genome.fa.s1967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Length:  43222

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62--103	13	3.4	13	81	18	54	83	2	14	0	0.75
60--96	13	2.8	13	83	0	56	86	0	13	0	0.57
3114--3374	40	6.6	40	86	3	298	26	28	19	24	1.99
3114--3374	79	3.3	78	83	5	303	26	28	19	24	1.99
3114--3374	119	2.2	118	83	3	319	26	28	19	24	1.99
5471--5571	43	2.3	43	84	0	121	25	29	20	23	1.99
6721--6789	29	2.4	28	81	11	77	40	24	0	34	1.56
7451--7634	6	29.8	6	70	15	108	50	13	16	19	1.77
7469--7549	37	2.2	37	88	0	117	51	14	14	18	1.76
7469--7634	62	2.7	62	90	0	251	50	13	16	19	1.79
7477--7631	19	7.6	19	68	23	84	49	14	17	19	1.80
7505--7571	25	2.7	25	85	0	98	52	14	14	17	1.75
7502--7612	31	3.6	31	70	13	93	49	13	16	20	1.79
7567--7634	25	2.7	25	81	0	91	47	13	19	20	1.82
7852--7902	27	1.9	26	84	4	66	35	17	27	19	1.94
8147--8398	27	9.3	27	81	6	226	25	18	17	37	1.93
8148--8388	54	4.5	54	79	4	263	25	19	17	37	1.93
8177--8388	81	2.6	80	86	3	282	25	18	17	38	1.92
8380--8478	27	3.7	27	71	12	78	32	8	21	38	1.82
8380--8536	80	2.0	81	83	1	199	32	8	21	37	1.83
8433--8644	27	7.8	26	82	6	133	31	8	20	38	1.84
8434--8767	54	6.2	54	85	0	382	30	9	21	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8488--8767	27	10.4	27	86	0	380	31	8	21	38	1.84
11569--11620	18	3.0	16	76	17	59	5	30	0	63	1.18
12684--12741	26	2.2	27	81	12	75	36	27	10	25	1.89
12849--12909	28	2.2	28	90	0	95	16	21	24	37	1.93
12857--12928	28	2.6	27	82	6	81	20	22	18	38	1.93
19448--19498	18	2.8	18	82	8	68	3	33	0	62	1.13
20702--20780	28	2.9	28	80	1	97	20	25	18	35	1.95
22519--22549	7	4.4	7	100	0	62	29	0	54	16	1.42
27212--27281	30	2.3	30	85	0	86	14	31	35	18	1.91
29299--29352	27	2.0	27	96	0	99	14	9	3	72	1.24
32348--32532	40	4.7	40	79	7	173	23	21	28	26	1.99
40207--40388	39	4.7	40	82	8	198	24	21	28	25	1.99
40207--40386	79	2.3	78	82	6	204	24	22	27	25	2.00
40259--40420	78	2.1	77	82	6	193	25	20	27	25	1.99

Tables:   1

The End!