Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold532
Parameters: 2 7 7 80 10 50 1000
Length:  62656

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
946--1056
27
4.1
26
82
11
143
36
25
7
30
1.83
949--1056
55
2.0
54
85
8
148
37
25
7
29
1.83
5664--5834
93
1.8
93
96
0
315
28
28
21
21
1.99
5656--5831
46
3.8
46
79
12
216
28
28
21
21
1.98
12484--12592
26
4.2
26
97
0
209
31
6
26
35
1.82
16276--16337
27
2.2
29
77
11
67
50
3
3
43
1.34
16466--16538
10
7.1
10
69
17
51
61
0
4
34
1.15
16443--16507
18
3.8
18
70
24
50
61
0
4
33
1.16
26655--26690
17
2.1
17
89
0
54
38
0
0
61
0.96
27076--27113
20
2.0
19
90
10
60
68
2
13
15
1.32
27652--27923
151
1.8
150
93
3
474
29
8
6
56
1.54
34188--34226
12
3.2
12
89
10
53
0
0
17
82
0.68
35615--35660
21
2.2
21
100
0
92
50
19
0
30
1.48
36341--36858
87
6.0
86
82
5
442
31
12
11
44
1.78
36382--36852
84
5.5
83
81
6
343
30
13
10
45
1.78
36832--37005
77
2.2
78
79
7
183
29
13
12
44
1.81
37441--37530
40
2.2
40
90
3
137
31
25
20
23
1.98
37545--37645
40
2.5
40
80
0
112
32
19
20
26
1.97
37901--37951
14
3.6
14
76
5
50
19
0
31
49
1.49
37901--37952
21
2.5
21
84
6
61
21
0
30
48
1.51
38998--39059
22
2.8
22
82
0
79
66
6
0
27
1.16
39007--39059
15
3.6
14
74
5
52
66
7
0
26
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38998--39055
29
2.0
29
89
0
89
67
6
0
25
1.16
41661--41699
8
4.6
8
81
12
51
43
2
2
51
1.29
43655--43684
15
1.9
16
93
6
53
53
3
6
36
1.44
45274--45318
23
2.0
22
87
8
65
28
0
0
71
0.87
45279--45324
23
2.0
23
91
0
74
30
0
0
69
0.89
49221--49281
30
2.0
30
83
0
77
31
22
8
37
1.84
50939--50991
9
5.2
11
76
19
53
30
0
0
69
0.88
50947--51004
28
2.0
29
93
3
100
32
1
0
65
1.03
50939--50992
20
2.7
19
76
18
56
31
0
0
68
0.90
50948--50996
15
3.4
15
72
11
57
28
0
0
71
0.86
51040--51090
12
4.5
12
72
22
56
31
0
1
66
1.03
50948--51090
28
4.5
30
74
18
96
32
2
2
62
1.21
51117--51157
13
2.9
15
75
10
50
41
4
0
53
1.22
51124--51171
21
2.3
21
78
7
53
41
4
2
52
1.32
51706--51779
31
2.4
31
78
13
82
64
2
2
29
1.21
56419--56486
34
2.0
34
97
0
127
51
17
2
27
1.60
56508--56548
14
2.9
15
85
7
59
34
43
2
19
1.64
56547--56583
15
2.5
15
86
4
58
45
29
0
24
1.53
56540--56647
22
5.0
22
72
12
82
45
26
0
26
1.60
56745--56792
7
6.7
7
83
4
51
39
35
2
22
1.66
56798--56845
21
2.2
21
88
7
69
43
37
0
18
1.51
56823--56859
14
2.6
15
87
8
51
40
40
0
18
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56840--56874
15
2.4
15
90
4
54
45
34
0
20
1.51
56842--56925
22
3.9
21
73
6
69
46
29
1
22
1.60
59669--59744
22
3.3
22
64
10
62
28
10
31
28
1.90
59661--60006
47
7.4
47
91
1
552
32
8
31
28
1.86
59661--60006
93
3.7
94
94
2
606
32
8
31
28
1.86

Tables:   1

The End!