Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2719
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9917
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Found at i:787 original size:37 final size:36
Alignment explanation
Indices: 737--814 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
727 TTATTACGAA
* * * *
737 GTCTTACCGGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATC-G
*
774 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
810 GTCTT
1 GTCTT
815 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 6 0.17
37 30 0.83
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:1054 original size:47 final size:47
Alignment explanation
Indices: 932--1369 Score: 764
Period size: 47 Copynumber: 9.4 Consensus size: 47
922 GCCCTTCGGG
* *
932 CTTATCACATTTATACACTTT-AC-TCCATCCACA-CGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCAT-CACATCGGCCATTAGGC
977 CTT-TCACATATATACACTTTCAC--TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1068 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1164 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1260 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1307 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1353 CTTATCACATATATACA
1 CTTATCACATATATACA
1370 TCAATTCCAT
Statistics
Matches: 382, Mismatches: 2, Indels: 17
0.95 0.00 0.04
Matches are distributed among these distances:
43 4 0.01
44 34 0.09
45 25 0.07
46 19 0.05
47 206 0.54
49 94 0.25
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:1110 original size:96 final size:94
Alignment explanation
Indices: 932--1369 Score: 764
Period size: 96 Copynumber: 4.7 Consensus size: 94
922 GCCCTTCGGG
* *
932 CTTATCACATTTATACACTTT-AC-TCCATCCACA-CGGCCATTAGGCCTT-TCACATATATACA
1 CTTATCACATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCCTTATCACATATATACA
993 CTTTCAC--TCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
1021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1086 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
1117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1182 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
1211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1276 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
1307 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1370 TCAATTCCAT
Statistics
Matches: 337, Mismatches: 2, Indels: 16
0.95 0.01 0.05
Matches are distributed among these distances:
89 20 0.06
90 6 0.02
91 19 0.06
92 4 0.01
93 19 0.06
94 99 0.29
96 170 0.50
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:1236 original size:143 final size:143
Alignment explanation
Indices: 932--1367 Score: 791
Period size: 143 Copynumber: 3.1 Consensus size: 143
922 GCCCTTCGGG
*
932 CTTATCACAT-T-TATACACTTT-AC-TCCATCCACA-CGGCCATTAGGCCTT-TCACATATATA
1 CTTATCACATATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCCTTATCACATATATA
991 CACTTTCAC--TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1054 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
1068 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1133 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1198 TCGGCCATTAGGC
131 TCGGCCATTAGGC
1211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1276 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1341 TCGGCCATTA-GC
131 TCGGCCATTAGGC
1353 CTTATCACATATATA
1 CTTATCACATATATA
1368 CATCAATTCC
Statistics
Matches: 291, Mismatches: 1, Indels: 10
0.96 0.00 0.03
Matches are distributed among these distances:
136 10 0.03
137 1 0.00
138 10 0.03
139 6 0.02
140 19 0.07
141 20 0.07
142 17 0.06
143 208 0.71
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:5024 original size:40 final size:40
Alignment explanation
Indices: 4994--5413 Score: 617
Period size: 40 Copynumber: 10.8 Consensus size: 40
4984 AGCATGATTA
* * *
4994 CTCTTCGGGACCTAGCCCGGATATAACACCAG-ACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
5033 CTCTTC-GG-TTTAGCACGGATAT-T-ACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
5069 CTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
5108 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
5148 CTCTTC-GGACTTAG-CCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
5186 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
5226 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
5266 CTCTTCGGGACTTAGCCCGGATAT-TCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
5305 CTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
5344 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
5384 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
5414 CTCAATTCTC
Statistics
Matches: 355, Mismatches: 16, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
35 4 0.01
36 13 0.04
37 18 0.05
38 54 0.15
39 87 0.25
40 179 0.50
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:5177 original size:78 final size:78
Alignment explanation
Indices: 4994--5413 Score: 600
Period size: 78 Copynumber: 5.4 Consensus size: 78
4984 AGCATGATTA
* * * * * *
4994 CTCTTCGGGACCTAGCCCGGATATAACACCAG-ACGAATGCTCTTCG-G-TTTAGCACGGAT-AT
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAAT
*
5055 TACTAGCACGAATG
65 CACTAGCACGAATG
5069 CTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 CTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATA-A
5133 TCACTAGCACGAATG
64 TCACTAGCACGAATG
5148 CTCTTCGGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACAT
1 CTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATA-AT
5212 CACTAGCACGAATG
65 CACTAGCACGAATG
* *
5226 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATT
1 CTCTTCG-GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAAT
5291 CACTAGCACGAATG
65 CACTAGCACGAATG
* * * *
5305 CTCCTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATAT
1 CTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATA-AT
5370 CACTAGCACGAATG
65 CACTAGCACGAATG
* *
5384 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTC-GGACTTAGCCCGGATACATCACT
5414 CTCAATTCTC
Statistics
Matches: 322, Mismatches: 13, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
74 15 0.05
75 25 0.08
76 1 0.00
77 10 0.03
78 130 0.40
79 72 0.22
80 69 0.21
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (78 bp):
CTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAATC
ACTAGCACGAATG
Found at i:5229 original size:118 final size:118
Alignment explanation
Indices: 4994--5413 Score: 620
Period size: 118 Copynumber: 3.6 Consensus size: 118
4984 AGCATGATTA
* * * * * * *
4994 CTCTTCGGGACCTAGCCCGGATATAACACCAG-ACGAATGCTCTTC-GG-TTTAGCACGGAT-AT
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAT
*
5055 TACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATG
66 CACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATG
5108 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAG-CCGGATACA
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA-A
5171 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
65 TCACTAGCACGAATGCTCTTCG-GACTTAGCCCGGATACATCACTAGCACGAATG
*
5226 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATT
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAT
* *
5291 CACTAGCACGAATGCTCCTCGGACTTAGCCCGGATATATCACTAGCACGAATG
66 CACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATG
* * * *
5344 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA-A
5409 TCACT
65 TCACT
5414 CTCAATTCTC
Statistics
Matches: 281, Mismatches: 16, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
114 27 0.10
115 20 0.07
116 4 0.01
117 28 0.10
118 161 0.57
119 34 0.12
120 7 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (118 bp):
CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAT
CACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:6694 original size:36 final size:37
Alignment explanation
Indices: 6622--6699 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
6612 TTATTACGAA
* *
6622 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
6659 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
6695 GTCTT
1 GTCTT
6700 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:6896 original size:47 final size:47
Alignment explanation
Indices: 6818--7324 Score: 881
Period size: 47 Copynumber: 10.7 Consensus size: 47
6808 CCCTTCGGGA
* * * * * *
6818 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6865 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6912 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6959 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7100 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7149 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7290 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
7325 AGAATCCTAA
Statistics
Matches: 444, Mismatches: 13, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 396 0.89
49 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7192 original size:190 final size:190
Alignment explanation
Indices: 6818--7303 Score: 877
Period size: 190 Copynumber: 2.6 Consensus size: 190
6808 CCCTTCGGGA
* * * * * * * *
6818 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
6883 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
6946 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
7071 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
7136 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
7261 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
7304 GCATGTTCAC
Statistics
Matches: 287, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
188 94 0.33
190 193 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7364 original size:237 final size:235
Alignment explanation
Indices: 6873--7324 Score: 816
Period size: 237 Copynumber: 1.9 Consensus size: 235
6863 GCCCTGTCAC
6873 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
6938 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
7003 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
131 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* * * *
7068 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
196 CACTTTCACATCCATCACATCAG-CA-TAGGCCTAATCAAAT
7110 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
7175 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
7240 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATG
131 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
7305 CA-TGTTCACATCCATCACAT
196 CACT-TTCACATCCATCACAT
7325 AGAATCCTAA
Statistics
Matches: 211, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
236 1 0.00
237 210 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (235 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATCCATCACATCAGCATAGGCCTAATCAAAT
Done.