Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1478
Parameters: 2 7 7 80 10 50 1000
Length:  36271

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4575--4617
21
2.0
21
81
0
50
41
46
11
0
1.40
5319--5506
3
62.7
3
70
4
65
36
29
23
10
1.88
5319--5398
30
2.7
30
90
0
133
32
28
28
10
1.89
5330--5454
45
2.7
45
83
3
169
34
28
24
12
1.92
6859--6886
6
4.7
6
100
0
56
35
0
46
17
1.49
18150--18197
22
2.1
24
92
7
82
33
14
8
43
1.75
19219--19251
16
2.1
16
100
0
66
75
0
0
24
0.80
24221--24469
50
4.8
50
85
4
284
20
29
24
26
1.99
24220--24469
100
2.4
104
88
6
357
20
29
24
26
1.99
24564--24595
13
2.5
13
94
0
55
56
12
0
31
1.37
24807--24864
30
1.9
30
89
0
89
31
24
3
41
1.71
31806--32050
100
2.4
101
81
13
288
22
28
23
26
1.99
31807--32053
51
4.8
50
80
10
236
21
28
23
26
1.99
32148--32179
13
2.5
13
94
0
55
56
12
0
31
1.37
36194--36260
25
2.4
25
83
16
71
35
8
0
55
1.32
36196--36250
24
2.3
25
78
12
62
38
10
0
50
1.37

Tables:   1

The End!