Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3406
Parameters: 2 7 7 80 10 50 1000
Length:  40709

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83--126
14
3.2
13
81
12
52
6
31
0
61
1.22
84--146
25
2.3
26
81
13
74
7
36
0
55
1.29
84--146
28
2.4
28
82
12
71
7
36
0
55
1.29
7145--7251
27
4.0
27
79
2
117
30
17
21
29
1.96
7236--7556
27
11.9
27
72
11
117
39
17
9
33
1.82
7422--7549
55
2.3
55
77
9
134
42
18
9
28
1.81
7342--7548
82
2.5
80
77
8
193
41
15
9
33
1.79
7271--7557
27
10.6
27
76
8
179
39
17
9
33
1.82
7445--7579
27
5.0
27
81
8
87
37
16
12
33
1.86
7817--7937
41
3.0
41
88
0
197
22
22
28
27
1.99
10045--10075
16
2.0
16
93
6
55
80
0
0
19
0.71
10045--10075
5
6.0
5
92
7
53
80
0
0
19
0.71
12374--12452
39
2.0
39
100
0
158
48
6
20
25
1.73
16002--16176
40
4.4
40
91
0
287
22
18
29
29
1.98
24513--24727
40
5.4
40
95
0
376
21
19
28
29
1.98
25439--25496
21
2.8
21
75
15
57
37
13
17
31
1.89
25545--25616
25
2.9
25
93
0
117
27
26
23
22
1.99
28166--28290
62
2.0
62
90
0
196
32
19
15
33
1.92
32461--32519
30
2.0
29
84
15
77
59
6
13
20
1.57
33384--33461
38
2.1
38
90
0
120
17
30
0
51
1.46
34721--34767
19
2.5
19
76
10
51
72
4
2
21
1.12
35941--35997
28
2.0
28
100
0
114
29
10
24
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40141--40223
27
3.2
26
75
16
82
31
3
1
63
1.19
40157--40242
12
6.8
12
73
20
59
31
5
1
61
1.27
40473--40538
22
3.2
20
76
17
64
39
4
0
56
1.20

Tables:   1

The End!