Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2564
Parameters: 2 7 7 80 10 50 1000
Length:  69127

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1235--1490
39
6.6
40
89
5
366
23
28
22
25
1.99
1235--1486
79
3.2
79
89
5
372
23
28
23
25
1.99
9267--9527
40
6.6
40
88
4
352
24
26
22
26
2.00
14327--14428
31
3.7
26
78
15
107
9
0
30
59
1.29
14336--14403
31
2.2
30
92
5
109
5
0
27
66
1.15
14555--14619
24
2.7
24
86
9
87
58
30
0
10
1.32
14559--14619
26
2.5
24
89
5
86
62
29
0
8
1.24
14542--14618
24
3.2
24
77
13
70
55
31
1
11
1.44
14559--14620
25
2.5
26
80
15
76
62
29
0
8
1.23
14583--14653
34
2.1
34
92
2
117
67
25
1
5
1.20
17238--17279
20
2.1
20
95
0
75
33
16
19
30
1.94
21472--21539
28
2.4
29
76
11
68
50
29
2
17
1.61
24098--24149
20
2.6
18
75
19
50
53
3
0
42
1.19
24280--24351
36
2.0
36
89
5
110
45
5
6
41
1.54
31630--31678
20
2.5
19
81
15
55
34
2
0
63
1.06
33964--34000
19
1.9
19
88
0
56
24
8
8
59
1.53
34530--34577
24
2.0
24
80
15
64
18
0
14
66
1.25
36399--36426
2
14.0
2
100
0
56
0
0
50
50
1.00
36589--36638
15
3.4
15
86
2
75
34
0
12
54
1.38
36578--36636
30
2.0
28
90
6
91
33
0
10
55
1.33
36935--37009
21
3.4
23
82
12
95
13
21
26
38
1.90
41142--41190
12
3.4
15
70
18
50
30
6
0
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47739--47876
6
22.7
6
68
16
79
71
0
26
1
0.94
47727--47888
38
4.4
38
85
9
237
72
0
25
1
0.92
47727--47912
70
2.5
74
86
7
245
73
0
25
1
0.94
47819--47901
38
2.4
32
77
18
78
73
1
25
0
0.90
47739--47912
5
33.0
5
66
22
56
72
0
25
1
0.96
49153--49770
133
4.6
133
92
0
950
29
20
22
27
1.98
50992--51041
15
3.4
16
76
18
54
28
6
2
64
1.28
57991--58067
24
3.2
24
78
8
70
27
2
7
62
1.36
58173--58202
14
2.1
14
93
0
51
40
0
10
50
1.36
58259--58336
11
7.3
11
75
17
58
37
1
2
58
1.20
58259--58336
25
3.2
23
80
18
79
37
1
2
58
1.20
58261--58337
39
2.0
39
87
9
115
36
1
2
59
1.19
58259--58337
23
3.3
23
76
21
83
36
1
2
59
1.19
58513--58565
3
17.0
3
77
14
54
30
5
1
62
1.29

Tables:   1

The End!