Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3513
Parameters: 2 7 7 80 10 50 1000
Length:  44865

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2636--2820
40
4.7
40
81
5
187
25
27
21
25
1.99
2638--2820
80
2.3
80
82
4
210
25
27
21
25
2.00
2752--2829
40
1.9
41
82
10
97
26
28
21
23
1.99
10108--10292
40
4.7
40
81
5
187
25
27
21
25
1.99
10110--10292
80
2.3
80
82
4
210
25
27
21
25
2.00
10224--10301
40
1.9
41
82
10
97
26
28
21
23
1.99
18505--18701
55
3.7
53
77
2
151
37
19
23
19
1.94
18502--18725
53
4.2
54
76
4
193
38
17
23
19
1.93
24716--24913
91
2.2
89
83
2
252
37
22
8
31
1.84
24923--24979
22
2.6
21
78
13
53
70
0
3
26
1.03
24947--24995
18
2.7
19
77
17
52
59
0
2
38
1.09
25134--25176
18
2.4
18
84
0
59
72
0
6
20
1.08
25273--25383
19
5.9
18
71
12
64
29
3
0
65
1.15
25282--25343
20
3.0
20
80
15
74
25
4
1
67
1.19
25282--25353
18
3.7
18
76
12
63
27
5
1
65
1.23
25256--25370
10
12.3
9
66
19
58
30
3
0
65
1.15
25355--25402
15
3.1
15
75
3
51
41
0
0
58
0.98
25458--25636
97
1.9
97
86
6
260
39
8
14
37
1.78
26617--26663
23
2.0
23
100
0
94
40
29
0
29
1.57
27854--27974
58
2.1
59
87
3
174
48
4
20
25
1.69
27886--28003
58
2.1
57
82
7
141
49
5
18
27
1.68
28934--28995
31
2.0
31
96
3
117
43
6
12
37
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30981--31124
40
3.6
40
87
0
191
24
27
23
25
2.00
36554--36724
46
3.7
46
76
13
188
29
27
20
22
1.99
36559--36729
93
1.8
93
92
0
288
29
28
20
22
1.98
37148--37207
30
2.0
30
87
6
86
31
25
6
36
1.82
41496--41670
45
3.8
46
79
13
216
29
29
20
20
1.98
41503--41673
93
1.8
92
96
1
315
28
29
21
21
1.98

Tables:   1

The End!