Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 101 of 295
Found at i:32525920 original size:42 final size:43
Alignment explanation
Indices: 32525864--32525968 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
32525854 GAGATTTATG
* * * *
32525864 TGTAAGACCATGTCTGGGATATAGGCATC-GTATCTG-ATTTCA
1 TGTAAGACCATGTCTGGGACAGAGGCATCAATAT-TGAATTACA
* *
32525906 TGTAAGACCTTGTCTGGGACAGAGGTATCAATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCAATATTGAATTACA
32525949 TGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
32525969 GTCGACATTG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCAATATTGAATTACA
Found at i:32535471 original size:30 final size:31
Alignment explanation
Indices: 32535437--32535494 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
32535427 ATTTTATGAC
**
32535437 CTAGGGGTGAAAGGGTCATTTTG-CAAAGGT
1 CTAGGGGCAAAAGGGTCATTTTGTCAAAGGT
*
32535467 CTAGGGGCAAAATGGTCATTTTGTCAAA
1 CTAGGGGCAAAAGGGTCATTTTGTCAAA
32535495 TTTTAAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (31 bp):
CTAGGGGCAAAAGGGTCATTTTGTCAAAGGT
Found at i:32535982 original size:96 final size:92
Alignment explanation
Indices: 32535829--32535999 Score: 236
Period size: 96 Copynumber: 1.8 Consensus size: 92
32535819 TTATGTGCTA
* *
32535829 GTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGAGCCAGTGCAAGACCATCTTTGGG
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACAATATGAGAGCCAGTGCAAGACCATCTTTGGG
32535894 ACATAGCATCGGCTACAAGATGTGTTT
66 ACATAGCATCGGCTACAAGATGTGTTT
* * *
32535921 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATGGGAGAGCTAGTGTAAGACCATGT
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACA-ATAT--GAGAGCCAGTGCAAGACCATCT
*
32535985 TTGGGACATGGCATC
61 TTGGGACATAGCATC
32536000 AGCCTTGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 8 0.12
93 16 0.24
94 11 0.16
96 33 0.49
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (92 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACAATATGAGAGCCAGTGCAAGACCATCTTTGGG
ACATAGCATCGGCTACAAGATGTGTTT
Found at i:32536034 original size:49 final size:48
Alignment explanation
Indices: 32535921--32536095 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 48
32535911 AGATGTGTTT
* * * *
32535921 GTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATGGGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGC-CTTGAT-T-TGATAGCTA
*
32535971 GTGTAAGACCATGTTTGGGACATGGCATCAGCCTTGATTTCGATAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATTT-GATAGCTA
* * * *
32536020 GTGTAAGACCATGTTTGGGACATGGCAT-TGACTTGA--TGAATAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATTTG-AT-AGCTA
*
32536067 GTGTAAGTCCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
32536096 GACATTATAC
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 30 0.27
48 6 0.05
49 37 0.34
50 33 0.30
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATTTGATAGCTA
Found at i:32538966 original size:45 final size:47
Alignment explanation
Indices: 32538805--32539027 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 47
32538795 CAGCCACATT
** * * *
32538805 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAAATGTAG-TC
* * * * *
32538852 TAGTGTAAGA-CATGTTTGGGACAT-GCATCGAC-CTTGAGATGTAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGAAATGT-AGTC
**
32538899 AAAGTAAGA-CATGTCTGGGACAT-GCATCGGCTACA-AAATGT-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAAATGTAGTC
* *
32538943 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAAAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAAATGT---AGTC
32538993 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
32539028 TGTACCTTGT
Statistics
Matches: 147, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 9 0.06
45 17 0.12
46 58 0.39
47 14 0.10
48 12 0.08
50 37 0.25
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAAATGTAGTC
Found at i:32541738 original size:13 final size:13
Alignment explanation
Indices: 32541722--32541756 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
32541712 TAAAGTAATT
32541722 TAAAAAAATGAAA
1 TAAAAAAATGAAA
*
32541735 TAAAGAAATGAAA
1 TAAAAAAATGAAA
32541748 TAAAGAAAA
1 TAAA-AAAA
32541757 AGGAAAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (13 bp):
TAAAAAAATGAAA
Found at i:32541826 original size:19 final size:19
Alignment explanation
Indices: 32541783--32541827 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
32541773 CACGGTTAGC
32541783 AGGG-AAAGAAAGAAGAAA
1 AGGGAAAAGAAAGAAGAAA
*
32541801 AGAGAAAAGAAA-AAGAAAA
1 AGGGAAAAGAAAGAAG-AAA
32541820 AGGGAAAA
1 AGGGAAAA
32541828 CTAGGGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (19 bp):
AGGGAAAAGAAAGAAGAAA
Found at i:32542443 original size:3 final size:3
Alignment explanation
Indices: 32542435--32542464 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
32542425 GAATGGTAAG
*
32542435 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32542465 GGTATTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32547734 original size:13 final size:13
Alignment explanation
Indices: 32547718--32547752 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
32547708 CTAAAGTAAT
32547718 TAAAAAAATGAAA
1 TAAAAAAATGAAA
*
32547731 TAAAGAAATGAAA
1 TAAAAAAATGAAA
32547744 TAAAGAAAA
1 TAAA-AAAA
32547753 AGGAAAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (13 bp):
TAAAAAAATGAAA
Found at i:32549016 original size:18 final size:18
Alignment explanation
Indices: 32548993--32549027 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32548983 TATTAAAGAC
*
32548993 TGACTGCTACTGAATAAT
1 TGACTGCTACAGAATAAT
*
32549011 TGACTGTTACAGAATAA
1 TGACTGCTACAGAATAA
32549028 ACGACTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (18 bp):
TGACTGCTACAGAATAAT
Found at i:32549057 original size:18 final size:18
Alignment explanation
Indices: 32549000--32549059 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
32548990 GACTGACTGC
* *
32549000 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* * *
32549018 TACAGAATAAACGACTAA
1 TACTGAATAAATGACTAT
*
32549036 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
32549054 TACTGA
1 TACTGA
32549060 TTAACCGATT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:32555137 original size:46 final size:44
Alignment explanation
Indices: 32555038--32555258 Score: 149
Period size: 46 Copynumber: 4.8 Consensus size: 44
32555028 ATCTCAAGTT
* * * *
32555038 GATGCCATGTCCTAGACATGGTCTTACACCGACTATCATCTCGTA-GCC
1 GATG-CATGTCCAAGACAT-GTCTTACACTGGCTCTCA--TCG-AGGCC
* *
32555086 AATGCATGTCCAAGACATGTCTTACACTGGCTTACTCCTCGAGGCC
1 GATGCATGTCCAAGACATGTCTTACACTGGC-T-CTCATCGAGGCC
** * * * * *
32555132 GATGCATGTCCTGGACATGTCTTATACTAGCCCTCATGTCAATGCC
1 GATGCATGTCCAAGACATGTCTTACACTGGCTCTCA--TCGAGGCC
* *
32555178 GATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGT-CCAAGACAT-GTCTTACACTGGCTCTCAT--CGAGGCC
* *
32555226 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCAAGACATGTCTTACACTGGCTC
32555259 ACACACGAAT
Statistics
Matches: 136, Mismatches: 26, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 71 0.52
47 32 0.24
48 29 0.21
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCAAGACATGTCTTACACTGGCTCTCATCGAGGCC
Found at i:32562458 original size:40 final size:40
Alignment explanation
Indices: 32562413--32562596 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
32562403 CTCGCACAAG
* *
32562413 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32562453 GCCTTCGAGACTTATCCCGGATA-AGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32562492 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
32562532 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
32562573 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
32562597 CATTCGAATA
Statistics
Matches: 118, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 31 0.26
40 58 0.49
41 29 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:32562532 original size:79 final size:81
Alignment explanation
Indices: 32562413--32562596 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
32562403 CTCGCACAAG
* * *
32562413 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGAGA-CTTA-TCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCG-GATCTTAGT-CCGGATA
* *
32562476 -AGTCGC-TAGCACAAAT
64 TAGTCACTTAGCACAAAA
* * *
32562492 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATA
32562557 GTCACTTAGCACAAAA
66 GTCACTTAGCACAAAA
*
32562573 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
32562597 CATTCGAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.02
79 52 0.58
80 6 0.07
81 30 0.33
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATA
GTCACTTAGCACAAAA
Found at i:32570445 original size:39 final size:40
Alignment explanation
Indices: 32570391--32570600 Score: 211
Period size: 40 Copynumber: 5.3 Consensus size: 40
32570381 AAACCAAGTA
* * *
32570391 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTTGCACAAATG
* *
32570430 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
32570470 CCTTCGGGACTTAGCCCGGATATAGTAAC-T-CACACAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACA-AATG
* * *
32570509 CCTTCGGG-CTTAGCCCGGAATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAGTAACTTGCACAAATG
* * * *
32570549 CCTTC-GGATCTTAGTCCGG-GATAGTCACTTAGCA-AAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCACAAATG
32570588 CCTTCGGGACTTA
1 CCTTCGGGACTTA
32570601 TCATCCGAAT
Statistics
Matches: 146, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
38 14 0.10
39 56 0.38
40 63 0.43
41 13 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
Found at i:32570591 original size:79 final size:79
Alignment explanation
Indices: 32570429--32570600 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 79
32570419 TTGCTCAAAT
* *
32570429 GCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAGATA
* *
32570494 GTAACTCACACAAT
66 GTAACTCACAAAAA
* *
32570508 GCCTTCGGG-CTTAGCCCGGAATT-TAGTCACTAGCACAAATGCCTTC-GGATCTTAGTCCGG-G
1 GCCTTCGGGACTTAGCCCGG--TTATAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGAG
* *
32570569 ATAGTCACTTAGCAAAAA
63 ATAGTAACTCA-CAAAAA
32570587 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
32570601 TCATCCGAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
78 22 0.28
79 52 0.65
80 6 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAGATA
GTAACTCACAAAAA
Found at i:32577688 original size:40 final size:40
Alignment explanation
Indices: 32577611--32577833 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
32577601 GCTACTTGCT
32577611 CAAATGCCTTCGGGACTTAG-CC-----TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
32577645 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
32577685 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
32577725 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
32577765 CAAATGCCTTCGGGA-TTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
32577804 CAAATGCCTTCGGGACTTAGCCCAGTTATA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATA
32577834 ATCCGAATAT
Statistics
Matches: 174, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
34 20 0.11
35 2 0.01
38 1 0.01
39 34 0.20
40 116 0.67
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:32577818 original size:119 final size:114
Alignment explanation
Indices: 32577611--32577833 Score: 333
Period size: 119 Copynumber: 1.9 Consensus size: 114
32577601 GCTACTTGCT
*
32577611 CAAATGCCTTCGGGACTTAGCCTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CAAATGCCTTCGGGACTTAGCCTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
32577676 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66 TAACTAGCACAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
32577725 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-TTAGCCCGG
1 CAAATGCCTTCGGGACTTAG-CC-----TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
32577789 A-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGTTATA
60 ATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGTTATA
32577834 ATCCGAATAT
Statistics
Matches: 98, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
114 20 0.20
115 2 0.02
118 1 0.01
119 48 0.49
120 27 0.28
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (114 bp):
CAAATGCCTTCGGGACTTAGCCTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
Found at i:32582392 original size:46 final size:45
Alignment explanation
Indices: 32582339--32582508 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 45
32582329 TTTGTAGCCG
* *
32582339 ATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCT-GAGGCCA
* * * *
32582385 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATC-TGAGGCCA
* * *
32582431 ATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTGAGGCCA
*
32582479 AGGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
32582509 ACACAAATGA
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
46 52 0.50
47 27 0.26
48 25 0.24
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTGAGGCCA
Found at i:32582462 original size:48 final size:46
Alignment explanation
Indices: 32582392--32582508 Score: 137
Period size: 47 Copynumber: 2.5 Consensus size: 46
32582382 CCGATGCATG
* * **
32582392 TCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT-GCCAATGCCATA
1 TCCCAGACATGTCTTACACTAGCTCTCATAAT-ATGGCCAA-GCCATA
* * *
32582439 TCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCAAGGCATG
1 TCCCAGACAT-GTCTTACACTAGCTCTCATAATATGGCCAAGCCATA
32582486 TCCCAGACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
32582509 ACACAAATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
46 13 0.21
47 24 0.39
48 24 0.39
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTCTCATAATATGGCCAAGCCATA
Found at i:32585465 original size:46 final size:46
Alignment explanation
Indices: 32585359--32585583 Score: 192
Period size: 47 Copynumber: 4.8 Consensus size: 46
32585349 ATTCGTGTGT
* *
32585359 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAGACGA
* * *
32585406 GGGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-A-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
* *
32585450 GTAAGCTATTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGA
1 G--AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGA
* * * * *
32585498 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGT
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGA
* *
32585545 GAACCAGTGTAAGACCATGATC-GGGACATGACATCGGCA
1 GAGCTAGTGTAAGA-CATG-TCTGGGACATG-CATCGGCA
32585584 CCTTACCCAT
Statistics
Matches: 149, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
44 3 0.02
45 3 0.02
46 56 0.38
47 75 0.50
48 12 0.08
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
Found at i:32585517 original size:93 final size:94
Alignment explanation
Indices: 32585360--32585533 Score: 230
Period size: 93 Copynumber: 1.9 Consensus size: 94
32585350 TTCGTGTGTG
* *
32585360 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGACGAAGGCTAGTGTAAGACATGT
32585425 CTAGGACAT-GCATCGGCCTCGAAGAGTA
66 CTAGGACATGGCATCGGCCTCGAAGAGTA
* * * *
32585453 AGCTATTGTAAGACATGTCTGGGACAT-GCATCGGC-TACGAGATGATAGTC-AGTGTAAGACCA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACAT-CGAGACGA-AGGCTAGTGTAAGA-CA
*
32585515 TGTCTGGGACATGGCATCG
63 TGTCTAGGACATGGCATCG
32585534 ACTTGAGATG
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
91 1 0.01
92 22 0.31
93 41 0.59
94 6 0.09
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGACGAAGGCTAGTGTAAGACATGT
CTAGGACATGGCATCGGCCTCGAAGAGTA
Found at i:32585556 original size:93 final size:92
Alignment explanation
Indices: 32585364--32585583 Score: 218
Period size: 93 Copynumber: 2.3 Consensus size: 92
32585354 TGTGTGAGCT
* * *
32585364 AGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATGTCTAG
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAGACGAAGGCTAGTGTAAGACATGTCTAG
* *
32585429 GACATGCATCGGCCTCGAAGAGTAAGCT
65 GACATGCATCGGACTCGAAGAGTAAGCC
* * *
32585457 ATTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGATAGTC-AGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGA-AGGCTAGTGTAAGA-CATGTCT
* *
32585520 GGGACATGGCATC-GACTTG-AGATGTGAA-CC
63 AGGACAT-GCATCGGACTCGAAGA-GT-AAGCC
32585550 AGTGTAAGACCATGATC-GGGACATGACATCGGCA
1 AGTGTAAGA-CATG-TCTGGGACATG-CATCGGCA
32585584 CCTTACCCAT
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
91 1 0.01
92 25 0.24
93 52 0.49
94 19 0.18
95 9 0.08
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAAGGCTAGTGTAAGACATGTCTAGG
ACATGCATCGGACTCGAAGAGTAAGCC
Found at i:32600264 original size:46 final size:46
Alignment explanation
Indices: 32600214--32600386 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
32600204 TTGAGCATCC
*
32600214 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
32600260 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* *
32600307 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
32600353 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32600387 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:32600320 original size:93 final size:93
Alignment explanation
Indices: 32600208--32600379 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32600198 GGATGATTGA
* * *
32600208 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
32600273 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32600301 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
*
32600366 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
32600380 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32610285 original size:27 final size:27
Alignment explanation
Indices: 32610255--32610432 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32610245 ATATTGAGTC
* * * *
32610255 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32610282 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32610309 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32610337 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32610364 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32610391 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32610418 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32610433 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32610394 original size:82 final size:81
Alignment explanation
Indices: 32610276--32610431 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32610266 TGCTATATAA
* *
32610276 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32610341 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32610358 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32610422 CACTTAGTGC
65 CACTTAGTGC
32610432 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32625148 original size:49 final size:47
Alignment explanation
Indices: 32624903--32625214 Score: 186
Period size: 49 Copynumber: 6.6 Consensus size: 47
32624893 TTTGTGTGCT
*
32624903 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT-TAT-GA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TCGATGGATGAGCC
* * * *
32624949 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCTCAAGAT-G-TAATCCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTC--GATGGATGA-GCC
* * * * *
32624998 A-TGTAAGA-CTTGTTTGGGACAT-GCATCGGCTACGA--GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGATGGATGAGCC
* * *
32625041 AGTGTAAGACCATGTCTAGGACATGGCATCG-CACGAATATAGGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCG---AT-GGATGAGCC
* * * * * *
32625090 AGTGCAAGACCATGTCTGGAACATGGCGTCGGCCTCGATTTTGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA--TGGATGAGCC
*
32625139 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCC
*
32625186 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
32625215 TGACATTAAA
Statistics
Matches: 206, Mismatches: 36, Indels: 47
0.71 0.12 0.16
Matches are distributed among these distances:
43 3 0.01
44 12 0.06
45 16 0.08
46 26 0.13
47 56 0.27
48 24 0.12
49 62 0.30
50 4 0.02
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCC
Found at i:32628128 original size:22 final size:22
Alignment explanation
Indices: 32628098--32628176 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
32628088 CAAGCTGATA
*
32628098 AACAATAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
*
32628120 AACAGTAAGCTCT-TTCAAGCT-
1 AACAGTAAGCTCTATT-GAGCTG
* * *
32628141 ACATAGGTAAGCTCCAATGAGCTG
1 A-ACA-GTAAGCTCTATTGAGCTG
32628165 AAACAGTAAGCT
1 -AACAGTAAGCT
32628177 ATTAGAAGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
21 3 0.07
22 18 0.41
23 19 0.43
24 3 0.07
25 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:32633449 original size:39 final size:39
Alignment explanation
Indices: 32633352--32633495 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 39
32633342 GTGGCTAATT
* *
32633352 CCGGGCTAAGTCCCAAAGGCATTCGTGCGAGCTACTATA
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
* * *
32633391 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 -CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
* *
32633431 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAT-A
32633471 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTG
32633496 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 35 0.37
40 59 0.63
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
Found at i:32633509 original size:40 final size:40
Alignment explanation
Indices: 32633308--32633518 Score: 189
Period size: 40 Copynumber: 5.3 Consensus size: 40
32633298 TGTTCGGATG
* * * * *
32633308 ATAACCGAGCTAAGTCCC-GAGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCAAAG-GCATTTGTGCGAGTGACT
* *
32633348 A-ATTCCGGGCTAAGTCCCAAAGGCATTCGTGCGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCAAAGGCATTTGTGCGAG-TGACT
* * * * *
32633388 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACT
* * *
32633428 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACT
* * *
32633467 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACT
*
32633507 ATATCC-GGCTAA
1 ATAACCGGGCTAA
32633519 ACTCCGAAGG
Statistics
Matches: 144, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
39 43 0.30
40 97 0.67
41 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACT
Found at i:32633528 original size:79 final size:79
Alignment explanation
Indices: 32633308--32633518 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
32633298 TGTTCGGATG
* *
32633308 ATAACCGAGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCAAAGGC
1 ATAACCGAGCTAAGTCCCAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGGC
*
32633372 ATTCGTGCGAGCTACT
64 ATTCGTGCAAGCTACT
* * * ***
32633388 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGAGCTAAGTCCC-AAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
* *
32633452 TTTGTGCAAGTTACT
65 TTCGTGCAAGCTACT
*
32633467 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGAGCTAAGTCCC-AAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
32633519 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 73 0.67
80 33 0.30
81 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGAGCTAAGTCCCAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCAAGCTACT
Found at i:32641573 original size:28 final size:28
Alignment explanation
Indices: 32641476--32641589 Score: 128
Period size: 27 Copynumber: 4.2 Consensus size: 28
32641466 AGCATGGCTG
* * *
32641476 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* * * *
32641502 CCAGATACTGATA-TTGTGGTAGAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
*
32641529 CCAG-AACAGATATTTGTGGCGTAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
32641556 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
32641584 CCAGAA
1 CCAGAA
32641590 CTCTTCCTCC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 10 0.14
27 36 0.49
28 28 0.38
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCATAGCCA
Found at i:32641590 original size:55 final size:53
Alignment explanation
Indices: 32641476--32641590 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 53
32641466 AGCATGGCTG
* * * *
32641476 CCAGAACAGATATTGTGACAGAGTCACCAGATACTGATATTGTGGTAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* *
32641529 CCAGAACAGATATTTGTGGC-GTAGCCACCAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCAGAAACAGATA-TTGTGGCAGAGCCA
32641584 CCAGAAC
1 CCAGAAC
32641591 TCTTCCTCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 13 0.25
54 21 0.40
55 19 0.36
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:32645818 original size:28 final size:28
Alignment explanation
Indices: 32645782--32645860 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
32645772 GCAATCAAAT
* *
32645782 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTCAGTGTGCGAAATATTGAGA
**
32645810 ATGGCACTCAGTGTGCGAGGTATTGAGA
1 ATGGCACTCAGTGTGCGAAATATTGAGA
* * *
32645838 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTCAGTGTGCGAAATAT
32645861 CGAATGATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (28 bp):
ATGGCACTCAGTGTGCGAAATATTGAGA
Found at i:32652704 original size:28 final size:28
Alignment explanation
Indices: 32652633--32652722 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
32652623 GTGATAGAGT
* * * * *
32652633 CACCAGATATAGATA-TTGTGGTAGAAC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
32652660 CACCA-AAACAGATATTTGTGGCGTAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
32652687 CACCAGAAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
32652715 CACCAGAA
1 CACCAGAA
32652723 CTCTTCCTCC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.13
27 18 0.33
28 29 0.54
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:32654746 original size:28 final size:27
Alignment explanation
Indices: 32654689--32654746 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
32654679 TTATACAGTC
* * *
32654689 AAAACACAGAAATTCTAAAATTCATTAA
1 AAAACACAGAAATCCCAAAAATCA-TAA
* *
32654717 AAATCACAGAAATCCCAAAAATCCTAA
1 AAAACACAGAAATCCCAAAAATCATAA
32654744 AAA
1 AAA
32654747 TTAGGGTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAACACAGAAATCCCAAAAATCATAA
Found at i:32658651 original size:56 final size:56
Alignment explanation
Indices: 32658560--32658682 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
32658550 GAGATTGGCG
* * *
32658560 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
32658617 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
32658672 CTGAGTGTGCG
1 CTAAGTGTGCG
32658683 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:32658669 original size:27 final size:28
Alignment explanation
Indices: 32658560--32658682 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
32658550 GAGATTGGCG
* * * *
32658560 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
32658589 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32658617 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32658645 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32658672 CTGAGTGTGCG
1 CTAAGTGTGCG
32658683 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:32658693 original size:27 final size:27
Alignment explanation
Indices: 32658585--32658695 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
32658575 TAAATTGTAC
* * *
32658585 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
32658613 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
32658641 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
32658668 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
32658695 A
1 A
32658696 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:32666850 original size:56 final size:56
Alignment explanation
Indices: 32666759--32666881 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
32666749 GAGATTGGCG
* * *
32666759 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
32666816 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
32666871 CTGAGTGTGCG
1 CTAAGTGTGCG
32666882 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:32666868 original size:27 final size:28
Alignment explanation
Indices: 32666759--32666881 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
32666749 GAGATTGGCG
* * * *
32666759 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
32666788 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32666816 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32666844 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32666871 CTGAGTGTGCG
1 CTAAGTGTGCG
32666882 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:32666892 original size:27 final size:27
Alignment explanation
Indices: 32666784--32666894 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
32666774 TAAATTGTAC
* * *
32666784 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
32666812 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
32666840 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
32666867 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
32666894 A
1 A
32666895 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:32674329 original size:22 final size:23
Alignment explanation
Indices: 32674304--32674367 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
32674294 TGATAAACAG
32674304 TAAGCTCTATTGAGCTGAATA-A
1 TAAGCTCTATTGAGCTGAATAGA
* *
32674326 TAAGCTCT-TTCGAGCTAAATAGG
1 TAAGCTCTATT-GAGCTGAATAGA
* *
32674349 TAAGCTCCAATGAGCTGAA
1 TAAGCTCTATTGAGCTGAA
32674368 ATAGTAGGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
21 2 0.06
22 17 0.50
23 14 0.41
24 1 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAATAGA
Found at i:32674354 original size:45 final size:46
Alignment explanation
Indices: 32674297--32674401 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 46
32674287 CCCAAGTTGA
* *
32674297 TAAA-CAGTAAGCTCTATTGAGCTG-AATAATAAGCTCTTT-CGAGC
1 TAAATCAGTAAGCTCCAATGAGCTGAAATAATAAGCT-TTTACGAGC
* *
32674341 TAAAT-AGGTAAGCTCCAATGAGCTGAAATAGTAGGCTTTTACGAGC
1 TAAATCA-GTAAGCTCCAATGAGCTGAAATAATAAGCTTTTACGAGC
*
32674387 TGAATCAGTAAGCTC
1 TAAATCAGTAAGCTC
32674402 ATACGAGCTG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
44 5 0.10
45 19 0.37
46 26 0.51
47 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (46 bp):
TAAATCAGTAAGCTCCAATGAGCTGAAATAATAAGCTTTTACGAGC
Found at i:32674396 original size:23 final size:23
Alignment explanation
Indices: 32674302--32674411 Score: 77
Period size: 23 Copynumber: 4.8 Consensus size: 23
32674292 GTTGATAAAC
*
32674302 AGTAAGCTC-TATTGAGCTG-AAT
1 AGTAAGCTCATA-CGAGCTGAAAT
* * *
32674324 AATAAGCTCTTTCGAGCT-AAAT
1 AGTAAGCTCATACGAGCTGAAAT
*
32674346 AGGTAAGCTCCA-ATGAGCTGAAAT
1 A-GTAAGCT-CATACGAGCTGAAAT
* **
32674370 AGTAGGCTTTTACGAGCTG-AAT
1 AGTAAGCTCATACGAGCTGAAAT
32674392 CAGTAAGCTCATACGAGCTG
1 -AGTAAGCTCATACGAGCTG
32674412 GGGTGAGTTC
Statistics
Matches: 67, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
22 20 0.30
23 41 0.61
24 6 0.09
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (23 bp):
AGTAAGCTCATACGAGCTGAAAT
Found at i:32676143 original size:3 final size:3
Alignment explanation
Indices: 32676137--32676165 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32676127 CATGAAATCA
32676137 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
32676166 GGTGCCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:32681225 original size:107 final size:108
Alignment explanation
Indices: 32680975--32681284 Score: 401
Period size: 109 Copynumber: 2.9 Consensus size: 108
32680965 TTTGTTTGTT
* * * *
32680975 TTGGCCTTCTAATGGCCGGCAAC-AGTACAAAAAAAAAATTCAATTTTTTTTGGTGCTGGCCTTA
1 TTGGCCTTCTAATGGCCGGCACCAAGTAC--GAAAAAAATTCAAATTTTTTTGGTGCTGGCCTTG
* *
32681039 TAATGGTCGGCACCAGAGTACCAGTATTTAAAAAAAAATTTTGGTC
64 TAATGGCCGGCACCAGAGTACCAATATTTAAAAAAAAA-TTTGGTC
* * * *
32681085 CTGGTCTTCTAATGGCCGACACCAAGTATGAAAAAAATTCAAATTTTTTTGGTGCTGGCCTTGTA
1 TTGGCCTTCTAATGGCCGGCACCAAGTACGAAAAAAATTCAAATTTTTTTGGTGCTGGCCTTGTA
* * *
32681150 ATGGCCAGCACCAAACTACCAATATTTAAAAAAAAA-TTGGTC
66 ATGGCCGGCACCAGAGTACCAATATTTAAAAAAAAATTTGGTC
* * **
32681192 TTGGCCTTGTAATGGCTGGCACCAAGTACGAAAAAAATTC-AATTTTTTTTATGCTGGCCTTGTA
1 TTGGCCTTCTAATGGCCGGCACCAAGTACGAAAAAAATTCAAATTTTTTTGGTGCTGGCCTTGTA
* *
32681256 ATGGCTGGCACTAGAGTACCAATATTTAA
66 ATGGCCGGCACCAGAGTACCAATATTTAA
32681285 TTTTTTTTTA
Statistics
Matches: 173, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
106 46 0.27
107 40 0.23
109 64 0.37
110 19 0.11
111 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (108 bp):
TTGGCCTTCTAATGGCCGGCACCAAGTACGAAAAAAATTCAAATTTTTTTGGTGCTGGCCTTGTA
ATGGCCGGCACCAGAGTACCAATATTTAAAAAAAAATTTGGTC
Found at i:32687447 original size:6 final size:6
Alignment explanation
Indices: 32687433--32687475 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
32687423 TCAACTTTTT
* *
32687433 TTTTCA TTTTAA -TTTAA TTTTAA TTTTAA -TTTAA TTTCAA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
32687476 CATTTCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 10 0.30
6 23 0.70
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:32687448 original size:5 final size:5
Alignment explanation
Indices: 32687440--32687492 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
32687430 TTTTTTTCAT
* * *
32687440 TTTAA TTTAA TTTTAA TTTTAA TTTAA TTTCAA TTTCA TTTCA TTTCA
1 TTTAA TTTAA -TTTAA -TTTAA TTTAA TTT-AA TTTAA TTTAA TTTAA
32687488 TTTAA
1 TTTAA
32687493 ATTATTTATC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 28 0.64
6 16 0.36
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTAA
Found at i:32687452 original size:11 final size:11
Alignment explanation
Indices: 32687438--32687475 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
32687428 TTTTTTTTTC
32687438 ATTTTAATTTA
1 ATTTTAATTTA
32687449 ATTTTAATTTTA
1 ATTTTAA-TTTA
32687461 A-TTTAATTTCA
1 ATTTTAATTT-A
32687472 ATTT
1 ATTT
32687476 CATTTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.12
11 14 0.58
12 7 0.29
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTTTAATTTA
Found at i:32687458 original size:17 final size:17
Alignment explanation
Indices: 32687433--32687475 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
32687423 TCAACTTTTT
*
32687433 TTTTCATTTTAATTTAA
1 TTTTAATTTTAATTTAA
32687450 TTTTAATTTTAATTTAA
1 TTTTAATTTTAATTTAA
*
32687467 TTTCAATTT
1 TTTTAATTT
32687476 CATTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATTTTAATTTAA
Found at i:32687621 original size:18 final size:17
Alignment explanation
Indices: 32687596--32687670 Score: 82
Period size: 18 Copynumber: 4.4 Consensus size: 17
32687586 CCTAATATAA
*
32687596 ATTT-TTTTCATATTATT
1 ATTTATTTTCAT-TTAAT
*
32687613 TTTTATTTTCATTTAAAT
1 ATTTATTTTCATTT-AAT
*
32687631 ATTTATTTTCATTTTAGT
1 ATTTATTTTCA-TTTAAT
32687649 ATTTATTTTCATTTAA-
1 ATTTATTTTCATTTAAT
32687665 ATTTAT
1 ATTTAT
32687671 AAAATTTTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
16 6 0.12
17 9 0.18
18 32 0.64
19 3 0.06
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (17 bp):
ATTTATTTTCATTTAAT
Found at i:32687640 original size:36 final size:35
Alignment explanation
Indices: 32687596--32687666 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
32687586 CCTAATATAA
* *
32687596 ATTTTTTTCATATTATTTTTTATTTTCATTTAAAT
1 ATTTTTTTCATATTAGTATTTATTTTCATTTAAAT
*
32687631 ATTTATTTTCATTTTAGTATTTATTTTCATTTAAAT
1 ATTT-TTTTCATATTAGTATTTATTTTCATTTAAAT
32687667 TTATAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 4 0.12
36 28 0.88
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (35 bp):
ATTTTTTTCATATTAGTATTTATTTTCATTTAAAT
Found at i:32687690 original size:14 final size:14
Alignment explanation
Indices: 32687671--32687697 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32687661 TTAAATTTAT
32687671 AAAATTTTATATTC
1 AAAATTTTATATTC
32687685 AAAATTTTATATT
1 AAAATTTTATATT
32687698 TTATTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
AAAATTTTATATTC
Found at i:32689822 original size:108 final size:109
Alignment explanation
Indices: 32689702--32690115 Score: 557
Period size: 110 Copynumber: 3.7 Consensus size: 109
32689692 AAAAAGTCCC
* * *
32689702 TGGTGCCGGCCATTAGAAAACCAAGACC-AATTTTTTTTTAAATACTAGTACTCTGGTGTCGGCC
1 TGGTGCCGGCCATTAGAAGACCAGGACCAAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCC
*
32689766 ATTACAAGGCCAGCACTAAAAAATTTTGAATTTTTTTTCTTGCT
66 ATTACAAGGCCAGCACAAAAAAATTTTGAATTTTTTTTCTTGCT
* *
32689810 TGGTGCCGGCCATTAGAAGACCAGGACCAAATTTCTTTTTTAAATATTGGTACTCTGGTGCCGGC
1 TGGTGCCGGCCATTAGAAGACCAGGACCAAATTT-TTTTTTAAATACTAGTACTCTGGTGCCGGC
* *
32689875 CATTACAAGGCCAACACAAAAAAAAATTTGAATTTTTTTT-TTGTACT
65 CATTACAAGGCCAGCAC-AAAAAAATTTTGAATTTTTTTTCTTG--CT
** * *
32689922 TGGTGCTAGCCATTAGTAGACCAGGACC-AATTTTTTTTTAAATACTAGTAGTCTGGTGCCGGCC
1 TGGTGCCGGCCATTAGAAGACCAGGACCAAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCC
* *
32689986 ATTACAAGGCCAGCACAAAAAAATTTTGAATTTTTTTTCGTACT
66 ATTACAAGGCCAGCACAAAAAAATTTTGAATTTTTTTTCTTGCT
* *
32690030 TGGTGCCGGCCATTAGTAGACCAGGACCAAAAAAATATTTTTTTTAAATACTGGTAGC-CTGGTG
1 TGGTGCCGGCCATTAGAAGACCAGGACC----AAAT-TTTTTTTTAAATACTAGTA-CTCTGGTG
*
32690094 CAGGCCATTACAAGGCCAGCAC
60 CCGGCCATTACAAGGCCAGCAC
32690116 CAATTTTTTT
Statistics
Matches: 270, Mismatches: 23, Indels: 20
0.86 0.07 0.06
Matches are distributed among these distances:
108 54 0.20
109 26 0.10
110 90 0.33
111 25 0.09
112 27 0.10
113 3 0.01
114 45 0.17
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (109 bp):
TGGTGCCGGCCATTAGAAGACCAGGACCAAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCC
ATTACAAGGCCAGCACAAAAAAATTTTGAATTTTTTTTCTTGCT
Found at i:32689936 original size:220 final size:221
Alignment explanation
Indices: 32689710--32690111 Score: 639
Period size: 220 Copynumber: 1.8 Consensus size: 221
32689700 CCTGGTGCCG
*
32689710 GCCATTAGAAAACCAAGACCAATTTTTTTTTAAATACTAGTACTCTGGTGTCGGCCATTACAAGG
1 GCCATTAGAAAACCAAGACCAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCCATTACAAGG
* * *
32689775 CCAGCACTAAAAAATTTTGAATTTTTTTTCTTGCTTGGTGCCGGCCATTAGAAGACCAGGACC-A
66 CCAGCACAAAAAAATTTTGAATTTTTTTTCGTACTTGGTGCCGGCCATTAGAAGACCAGGACCAA
* *
32689839 AAT-TTCTTTTTTAAATATTGGTA-CTCTGGTGCCGGCCATTACAAGGCCAACACAAAAAAAAAT
131 AATATT-TTTTTTAAATACTGGTAGC-CTGGTGCAGGCCATTACAAGGCCAACACAAAAAAAAAT
32689902 TTGAATTTTTTTTTTGTACTTGGTGCTA
194 TTGAATTTTTTTTTTGTACTTGGTGCTA
* * * *
32689930 GCCATTAGTAGACCAGGACCAATTTTTTTTTAAATACTAGTAGTCTGGTGCCGGCCATTACAAGG
1 GCCATTAGAAAACCAAGACCAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCCATTACAAGG
*
32689995 CCAGCACAAAAAAATTTTGAATTTTTTTTCGTACTTGGTGCCGGCCATTAGTAGACCAGGACCAA
66 CCAGCACAAAAAAATTTTGAATTTTTTTTCGTACTTGGTGCCGGCCATTAGAAGACCAGGACC--
32690060 AAAAATATTTTTTTTAAATACTGGTAGCCTGGTGCAGGCCATTACAAGGCCA
129 -AAAATATTTTTTTTAAATACTGGTAGCCTGGTGCAGGCCATTACAAGGCCA
32690112 GCACCAATTT
Statistics
Matches: 165, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
220 119 0.72
224 43 0.26
225 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (221 bp):
GCCATTAGAAAACCAAGACCAATTTTTTTTTAAATACTAGTACTCTGGTGCCGGCCATTACAAGG
CCAGCACAAAAAAATTTTGAATTTTTTTTCGTACTTGGTGCCGGCCATTAGAAGACCAGGACCAA
AATATTTTTTTTAAATACTGGTAGCCTGGTGCAGGCCATTACAAGGCCAACACAAAAAAAAATTT
GAATTTTTTTTTTGTACTTGGTGCTA
Found at i:32689987 original size:53 final size:53
Alignment explanation
Indices: 32689930--32690135 Score: 124
Period size: 53 Copynumber: 3.7 Consensus size: 53
32689920 CTTGGTGCTA
** *
32689930 GCCATTAGTAGACCAGGACCAATTTTTTTTTAAATACTAGTAGTCTGGTGCCG
1 GCCATTACAAGACCAGCACCAATTTTTTTTTAAATACTAGTAGTCTGGTGCCG
* * **** * * ** ** *
32689983 GCCATTACAAGGCCAGCACAAAAAAATTTTGAATTTTTTTTCGTACTTGGTGCCG
1 GCCATTACAAGACCAGCACCAATTTTTTTTTAAATACTAGTAGT-C-TGGTGCCG
** * * * *
32690038 GCCATTAGTAGACCAGGACCAAAAAAATATTTTTTTTAAATACTGGTAGCCTGGTGCAG
1 GCCATTACAAGACCAGCACC-----AAT-TTTTTTTTAAATACTAGTAGTCTGGTGCCG
*
32690097 GCCATTACAAGGCCAGCACCAATTTTTTTTTAAAATACT
1 GCCATTACAAGACCAGCACCAATTTTTTTTT-AAATACT
32690136 CGTATTTTTA
Statistics
Matches: 106, Mismatches: 38, Indels: 17
0.66 0.24 0.11
Matches are distributed among these distances:
53 36 0.34
54 11 0.10
55 23 0.22
59 23 0.22
60 3 0.03
61 10 0.09
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (53 bp):
GCCATTACAAGACCAGCACCAATTTTTTTTTAAATACTAGTAGTCTGGTGCCG
Found at i:32690118 original size:59 final size:58
Alignment explanation
Indices: 32689730--32690118 Score: 177
Period size: 55 Copynumber: 6.9 Consensus size: 58
32689720 AACCAAGACC
* *
32689730 AATTTTTTTTTAAATACTAGTA-CTCTGGTGTCGGCCATTACAAGGCCAGCA-CTAAAA
1 AATTTTTTTTTAAATACTAGTAGC-CTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
* * * * * *
32689787 AATTTTGAATTTTT--TTTCT--T-GCTTGGTGCCGGCCATTAGAAGACCAGGACC----A
1 AATTTT---TTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
* * * *
32689839 AATTTCTTTTTTAAATATTGGTA-CTCTGGTGCCGGCCATTACAAGGCCAACACAAAAAAA
1 AATTT-TTTTTTAAATACTAGTAGC-CTGGTGCCGGCCATTACAAGGCCAGCAC-CAAAAA
* * * ** ** * *
32689899 AATTTGAATTTTTT---T-TTTGTA-CTTGGTGCTAGCCATTAGTAGACCAGGACC-----
1 AATTT---TTTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
*
32689950 AATTTTTTTTTAAATACTAGTAGTCTGGTGCCGGCCATTACAAGGCCAGCA-CAAAAA
1 AATTTTTTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
* * * ** * *
32690007 AATTTTGAATTTTT---T-TTCGTA-CTTGGTGCCGGCCATTAGTAGACCAGGACCAAAAA
1 AATTTT---TTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
* *
32690063 AATATTTTTTTTAAATACTGGTAGCCTGGTGCAGGCCATTACAAGGCCAGCACCAA
1 AAT-TTTTTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAA
32690119 TTTTTTTTTA
Statistics
Matches: 240, Mismatches: 53, Indels: 76
0.65 0.14 0.21
Matches are distributed among these distances:
48 6 0.03
50 5 0.02
51 6 0.03
52 13 0.05
53 21 0.09
54 7 0.03
55 67 0.28
56 16 0.07
57 37 0.15
58 13 0.05
59 27 0.11
60 16 0.07
62 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (58 bp):
AATTTTTTTTTAAATACTAGTAGCCTGGTGCCGGCCATTACAAGGCCAGCACCAAAAA
Found at i:32697928 original size:15 final size:15
Alignment explanation
Indices: 32697908--32697946 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
32697898 TTGACCGCAA
*
32697908 CCATTGCCTCGACCT
1 CCATTGCCACGACCT
32697923 CCATTGCCACGACCT
1 CCATTGCCACGACCT
32697938 CCATTGCCA
1 CCATTGCCA
32697947 TACCATCTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.18, C:0.46, G:0.13, T:0.23
Consensus pattern (15 bp):
CCATTGCCACGACCT
Found at i:32700640 original size:40 final size:40
Alignment explanation
Indices: 32700563--32700657 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
32700553 TAGCACTAAG
* *
32700563 GTGCTCCTGTTAGCATTACAATGCTCTTGATGACACAT-T
1 GTGCTCCTGTTAGCACTACAATGCTCTTGATCACACATCT
* * * * *
32700602 CGTGCTCTTGTTAGCACTATAGTGCTTTTGATCCCACATCT
1 -GTGCTCCTGTTAGCACTACAATGCTCTTGATCACACATCT
*
32700643 GTGCTCCTATTAGCA
1 GTGCTCCTGTTAGCA
32700658 TTACGGTACT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (40 bp):
GTGCTCCTGTTAGCACTACAATGCTCTTGATCACACATCT
Found at i:32704883 original size:37 final size:37
Alignment explanation
Indices: 32704833--32704911 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32704823 TTATTACGAA
* * *
32704833 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32704870 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32704907 GTCTT
1 GTCTT
32704912 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32705117 original size:47 final size:47
Alignment explanation
Indices: 32705030--32705770 Score: 1068
Period size: 47 Copynumber: 15.4 Consensus size: 47
32705020 CCTTTCGGGA
* * * * * * * *
32705030 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32705077 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32705124 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32705171 CTTATCACATATATACACTTTCACATTCATCATTCATCGCATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACA-T--TCA-TCA---CATCGGCCATTAGGC
* *
32705225 CTTATTACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32705272 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32705319 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32705366 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32705413 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32705460 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32705511 CTTATCACATATATACATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
32705562 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
32705611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32705658 CTTATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32705705 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32705752 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32705771 CTCTTGGCTG
Statistics
Matches: 639, Mismatches: 42, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
47 442 0.69
48 2 0.00
49 59 0.09
50 6 0.01
51 91 0.14
53 1 0.00
54 38 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32711994 original size:30 final size:30
Alignment explanation
Indices: 32711958--32712018 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
32711948 GGGGATGGTC
*
32711958 ATTCTTTCGAGAATTTTTCGTCAAATCCTT
1 ATTCTTTCGAGAATTTTCCGTCAAATCCTT
32711988 ATTCTTTCGAGAATTTTCCGTCAAATCCTT
1 ATTCTTTCGAGAATTTTCCGTCAAATCCTT
32712018 A
1 A
32712019 GTCAGTCAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTCTTTCGAGAATTTTCCGTCAAATCCTT
Found at i:32713927 original size:6 final size:6
Alignment explanation
Indices: 32713916--32713942 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32713906 CTCACCTCAA
32713916 ACAGCC ACAGCC ACAGCC ACAGCC ACA
1 ACAGCC ACAGCC ACAGCC ACAGCC ACA
32713943 AACACAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.48, G:0.15, T:0.00
Consensus pattern (6 bp):
ACAGCC
Found at i:32716477 original size:49 final size:49
Alignment explanation
Indices: 32716418--32716642 Score: 292
Period size: 49 Copynumber: 4.5 Consensus size: 49
32716408 CTGATACGCA
* * * * *
32716418 TAGTAGCCTGCACATAGTACTGCACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
32716467 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
** *
32716516 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * *
32716566 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGT--ACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCTGGTACACG
32716615 TATTGTAGCCTGCACTTAGTACTACACA
1 TA--GTAGCCTGCACTTAGTACTACACA
32716643 TGCGACCTCA
Statistics
Matches: 157, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
49 82 0.52
50 44 0.28
51 30 0.19
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:32716585 original size:99 final size:98
Alignment explanation
Indices: 32716418--32716649 Score: 297
Period size: 99 Copynumber: 2.3 Consensus size: 98
32716408 CTGATACGCA
* * * ** *
32716418 TAGTAGCCTGCACATAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTTA
*
32716483 GTACTACACACGTGA-C-CAATTATCTGGTACACG
66 GTACTACACACGTGATCACAATTATCGGGT--ACG
* *
32716516 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGCCTGCACTT
* *
32716581 AGTACTACACACGTGATCACAGTTTTCGGGTACG
65 AGTACTACACACGTGATCACAATTATCGGGTACG
*
32716615 TATTGTAGCCTGCACTTAGTACTACACATGCGACC
1 TA--GTAGCCTGCACTTAGTACTACACACGCGACC
32716650 TCACAATAGA
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
98 29 0.25
99 48 0.41
100 1 0.01
101 38 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTTA
GTACTACACACGTGATCACAATTATCGGGTACG
Found at i:32718457 original size:30 final size:30
Alignment explanation
Indices: 32718423--32718486 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
32718413 ACACATTTGG
*
32718423 CCAAATCAATTATGAAACATGACAAAATGA
1 CCAAATCAATTATGAAACATAACAAAATGA
32718453 CCAAATCAATTATGAAACATAACAAAATGA
1 CCAAATCAATTATGAAACATAACAAAATGA
32718483 CCAA
1 CCAA
32718487 GTCCTCTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.55, C:0.19, G:0.08, T:0.19
Consensus pattern (30 bp):
CCAAATCAATTATGAAACATAACAAAATGA
Found at i:32720377 original size:42 final size:41
Alignment explanation
Indices: 32720300--32720453 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 41
32720290 ATGAGTTTAT
* * * *
32720300 GTGTAAGACCATATTCGGGATATGACATCGCTATGAGATTTC
1 GTGTAAGACCATATT-GGGACATGGCATCGATATGAGATATC
*
32720342 GTGTAAGACCATATCTGGGACATGGCATTGATATGAGA-ATC
1 GTGTAAGACCATAT-TGGGACATGGCATCGATATGAGATATC
**
32720383 GTGTAAGACCATAGTTGGG-CTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATA-TTGGGAC-A-TGGCATCGATATGAGATATC
* * *
32720426 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATAT-TGGGACATGGCAT
32720454 TGGAATGATT
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 20 0.21
42 55 0.59
43 18 0.19
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATATTGGGACATGGCATCGATATGAGATATC
Found at i:32720413 original size:84 final size:83
Alignment explanation
Indices: 32720300--32720455 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 83
32720290 ATGAGTTTAT
* ** * *
32720300 GTGTAAGACCATATTCGGGATATGACATCGCTATGAGATTTCGTGTAAGACCATATCTGGGACAT
1 GTGTAAGACCATATTCGGGATATGACATCGATATGAGATCCCATGTAAGACCATATCTAGGACAT
32720365 GGCATTGATATGAGAATC
66 GGCATTGATATGAGAATC
* * *
32720383 GTGTAAGACCATAGTT-GGGCTATTGGCATCGATATGAGATCCCATGTAAGACCATATCTAGGAT
1 GTGTAAGACCATA-TTCGGGATA-TGACATCGATATGAGATCCCATGTAAGACCATATCTAGGAC
32720447 ATGGCATTG
64 ATGGCATTG
32720456 GAATGATTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
83 18 0.29
84 45 0.71
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (83 bp):
GTGTAAGACCATATTCGGGATATGACATCGATATGAGATCCCATGTAAGACCATATCTAGGACAT
GGCATTGATATGAGAATC
Found at i:32727890 original size:42 final size:39
Alignment explanation
Indices: 32727832--32727995 Score: 141
Period size: 42 Copynumber: 3.9 Consensus size: 39
32727822 ACATTAGGGT
*
32727832 TATGAGTTTACGTGTAAGACCATATCTAGGATATGGCATCA
1 TATGAGATT-CGTGTAAGACCATATCT-GGATATGGCATCA
* * * *
32727873 TTATGAGATTTCGTGTAAGACCATGTCTGGACATGGAATTGA
1 -TATGAGA-TTCGTGTAAGACCATATCTGGATATGGCA-TCA
* *
32727915 TATGAGAATCGTGTAAGACCATAGT-TGAGCTATTGGCATCGA
1 TATGAGATTCGTGTAAGACCATA-TCTG-GATA-TGGCATC-A
* *
32727957 TATGAGATCCTATGTAAGACCATATCTGGGATATGGCAT
1 TATGAGATTC-GTGTAAGACCATATCT-GGATATGGCAT
32727996 TGGAATGATT
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
40 16 0.16
41 19 0.19
42 44 0.45
43 18 0.18
44 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (39 bp):
TATGAGATTCGTGTAAGACCATATCTGGATATGGCATCA
Found at i:32728797 original size:20 final size:20
Alignment explanation
Indices: 32728772--32728825 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
32728762 AACAGGGGTC
32728772 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
32728792 ACACGCCTGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
32728812 ACACGCCCATGTGG
1 ACACGCCCGTGTGG
32728826 GCAGACTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:32737772 original size:20 final size:20
Alignment explanation
Indices: 32737729--32737776 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
32737719 GCTGTTTTGT
32737729 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
32737749 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
32737768 TAT-GGCCAA
1 TATGGGCCAA
32737777 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:32741948 original size:32 final size:34
Alignment explanation
Indices: 32741911--32741990 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 34
32741901 AGAAATATAG
32741911 TTTATATG-C-CTAAATTCCTTATTAAGTCTAGT
1 TTTATATGACGCTAAATTCCTTATTAAGTCTAGT
*
32741943 TTTATATGAAACAGGTCTAAATTCCTTATTGAGTCTAGT
1 TTTATATG--AC--G-CTAAATTCCTTATTAAGTCTAGT
32741982 TTTATATGA
1 TTTATATGA
32741991 AACAGGTTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
32 8 0.20
35 1 0.03
37 1 0.03
39 30 0.75
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTATATGACGCTAAATTCCTTATTAAGTCTAGT
Found at i:32741963 original size:39 final size:39
Alignment explanation
Indices: 32741920--32741997 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
32741910 GTTTATATGC
32741920 CTAAATTCCTTATTAAGTCTAGTTTTATATGAAACAGGT
1 CTAAATTCCTTATTAAGTCTAGTTTTATATGAAACAGGT
*
32741959 CTAAATTCCTTATTGAGTCTAGTTTTATATGAAACAGGT
1 CTAAATTCCTTATTAAGTCTAGTTTTATATGAAACAGGT
32741998 TTCATGGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (39 bp):
CTAAATTCCTTATTAAGTCTAGTTTTATATGAAACAGGT
Found at i:32748494 original size:46 final size:46
Alignment explanation
Indices: 32748442--32748572 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 46
32748432 GATGGTTGAG
32748442 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** * * *
32748488 TGTCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * *
32748534 CACCCGAGCTCGTTGATTTGATTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32748573 GCGGGTTGCA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:32751870 original size:14 final size:13
Alignment explanation
Indices: 32751849--32751892 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
32751839 AATTTAACCA
32751849 TTTTTATTTTAAT
1 TTTTTATTTTAAT
32751862 TTTTCTATTTTAA-
1 TTTT-TATTTTAAT
*
32751875 TTTTTAATTT-AT
1 TTTTTATTTTAAT
32751887 TTTTTA
1 TTTTTA
32751893 CATTCTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 1 0.04
12 11 0.39
13 8 0.29
14 8 0.29
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTATTTTAAT
Found at i:32754698 original size:10 final size:10
Alignment explanation
Indices: 32754685--32754724 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
32754675 TTCATGTTAT
32754685 TTTAAAAAAA
1 TTTAAAAAAA
32754695 TTTAAAAAAA
1 TTTAAAAAAA
**
32754705 CTCAAAAAAAA
1 -TTTAAAAAAA
32754716 TTTAAAAAA
1 TTTAAAAAA
32754725 GGGTTTACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:32755068 original size:13 final size:15
Alignment explanation
Indices: 32755050--32755081 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
32755040 GGGTAATTCG
32755050 ACACGACC-TGT-GC
1 ACACGACCGTGTGGC
32755063 ACACGACCGTGTGGC
1 ACACGACCGTGTGGC
32755078 ACAC
1 ACAC
32755082 ATAACCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (15 bp):
ACACGACCGTGTGGC
Found at i:32755171 original size:6 final size:6
Alignment explanation
Indices: 32755160--32755239 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
32755150 CCAAAGCCTC
32755160 ATTTTT ATTTTT ATTTATT -TTTTT ATTTTCT ATATTCATAT ATTTTT
1 ATTTTT ATTTTT ATTT-TT ATTTTT ATTTT-T AT-TT--T-T ATTTTT
32755207 ATTTTT ATTTACTTT ATTTATT -TTTTT ATTTTT
1 ATTTTT A-TT--TTT ATTT-TT ATTTTT ATTTTT
32755240 TGGATTTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 22
0.73 0.01 0.26
Matches are distributed among these distances:
5 4 0.06
6 34 0.55
7 10 0.16
8 4 0.06
9 6 0.10
10 4 0.06
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:32755186 original size:8 final size:8
Alignment explanation
Indices: 32755161--32755240 Score: 54
Period size: 8 Copynumber: 9.5 Consensus size: 8
32755151 CAAAGCCTCA
32755161 TTTTTATTT
1 TTTTTA-TT
32755170 TTATTTATT
1 TT-TTTATT
32755179 TTTTTATT
1 TTTTTATT
*
32755187 TTCTATATT
1 TT-TTTATT
** *
32755196 CATATATT
1 TTTTTATT
32755204 TTTATT-TT
1 TTT-TTATT
*
32755212 TATTTACTT
1 TTTTTA-TT
*
32755221 TATTTATT
1 TTTTTATT
32755229 TTTTTATT
1 TTTTTATT
32755237 TTTT
1 TTTT
32755241 GGATTTATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
7 2 0.03
8 32 0.55
9 20 0.34
10 4 0.07
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTATT
Found at i:32755211 original size:29 final size:27
Alignment explanation
Indices: 32755165--32755239 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
32755155 GCCTCATTTT
* *
32755165 TATTTTTATTTATT-TTTTTATTTTCTA
1 TATTTATATTT-TTATTTTTATTTACTA
*
32755192 TATTCATATATTTTTATTTTTATTTACTT
1 TATT--TATATTTTTATTTTTATTTACTA
*
32755221 TATTTATTTTTTTATTTTT
1 TATTTATATTTTTATTTTT
32755240 TGGATTTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 18 0.44
28 2 0.05
29 21 0.51
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (27 bp):
TATTTATATTTTTATTTTTATTTACTA
Found at i:32755248 original size:25 final size:23
Alignment explanation
Indices: 32755160--32755240 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 23
32755150 CCAAAGCCTC
*
32755160 ATTTTTATTTTTATTTATTTTTTT
1 ATTTTT-TATTTATTTATTTTTTT
* *
32755184 ATTTTCTATATTCATATATTTTTATT
1 ATTTT-T-TATTTATTTATTTTT-TT
32755210 -TTTATTTACTTTATTTATTTTTTT
1 ATTT-TTTA-TTTATTTATTTTTTT
32755234 ATTTTTT
1 ATTTTTT
32755241 GGATTTATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
24 12 0.26
25 32 0.68
26 3 0.06
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (23 bp):
ATTTTTTATTTATTTATTTTTTT
Found at i:32756175 original size:19 final size:21
Alignment explanation
Indices: 32756134--32756182 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32756124 TTTCTTTTGC
**
32756134 AAAAAAGAAAAAAATCGTGAT
1 AAAAAAGAAAAAAATAATGAT
32756155 AAAAAAGAAAAAAA-AAT-AT
1 AAAAAAGAAAAAAATAATGAT
32756174 AAAAAAGAA
1 AAAAAAGAA
32756183 TTGATTGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 11 0.42
20 1 0.04
21 14 0.54
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (21 bp):
AAAAAAGAAAAAAATAATGAT
Found at i:32776133 original size:138 final size:138
Alignment explanation
Indices: 32775885--32776164 Score: 515
Period size: 138 Copynumber: 2.0 Consensus size: 138
32775875 ATGCTTCTTT
* *
32775885 TGAACAAGGGGCTAATGTTGGTGCCCTCATGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
1 TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
32775950 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
66 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
*
32776015 ACTCAAGA
131 ACTCAACA
*
32776023 TGAACAAGTGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
1 TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
*
32776088 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTTGTTCTCGGTGTTCGAAAT
66 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
32776153 ACTCAACA
131 ACTCAACA
32776161 TGAA
1 TGAA
32776165 GATTTCTTAT
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (138 bp):
TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
ACTCAACA
Found at i:32784207 original size:27 final size:27
Alignment explanation
Indices: 32784123--32784227 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
32784113 ATGGTGTACT
* * * *
32784123 CTAAAAGGAATTCCTTTGCGGCATATT
1 CTAAAAGGAATGCCTTTGTGGCGTATC
* * * *
32784150 CTGAAAGGAATGTCTTTGTAGTGTA-C
1 CTAAAAGGAATGCCTTTGTGGCGTATC
32784176 TCTAAAAGGAATGCCTTTGTGGCGTATC
1 -CTAAAAGGAATGCCTTTGTGGCGTATC
* * * *
32784204 CTAAATGGATTGCTTTTATGGCGT
1 CTAAAAGGAATGCCTTTGTGGCGT
32784228 GTCTTGTATG
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (27 bp):
CTAAAAGGAATGCCTTTGTGGCGTATC
Found at i:32787285 original size:51 final size:51
Alignment explanation
Indices: 32787209--32787316 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
32787199 CACATTGATT
*
32787209 AAACTGAAGTGCTTTAATAGGTAAACCTAGTTGTTTCTCCACTTTCGTTTG
1 AAACTCAAGTGCTTTAATAGGTAAACCTAGTTGTTTCTCCACTTTCGTTTG
32787260 AAACTCAAGTGCTTTAATAGGTAAACCTAGTTGTTTCTCCACTTTCGTTTG
1 AAACTCAAGTGCTTTAATAGGTAAACCTAGTTGTTTCTCCACTTTCGTTTG
32787311 AAACTC
1 AAACTC
32787317 TTTAAATTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (51 bp):
AAACTCAAGTGCTTTAATAGGTAAACCTAGTTGTTTCTCCACTTTCGTTTG
Found at i:32787707 original size:58 final size:58
Alignment explanation
Indices: 32787603--32787714 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
32787593 AGTGATTCTT
* * **
32787603 TCTTGGTTAATATGACCAAGCCTCAAATGTTAAAGGTATGTGTTATTAGAGTGATAAG
1 TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGATAAG
* *
32787661 TCTTGGTTAATATAACCAAGTCTCAAATGTTAAAGGTAAGCCTTATTCGAGTGA
1 TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGA
32787715 GAACTTTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (58 bp):
TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGATAAG
Found at i:32789597 original size:16 final size:16
Alignment explanation
Indices: 32789565--32789597 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32789555 TGATAGATCT
32789565 TCGACGAGCTTCGAAA
1 TCGACGAGCTTCGAAA
32789581 TCGATCGAGCTTC-AAA
1 TCGA-CGAGCTTCGAAA
32789597 T
1 T
32789598 AATCTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (16 bp):
TCGACGAGCTTCGAAA
Found at i:32793164 original size:54 final size:53
Alignment explanation
Indices: 32793082--32793185 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 53
32793072 AACGGGAGTT
*
32793082 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCCCCCTTTCAAAA
1 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCT-CCACCTTTCAAAA
32793136 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCA
1 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCA
32793186 GAAATGGTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 9 0.18
54 40 0.82
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (53 bp):
AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCAAAA
Found at i:32796380 original size:22 final size:22
Alignment explanation
Indices: 32796352--32796396 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
32796342 ACACACACAT
*
32796352 AGTCCATCATCTACTCAGGATA
1 AGTCCATCATCTACTCAAGATA
32796374 AGTCCATCATCTACTCAAGATA
1 AGTCCATCATCTACTCAAGATA
32796396 A
1 A
32796397 AGTTATGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.27
Consensus pattern (22 bp):
AGTCCATCATCTACTCAAGATA
Found at i:32808089 original size:5 final size:5
Alignment explanation
Indices: 32808079--32808122 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
32808069 TTGCATACCC
* * *
32808079 ATCCA ATCCA ATCCA ATCCA ATGCA ATGCA ATGCA ATCCA ATCC
1 ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCC
32808123 TCACGGTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.39, C:0.34, G:0.07, T:0.20
Consensus pattern (5 bp):
ATCCA
Found at i:32812080 original size:36 final size:37
Alignment explanation
Indices: 32812033--32812110 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
32812023 ATCTGTAAAA
32812033 TGAGAAAACTAAAG-GGGTGAGCTAAAAAGCTCAGTG
1 TGAGAAAACTAAAGAGGGTGAGCTAAAAAGCTCAGTG
* *
32812069 TGAGAAAACTAAGGAGGGTGAGCTAGAAAGCTCAGTG
1 TGAGAAAACTAAAGAGGGTGAGCTAAAAAGCTCAGTG
32812106 TGAGA
1 TGAGA
32812111 TTATCCTAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 13 0.33
37 26 0.67
ACGTcount: A:0.40, C:0.10, G:0.33, T:0.17
Consensus pattern (37 bp):
TGAGAAAACTAAAGAGGGTGAGCTAAAAAGCTCAGTG
Found at i:32814635 original size:24 final size:24
Alignment explanation
Indices: 32814603--32814702 Score: 146
Period size: 24 Copynumber: 4.0 Consensus size: 24
32814593 TGACATTGTG
*
32814603 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
32814627 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
32814654 GTTAAGTGAAATAAGTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
32814679 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
32814703 TGTGTTAAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
24 44 0.64
25 2 0.03
27 2 0.03
28 21 0.30
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:32814668 original size:28 final size:27
Alignment explanation
Indices: 32814599--32814714 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
32814589 GATATGACAT
*
32814599 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
32814626 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
32814651 TGTGTTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
32814678 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
32814702 TTGTGTTAAGTGA
1 -TGTGCTAAGTGA
32814715 GAAATTTCCC
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
24 43 0.56
25 3 0.04
27 3 0.04
28 28 0.36
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:32814682 original size:52 final size:52
Alignment explanation
Indices: 32814599--32814714 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
32814589 GATATGACAT
*
32814599 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
32814651 TGTGTTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
32814703 TGTGTTAAGTGA
1 TGTGTTAAGTGA
32814715 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (52 bp):
TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:32823148 original size:181 final size:181
Alignment explanation
Indices: 32822837--32823302 Score: 708
Period size: 181 Copynumber: 2.6 Consensus size: 181
32822827 GCTTCAGTCT
* * *
32822837 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC--GCAAACCTGCT-TTCTTGCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CCATCTTTC-AACTTGCTCTT-TTGCT
* * * *
32822899 ACCTCAGAGAGATAAGGC-TAGTGGCTTAAATCTACTCCATTGCTGATACATGGAGATAAGATTC
63 ACCTCAGAGAGATAAGGCTTAGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTC
*
32822963 ACCATCTGTGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAATTC
127 ACCATCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAATTC
32823018 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTACC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTACC
* *
32823083 TCAGAGAAATAAGGCTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCACCA
66 TCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCACCA
* * *
32823148 TCTGCGAAGATTTGCTCTACTGCAATCTTAGGGAGATAAAATCTTCAATTC
131 TCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAATTC
* * *
32823199 TCAGTCTGCTTGCTTGCTACCTCAGGAAGATAAGACT-CATTTTTCAACTTGCTCTCTTGCTACC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTACC
*
32823263 TCAGAGAGATAAGGCTTAGTGGTAAGATCTGCTCCATTGC
66 TCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGC
32823303 AACTTTAGGG
Statistics
Matches: 262, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
180 66 0.25
181 188 0.72
182 8 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (181 bp):
TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTACC
TCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCACCA
TCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAATTC
Found at i:32823360 original size:45 final size:43
Alignment explanation
Indices: 32823179--32823365 Score: 116
Period size: 45 Copynumber: 4.2 Consensus size: 43
32823169 GCAATCTTAG
* * * *
32823179 GGAGATAAAATCTTCAATTCTCAGTCTGCTTGCTTGCTACCTCA
1 GGAGATAAGATCTTTAATTCTCAATCTGC-TCCTTGCTACCTCA
*
32823223 GGAAGATAAGACTCATT--TT-TCAA-CTTGCTCTCTTGCTACCTCA
1 GG-AGATAAGA-TCTTTAATTCTCAATC-TGCTC-CTTGCTACCTCA
* * ** * * * *
32823266 GAGAGATAAG-GC-TTAGTGGTAAGATCTGCTCCATTGCAACTTTA
1 G-GAGATAAGATCTTTAATTCTCA-ATCTGCTCC-TTGCTACCTCA
32823310 GGGAGATAAGATCTTTAATTCTCAATCTGCTTCCTTGCTACCTCA
1 -GGAGATAAGATCTTTAATTCTCAATCTGC-TCCTTGCTACCTCA
32823355 TGGAGATAAGA
1 -GGAGATAAGA
32823366 CTACTATCGC
Statistics
Matches: 108, Mismatches: 20, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 3 0.03
43 29 0.27
44 27 0.25
45 34 0.31
46 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (43 bp):
GGAGATAAGATCTTTAATTCTCAATCTGCTCCTTGCTACCTCA
Found at i:32823473 original size:133 final size:133
Alignment explanation
Indices: 32823289--32823629 Score: 454
Period size: 133 Copynumber: 2.6 Consensus size: 133
32823279 TAGTGGTAAG
* * * ** *
32823289 ATCTGCTCCATTGCAACTTTAGGGAGATAAGATCT-TTAATTCTCAATCTGCTTCCTTGCTACCT
1 ATCTGCTCCACTACTAC-TTAGGGAGATAAGATCTACAAATTC-CAGTCTGCTTCCTTGCTACCT
* * *
32823353 CATGG-AGATAAGACTACTATCGCCAATCTGCTCCATTGTCGATACATGGAGATAAGATTTACTA
64 CA-GGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTA
*
32823417 TTTTTA
128 TCTTTA
* *
32823423 ATCTGCTCTACTACTACTTAGGGAGATGAA-ATCTGCAAATTCCAGTCTGCTTCCTTGCTACCTC
1 ATCTGCTCCACTACTACTTAGGGAGAT-AAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTC
* *
32823487 AGGAAGATAAGACTATTATCGCCAGTCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATC
65 AGGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATC
*
32823552 TTTG
130 TTTA
* * * *
32823556 ATTTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAATTCCAGTCTGCTTCCTTGCTATCTCA
1 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTCA
32823621 GGAAGATAA
66 GGAAGATAA
32823630 AACTCATTCT
Statistics
Matches: 183, Mismatches: 20, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
132 4 0.02
133 159 0.87
134 20 0.11
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (133 bp):
ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATCT
TTA
Found at i:32823758 original size:45 final size:44
Alignment explanation
Indices: 32823709--32823807 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 44
32823699 CCAATACATA
* * * * *
32823709 GAGATAAGAT-TCACCATCTTCGATCTGCTCTACTGTAACTTCAGG
1 GAGATAAGATCTCA--ATCTTCAATCTACTCCACTGCAACCTCAGG
32823754 GAGATAAGATCGTCAATCTTCAATCTACTCCACTGCAACCTCAGG
1 GAGATAAGATC-TCAATCTTCAATCTACTCCACTGCAACCTCAGG
32823799 GAGATAAGA
1 GAGATAAGA
32823808 CTTGTTATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 44 0.94
47 3 0.06
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
GAGATAAGATCTCAATCTTCAATCTACTCCACTGCAACCTCAGG
Found at i:32824088 original size:64 final size:64
Alignment explanation
Indices: 32823987--32824181 Score: 336
Period size: 64 Copynumber: 3.0 Consensus size: 64
32823977 TTCATGTATC
* * *
32823987 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
*
32824051 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTA
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
**
32824115 ATGCTTATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCACCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
32824179 ATG
1 ATG
32824182 AACGATATAT
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 124 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
Found at i:32825332 original size:23 final size:22
Alignment explanation
Indices: 32825306--32825349 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32825296 ACTTCTTTGA
**
32825306 TTGATTCTTTTTTTCTTTTTTTT
1 TTGATT-TTTTTTGATTTTTTTT
32825329 TTGATTTTTTTTGATTTTTTT
1 TTGATTTTTTTTGATTTTTTT
32825350 ATTTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.82
Consensus pattern (22 bp):
TTGATTTTTTTTGATTTTTTTT
Found at i:32838673 original size:13 final size:12
Alignment explanation
Indices: 32838655--32838684 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
32838645 AAATCTACTA
32838655 AAAAATAAACAAT
1 AAAAATAAA-AAT
32838668 AAAAATAAAAAT
1 AAAAATAAAAAT
32838680 AAAAA
1 AAAAA
32838685 GTAGTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:32838683 original size:5 final size:6
Alignment explanation
Indices: 32838655--32838684 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
32838645 AAATCTACTA
32838655 AAAAAT AAACAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAA-AAT AAAAAT AAAAAT AAAAA
32838685 GTAGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:32848401 original size:17 final size:19
Alignment explanation
Indices: 32848381--32848415 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
32848371 ATTAATATAT
32848381 TTATTAAA-CTA-ATTAAA
1 TTATTAAAGCTACATTAAA
32848398 TTATTAAAGCTACATTAA
1 TTATTAAAGCTACATTAA
32848416 CTTAAGGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (19 bp):
TTATTAAAGCTACATTAAA
Found at i:32850194 original size:287 final size:288
Alignment explanation
Indices: 32849393--32850204 Score: 1563
Period size: 288 Copynumber: 2.8 Consensus size: 288
32849383 AGCCTTTTGC
32849393 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
32849458 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
32849523 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
32849588 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
196 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
32849653 CCCATCAACACTCAAAAATTTGTTAAAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
32849681 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
32849746 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
32849811 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
32849876 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
196 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
32849941 CCCATCAACACTCAAAAATTTGTT-AAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
32849968 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
** * *
32850033 TGCCTAGAAAACATCGTTAAATGCAGAATGACATAAAATAACTACTATAAGTGACGGCAAGACAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
* *
32850098 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
32850163 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCAT
196 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCAT
32850205 TTAGTAGAAA
Statistics
Matches: 518, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
287 234 0.45
288 284 0.55
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (288 bp):
ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
CCCATCAACACTCAAAAATTTGTTAAAA
Found at i:32850619 original size:24 final size:22
Alignment explanation
Indices: 32850585--32850637 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 22
32850575 TTAATAAGGA
*
32850585 TTATTATATAATTAATTAAGGTT
1 TTATTAAATAATTAATTAA-GTT
32850608 TTAATTAAATAATTAATTAAGTT
1 TT-ATTAAATAATTAATTAAGTT
32850631 TTATTAA
1 TTATTAA
32850638 TTTTAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.18
23 7 0.25
24 16 0.57
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (22 bp):
TTATTAAATAATTAATTAAGTT
Found at i:32851076 original size:18 final size:18
Alignment explanation
Indices: 32851053--32851097 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
32851043 GTAGAAGGAT
32851053 GAAATTGAAATCAATTTC
1 GAAATTGAAATCAATTTC
*
32851071 GAAATTGAGATCAATTTC
1 GAAATTGAAATCAATTTC
32851089 GAAATTGAA
1 GAAATTGAA
32851098 GCTCAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (18 bp):
GAAATTGAAATCAATTTC
Found at i:32851111 original size:19 final size:19
Alignment explanation
Indices: 32851053--32851103 Score: 79
Period size: 18 Copynumber: 2.8 Consensus size: 19
32851043 GTAGAAGGAT
32851053 GAAATTGAA-ATCAATTTC
1 GAAATTGAAGATCAATTTC
32851071 GAAATTG-AGATCAATTTC
1 GAAATTGAAGATCAATTTC
*
32851089 GAAATTGAAGCTCAA
1 GAAATTGAAGATCAA
32851104 ATTTGAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.03
18 23 0.77
19 6 0.20
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (19 bp):
GAAATTGAAGATCAATTTC
Found at i:32852087 original size:132 final size:132
Alignment explanation
Indices: 32851839--32852092 Score: 373
Period size: 132 Copynumber: 1.9 Consensus size: 132
32851829 ATGACACAGC
* * *
32851839 CGTGTGTTCAACAAATTTAGGTTGTTTTTTAGTTCACACGGCCTGACGACACGACCGTGTGACAC
1 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
* * ** * * * * *
32851904 TCGGTTGCATGGCATGTGATTTTTTCATGATTTGGGGACATAACTGTGTGATGGCACAGTGAACT
66 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCACAGTGAACT
32851969 GT
131 GT
* *
32851971 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGGCAACACGGCCGTGTGACAC
1 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
*
32852036 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACGACTGGGTGATGGCAC
66 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCAC
32852093 CACACAGCCT
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 107 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (132 bp):
CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCACAGTGAACT
GT
Found at i:32852309 original size:22 final size:24
Alignment explanation
Indices: 32852284--32852328 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
32852274 TTGTATATAT
32852284 ATTAAATT-AT-TGAATGTTATTG
1 ATTAAATTCATGTGAATGTTATTG
32852306 ATTAAATTGCATGTGAATGTTAT
1 ATTAAATT-CATGTGAATGTTAT
32852329 GGTTTACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (24 bp):
ATTAAATTCATGTGAATGTTATTG
Found at i:32855570 original size:40 final size:40
Alignment explanation
Indices: 32855515--32855698 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
32855505 TATTCGGATG
32855515 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
32855555 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** * *
32855598 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * * *
32855638 ATATCCGGGCTAAAACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
32855678 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
32855699 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
39 13 0.11
40 73 0.60
41 1 0.01
43 34 0.28
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:32855661 original size:83 final size:80
Alignment explanation
Indices: 32855519--32855698 Score: 236
Period size: 83 Copynumber: 2.2 Consensus size: 80
32855509 CGGATGATAT
** * ** **
32855519 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCAAAGGCATTTG
32855584 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTGCTATAC
*
32855602 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAAACCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCAAAGGCATTTG
*
32855667 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAC
*
32855682 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
32855699 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.14
81 1 0.01
83 60 0.69
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCAAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:32861424 original size:10 final size:10
Alignment explanation
Indices: 32861409--32861435 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
32861399 TTAAAAATTG
32861409 CAACATGGAT
1 CAACATGGAT
32861419 CAACATGGAT
1 CAACATGGAT
32861429 CAACATG
1 CAACATG
32861436 CAAATCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (10 bp):
CAACATGGAT
Found at i:32865836 original size:40 final size:40
Alignment explanation
Indices: 32865743--32865960 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
32865733 AAGCCAAGTA
* * *
32865743 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
32865781 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32865821 CCTTTGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32865861 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
32865901 CCTTCATGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
32865942 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32865961 TTATCATCCA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 99 0.65
41 22 0.14
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32874019 original size:40 final size:40
Alignment explanation
Indices: 32873926--32874143 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 40
32873916 AAGCCAAGTA
* * *
32873926 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
32873964 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32874004 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
32874044 CCTTCGGGACTTAGCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
32874084 CCTTCATGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
32874125 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32874144 TTATCATCCA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 12 0.08
39 16 0.10
40 100 0.65
41 22 0.14
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32876535 original size:19 final size:19
Alignment explanation
Indices: 32876511--32876551 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
32876501 ACAAACCAAT
32876511 CATCAACCCTATTACATGC
1 CATCAACCCTATTACATGC
32876530 CATCAACCCTATTACATGC
1 CATCAACCCTATTACATGC
32876549 CAT
1 CAT
32876552 TTATAACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.27
Consensus pattern (19 bp):
CATCAACCCTATTACATGC
Found at i:32877140 original size:41 final size:41
Alignment explanation
Indices: 32877095--32877199 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
32877085 AATCGGCAGG
*
32877095 AAGCCTGCTAGGC-TAAAGGCCTAAT-ATAATACACC-GACTCA
1 AAGCCTGCTAGGCATAAA-GCCTAATAAT-ATACACCAG-CACA
* * *
32877136 AAGCCTGCTAAGCATAAAGCTTAATAATATACATCAGCACA
1 AAGCCTGCTAGGCATAAAGCCTAATAATATACACCAGCACA
*
32877177 AAGCCTGCTAGGCACAAAGCCTA
1 AAGCCTGCTAGGCATAAAGCCTA
32877200 TTAGGCACAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 47 0.87
42 7 0.13
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCTAATAATATACACCAGCACA
Found at i:32877193 original size:16 final size:16
Alignment explanation
Indices: 32877172--32877215 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
32877162 ATATACATCA
32877172 GCACAAAGCCTGCTAG
1 GCACAAAGCCTGCTAG
**
32877188 GCACAAAGCCTATTAG
1 GCACAAAGCCTGCTAG
*
32877204 GCACAAATCCTG
1 GCACAAAGCCTG
32877216 ATAATATACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.16
Consensus pattern (16 bp):
GCACAAAGCCTGCTAG
Found at i:32888153 original size:31 final size:32
Alignment explanation
Indices: 32888115--32888176 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
32888105 CTCGCTGCAA
* *
32888115 TCTGGTGGCTTTGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
32888146 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
32888177 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Done.