Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 100 of 295
Found at i:32158910 original size:9 final size:9
Alignment explanation
Indices: 32158896--32158952 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32158886 ATCTCGTGTG
32158896 CATATCATA
1 CATATCATA
*
32158905 CATATCATGTG
1 CATATCA--TA
32158916 CATATCATA
1 CATATCATA
* *
32158925 CATGTCATGTG
1 CATATCA--TA
32158936 CATATCATA
1 CATATCATA
32158945 CATATCAT
1 CATATCAT
32158953 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32158915 original size:20 final size:20
Alignment explanation
Indices: 32158892--32158954 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
32158882 GAACATCTCG
32158892 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
32158912 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
32158932 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32158952 TGT
1 TGT
32158955 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:32166854 original size:24 final size:24
Alignment explanation
Indices: 32166817--32166945 Score: 172
Period size: 24 Copynumber: 5.4 Consensus size: 24
32166807 CTGGAGGCCT
*
32166817 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTAGGGCATA
*
32166841 AGCTCTTTTTAATAACTAGGGCATA
1 AGC-CCTTTTAATAACTAGGGCATA
*
32166866 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
32166889 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
* *
32166913 AGCCCTTTTAATAACTTGGGTATA
1 AGCCCTTTTAATAACTAGGGCATA
*
32166937 AGCCATTTT
1 AGCCCTTTT
32166946 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
23 22 0.23
24 67 0.71
25 5 0.05
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:32166877 original size:47 final size:48
Alignment explanation
Indices: 32166817--32166945 Score: 190
Period size: 47 Copynumber: 2.7 Consensus size: 48
32166807 CTGGAGGCCT
*
32166817 AGCCTCTTTTAATAACTGGGGCA-AAGCTCTTTTTAATAACTAGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGC-CCTTTTAATAACTAGGGCATA
32166866 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
* * *
32166913 AGCCCTTTTAATAACTTGGGTATAAGCCATTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
32166946 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
47 41 0.55
48 29 0.39
49 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
Found at i:32166910 original size:71 final size:72
Alignment explanation
Indices: 32166803--32166940 Score: 192
Period size: 71 Copynumber: 1.9 Consensus size: 72
32166793 GCTTTATCAT
* * *
32166803 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCA-AAGCTCTTTTTAATAACTAGGGCATAA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCATAAGC-CCTTTTAATAACTAGGGCATAA
32166867 GCCCTTTA
65 GCCCTTTA
* *
32166875 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTTGGGTATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTAGGGCATAA
32166938 GCC
65 GCC
32166941 ATTTTGCACT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
71 43 0.73
72 16 0.27
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTAGGGCATAAG
CCCTTTA
Found at i:32167022 original size:20 final size:20
Alignment explanation
Indices: 32166999--32167041 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
32166989 GAACATCTCG
*
32166999 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
32167019 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32167039 TGT
1 TGT
32167042 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:32167106 original size:25 final size:25
Alignment explanation
Indices: 32167078--32167125 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
32167068 ATATATAAAC
* *
32167078 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
32167103 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
32167126 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:32168907 original size:37 final size:37
Alignment explanation
Indices: 32168860--32168931 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
32168850 TTAAGCTTGG
* *
32168860 ACTCTATTTATTTCTTGCATTTAGATTAGGATTTTGA
1 ACTCCATTTATTTCTTGCATTTAGATTAAGATTTTGA
32168897 ACTCCATTTATTTCTTGCATTTAGATTAAGATTTT
1 ACTCCATTTATTTCTTGCATTTAGATTAAGATTTT
32168932 AAATTATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.51
Consensus pattern (37 bp):
ACTCCATTTATTTCTTGCATTTAGATTAAGATTTTGA
Found at i:32177075 original size:12 final size:12
Alignment explanation
Indices: 32177058--32177082 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32177048 ATACACGGCT
32177058 TGGGACATGGTC
1 TGGGACATGGTC
32177070 TGGGACATGGTC
1 TGGGACATGGTC
32177082 T
1 T
32177083 TCATGGTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (12 bp):
TGGGACATGGTC
Found at i:32183371 original size:18 final size:18
Alignment explanation
Indices: 32183348--32183384 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
32183338 ATACAGTAAC
32183348 ATCAAAAAGATAGAATGT
1 ATCAAAAAGATAGAATGT
32183366 ATCAAAAAGATAGAATGT
1 ATCAAAAAGATAGAATGT
32183384 A
1 A
32183385 CCAGCAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.16, T:0.22
Consensus pattern (18 bp):
ATCAAAAAGATAGAATGT
Found at i:32185115 original size:23 final size:21
Alignment explanation
Indices: 32185074--32185113 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32185064 TCGAACATGG
32185074 TTGTGTGGCTACCCCACACGC
1 TTGTGTGGCTACCCCACACGC
*
32185095 TTGTGTGGCTACTCCACAC
1 TTGTGTGGCTACCCCACAC
32185114 ACTCGTGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.35, G:0.23, T:0.28
Consensus pattern (21 bp):
TTGTGTGGCTACCCCACACGC
Found at i:32185121 original size:21 final size:21
Alignment explanation
Indices: 32185076--32185121 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
32185066 GAACATGGTT
* *
32185076 GTGTGGCTACCCCACACGCTT
1 GTGTGGCTACCCCACACACTC
*
32185097 GTGTGGCTACTCCACACACTC
1 GTGTGGCTACCCCACACACTC
32185118 GTGT
1 GTGT
32185122 TCTCAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.35, G:0.24, T:0.26
Consensus pattern (21 bp):
GTGTGGCTACCCCACACACTC
Found at i:32190935 original size:42 final size:42
Alignment explanation
Indices: 32190848--32191020 Score: 125
Period size: 42 Copynumber: 4.1 Consensus size: 42
32190838 TAAGATGCCA
* * * * *
32190848 ATGCCATGTCCCAAATGTGGTCTTACA-TAGGATCTCA-AATCG
1 ATGCCATGTCCCAGATATGGTCTTACACGA-AAACTCATAA-CG
* ***
32190890 ATGCCATGTCCCAGATATGGTCTTATACGAAAACTCATTTTG
1 ATGCCATGTCCCAGATATGGTCTTACACGAAAACTCATAACG
* ** * * *
32190932 ATGCCATGTCCCAAACGTAGTCTTACACGAAATCTCATAACA
1 ATGCCATGTCCCAGATATGGTCTTACACGAAAACTCATAACG
* * * * * *
32190974 ACGCCATATCCCAGATATGGTCTTACATGATAACACATACCG
1 ATGCCATGTCCCAGATATGGTCTTACACGAAAACTCATAACG
32191016 ATGCC
1 ATGCC
32191021 GATGGCATAT
Statistics
Matches: 97, Mismatches: 32, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
42 96 0.99
43 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGATATGGTCTTACACGAAAACTCATAACG
Found at i:32191019 original size:84 final size:84
Alignment explanation
Indices: 32190848--32191020 Score: 188
Period size: 84 Copynumber: 2.1 Consensus size: 84
32190838 TAAGATGCCA
* * * * * * *
32190848 ATGCCATGTCCCAAATGTGGTCTTACATAGGATCTCAAATCGATGCCATGTCCCAGATATGGTCT
1 ATGCCATGTCCCAAACGTAGTCTTACAGAGAATCTCAAATCAACGCCATATCCCAGATATGGTCT
* * ***
32190913 TATACGAAAACTCATTTTG
66 TACACGAAAACACATACCG
32190932 ATGCCATGTCCCAAACGTAGTCTTACACGA-AATCTCATAA-CAACGCCATATCCCAGATATGGT
1 ATGCCATGTCCCAAACGTAGTCTTACA-GAGAATCTCA-AATCAACGCCATATCCCAGATATGGT
* *
32190995 CTTACATGATAACACATACCG
64 CTTACACGAAAACACATACCG
32191016 ATGCC
1 ATGCC
32191021 GATGGCATAT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
84 70 0.96
85 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (84 bp):
ATGCCATGTCCCAAACGTAGTCTTACAGAGAATCTCAAATCAACGCCATATCCCAGATATGGTCT
TACACGAAAACACATACCG
Found at i:32195391 original size:88 final size:88
Alignment explanation
Indices: 32195242--32195417 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
32195232 ATTCTTTGAT
32195242 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
1 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
32195307 AAATTCTCCAGTTTTGACATCAG
66 AAATTCTCCAGTTTTGACATCAG
32195330 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
1 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
32195395 AAATTCTCCAGTTTTGACATCAG
66 AAATTCTCCAGTTTTGACATCAG
32195418 CTTTCTTTTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (88 bp):
TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
AAATTCTCCAGTTTTGACATCAG
Found at i:32197266 original size:40 final size:39
Alignment explanation
Indices: 32197216--32197328 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
32197206 TCCAGTTACT
*
32197216 AGCACAAAGCCTGCGGGACTTTAGGCCCGGATATA-GTACC
1 AGCACAAAGCCTGCGGGA-TTTA-ACCCGGATATATGTACC
* * * *
32197256 AGCACTAAGCCTGCGAGATTTAACCTGGATATATTTTACC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATA-TGTACC
* *
32197296 AGCACGAAGCCTGCGGGATTTAACCCAGATATA
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATA
32197329 CAATATATCG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 9 0.15
39 4 0.06
40 49 0.79
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (39 bp):
AGCACAAAGCCTGCGGGATTTAACCCGGATATATGTACC
Found at i:32217447 original size:42 final size:42
Alignment explanation
Indices: 32217400--32217514 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 42
32217390 GGGATCTCAC
* *
32217400 ATCGATGTCATATCCCAGATATGGTCTTATACGAAATATCAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGAAATATCAT
* * * * * *
32217442 TTCGATGCCATGTGCTAGACGA-GGTCTTACACGAAATCTCAT
1 ATCGATGCCATATCCCAGA-TATGGTCTTACACGAAATATCAT
* *
32217484 ATCAACGCCATATCCCAGATATGGTCTTACA
1 ATCGATGCCATATCCCAGATATGGTCTTACA
32217515 TGATAACACT
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
41 1 0.02
42 54 0.96
43 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATCGATGCCATATCCCAGATATGGTCTTACACGAAATATCAT
Found at i:32222783 original size:46 final size:47
Alignment explanation
Indices: 32222730--32222995 Score: 185
Period size: 47 Copynumber: 5.7 Consensus size: 47
32222720 ATTGTTGGCT
*
32222730 AGTGTAAGACATGTCCGGGACATGCATCGGCCACATTATGA-G-AA-CC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GACGAAAGCC
*
32222776 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGACGAAAGCC
* * * *
32222824 AGTGTAAGACATGTCTAGGACATGTATCGG-CC-TCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCAT-TAGACGAAAGCC
* * * * * * *
32222870 AGTGTAAGACATGTCTGGGACATGCAT-TGACTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGACGAAAGCC
* * * **
32222916 AGTGTAAGACCATGTCTAGGACATGGCATC-G-AC-TTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGACGAAAGCC
*
32222963 AGTGTAAGACCATGCCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
32222996 ACCTTACCCA
Statistics
Matches: 180, Mismatches: 24, Indels: 29
0.77 0.10 0.12
Matches are distributed among these distances:
45 7 0.04
46 71 0.39
47 79 0.44
48 23 0.13
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGACGAAAGCC
Found at i:32222936 original size:93 final size:93
Alignment explanation
Indices: 32222774--32222993 Score: 268
Period size: 93 Copynumber: 2.3 Consensus size: 93
32222764 ATTATGAGAA
*
32222774 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAAAGCTAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACAT-GCATCGACATTGAGACGAAAGCTAGTGTAAGACATGTC
* *
32222839 TAGGACAT-GTATCGGCCTCGAGACGTAAG
65 TAGGACATGGCATC-GACTCGAGACGTAAG
* * *
32222868 CCAGTGTAAGA-CATGTCTGGGACATGCATTGAC-TATGAGATGATAG-TCAGTGTAAGACCATG
1 CCAGTGTAAGACCATGTCTGGGACATGCATCGACAT-TGAGACGAAAGCT-AGTGTAAGA-CATG
* * *
32222930 TCTAGGACATGGCATCGACTTGAGATGTGAG
63 TCTAGGACATGGCATCGACTCGAGACGTAAG
*
32222961 CCAGTGTAAGACCATGCCTGGGACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACAT-GCATCG
32222994 GCACCTTACC
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 50 0.46
94 28 0.26
95 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
CCAGTGTAAGACCATGTCTGGGACATGCATCGACATTGAGACGAAAGCTAGTGTAAGACATGTCT
AGGACATGGCATCGACTCGAGACGTAAG
Found at i:32225782 original size:36 final size:35
Alignment explanation
Indices: 32225740--32225878 Score: 97
Period size: 36 Copynumber: 3.9 Consensus size: 35
32225730 TTGTGCCTAT
* * *
32225740 GCTGGTTAGTTAAACTGACAATGTTTTGTGCCCAGC
1 GCTGGTTAGATAAACCGACAAT-TGTTGTGCCCAGC
*
32225776 GCTGGTTGGATAAACCGACAATTGTTGTGCCCTA-C
1 GCTGGTTAGATAAACCGACAATTGTTGTGCCC-AGC
* * * * *
32225811 ACT-GATCGAATAAACCTACAA-TGTTTTGCACCCAGC
1 GCTGGTTAG-ATAAACCGACAATTGTTGTG--CCCAGC
* *
32225847 GCTGGTT-GAATAAACTGACAATAGTTGTGCCC
1 GCTGGTTAG-ATAAACCGACAATTGTTGTGCCC
32225879 TTCAATGGTT
Statistics
Matches: 81, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
34 9 0.11
35 27 0.33
36 38 0.47
37 7 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (35 bp):
GCTGGTTAGATAAACCGACAATTGTTGTGCCCAGC
Found at i:32232140 original size:11 final size:11
Alignment explanation
Indices: 32232126--32232166 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
32232116 TGTTTTCTCC
32232126 CTATTTTGCTA
1 CTATTTTGCTA
*
32232137 CTATTTTACTA
1 CTATTTTGCTA
* *
32232148 TTATATTGCTA
1 CTATTTTGCTA
32232159 CTATTTTG
1 CTATTTTG
32232167 TTGTTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:32232410 original size:12 final size:12
Alignment explanation
Indices: 32232387--32232420 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
32232377 TATATATTTT
32232387 AAAATT-ATATA
1 AAAATTAATATA
32232398 AAAATTAATATA
1 AAAATTAATATA
32232410 AAAATTAATAT
1 AAAATTAATAT
32232421 GGGCGAGCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:32235875 original size:2 final size:2
Alignment explanation
Indices: 32235868--32235908 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
32235858 TCATAATTTA
32235868 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
32235909 AGGAAGCTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32236192 original size:21 final size:21
Alignment explanation
Indices: 32236139--32236192 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
32236129 TATTTTAATA
*
32236139 TTAATTTAATAAATATATATAT
1 TTAATTTAA-AAATATATAAAT
**
32236161 TTAATCGAAAAAGT-TATAAAT
1 TTAATTTAAAAA-TATATAAAT
32236182 TTAATTTAAAA
1 TTAATTTAAAA
32236193 TATTTTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (21 bp):
TTAATTTAAAAATATATAAAT
Found at i:32236210 original size:32 final size:31
Alignment explanation
Indices: 32236168--32236229 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
32236158 TATTTAATCG
*
32236168 AAAAAGTTATAAAT-TTAATTTAAAATATTTTT
1 AAAAAATTATAAATATT-A-TTAAAATATTTTT
*
32236200 AAAAAATTATAAATATTATTATAATATTTT
1 AAAAAATTATAAATATTATTAAAATATTTT
32236230 ATTTTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 11 0.41
32 14 0.52
33 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (31 bp):
AAAAAATTATAAATATTATTAAAATATTTTT
Found at i:32238220 original size:22 final size:22
Alignment explanation
Indices: 32238192--32238237 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
32238182 TTCATGTTTA
*
32238192 AACCATTACCTTTTACTTTGGC
1 AACCATTACCTTTTACTCTGGC
*
32238214 AACCATTATCTTTTACTCTGGC
1 AACCATTACCTTTTACTCTGGC
32238236 AA
1 AA
32238238 GAATGATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.39
Consensus pattern (22 bp):
AACCATTACCTTTTACTCTGGC
Found at i:32240823 original size:25 final size:26
Alignment explanation
Indices: 32240721--32240827 Score: 80
Period size: 25 Copynumber: 4.3 Consensus size: 26
32240711 CAGCTCGAGA
* * **
32240721 GAGCTTACCG-TTATTTAGCTCACAT
1 GAGCATACCGATTACTTAGCTCGTAT
* *
32240746 GAGCTTACCG-TTACTCAGCTCGTAT
1 GAGCATACCGATTACTTAGCTCGTAT
* * * * *
32240771 GAGCTTACTGATTAC--AACTTGTAA
1 GAGCATACCGATTACTTAGCTCGTAT
32240795 GAGCATACCGATT-CTTAGCTCGTAT
1 GAGCATACCGATTACTTAGCTCGTAT
32240820 GAGCATAC
1 GAGCATAC
32240828 ATGTACAGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.02
24 17 0.26
25 44 0.67
26 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GAGCATACCGATTACTTAGCTCGTAT
Found at i:32251675 original size:20 final size:20
Alignment explanation
Indices: 32251650--32251702 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
32251640 ATGAGTGGGA
32251650 CACACGGGCGTGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
*
32251670 CACACGGGCGGGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
32251690 CACACGGGCGTGT
1 CACACGGGCGTGT
32251703 GCTTTGCCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.34, G:0.34, T:0.13
Consensus pattern (20 bp):
CACACGGGCGTGTCCCTAAG
Found at i:32261925 original size:16 final size:16
Alignment explanation
Indices: 32261903--32261953 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
32261893 TTGTAACGCC
32261903 CCAAAAATCCCAAAATT
1 CCAAAAATCCCAAAA-T
* *
32261920 CAAAAAATCCTAAAAT
1 CCAAAAATCCCAAAAT
**
32261936 CCCGAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
32261952 CC
1 CC
32261954 TGAATTTTCT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.51, C:0.31, G:0.02, T:0.16
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:32263215 original size:8 final size:8
Alignment explanation
Indices: 32263202--32263248 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
32263192 ATCGGCAAAC
32263202 GCCGAAAT
1 GCCGAAAT
*
32263210 GCCGAAAA
1 GCCGAAAT
32263218 GCCGAAAT
1 GCCGAAAT
*
32263226 GCCGAAAA
1 GCCGAAAT
**
32263234 ATCGAAAT
1 GCCGAAAT
32263242 GCCGAAA
1 GCCGAAA
32263249 AGCTGAAAGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (8 bp):
GCCGAAAT
Found at i:32263223 original size:16 final size:16
Alignment explanation
Indices: 32263202--32263256 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
32263192 ATCGGCAAAC
32263202 GCCGAAATGCCGAAAA
1 GCCGAAATGCCGAAAA
32263218 GCCGAAATGCCGAAAA
1 GCCGAAATGCCGAAAA
**
32263234 ATCGAAATGCCGAAAA
1 GCCGAAATGCCGAAAA
*
32263250 GCTGAAA
1 GCCGAAA
32263257 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.45, C:0.22, G:0.24, T:0.09
Consensus pattern (16 bp):
GCCGAAATGCCGAAAA
Found at i:32263517 original size:29 final size:29
Alignment explanation
Indices: 32263482--32263555 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
32263472 AATGTGACTA
* *
32263482 GGCCTAACGAGCTATACAAATGTGATTTG
1 GGCCTAATGAGCTATACAAAGGTGATTTG
* * * *
32263511 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGAGCTATACAAAGGTGATTTG
*
32263540 GGCCTAATGCGCTATA
1 GGCCTAATGAGCTATA
32263556 TGAATATGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (29 bp):
GGCCTAATGAGCTATACAAAGGTGATTTG
Found at i:32263554 original size:58 final size:57
Alignment explanation
Indices: 32263482--32263590 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 57
32263472 AATGTGACTA
* *
32263482 GGCCTAACGAGCTATACAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGAGCTATACAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATTTG
* * ** * *
32263540 GGCCTAATGCGCTATATGAATATGATTGGGCTTAATGGGCCAGATGCAGGT
1 GGCCTAACGAGCTATACAAATATGATTGGGCCTAATGGGCCAGATACAGGT
32263591 ATGTGAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 23 0.53
58 20 0.47
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (57 bp):
GGCCTAACGAGCTATACAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATTTG
Found at i:32263565 original size:29 final size:29
Alignment explanation
Indices: 32263504--32263581 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
32263494 TATACAAATG
* *
32263504 TGATTTGGGCCTAATGGGCCATATACAGG
1 TGATTTGGGCCTAATGCGCCATATACAGA
* *
32263533 TGATTTGGGCCTAATGCGCTATATGA-ATA
1 TGATTTGGGCCTAATGCGCCATAT-ACAGA
* *
32263562 TGA-TTGGGCTTAATGGGCCA
1 TGATTTGGGCCTAATGCGCCA
32263582 GATGCAGGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 14 0.34
29 26 0.63
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (29 bp):
TGATTTGGGCCTAATGCGCCATATACAGA
Found at i:32268429 original size:23 final size:24
Alignment explanation
Indices: 32268390--32268457 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 24
32268380 GCTCCTCCTA
*
32268390 AGCTGATGGACAGTAAGCTCT-ATTG
1 AGCTGA-GAACAGTAAGCTCTGA-TG
*
32268415 AGCTGA-AACAGTAAGCCCTGATG
1 AGCTGAGAACAGTAAGCTCTGATG
*
32268438 AGTTGAGAACAGTAAGCTCT
1 AGCTGAGAACAGTAAGCTCT
32268458 TACAAGCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 18 0.49
24 13 0.35
25 6 0.16
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (24 bp):
AGCTGAGAACAGTAAGCTCTGATG
Found at i:32278931 original size:29 final size:29
Alignment explanation
Indices: 32278864--32278976 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
32278854 AAGTCTACAT
* *
32278864 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
32278892 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** * * *
32278921 ACATTTGTATGGCCTATAAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
32278950 ACATTCATATGGACCATTAGACCCAAA
1 ACATTCATATGGCCCATTAGGCCCAAA
32278977 GGAAATTCAT
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 21 0.31
29 47 0.69
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:32283019 original size:47 final size:47
Alignment explanation
Indices: 32282938--32283253 Score: 519
Period size: 47 Copynumber: 6.7 Consensus size: 47
32282928 TTAGGATTCT
*
32282938 ATGTGATGGATGTGAACA-TG-ATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
32282984 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32283031 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32283078 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32283125 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
32283172 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
32283219 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32283254 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 12, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
45 1 0.00
46 17 0.07
47 238 0.93
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32283427 original size:37 final size:37
Alignment explanation
Indices: 32283371--32283449 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32283361 CCGAGCTCTA
* *
32283371 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32283408 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32283445 AAGAC
1 AAGAC
32283450 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32285384 original size:29 final size:29
Alignment explanation
Indices: 32285349--32285422 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32285339 GTTGTGAGAT
* *
32285349 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32285378 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32285407 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32285423 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32285809 original size:40 final size:40
Alignment explanation
Indices: 32285765--32285849 Score: 136
Period size: 39 Copynumber: 2.1 Consensus size: 40
32285755 CTAAGTGACC
*
32285765 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGT
1 ATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGAATAT
*
32285805 ATCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTGAATAT
1 ATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGAATAT
32285845 ATCCG
1 ATCCG
32285850 TGCTAAACCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 21 0.50
40 21 0.50
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGAATAT
Found at i:32285823 original size:39 final size:41
Alignment explanation
Indices: 32285765--32285869 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 41
32285755 CTAAGTGACC
* *
32285765 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAATAT
32285805 ATCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTGAATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAATAT
* **
32285845 ATCCGTGCTAAACCTCCGAAGAGCA
1 ATCCGGGCT-AAGTTCCGAAGAGCA
32285870 ATCATGCTGG
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
39 21 0.37
40 24 0.42
41 3 0.05
42 9 0.16
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAATAT
Found at i:32285855 original size:40 final size:40
Alignment explanation
Indices: 32285732--32285869 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
32285722 AATGATGTCC
* * **
32285732 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGA-CCATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCT-AGTGATATATCCG
* *
32285770 GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
32285810 GGCTAAGTT-CGAAGAGCATTCGTGCTAGTGAATATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATATATCCG
* **
32285850 TGCTAAACCTCCGAAGAGCA
1 GGCT-AAGTTCCGAAGAGCA
32285870 ATCATGCTGG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
38 13 0.15
39 28 0.33
40 31 0.37
41 3 0.04
42 9 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
Found at i:32296247 original size:40 final size:40
Alignment explanation
Indices: 32296192--32296343 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
32296182 ATAACCACAA
* *
32296192 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32296232 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
32296272 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
32296312 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
32296344 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:32296320 original size:80 final size:80
Alignment explanation
Indices: 32296192--32296343 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
32296182 ATAACCACAA
* * * * *
32296192 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
32296257 CGGATATATCAACTC
66 CGGATATATCAACTC
* * * *
32296272 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-AAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
32296336 CCGGATAT
65 CCGGATAT
32296344 CATTCAAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 59 0.95
81 3 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
CGGATATATCAACTC
Found at i:32302293 original size:28 final size:28
Alignment explanation
Indices: 32302262--32302347 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 28
32302252 TTAGATTATA
32302262 AATAATTTCATTTTGGGCATTTTGCTGT
1 AATAATTTCATTTTGGGCATTTTGCTGT
* * *
32302290 AATAA-TGCCTTTAT-GG-ATTTT--TAT
1 AATAATTTCATTT-TGGGCATTTTGCTGT
32302314 AAATAATTTCATTTTGGGCATTTTGCTGT
1 -AATAATTTCATTTTGGGCATTTTGCTGT
32302343 AATAA
1 AATAA
32302348 GGCCTTTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
24 2 0.04
25 6 0.13
26 12 0.27
27 12 0.27
28 11 0.24
29 2 0.04
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (28 bp):
AATAATTTCATTTTGGGCATTTTGCTGT
Found at i:32302332 original size:53 final size:53
Alignment explanation
Indices: 32302257--32302365 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
32302247 CTGATTTAGA
*
32302257 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAATGCCTTTATGGATTT
1 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
32302310 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
1 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
32302363 TTA
1 TTA
32302366 CTTTAATTTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.49
Consensus pattern (53 bp):
TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
Found at i:32307578 original size:32 final size:33
Alignment explanation
Indices: 32307532--32307595 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
32307522 AACAGCGGGT
32307532 ACTGGGCCGAAG-CCCTTTTTAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTTAGATA-ACAGTAA
**
32307564 ACTGGGCCTTAGCCCCTTTTTAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTTAGATAACAGTA
32307596 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTTAGATAACAGTAA
Found at i:32309023 original size:5 final size:5
Alignment explanation
Indices: 32309013--32309049 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
32309003 GTAGATGAAG
32309013 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
32309050 AACTGAATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:32309031 original size:15 final size:16
Alignment explanation
Indices: 32308986--32309049 Score: 78
Period size: 15 Copynumber: 4.0 Consensus size: 16
32308976 GGCTATGGGG
32308986 GAAAAGAAGAAGAGAAA
1 GAAAAGAAGAAGA-AAA
* *
32309003 GTAGATGAAG-AGAAAA
1 G-AAAAGAAGAAGAAAA
32309019 GAAAAGAA-AAGAAAA
1 GAAAAGAAGAAGAAAA
32309034 GAAAAGAAGAAGAAAA
1 GAAAAGAAGAAGAAAA
32309050 AACTGAATCC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
15 19 0.47
16 11 0.28
17 4 0.10
18 6 0.15
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (16 bp):
GAAAAGAAGAAGAAAA
Found at i:32324473 original size:28 final size:28
Alignment explanation
Indices: 32324431--32324634 Score: 318
Period size: 28 Copynumber: 7.3 Consensus size: 28
32324421 CGGGAAGTAG
32324431 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
32324459 TTGGGTCTGACGGGCCATATAAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
32324487 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32324515 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
32324543 TTGGGCCTGATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32324571 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
32324599 TTGGGCCTGATAGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32324627 TTGGGCCT
1 TTGGGCCT
32324635 AAAGGGGTCA
Statistics
Matches: 160, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 160 1.00
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:32324981 original size:27 final size:27
Alignment explanation
Indices: 32324951--32325369 Score: 471
Period size: 27 Copynumber: 15.6 Consensus size: 27
32324941 TAATAAAGAG
32324951 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32324978 AAATTA-TCGAAATATCCCT-GATTTGTA
1 AAATTACT-GAAATA-CCCTCAATTTGTA
* * *
32325005 AAATTACCGAAATACCCTTAA-TTGTG
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32325031 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * *
32325058 AAATTACTGAAATACCCTCGATTTTTG
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32325085 AAATTATTGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32325112 AAATTA-TCGAAACACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCAATTTGTA
* *
32325139 AAATTACTGAAACACCCTCAATTTTTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32325166 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32325193 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32325220 AAATTA-TCGAAATACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCAATTTGTA
32325247 AAATTACT-AATATACCCTCAATTTGTA
1 AAATTACTGAA-ATACCCTCAATTTGTA
* *
32325274 AAATTACTAAAATACCCTCAATTTTTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32325301 AAATTACTGAAACACCC-CTAATTTGTA
1 AAATTACTGAAATACCCTC-AATTTGTA
** *
32325328 AAATTA-TCG-AATACCCT-TGTAGTGTA
1 AAATTACT-GAAATACCCTCAAT-TTGTA
32325354 AAATTACTGAAATACC
1 AAATTACTGAAATACC
32325370 TTGTAGTGTA
Statistics
Matches: 340, Mismatches: 35, Indels: 34
0.83 0.09 0.08
Matches are distributed among these distances:
25 1 0.00
26 49 0.14
27 282 0.83
28 8 0.02
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:32325395 original size:27 final size:26
Alignment explanation
Indices: 32325324--32325411 Score: 106
Period size: 26 Copynumber: 3.3 Consensus size: 26
32325314 ACCCCTAATT
*
32325324 TGTAAAATTATCGAATACCCTTGTAG
1 TGTAAAATTACCGAATACCCTTGTAG
*
32325350 TGTAAAATTACTGAAATA-CCTTGTAG
1 TGTAAAATTACCG-AATACCCTTGTAG
*
32325376 TGTAAAATTGACCGACATACCCCTGTAG
1 TGTAAAATT-ACCGA-ATACCCTTGTAG
*
32325404 GGTAAAAT
1 TGTAAAAT
32325412 GACTATTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 29 0.55
27 10 0.19
28 14 0.26
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (26 bp):
TGTAAAATTACCGAATACCCTTGTAG
Found at i:32333139 original size:17 final size:17
Alignment explanation
Indices: 32333119--32333151 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32333109 GGAAAATACC
*
32333119 AAAAAA-AACAAAAAAT
1 AAAAAATAAAAAAAAAT
32333135 AAAAAATAAAAAAAAAT
1 AAAAAATAAAAAAAAAT
32333152 GAGAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAAAATAAAAAAAAAT
Found at i:32334833 original size:287 final size:287
Alignment explanation
Indices: 32334314--32334892 Score: 1095
Period size: 287 Copynumber: 2.0 Consensus size: 287
32334304 TTCGAATCCC
32334314 ATGGCAAGCAAGGAGCATTTATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACT
1 ATGGCAAGCAAGGAGCATTTATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACT
*
32334379 CTGATGTTAGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGCGAAGCTGGCTTTAAAT
66 CTGATGTTAGAGGGATCCCACATCGAGAAGCTAACATAAGAGTGGATGCGAAGCTGGCTTTAAAT
32334444 AGAGGGAACCATGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCATTGTATGGCGTGCT
131 AGAGGGAACCATGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCATTGTATGGCGTGCT
** *
32334509 CGTTTGGGTTGGGCGTCGGCTAAGAGTTTTTGGAGCGTGGATTAACTCCAGTCTCCTATCAGGTG
196 CGTTTGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCTATCAGGTG
32334574 TGTATTTCTCACTACTCTAGCTGTAGG
261 TGTATTTCTCACTACTCTAGCTGTAGG
32334601 ATGGCAAGCAAGGAGCATTTATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACT
1 ATGGCAAGCAAGGAGCATTTATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACT
*
32334666 CTGATGTTGGAGGGATCCCACATCGAGAAGCTAACATAAGAGTGGATGCGAAGCTGGCTTTAAAT
66 CTGATGTTAGAGGGATCCCACATCGAGAAGCTAACATAAGAGTGGATGCGAAGCTGGCTTTAAAT
*
32334731 AGAGGGAACCATGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCGTTGTATGGCGTGCT
131 AGAGGGAACCATGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCATTGTATGGCGTGCT
32334796 CGTTTGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCTATCAGGTG
196 CGTTTGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCTATCAGGTG
*
32334861 TGTATTTCTCGCTACTCTAGCTGTAGG
261 TGTATTTCTCACTACTCTAGCTGTAGG
32334888 ATGGC
1 ATGGC
32334893 TACTTTGGGC
Statistics
Matches: 285, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 285 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (287 bp):
ATGGCAAGCAAGGAGCATTTATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACT
CTGATGTTAGAGGGATCCCACATCGAGAAGCTAACATAAGAGTGGATGCGAAGCTGGCTTTAAAT
AGAGGGAACCATGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCATTGTATGGCGTGCT
CGTTTGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCTATCAGGTG
TGTATTTCTCACTACTCTAGCTGTAGG
Found at i:32335198 original size:27 final size:27
Alignment explanation
Indices: 32335163--32335254 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
32335153 ATTACCAAAG
* *
32335163 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
** *
32335190 TACTGTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
32335217 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
32335244 GACCCTCGATT
1 TACCCTCGATT
32335255 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:32335342 original size:80 final size:80
Alignment explanation
Indices: 32335258--32335411 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
32335248 CTCGATTGTG
* * *
32335258 AAATTACTAAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCC-CTAGTTTGTAAAATTACC
1 AAATTACCAAAATACCACTGGTAGG-TGA-AATTACCAAAATACCCTC-AATTTGTAAAATTACC
32335320 AAAATACCCCTAGTTTGA
63 AAAATACCCCTAGTTTGA
* ** *
32335338 AAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
32335403 ATACCCCTA
66 ATACCCCTA
32335412 ATTTACAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 59 0.92
81 5 0.08
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (80 bp):
AAATTACCAAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTTGA
Found at i:32335362 original size:53 final size:53
Alignment explanation
Indices: 32335253--32335407 Score: 179
Period size: 53 Copynumber: 2.9 Consensus size: 53
32335243 TGACCCTCGA
* ** *
32335253 TTGTGAAATTACTAAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGA-A-AATTACCAAAATACCACTAGT
* * *
32335307 TTGTAAAATTACCAAAATACCCCTAGTTTGAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAATACCACTAGT
* *
32335360 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCAAAATACCCCT-AGTTTG-AAAATTACCAAAATACC
32335408 CCTAATTTAC
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
52 4 0.05
53 40 0.46
54 39 0.45
55 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAATACCACTAGT
Found at i:32335423 original size:27 final size:27
Alignment explanation
Indices: 32335253--32335411 Score: 180
Period size: 27 Copynumber: 5.9 Consensus size: 27
32335243 TGACCCTCGA
* *
32335253 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
32335279 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
32335307 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
32335334 TTG-AAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
32335360 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
32335387 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
32335412 ATTTACAAAA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 27 0.24
27 77 0.69
28 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:32335486 original size:27 final size:27
Alignment explanation
Indices: 32335447--32335498 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
32335437 TGACTTTCTA
32335447 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
32335474 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
32335499 GTATATTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:32336517 original size:25 final size:25
Alignment explanation
Indices: 32336424--32336518 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
32336414 GAGGAAGTGC
*
32336424 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
32336448 AAAAGGGCTTTGCCCCAGGTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
32336473 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
32336499 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32336519 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
24 17 0.26
25 26 0.40
26 22 0.34
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:32336531 original size:24 final size:23
Alignment explanation
Indices: 32336424--32336545 Score: 109
Period size: 25 Copynumber: 5.0 Consensus size: 23
32336414 GAGGAAGTGC
* *
32336424 AAAAGGGCTATGCCCCAGTTACCG
1 AAAAGGGCTTTGCCCCAGTTA-TG
*
32336448 AAAAGGGCTTTGCCCCAGGTTACCG
1 AAAAGGGCTTTGCCCCA-GTTA-TG
*
32336473 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAG-TTAT-G
*
32336499 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATG
**
32336522 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
32336546 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
23 5 0.06
24 27 0.31
25 34 0.40
26 20 0.23
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATG
Found at i:32336774 original size:31 final size:31
Alignment explanation
Indices: 32336739--32336817 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
32336729 CATTTACAGT
32336739 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
32336770 AAAGGCTTCGGTCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
32336801 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
32336818 AACCGTTGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:32339146 original size:27 final size:27
Alignment explanation
Indices: 32339116--32339207 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
32339106 ATTACTAAAG
* *
32339116 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
32339143 TACCCTCGATTTATAAAATTGCCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
32339170 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
32339197 TACCCTCGATT
1 TACCCTCGATT
32339208 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:32339149 original size:54 final size:53
Alignment explanation
Indices: 32339091--32339221 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 53
32339081 TATTGAAATG
* * *
32339091 CCCTCGACTTGTAAAATTACTAAAGTACCCTC-GATTTATAGAATTATCGTTTTA
1 CCCTCGA-TTGTAAAATTACTAAAGTACCCTCAG-TTTACAAAATTACCGTTTTA
* * * ***
32339145 CCCTCGATTTATAAAATTGCCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTGTAAAATTACTAAAGTACCCTCAGTTTACAAAATTACCGTTTTA
*
32339199 CCCTCGATTGTGAAATTACTAAA
1 CCCTCGATTGTAAAATTACTAAA
32339222 ATACTCCTGT
Statistics
Matches: 60, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
53 10 0.17
54 49 0.82
55 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (53 bp):
CCCTCGATTGTAAAATTACTAAAGTACCCTCAGTTTACAAAATTACCGTTTTA
Found at i:32339269 original size:27 final size:27
Alignment explanation
Indices: 32339239--32339362 Score: 101
Period size: 27 Copynumber: 4.6 Consensus size: 27
32339229 TGTAGGATAG
32339239 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * * *
32339266 AATTGTCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
32339293 AATTACCGAAAT-GCCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
32339320 AATTACCAAAATACCCCT-GATT-TACA
1 AATTACCAAAATACCCCTAGTTTGTA-A
*
32339346 ATATTACAAAAATACCC
1 A-ATTACCAAAATACCC
32339363 TTGACTTTCT
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
25 2 0.03
26 7 0.09
27 62 0.83
28 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:32340422 original size:26 final size:25
Alignment explanation
Indices: 32340353--32340447 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
32340343 GAGGAAGTGC
*
32340353 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
32340377 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
32340402 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
32340428 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32340448 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.25
25 26 0.41
26 22 0.34
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:32340460 original size:24 final size:23
Alignment explanation
Indices: 32340353--32340474 Score: 100
Period size: 25 Copynumber: 5.0 Consensus size: 23
32340343 GAGGAAGTGC
* *
32340353 AAAAGGGCTATGCCCCAGTTACCG
1 AAAAGGGCTTTGCCCCAGTTA-TG
* *
32340377 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-TG
*
32340402 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAG-TTAT-G
*
32340428 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATG
**
32340451 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
32340475 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
23 5 0.06
24 27 0.32
25 32 0.38
26 21 0.25
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATG
Found at i:32340705 original size:31 final size:31
Alignment explanation
Indices: 32340667--32340741 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
32340657 CGTTTACAGT
32340667 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
32340698 AATGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
32340729 AAAGGCTTTGGCC
1 AAAGGCTTCGGCC
32340742 AGTAACTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:32342169 original size:44 final size:45
Alignment explanation
Indices: 32342086--32342186 Score: 107
Period size: 45 Copynumber: 2.3 Consensus size: 45
32342076 TCAAAGACAA
* *
32342086 TATGGCATCAGGATAAAATCAATAAGACCATAGCTAAAAA-ATGC
1 TATGGCATCATGATAAAATCAATAAGACCATAGCAAAAAAGATGC
* * * *
32342130 TATGGCATCATGATGGAAATGAGTAAGACCAT-GGAAAAAAGATGC
1 TATGGCATCATGAT-AAAATCAATAAGACCATAGCAAAAAAGATGC
* *
32342175 CATGGAATCATG
1 TATGGCATCATG
32342187 GTAATTAGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 19 0.40
45 28 0.60
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.21
Consensus pattern (45 bp):
TATGGCATCATGATAAAATCAATAAGACCATAGCAAAAAAGATGC
Found at i:32342355 original size:27 final size:27
Alignment explanation
Indices: 32342325--32342436 Score: 108
Period size: 27 Copynumber: 4.1 Consensus size: 27
32342315 ACCGAGATAT
32342325 TAAACATGAAGAAGTCTACTGGGACAC
1 TAAACATGAAGAAGTCTACTGGGACAC
*
32342352 TAAACAT-AAGGTAGTTCGTCAC---GACAC
1 TAAACATGAA-GAAG-TC-T-ACTGGGACAC
* *
32342379 TAAACACGAAGAAGCCTACTGGGACAC
1 TAAACATGAAGAAGTCTACTGGGACAC
*
32342406 TAAACATG-AGAAAGTCCACTGGGACAC
1 TAAACATGAAG-AAGTCTACTGGGACAC
32342433 TAAA
1 TAAA
32342437 ACACAGAGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
24 2 0.03
25 1 0.01
26 5 0.07
27 54 0.78
28 4 0.06
29 1 0.01
30 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
TAAACATGAAGAAGTCTACTGGGACAC
Found at i:32345057 original size:27 final size:27
Alignment explanation
Indices: 32345028--32345172 Score: 173
Period size: 27 Copynumber: 5.4 Consensus size: 27
32345018 CCCCAAAATA
* * *
32345028 GGTAAAATAACCGTAATGCCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
** * *
32345055 GGTAAAATGATAGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
32345082 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
32345109 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
32345136 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
32345163 GGTAAAATGA
1 GGTAAAATGA
32345173 TGATTATGCC
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:32345113 original size:54 final size:53
Alignment explanation
Indices: 32345028--32345187 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 53
32345018 CCCCAAAATA
* * *
32345028 GGTAAAATAACCGTAATGCCCCTATAAGGTAAAATGATAGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGAT-GTAATGCCCTTATAG
* * *
32345082 GGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGA-TGTAATGCCCTTATAG
* *
32345136 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGATGATTATGCCCTTAT
1 GGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATG-TAATGCCCTTAT
32345188 GTTCCGTATG
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 2 0.02
54 91 0.97
55 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (53 bp):
GGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATGTAATGCCCTTATAG
Found at i:32345533 original size:28 final size:28
Alignment explanation
Indices: 32345497--32345590 Score: 116
Period size: 28 Copynumber: 3.4 Consensus size: 28
32345487 ATTACACTGT
* * *
32345497 ACTGATACTGTATTGGGCTTAGGCCCAC
1 ACTGTTACTGTATAGGGCTTAGGCCCAG
* *
32345525 ACTGTTACTATATAGGGCTTAAGCCCAG
1 ACTGTTACTGTATAGGGCTTAGGCCCAG
* *
32345553 ACTATTACTGTATAGGGCTCAGGCCCAG
1 ACTGTTACTGTATAGGGCTTAGGCCCAG
*
32345581 ATTGTTACTG
1 ACTGTTACTG
32345591 CATGCACTGT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTTAGGCCCAG
Found at i:32350030 original size:41 final size:41
Alignment explanation
Indices: 32349985--32350067 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
32349975 TGTCTTGACT
32349985 GACTATTAATGTATTGAAATGGTGCAAAATGTTGTGTTTTA
1 GACTATTAATGTATTGAAATGGTGCAAAATGTTGTGTTTTA
32350026 GACTATTAATGTATTGAAATGGTGCAAAATGTTGTGTTTTA
1 GACTATTAATGTATTGAAATGGTGCAAAATGTTGTGTTTTA
32350067 G
1 G
32350068 GTATGCATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (41 bp):
GACTATTAATGTATTGAAATGGTGCAAAATGTTGTGTTTTA
Found at i:32350234 original size:72 final size:72
Alignment explanation
Indices: 32350117--32350261 Score: 236
Period size: 72 Copynumber: 2.0 Consensus size: 72
32350107 CCTATTTTCA
* * *
32350117 TACCACACGGTTGAGCACATAGACATGTCGCTCGATTATGTGTGACACATGGCCTTGGTACACGG
1 TACCACACGGTTGAACACACAGACATGTCGCTCGACTATGTGTGACACATGGCCTTGGTACACGG
32350182 CCGTGTG
66 CCGTGTG
* * *
32350189 TACCACACGGTTGAACACACGGACATGTGGCTCGACTATGTGTGACACATGGCCTTGGTACATGG
1 TACCACACGGTTGAACACACAGACATGTCGCTCGACTATGTGTGACACATGGCCTTGGTACACGG
32350254 CCGTGTG
66 CCGTGTG
32350261 T
1 T
32350262 CCCCTGTATA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (72 bp):
TACCACACGGTTGAACACACAGACATGTCGCTCGACTATGTGTGACACATGGCCTTGGTACACGG
CCGTGTG
Found at i:32354395 original size:7 final size:7
Alignment explanation
Indices: 32354380--32354417 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
32354370 ACCTCATTTG
32354380 ATCCCTC
1 ATCCCTC
*
32354387 ATCCATC
1 ATCCCTC
*
32354394 ATCCATC
1 ATCCCTC
32354401 ATCCCTC
1 ATCCCTC
32354408 ATCCCTC
1 ATCCCTC
32354415 ATC
1 ATC
32354418 ATTCTCTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (7 bp):
ATCCCTC
Found at i:32361034 original size:145 final size:145
Alignment explanation
Indices: 32360743--32361034 Score: 480
Period size: 145 Copynumber: 2.0 Consensus size: 145
32360733 GTACTTGGGC
*
32360743 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAACAAAAATTAAAGTGAA
1 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAACAAAAATAAAAGTGAA
* * *
32360808 AAATAAAAATTTTAAAATTCAATAGAAAATTTCTTCTCAAAGATTACATTAAATTAGTGCCCAGG
66 AAATAAAAATTTTAAAATTCAATAGAAAATTTCTTCTAAAAGATTACATCAAATTAATGCCCAGG
*
32360873 AAAGGTTGGAGGGGT
131 AAAGGTTGGAGAGGT
* *
32360888 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAATAGAAATAAAAGTGAA
1 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAACAAAAATAAAAGTGAA
*
32360953 AAATAAAAATTTTAAACTT-AATCAGAAAATTTCTTCTTAAAAGATTACATCAAATTAATGCCCA
66 AAATAAAAATTTTAAAATTCAAT-AGAAAATTTCTTC-TAAAAGATTACATCAAATTAATGCCCA
32361017 GGAAAGGTTGGA-AGGT
129 GGAAAGGTTGGAGAGGT
32361033 CA
1 CA
32361035 CAATGGTTCC
Statistics
Matches: 137, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
144 3 0.02
145 98 0.72
146 36 0.26
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.28
Consensus pattern (145 bp):
CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAACAAAAATAAAAGTGAA
AAATAAAAATTTTAAAATTCAATAGAAAATTTCTTCTAAAAGATTACATCAAATTAATGCCCAGG
AAAGGTTGGAGAGGT
Found at i:32361957 original size:24 final size:24
Alignment explanation
Indices: 32361930--32361978 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
32361920 AGAATTTCAT
*
32361930 GATTACCTTAGCATAATTTGTTGG
1 GATTACCTCAGCATAATTTGTTGG
*
32361954 GATTACCTCAGCATCATTTGTTGG
1 GATTACCTCAGCATAATTTGTTGG
32361978 G
1 G
32361979 TACACCTCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.39
Consensus pattern (24 bp):
GATTACCTCAGCATAATTTGTTGG
Found at i:32361985 original size:24 final size:24
Alignment explanation
Indices: 32361934--32361989 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
32361924 TTTCATGATT
* *
32361934 ACCTTAGCATAATTTGTTGGGATT
1 ACCTCAGCATAATTTGTTGGGATC
*
32361958 ACCTCAGCATCATTTGTTGGG-TAC
1 ACCTCAGCATAATTTGTTGGGAT-C
32361982 ACCTCAGC
1 ACCTCAGC
32361990 TTCAACCCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 1 0.04
24 27 0.96
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (24 bp):
ACCTCAGCATAATTTGTTGGGATC
Found at i:32372585 original size:19 final size:19
Alignment explanation
Indices: 32372561--32372601 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
32372551 TAGGATTGGA
32372561 TCCTACCTGGTGCACAGCT
1 TCCTACCTGGTGCACAGCT
32372580 TCCTACCTGGTGCACAGCT
1 TCCTACCTGGTGCACAGCT
32372599 TCC
1 TCC
32372602 ATTCACTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.39, G:0.20, T:0.27
Consensus pattern (19 bp):
TCCTACCTGGTGCACAGCT
Found at i:32373881 original size:25 final size:25
Alignment explanation
Indices: 32373850--32373917 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
32373840 AGCTGTAAAT
* *
32373850 GGTAAGCTCCTCCGAGCTGAA-TAGC
1 GGTAAGCTCATACGAGCT-AAGTAGC
*
32373875 GGTAAGCTCATACGAGCTAAGTATC
1 GGTAAGCTCATACGAGCTAAGTAGC
*
32373900 GGTAAGCTCATAAGAGCT
1 GGTAAGCTCATACGAGCT
32373918 GAAATCAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (25 bp):
GGTAAGCTCATACGAGCTAAGTAGC
Found at i:32376182 original size:20 final size:20
Alignment explanation
Indices: 32376142--32376182 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
32376132 CACCTTAAGG
32376142 ATTAATTTGGTAGAGTCTGT
1 ATTAATTTGGTAGAGTCTGT
32376162 ATTAAGTTTGGTAGAGT-TGT
1 ATTAA-TTTGGTAGAGTCTGT
32376182 A
1 A
32376183 AACACTGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (20 bp):
ATTAATTTGGTAGAGTCTGT
Found at i:32377854 original size:43 final size:42
Alignment explanation
Indices: 32377765--32377873 Score: 155
Period size: 43 Copynumber: 2.6 Consensus size: 42
32377755 TAAGATTACG
32377765 TGTAAGACCATATCTGGGATATGGAATCAATACGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGAATCAATACGAGACTTCA
* * * * *
32377807 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGGAATCAATACGAGACTTCA
*
32377850 TGTAAGACCATATCTGGGACATGG
1 TGTAAGACCATATCTGGGATATGG
32377874 CATTGGTATG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 22 0.38
43 36 0.62
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGAATCAATACGAGACTTCA
Found at i:32384640 original size:46 final size:46
Alignment explanation
Indices: 32384590--32384700 Score: 168
Period size: 46 Copynumber: 2.4 Consensus size: 46
32384580 TTTCTGTATG
*
32384590 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCTTACATA
1 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
* *
32384636 TGTTGCAAACTCGAGAATACAGGAATAGGTTCTGAGCTCCTGCATA
1 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
* * *
32384682 TGCTACAGACTTGAGAATA
1 TGTTGCAGACTCGAGAATA
32384701 TATGAATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (46 bp):
TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
Found at i:32388410 original size:46 final size:46
Alignment explanation
Indices: 32388358--32388631 Score: 397
Period size: 46 Copynumber: 6.0 Consensus size: 46
32388348 AGTGTGCTCT
*
32388358 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
32388404 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
32388450 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
32388496 CTTATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
32388542 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
32388588 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
32388632 TCGTGTCAAA
Statistics
Matches: 209, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 208 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:32391072 original size:10 final size:10
Alignment explanation
Indices: 32391059--32391106 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
32391049 TTGTTTTCAT
32391059 TTATCTTTAA
1 TTATCTTTAA
32391069 TTATCTTTAA
1 TTATCTTTAA
*
32391079 TTATCTTTAT
1 TTATCTTTAA
* * *
32391089 TTATGTGTAT
1 TTATCTTTAA
32391099 TTATCTTT
1 TTATCTTT
32391107 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:32391426 original size:35 final size:35
Alignment explanation
Indices: 32391380--32391450 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
32391370 TCTCAAAGAA
*
32391380 TATTCATTGTTTCTTTGCATTACGGGGCTAATACT
1 TATTCATTGTTTCTTCGCATTACGGGGCTAATACT
*
32391415 TATTCATTGTTTCTTCGTATTACGGGGCTAATACT
1 TATTCATTGTTTCTTCGCATTACGGGGCTAATACT
32391450 T
1 T
32391451 TCGTCTATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (35 bp):
TATTCATTGTTTCTTCGCATTACGGGGCTAATACT
Found at i:32396829 original size:5 final size:5
Alignment explanation
Indices: 32396810--32396889 Score: 103
Period size: 5 Copynumber: 16.0 Consensus size: 5
32396800 AGGCAACTCA
32396810 ATTTT -TTTT ATTTTT ATTTT ATTTT ATTTT A-TTT ATTTTT ATTTT ATTTT
1 ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT A-TTTT ATTTT ATTTT
*
32396860 ATTTT ATTTT ATTTT -TTATT TTTTT ATTTT
1 ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT
32396890 TAGATGTTGA
Statistics
Matches: 68, Mismatches: 1, Indels: 12
0.84 0.01 0.15
Matches are distributed among these distances:
4 10 0.15
5 47 0.69
6 11 0.16
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
ATTTT
Found at i:32396844 original size:25 final size:25
Alignment explanation
Indices: 32396810--32396889 Score: 119
Period size: 25 Copynumber: 3.2 Consensus size: 25
32396800 AGGCAACTCA
*
32396810 ATTTTTTTTATTTTTATTTTATTTT
1 ATTTTATTTATTTTTATTTTATTTT
32396835 ATTTTATTTATTTTTATTTTATTTT
1 ATTTTATTTATTTTTATTTTATTTT
32396860 ATTTTATTTTATTTTT-TATTT-TTTT
1 ATTTTA-TTTATTTTTAT-TTTATTTT
32396885 ATTTT
1 ATTTT
32396890 TAGATGTTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 40 0.77
26 12 0.23
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (25 bp):
ATTTTATTTATTTTTATTTTATTTT
Found at i:32396890 original size:15 final size:16
Alignment explanation
Indices: 32396810--32396890 Score: 87
Period size: 16 Copynumber: 4.9 Consensus size: 16
32396800 AGGCAACTCA
32396810 ATTTTTTTTA-TTTTT
1 ATTTTTTTTATTTTTT
32396825 ATTTTATTTTATTTTATTT
1 ATTTT-TTTTA-TTT-TTT
*
32396844 ATTTTTATTT-TATTTT
1 ATTTTT-TTTATTTTTT
32396860 ATTTTATTTTATTTTTT
1 ATTTT-TTTTATTTTTT
32396877 A-TTTTTTTATTTTT
1 ATTTTTTTTATTTTT
32396891 AGATGTTGAT
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
15 15 0.26
16 19 0.33
17 9 0.16
18 3 0.05
19 11 0.19
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
ATTTTTTTTATTTTTT
Found at i:32397098 original size:75 final size:75
Alignment explanation
Indices: 32396971--32397130 Score: 223
Period size: 75 Copynumber: 2.1 Consensus size: 75
32396961 GAAAAAAATA
* * *
32396971 CAGCCAAACAGCCTTTATTCCATTCCTATTTTAGCCCAGAATAGTGCTTTCCTGCCCTAGACTCC
1 CAGCCAAACAGCCTTTATTCCATTCCTATTCTAGCCCAGAATAGTGCATTCCTACCCTAGACTCC
32397036 CCAAAACCTG
66 CCAAAACCTG
* *** *
32397046 CAGCCAAATAGCCTTTATTCCA-TCCATATTCTAGCTTGGAATAGTGCATTCCTACTCTAGACTC
1 CAGCCAAACAGCCTTTATTCCATTCC-TATTCTAGCCCAGAATAGTGCATTCCTACCCTAGACTC
32397110 CCCAAAACCTG
65 CCCAAAACCTG
*
32397121 CAACCAAACA
1 CAGCCAAACA
32397131 CCCCCTTTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 3 0.04
75 71 0.96
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (75 bp):
CAGCCAAACAGCCTTTATTCCATTCCTATTCTAGCCCAGAATAGTGCATTCCTACCCTAGACTCC
CCAAAACCTG
Found at i:32400359 original size:10 final size:10
Alignment explanation
Indices: 32400344--32400393 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
32400334 TAATTTTAGG
32400344 ATTTAT-TTT
1 ATTTATCTTT
32400353 CATTTATCTTT
1 -ATTTATCTTT
*
32400364 AATTATCTTT
1 ATTTATCTTT
32400374 ATTTAT-TTGT
1 ATTTATCTT-T
32400384 ATTTATCTTT
1 ATTTATCTTT
32400394 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:32406884 original size:94 final size:95
Alignment explanation
Indices: 32406626--32406896 Score: 266
Period size: 94 Copynumber: 2.8 Consensus size: 95
32406616 TCCATCAAGT
* * * * * * *
32406626 CGATGCCATGACCCAGACATGGTCTTACATTAACT-ATCAAAATCGAGGCCGACGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCA-CATAATAGTGGCCGATG-CATGTCCCA
* * *
32406690 GACATGGTCTTACACTAGCTCTCACATGTCTATAA
63 GACAT-GTCTTACACTAGCACT-ACATCTCAATAA
* * * * *
32406725 CGATACCATGTCCCAGACATGGTCTTACACTG-ACACAT-CTAGTAGCCGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCACATAATAGTGGCCGATGCATGTCCCAGAC
* *
32406788 ATGTCTTACACTAGCACT-CGTCTCAAT-G
66 ATGTCTTACACTAGCACTACATCTCAATAA
* *
32406816 CAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTGGCCAATGCATGTCCCAG
1 C-GATGCCATGTCCCAGACATGGTCTTACACT-GCTCACATAATAGTGGCCGATGCATGTCCCAG
32406880 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
32406897 TCACACAAGT
Statistics
Matches: 143, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
91 1 0.01
92 35 0.24
93 1 0.01
94 53 0.37
95 14 0.10
96 8 0.06
97 2 0.01
98 1 0.01
99 28 0.20
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCACATAATAGTGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTACATCTCAATAA
Found at i:32408140 original size:20 final size:19
Alignment explanation
Indices: 32408115--32408162 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
32408105 ACAGTTTGTA
32408115 CCCCTGTTAGCACTTCGGTG
1 CCCCTGTTA-CACTTCGGTG
*
32408135 CCCCTGTATACACTTTGGTG
1 CCCCTGT-TACACTTCGGTG
*
32408155 TCCCTGTT
1 CCCCTGTT
32408163 TGCTCGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.88
21 2 0.08
ACGTcount: A:0.10, C:0.33, G:0.21, T:0.35
Consensus pattern (19 bp):
CCCCTGTTACACTTCGGTG
Found at i:32410108 original size:46 final size:47
Alignment explanation
Indices: 32409991--32410115 Score: 139
Period size: 48 Copynumber: 2.7 Consensus size: 47
32409981 TCGCCTCAAT
*
32409991 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCAGG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCT-AGA
* * *
32410039 GCCGATGCATTTCCCAGACATGTCTTACACTGGCTCT-CATA-CT-GTA
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TAAATATCTAG-A
** *
32410085 GCTTATGCATGTCCCAAACATGTCTTGCACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
32410116 AGCACACAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
45 1 0.02
46 26 0.39
47 2 0.03
48 36 0.55
49 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCTAGA
Found at i:32411622 original size:13 final size:13
Alignment explanation
Indices: 32411604--32411639 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
32411594 GGTGCAGGGT
*
32411604 CACACGGCCAAGC
1 CACACGCCCAAGC
32411617 CACACGCCCAAGC
1 CACACGCCCAAGC
*
32411630 CATACGCCCA
1 CACACGCCCA
32411640 TGTGCCAGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.50, G:0.17, T:0.03
Consensus pattern (13 bp):
CACACGCCCAAGC
Found at i:32412966 original size:26 final size:26
Alignment explanation
Indices: 32412937--32412998 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 26
32412927 ATCCTCTCTC
32412937 GAGCCATATAA-CAAGAAACTCACAAA
1 GAGCCAT-TAATCAAGAAACTCACAAA
*
32412963 GAGCCATTAATCAGGAAACTCACAAA
1 GAGCCATTAATCAAGAAACTCACAAA
32412989 GAGCCTATTA
1 GAGCC-ATTA
32412999 GGAAGCTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 3 0.09
26 26 0.79
27 4 0.12
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.16
Consensus pattern (26 bp):
GAGCCATTAATCAAGAAACTCACAAA
Found at i:32413912 original size:21 final size:21
Alignment explanation
Indices: 32413888--32413929 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32413878 AAGTTGTTTA
32413888 TCTATCAACAACCTTTTATTT
1 TCTATCAACAACCTTTTATTT
32413909 TCTATCAACAACCTTTTATTT
1 TCTATCAACAACCTTTTATTT
32413930 ATGATAAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (21 bp):
TCTATCAACAACCTTTTATTT
Found at i:32429561 original size:13 final size:12
Alignment explanation
Indices: 32429526--32429565 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
32429516 TTTTAGCAAG
32429526 TTTTTATTTTAGT
1 TTTTTATTTTA-T
*
32429539 CTTTTATTTTAT
1 TTTTTATTTTAT
32429551 TTTTTATTTT-T
1 TTTTTATTTTAT
32429562 TTTT
1 TTTT
32429566 ACTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 5 0.20
12 10 0.40
13 10 0.40
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:32431494 original size:25 final size:24
Alignment explanation
Indices: 32431441--32431494 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
32431431 AATCATCTTA
* *
32431441 TTTTTTAAATTTGCTTTATTTCTT
1 TTTTTTAAATTTGCTTTAGTTATT
*
32431465 CTTTTTAGAATTT-CTTTTAGTTATT
1 TTTTTTA-AATTTGC-TTTAGTTATT
32431490 TTTTT
1 TTTTT
32431495 CAATAAAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.70
Consensus pattern (24 bp):
TTTTTTAAATTTGCTTTAGTTATT
Found at i:32437097 original size:65 final size:66
Alignment explanation
Indices: 32437018--32437148 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
32437008 CAAAAGTATA
* *
32437018 CTAAAATTAGAAATAC-AAAAAAACCCAATATCATCATTTTTACCTTTTTTCATCCTTTAATTTT
1 CTAAAATTAAAAATACAAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTT
32437082 G
66 G
32437083 CTAAAATTAAAAATACAAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTT
1 CTAAAATTAAAAATACAAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTT
32437148 G
66 G
32437149 ATATTCTAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
65 15 0.24
66 48 0.76
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.39
Consensus pattern (66 bp):
CTAAAATTAAAAATACAAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTT
G
Found at i:32443260 original size:27 final size:27
Alignment explanation
Indices: 32443223--32443427 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
32443213 TAAATTGTAC
32443223 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
32443250 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32443277 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32443303 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32443331 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32443359 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
32443386 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
32443413 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32443428 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32447246 original size:27 final size:26
Alignment explanation
Indices: 32447188--32447280 Score: 98
Period size: 26 Copynumber: 3.5 Consensus size: 26
32447178 GATGATTAGC
* * *
32447188 GCACTAAGTGTGCG-ATTCGCTATGTT
1 GCACTAAGTGTGCGAAAT-GATATGAT
32447214 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATG-ATATGAT
* * **
32447241 GCACTAAGTGTGCGAATTGACATGCG
1 GCACTAAGTGTGCGAAATGATATGAT
32447267 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32447281 GGTCTACTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 33 0.57
27 25 0.43
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGATATGAT
Found at i:32447301 original size:80 final size:79
Alignment explanation
Indices: 32447188--32447340 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 79
32447178 GATGATTAGC
* * * *
32447188 GCACTAAGTGTGCGATTCGCTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGT
1 GCACTAAGTGTGCGAGTCACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTGT
32447252 GCGAATTGACATGCG
65 GCGAATTGACATGCG
* ** *
32447267 GCACTAAGTGTGCGGGTCTACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGT
1 GCACTAAGTGTGCGAGTC-ACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
*
32447332 GCGAGTTGA
65 GCGAATTGA
32447341 TGTTATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (79 bp):
GCACTAAGTGTGCGAGTCACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTG
CGAATTGACATGCG
Found at i:32447341 original size:27 final size:27
Alignment explanation
Indices: 32447188--32447340 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
32447178 GATGATTAGC
*
32447188 GCACTAAGTGTGCG-ATTCG-CTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32447214 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
*
32447241 GCACTAAGTGTGCGAATTGAC-ATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
32447267 GCACTAAGTGTGCGGGTCT-ACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
32447294 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32447321 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32447341 TGTTATAGCA
Statistics
Matches: 105, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
26 36 0.34
27 68 0.65
28 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32447351 original size:27 final size:26
Alignment explanation
Indices: 32447214--32447361 Score: 79
Period size: 27 Copynumber: 5.5 Consensus size: 26
32447204 TCGCTATGTT
** *
32447214 GCACTAAGTGTGCGAAATGAATA-TGA
1 GCACTAAGTGTGCGAGTTGATTACT-A
* * * *
32447240 TGCACTAAGTGTGCGAATTGACATGC-G
1 -GCACTAAGTGTGCGAGTTGA-TTACTA
* * *
32447267 GCACTAAGTGTGCGGGTCT-ACTATGTA
1 GCACTAAGTGTGCGAGT-TGATTA-CTA
* *
32447294 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTAC-TA
32447321 GCACTAAGTGTGCGAGTTGATGTTA-TA
1 GCACTAAGTGTGCGAGTTGA--TTACTA
*
32447348 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32447362 GGCTCAATAT
Statistics
Matches: 95, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
25 1 0.01
26 17 0.18
27 72 0.76
28 2 0.02
29 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTTGATTACTA
Found at i:32455276 original size:80 final size:79
Alignment explanation
Indices: 32455141--32455343 Score: 268
Period size: 79 Copynumber: 2.6 Consensus size: 79
32455131 TGGATGATAA
* * *
32455141 CCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGTATT
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCA-T
* *
32455205 TGTGCGAGTTATTACAT
63 GGTGCGAGTTACTACAT
*
32455222 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATGGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATGGT
*
32455287 GCGAGTTACTATAT
66 GCGAGTTACTACAT
* *
32455301 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
32455344 TTAAATCCGA
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
77 2 0.02
78 18 0.16
79 35 0.32
80 35 0.32
81 20 0.18
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATGGT
GCGAGTTACTACAT
Found at i:32455300 original size:39 final size:40
Alignment explanation
Indices: 32455141--32455343 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
32455131 TGGATGATAA
* *
32455141 CCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTA-TAT
* * *
32455182 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32455222 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32455262 CCGGGCTAAGTCCCGAAGGCA-TGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32455301 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32455340 CCGG
1 CCGG
32455344 TTAAATCCGA
Statistics
Matches: 146, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 54 0.37
40 70 0.48
41 20 0.14
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32466123 original size:23 final size:23
Alignment explanation
Indices: 32466075--32466172 Score: 92
Period size: 23 Copynumber: 4.1 Consensus size: 23
32466065 AATCACTTTA
* *
32466075 ATATTAAATTTAATCT--AATATG
1 ATATT-AATTTAATATAAAATATT
32466097 ATATTAATTTAATATAAAATATT
1 ATATTAATTTAATATAAAATATT
32466120 ATATTAATTTAATCACTTGATAAATATT
1 ATATTAATTTAAT-A--T-A-AAATATT
* *
32466148 ATATTAATTTAATATTAAATCTT
1 ATATTAATTTAATATAAAATATT
32466171 AT
1 AT
32466173 TAAGTTAATA
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
21 9 0.14
22 5 0.08
23 26 0.40
24 1 0.02
25 1 0.02
26 1 0.02
27 2 0.03
28 20 0.31
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATTAATTTAATATAAAATATT
Found at i:32466131 original size:28 final size:29
Alignment explanation
Indices: 32466100--32466165 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
32466090 TAATATGATA
32466100 TTAATTTAA-T-ATAAAATATTATATTAAT
1 TTAATTTAATTGAT-AAATATTATATTAAT
* *
32466128 TTAA-TCACTTGATAAATATTATATTAAT
1 TTAATTTAATTGATAAATATTATATTAAT
32466156 TTAATATTAA
1 TTAAT-TTAA
32466166 ATCTTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
27 2 0.07
28 24 0.80
29 2 0.07
30 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (29 bp):
TTAATTTAATTGATAAATATTATATTAAT
Found at i:32467739 original size:15 final size:15
Alignment explanation
Indices: 32467719--32467750 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
32467709 TATGCATGCA
32467719 AAATATAAAAGACAT
1 AAATATAAAAGACAT
32467734 AAATATAAAAGACAT
1 AAATATAAAAGACAT
32467749 AA
1 AA
32467751 TAGTGAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:32473419 original size:6 final size:6
Alignment explanation
Indices: 32473408--32473456 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
32473398 TCTGTTTCTA
* * * *
32473408 GAATCT GAATCT GGATCT GAATTT GAATTT GAATCT GAATCT GTATCT
1 GAATCT GAATCT GAATCT GAATCT GAATCT GAATCT GAATCT GAATCT
32473456 G
1 G
32473457 CTTCTAACTG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (6 bp):
GAATCT
Found at i:32481231 original size:16 final size:16
Alignment explanation
Indices: 32481210--32481243 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32481200 CAATGCTTTC
32481210 TTTACATAGGGAGAGT
1 TTTACATAGGGAGAGT
32481226 TTTACATAGGGAGAGT
1 TTTACATAGGGAGAGT
32481242 TT
1 TT
32481244 AGAGAGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (16 bp):
TTTACATAGGGAGAGT
Found at i:32481818 original size:19 final size:19
Alignment explanation
Indices: 32481774--32481810 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32481764 GGCTCCCAGG
*
32481774 CCCAATTTACAATCTTAGA
1 CCCAATTTACAATATTAGA
*
32481793 CCCAATTTACGATATTAG
1 CCCAATTTACAATATTAG
32481811 GTCCAATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (19 bp):
CCCAATTTACAATATTAGA
Found at i:32487401 original size:26 final size:26
Alignment explanation
Indices: 32487372--32487423 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32487362 GATAAGTACC
32487372 TATACCATGACCCATAACCAAATCAA
1 TATACCATGACCCATAACCAAATCAA
* *
32487398 TATACCATGGCCCGTAACCAAATCAA
1 TATACCATGACCCATAACCAAATCAA
32487424 GGTAACTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (26 bp):
TATACCATGACCCATAACCAAATCAA
Found at i:32502163 original size:42 final size:42
Alignment explanation
Indices: 32502091--32502253 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
32502081 TTAGGGTTAC
* * *
32502091 TGAGACTAT-GTGTAAGACCATATATGGGATATGGCATCTATA
1 TGAGACT-TCGTGTAAGACCATATCTAGGATATGGCATCGATA
* * *
32502133 TGAAACTTCGTGTAAGGCCATATCTAGGATATGGCAT-GGTA
1 TGAGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATA
* * * *
32502174 TGAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTAGGATA-TGGCATCGATA
* *
32502217 TGAGA-TCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGACT-TCGTGTAAGACCATATCTAGGATATGGCAT
32502254 TGGCATGGTA
Statistics
Matches: 98, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
41 28 0.29
42 44 0.45
43 26 0.27
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:32502238 original size:84 final size:83
Alignment explanation
Indices: 32502091--32502253 Score: 220
Period size: 84 Copynumber: 2.0 Consensus size: 83
32502081 TTAGGGTTAC
* * * * *
32502091 TGAGACTATGTGTAAGACCATATATGGGATATGGCATCTATATGAAACTTCGTGTAAGGCCATAT
1 TGAGACTATGTGTAAGACCATAGATGGGATATGGCATCGATATGAAACTCCATGTAAGACCATAT
32502156 CTAGGATATGGCATGGTA
66 CTAGGATATGGCATGGTA
* * * *
32502174 TGAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA-TCCCATGTAAGACCAT
1 TGAGACTATGTGTAAGACCATAGATGGGATA-TGGCATCGATATGAAACT-CCATGTAAGACCAT
32502238 ATCTAGGATATGGCAT
64 ATCTAGGATATGGCAT
32502254 TGGCATGGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
83 28 0.41
84 41 0.59
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (83 bp):
TGAGACTATGTGTAAGACCATAGATGGGATATGGCATCGATATGAAACTCCATGTAAGACCATAT
CTAGGATATGGCATGGTA
Found at i:32514914 original size:46 final size:46
Alignment explanation
Indices: 32514846--32514972 Score: 125
Period size: 46 Copynumber: 2.8 Consensus size: 46
32514836 TATATCGTGA
* * * *
32514846 GGCTAATGTATGTCCCAAACATGTCTTACACTAGCTCT-A-GTCTCAAT
1 GGCTGATGAATGTCCTAGACATGTCTTACACTAGCTCTCATG-CT--AT
* * * * *
32514893 GTC-GATGCATGTCCTAGACATGTCTTACACTGGTTCTCATGCTGT
1 GGCTGATGAATGTCCTAGACATGTCTTACACTAGCTCTCATGCTAT
32514938 GGCTGATGAATGTCCTAGACATGTCTTACACTAGC
1 GGCTGATGAATGTCCTAGACATGTCTTACACTAGC
32514973 ACACATATCA
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
45 3 0.05
46 56 0.86
47 5 0.08
48 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (46 bp):
GGCTGATGAATGTCCTAGACATGTCTTACACTAGCTCTCATGCTAT
Found at i:32518405 original size:42 final size:42
Alignment explanation
Indices: 32518354--32518433 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
32518344 TTGAGATTAT
* *
32518354 GTGTAAGACCATGTTTGGGACATAGGCATC-GTATCTGATTTC
1 GTGTAAGACCATATTTGGGACAGAGGCATCAGTA-CTGATTTC
*
32518396 GTGTAAGACCCTATTTGGGACAGAGGCATCAGTACTGA
1 GTGTAAGACCATATTTGGGACAGAGGCATCAGTACTGA
32518434 ACTACATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
42 31 0.91
43 3 0.09
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATTTGGGACAGAGGCATCAGTACTGATTTC
Found at i:32525685 original size:238 final size:238
Alignment explanation
Indices: 32525267--32525741 Score: 950
Period size: 238 Copynumber: 2.0 Consensus size: 238
32525257 TGTTCATGGA
32525267 TTATTTTGAATGAAATGAATGATTGTATGGTTGAAATTGAATTGTATTAGATCAAGAACAAAGAA
1 TTATTTTGAATGAAATGAATGATTGTATGGTTGAAATTGAATTGTATTAGATCAAGAACAAAGAA
32525332 AATTCGACTTAGATCGTGGGAAGTCCAAAATAGTTGAATAGTCGATTCGTTTCCGTCTGAAATTT
66 AATTCGACTTAGATCGTGGGAAGTCCAAAATAGTTGAATAGTCGATTCGTTTCCGTCTGAAATTT
32525397 GTACGAGGTAAGTCAAATTACAATTACGTGTTAAATTGACTAAATTCTGCGCATACAAACTGTAA
131 GTACGAGGTAAGTCAAATTACAATTACGTGTTAAATTGACTAAATTCTGCGCATACAAACTGTAA
32525462 TCTGTATTGGATGGCCTTGTGAGCCTGACGAATAAATTTCGAC
196 TCTGTATTGGATGGCCTTGTGAGCCTGACGAATAAATTTCGAC
32525505 TTATTTTGAATGAAATGAATGATTGTATGGTTGAAATTGAATTGTATTAGATCAAGAACAAAGAA
1 TTATTTTGAATGAAATGAATGATTGTATGGTTGAAATTGAATTGTATTAGATCAAGAACAAAGAA
32525570 AATTCGACTTAGATCGTGGGAAGTCCAAAATAGTTGAATAGTCGATTCGTTTCCGTCTGAAATTT
66 AATTCGACTTAGATCGTGGGAAGTCCAAAATAGTTGAATAGTCGATTCGTTTCCGTCTGAAATTT
32525635 GTACGAGGTAAGTCAAATTACAATTACGTGTTAAATTGACTAAATTCTGCGCATACAAACTGTAA
131 GTACGAGGTAAGTCAAATTACAATTACGTGTTAAATTGACTAAATTCTGCGCATACAAACTGTAA
32525700 TCTGTATTGGATGGCCTTGTGAGCCTGACGAATAAATTTCGA
196 TCTGTATTGGATGGCCTTGTGAGCCTGACGAATAAATTTCGA
32525742 GTAAACTCTG
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
238 237 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (238 bp):
TTATTTTGAATGAAATGAATGATTGTATGGTTGAAATTGAATTGTATTAGATCAAGAACAAAGAA
AATTCGACTTAGATCGTGGGAAGTCCAAAATAGTTGAATAGTCGATTCGTTTCCGTCTGAAATTT
GTACGAGGTAAGTCAAATTACAATTACGTGTTAAATTGACTAAATTCTGCGCATACAAACTGTAA
TCTGTATTGGATGGCCTTGTGAGCCTGACGAATAAATTTCGAC
Done.