genome.fa.s1978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3434
Parameters: 2 7 7 80 10 50 1000
Length:  39111

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4037--4096	30	2.0	30	90	0	93	28	25	8	38	1.84
11575--11634	30	2.0	30	93	0	102	28	23	8	40	1.83
13916--14345	56	7.7	56	92	1	693	32	24	15	27	1.96
13950--14345	167	2.4	168	93	1	697	32	24	15	27	1.95
13916--14333	223	1.9	223	93	1	730	32	24	15	27	1.95
16991--17067	37	2.1	36	95	2	136	27	10	24	37	1.88
19784--19813	13	2.3	13	94	0	51	13	30	36	20	1.90
25017--25187	93	1.8	93	92	2	290	28	28	21	21	1.98
25010--25185	46	3.8	46	77	14	191	29	28	20	21	1.98
29166--29344	85	2.1	85	98	0	349	37	8	27	26	1.85
30624--30762	71	2.0	71	98	0	269	35	9	24	30	1.87
30671--30716	24	1.9	24	100	0	92	39	10	19	30	1.86
30675--30727	24	2.3	23	83	6	63	35	13	22	28	1.92
30695--31133	47	9.3	47	90	2	598	33	9	29	27	1.89
30611--30823	118	1.8	118	90	4	349	34	8	27	29	1.87
33561--33635	38	2.0	38	86	5	107	30	18	26	24	1.98
33692--34008	40	7.9	40	88	1	438	25	20	27	26	1.99
35264--35440	84	2.1	84	95	3	320	37	8	26	27	1.85
36714--36853	71	1.9	72	95	2	255	34	9	25	30	1.87
36784--37269	47	10.3	48	91	4	717	33	9	29	27	1.89
36784--37248	140	3.3	140	92	4	740	32	10	29	27	1.89
37120--37241	22	5.3	22	62	21	61	33	11	29	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36782--37269	187	2.6	187	87	5	732	32	9	29	27	1.89

Tables:   1

The End!