genome.fa.s196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2904
Parameters: 2 7 7 80 10 50 1000
Length:  62946

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6521--6691	93	1.8	93	88	2	263	28	30	20	21	1.98
6516--6682	46	3.7	43	73	13	147	29	29	19	20	1.97
6518--6707	46	4.1	45	69	18	131	28	30	20	21	1.98
7111--7170	30	2.0	30	86	0	84	31	25	6	36	1.82
11188--11394	85	2.4	85	87	0	297	31	24	14	29	1.94
11283--11356	38	2.1	36	82	10	89	33	22	9	33	1.87
18384--18554	93	1.8	93	93	2	299	28	29	21	21	1.98
18381--18551	46	3.7	45	78	16	190	28	28	21	21	1.98
20197--20300	38	2.7	38	81	0	118	29	26	13	29	1.94
20565--20603	17	2.3	17	86	8	53	41	17	0	41	1.50
33712--33751	17	2.3	18	82	4	55	15	40	27	17	1.89
40206--40380	46	3.8	46	78	10	194	29	29	20	21	1.98
40214--40384	93	1.8	93	92	0	288	29	29	20	21	1.98
42766--42815	15	3.4	15	80	2	57	60	12	16	12	1.60
45734--45903	92	1.8	93	92	1	288	28	29	21	21	1.98
45726--45900	46	3.8	46	78	11	196	29	29	20	21	1.98
45731--45919	46	4.1	46	70	20	126	28	29	20	21	1.98
48824--48888	27	2.4	27	84	5	78	35	23	20	21	1.96
49030--49222	27	7.2	26	89	2	242	25	22	18	33	1.97
49029--49222	54	3.6	53	88	4	273	25	22	18	33	1.97
51176--51233	30	1.9	30	85	0	80	34	12	25	27	1.91
51553--51769	47	4.6	46	72	13	158	29	21	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51553--51865	94	3.4	94	80	8	277	28	21	28	22	1.99
53765--53892	28	4.6	27	85	6	139	28	12	25	32	1.92
53765--53892	57	2.3	56	87	5	186	28	12	25	32	1.92
61806--61904	28	3.5	29	89	5	132	28	13	27	31	1.94

Tables:   1

The End!