20274 CGTGAAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTT
131 CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
20339 TTCTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTT
196 TTCTAAAAATATTTTTATTTTCCG-AATATTATATACCTATTTAGTTAATATTGTAACTTCTC-T
*
20404 AATGAAACCCCATTTTAATTTATTTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAAC
259 AATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAAC
*
20469 CATAAAATTGCTTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
324 CATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGA
* *
20534 AATTAAGATAACGAATTTCTTTTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC
389 AATTAAGCTAAC--ATTT-TTTTAAAA-GAAATGACT-GTAAGCCCGATTAACTCCTAGC
20594 ATTACAAGTA
Statistics
Matches: 18908, Mismatches: 712, Indels: 934
0.92 0.03 0.05
Matches are distributed among these distances:
481 27 0.00
482 97 0.01
483 43 0.00
484 21 0.00
485 1 0.00
486 1 0.00
487 6 0.00
488 6 0.00
489 208 0.01
490 267 0.01
491 378 0.02
492 364 0.02
493 325 0.02
494 391 0.02
495 744 0.04
496 364 0.02
497 469 0.02
498 652 0.03
499 339 0.02
500 502 0.03
501 1108 0.06
502 800 0.04
503 988 0.05
504 1374 0.07
505 1654 0.09
506 1112 0.06
507 1064 0.06
508 970 0.05
509 521 0.03
510 363 0.02
511 768 0.04
512 633 0.03
513 786 0.04
514 971 0.05
515 591 0.03
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (507 bp):
AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCT
TCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCC
CGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTT
TTCTAAAAATATTTTTATTTTCCGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAA
TGAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCA
TAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAA
TTAAGCTAACATTTTTTTAAAAGAAATGACTGTAAGCCCGATTAACTCCTAGCTTTCACCCGGAA
CCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAGAC
Found at i:4323 original size:18 final size:20
Alignment explanation
Indices: 4300--4342 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4290 CCCCATTTTA
*
4300 ATTTATTTT-A-CAGAAAAT
1 ATTTATTTTAACCAAAAAAT
4318 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
4338 ATTTA
1 ATTTA
4343 AAACCATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 1 0.05
20 12 0.55
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:5319 original size:18 final size:19
Alignment explanation
Indices: 5296--5337 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
5286 ACCCATTTTA
5296 ATTTATTTT-ACAAAAAAT
1 ATTTATTTTAACAAAAAAT
*
5314 ATTTATTTTAACCAAAAAT
1 ATTTATTTTAACAAAAAAT
5333 ATTTA
1 ATTTA
5338 AAACCATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTATTTTAACAAAAAAT
Found at i:6311 original size:17 final size:19
Alignment explanation
Indices: 6288--6329 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
6278 ACCCCATTTT
6288 AATTTATTTT-A-CAAAAA
1 AATTTATTTTAACCAAAAA
*
6305 TATTTATTTTAACCAAAAA
1 AATTTATTTTAACCAAAAA
6324 AATTTA
1 AATTTA
6330 AAACCATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 1 0.05
19 11 0.52
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTTATTTTAACCAAAAA
Found at i:7308 original size:19 final size:20
Alignment explanation
Indices: 7284--7327 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
7274 CCCCATTTTA
7284 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
7303 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
7323 ATTTA
1 ATTTA
7328 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:7809 original size:18 final size:19
Alignment explanation
Indices: 7775--7816 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7765 CCCCATTTCA
*
7775 ATTTATTTTCAA-TAAAAT
1 ATTTATTTTCAACAAAAAT
7793 ATTTATTTT-AACCAAAAAT
1 ATTTATTTTCAA-CAAAAAT
7812 ATTTA
1 ATTTA
7817 AAACCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTATTTTCAACAAAAAT
Found at i:10315 original size:18 final size:19
Alignment explanation
Indices: 10281--10322 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
10271 CCCCATTTCA
*
10281 ATTTATTTTCAA-TAAAAT
1 ATTTATTTTCAACAAAAAT
10299 ATTTATTTT-AACCAAAAAT
1 ATTTATTTTCAA-CAAAAAT
10318 ATTTA
1 ATTTA
10323 AAACCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTATTTTCAACAAAAAT
Found at i:10793 original size:17 final size:19
Alignment explanation
Indices: 10771--10812 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
10761 CCCCATTTTA
10771 ATTTATTTT-A-AAAAAAT
1 ATTTATTTTAACAAAAAAT
10788 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAA-CAAAAAAT
10808 ATTTA
1 ATTTA
10813 AAACCATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 1 0.05
20 12 0.55
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTATTTTAACAAAAAAT
Found at i:14325 original size:19 final size:20
Alignment explanation
Indices: 14301--14344 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
14291 CCCCATTTTA
14301 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
14320 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
14340 ATTTA
1 ATTTA
14345 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:15341 original size:19 final size:20
Alignment explanation
Indices: 15317--15360 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
15307 CCCCATTTTA
*
15317 ATTTATTTTTA-CAAAAAAT
1 ATTTATTTTAACCAAAAAAT
15336 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
15356 ATTTA
1 ATTTA
15361 AAACCATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:15854 original size:19 final size:20
Alignment explanation
Indices: 15830--15873 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
15820 CCCCATTTTA
15830 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
15849 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
15869 ATTTA
1 ATTTA
15874 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:16873 original size:19 final size:20
Alignment explanation
Indices: 16849--16892 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
16839 CCCCATTTTA
16849 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
16868 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
16888 ATTTA
1 ATTTA
16893 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:17895 original size:19 final size:20
Alignment explanation
Indices: 17871--17914 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
17861 CCCCATTTTA
17871 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
17890 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
17910 ATTTA
1 ATTTA
17915 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:18914 original size:19 final size:20
Alignment explanation
Indices: 18890--18933 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
18880 CCCCATTTTA
18890 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
18909 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
18929 ATTTA
1 ATTTA
18934 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:19429 original size:19 final size:20
Alignment explanation
Indices: 19405--19448 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
19395 CCCCATTTTA
19405 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
19424 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
19444 ATTTA
1 ATTTA
19449 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:20962 original size:427 final size:425
Alignment explanation
Indices: 20167--20984 Score: 1433
Period size: 427 Copynumber: 1.9 Consensus size: 425
20157 AAAATTTGTG
20167 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGTAAGCAGAATTT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGTAAGCAGAATTT
* *
20232 GGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAATTTGTGTCAGCCT
66 GGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAAATTGTGTCAGCCT
* *
20297 AAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTTTTCTAAAAATATTTTTATTTTCC
131 AAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATACTTTTATTTTCC
* *
20362 GAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTAATGAAACCCCATTTTAATTTAT
196 GAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTCAATTTAT
*
20427 TTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGCTTTCTCTAAAAA
261 TTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAA
* *
20492 TATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATTAAGATAACGAATTTCTTTT
326 TATTTTTATTTTCCAGAATATTATTTACAGATTTTTAAATGAAATTAAGATAAC-AATTT-TTTT
20557 AAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC
389 AAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC
20594 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAG-TAAGCAGAATT
* *
20659 TGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
65 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAAATTGTGTCAGCC
20724 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTT-TAAAAATACTTTTATTTTC
130 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATACTTTTATTTTC
* * *
20788 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTCAATTTA
195 CGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTCAATTTA
*
20853 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
260 TTTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* *
20918 ATATTTTTATTTTCCAGAATATTATTTATCAG-TTTTTAAATGAAATTAAGTTAACTATTTTTTT
325 ATATTTTTATTTTCCAGAATATTATTTA-CAGATTTTTAAATGAAATTAAGATAACAATTTTTTT
20982 AAA
389 AAA
20985 TCACTAGTAA
Statistics
Matches: 372, Mismatches: 17, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
425 7 0.02
426 4 0.01
427 243 0.65
428 118 0.32
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (425 bp):
ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGTAAGCAGAATTT
GGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAAATTGTGTCAGCCT
AAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATACTTTTATTTTCC
GAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTCAATTTAT
TTTTCAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAA
TATTTTTATTTTCCAGAATATTATTTACAGATTTTTAAATGAAATTAAGATAACAATTTTTTTAA
AAGGAAATGACTGGTAAGCCCGATAAACTCCTAGC
Found at i:21379 original size:19 final size:20
Alignment explanation
Indices: 21355--21398 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
21345 CCCCATTTTA
21355 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
21374 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
21394 ATTTA
1 ATTTA
21399 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:22399 original size:19 final size:20
Alignment explanation
Indices: 22375--22418 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
22365 ACCCATTTTA
22375 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
22394 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
22414 ATTTA
1 ATTTA
22419 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:23419 original size:19 final size:20
Alignment explanation
Indices: 23395--23438 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
23385 CCCCATTTTA
23395 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
23414 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
23434 ATTTA
1 ATTTA
23439 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:23931 original size:19 final size:19
Alignment explanation
Indices: 23907--23949 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
23897 CCCCATTTTA
23907 ATTTATTTT-ACAATAAAAT
1 ATTTATTTTAACAA-AAAAT
*
23926 ATTTATTTTAACCAAAAAT
1 ATTTATTTTAACAAAAAAT
23945 ATTTA
1 ATTTA
23950 AAACCATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTATTTTAACAAAAAAT
Found at i:24932 original size:17 final size:19
Alignment explanation
Indices: 24905--24946 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
24895 ACCCATTTTA
24905 ATTTATTTTAA-AAAAAAT
1 ATTTATTTTAACAAAAAAT
24923 ATTT-TTTTAACCAAAAAAT
1 ATTTATTTTAA-CAAAAAAT
24942 ATTTA
1 ATTTA
24947 AAACCATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
19 11 0.52
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTATTTTAACAAAAAAT
Found at i:25620 original size:507 final size:510
Alignment explanation
Indices: 20594--25748 Score: 8302
Period size: 506 Copynumber: 10.2 Consensus size: 510
20584 AACTCCTAGC
20594 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
*
20659 TGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
*
20724 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTT-TAAAAATACTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* * *
20788 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTCAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
20853 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* *
20918 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGTTAAC-TATTTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
20982 --AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
391 AGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
* *
21045 CTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGTG
456 CTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
*
21100 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGGTAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* * *
21165 TGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAATTTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
* *
21230 TAAAAGGATGGGGGTATTAGTATTCATGGTATTCGCGATATTTTTCTAAAAATATTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* *
21295 CGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTAATGAAACCCCATTTTAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
* * *
21360 TTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGCTTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* *
21425 ATATTTTTATTTTCCGGAATATTATTTA-CCGATTTTTAAATGAAATTAAGATAACGAATTTCTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAG-TTTTTAAATGAAATTAAGATAACGAATTT-TT
* * * * ** *
21489 TTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTCACCCGGAACCCGATAAACTTAC
389 TT---A-GAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTAC
* *
21554 TCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGCGCAACATACTTTGGAAAATTTGCG
450 TCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAG-ACAACATACTTTGGAAAATTTGCG
21615 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
*
21680 TGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
* *
21745 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTAT-TAAAAATACTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* * *
21809 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTCAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
21874 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* * *
21939 ATATTTTTAATTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGTTAAC-TATTTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
22003 --AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
391 AGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
* *
22066 CTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGTG
456 CTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
*
22121 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGGTAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* * *
22186 TGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCCCGTGAAAGAATTTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
* *
22251 TAAAAGGATGGGGGTATTAGTATTCATGGTATTCGCGATATTTTTCTAAAAATATTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* *
22316 CGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTAATGAAA-CCCATTTTAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
* * *
22380 TTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGCTTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* *
22445 ATATTTTTATTTTCCGGAATATTATTTA-CCGATTTTTAAATGAAATTAAGATAACGAATTTCTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAG-TTTTTAAATGAAATTAAGATAACGAATTT-TT
* * * * ** *
22509 TTAAAAGGAAATGACTGGTAAGCCCGATAAACTCCTAGCATTCACCCGGAACCCGATAAACTTAC
389 TT---A-GAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTAC
*
22574 TCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGCACAACATACTTTGGAAAATTTGCG
450 TCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAG-ACAACATACTTTGGAAAATTTGCG
22635 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
*
22700 TGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
22765 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* * *
22830 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTCAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
22895 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* * *
22960 ATATTTTTAATTTCCAG-ATATTATTTATCAGTTTTTAAATGAAATTAAGCTAAC-TATTTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
* *
23023 -TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCAGTAACCCGATAAACTTACTCAAAA
391 AGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
* *
23087 CTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGTG
456 CTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
23142 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAG--AAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* * * * *
23205 TGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGTGATACTCCCGCGAAAGAATTTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
* * *
23270 TAAAAGGATGGGGGTATTAGAATTCATGGTATTCGCGATATTTTTCTAAAAATATTTTTATTTT-
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
*
23334 TCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTAATGAAACCCCATTTTAATTT
196 T-GAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTT
* * *
23399 ATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGCTTTCTCTAAA
260 ATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAA
* *
23464 AATATTTTTATTTTCCGGAATATTATTTA-CCGATTTTTAAATGAAATTAAGATAACGAATTTTT
325 AATATTTTTATTTTCCAGAATATTATTTATCAG-TTTTTAAATGAAATTAAGATAACGAATTTTT
* * * ** *
23528 TTAAAAGGAAATGACTGGTAAGCCCGA-TAACTCCTAGCATTCACCCGGAACCCGATAAACTTAC
389 TT---A-GAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTAC
*
23592 TCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGCACAACATACTTTGGAAAATTTGCG
450 TCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAG-ACAACATACTTTGGAAAATTTGCG
*
23653 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGTAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* *
23718 TGGTGGTCTGGAAAGGAAAAAAGAAAATATTGGGTGATACTCCCGTGGAAGAAATTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
23783 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
*
23848 CGAAATATTATATACCTATTTAGTTAATATTGTAACTTC-CTCAATGAAACCCCATTTTAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
* *
23912 TTTTACAATAAAATATTTATTTTAACC-AAAAATATTTAAAACCATAAAATTGCTTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* *
23976 ATATTTTTATTTTCC-GAATATTATTTA-CCGTTTTTAAATGAAATTAAGCTAACGAATTTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
* * *
24039 AAAAGGAAATGACT-GTAAGCCCGA-TAACTCCTAG-TTTC-CCGGAATAA--CGATAAACTTAC
391 ---A-GAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCG--TAACCCGATAAACTTAC
24098 TCAAAACTAGTAGACCTA-TTTT-GGGCGTTAC-AAGCACAACATACTTTGGAAAATTTGCG
450 TCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAG-ACAACATACTTTGGAAAATTTGCG
24157 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAA-T
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* *
24221 TGGTGGTCTGGAAAGGAAAAAAGAAAATATTGGGTGATACTCCCGTGGAAGAAATTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
24286 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATA--TTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* * *
24349 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAA-CCCATTTCAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
24413 TTTTTCAAT-AAA-ATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
*
24476 ATA-TTTTATTTTCCAGAATATTATTTATCAGTTTTT-AA--AAATT-A-ATAAGCTAATTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAA-CGAATTTTTT
24535 T--AAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAA
390 TAGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAA
* *
24598 ACTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGTG
455 ACTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
*
24654 ATTACAAGTAGGTTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGGTAAGCAGAAT
1 ATTACAAGTAGG-TTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAAT
24719 TTGGTGGTCTGGAAAGGAAAGAA-AAAATATTGGGCGATACTCCCGTGGAAG-AATT-TGTCAGC
65 TTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGC
*
24781 CTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGTGATATTTTTCTAAAAATATTTTTATTTT
130 CTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTT
* *
24845 CCGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTTAATGAAA-CCCATTTTAATTT
195 CTGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTT
* *
24909 A-TTTTAAAAAAAATATTT-TTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAA
260 ATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAA
24972 AATATTTTTATTTTCC-GAATATTATTTA-C-GATTTTTAAATGAAATTAAGATAACGAATTTTT
325 AATATTTTTATTTTCCAGAATATTATTTATCAG-TTTTTAAATGAAATTAAGATAACGAATTTTT
* * *
25034 TTAAAAGGAAATGACT-GTAAGCCCGA-TAACTCCTAG-CTTCACCCG-AACCCGATAAACTTAC
389 TT---A-GAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTAC
* *
25095 TCAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AAGCCAACATACTTTGGAAAATTTGCG
450 TCAAAACTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
25155 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
* *
25220 TGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCC
66 TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
25285 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
131 TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
* *
25350 TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTTAATTTA
196 TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
25415 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
261 TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
* * *
25480 ATATTTTTATTTTCCAGAATATTATTTATTAGTTTTTAAATGAAATTAAGCTAAC-TATTTTTTT
326 ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
*
25544 -TAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
391 AGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
* *
25608 CTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGTG
456 CTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
25663 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAG-TAAGCAGAATT
1 ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
*
25727 TGGTGGTCTGGAAAGGATAGAA
66 TGGTGGTCTGGAAAGGAAAGAA
Statistics
Matches: 4326, Mismatches: 233, Indels: 179
0.91 0.05 0.04
Matches are distributed among these distances:
491 7 0.00
492 9 0.00
493 13 0.00
494 4 0.00
495 76 0.02
496 36 0.01
497 193 0.04
498 100 0.02
499 51 0.01
500 140 0.03
501 143 0.03
502 59 0.01
503 152 0.04
504 219 0.05
505 308 0.07
506 658 0.15
507 566 0.13
508 131 0.03
509 72 0.02
510 19 0.00
511 192 0.04
512 74 0.02
513 179 0.04
514 561 0.13
515 364 0.08
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (510 bp):
ATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATT
TGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAGAAATTGTGTCAGCC
TAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTC
TGAAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTA
TTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAA
ATATTTTTATTTTCCAGAATATTATTTATCAGTTTTTAAATGAAATTAAGATAACGAATTTTTTT
AGAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAAACTTACTCAAAA
CTAGTAGACCTATTTTTCGGGCGTTACAAAGACAACATACTTTGGAAAATTTGCG
Done.