Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 109 of 295
Found at i:35675962 original size:11 final size:11
Alignment explanation
Indices: 35675946--35675975 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
35675936 AATGATAAAA
35675946 GTTAATTTGAT
1 GTTAATTTGAT
35675957 GTTAATTTGAT
1 GTTAATTTGAT
*
35675968 ATTAATTT
1 GTTAATTT
35675976 AGATTAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (11 bp):
GTTAATTTGAT
Found at i:35676082 original size:16 final size:16
Alignment explanation
Indices: 35676050--35676092 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
35676040 ATGTGTCTAA
*
35676050 ATTTAATTTTATTTAC
1 ATTTAATATTATTTAC
35676066 AGTTTAATATT-TTTAC
1 A-TTTAATATTATTTAC
35676082 ATTATAATATT
1 ATT-TAATATT
35676093 GTATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 14 0.58
17 8 0.33
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (16 bp):
ATTTAATATTATTTAC
Found at i:35676900 original size:23 final size:23
Alignment explanation
Indices: 35676873--35676919 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
35676863 ATTTTTTGAT
35676873 TTAGTATATATCAAATTAATTTA
1 TTAGTATATATCAAATTAATTTA
*
35676896 TTAGTATATGTCAAATTAATTTA
1 TTAGTATATATCAAATTAATTTA
35676919 T
1 T
35676920 CTTTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (23 bp):
TTAGTATATATCAAATTAATTTA
Found at i:35678116 original size:18 final size:17
Alignment explanation
Indices: 35678089--35678122 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
35678079 TCCCCTTTAT
35678089 CCTTTCCCTTCCCCTTC
1 CCTTTCCCTTCCCCTTC
35678106 CCTTCTCCCTTCCCCTT
1 CCTT-TCCCTTCCCCTT
35678123 GTGTTGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (17 bp):
CCTTTCCCTTCCCCTTC
Found at i:35681085 original size:34 final size:35
Alignment explanation
Indices: 35681027--35681093 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
35681017 CAAACACCAG
35681027 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
35681062 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
35681094 CATTTTACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:35691105 original size:22 final size:23
Alignment explanation
Indices: 35691080--35691125 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
35691070 CAACCAAACC
35691080 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
35691102 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
35691125 A
1 A
35691126 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:35691131 original size:23 final size:23
Alignment explanation
Indices: 35691087--35691131 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
35691077 ACCAATTCAA
*
35691087 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
35691110 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
35691132 CACATGCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:35707844 original size:42 final size:42
Alignment explanation
Indices: 35707755--35707900 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 42
35707745 TATCCCAGAT
* * *
35707755 ATGGTCTTACATGTTATAGT-ATATCGATACCAATAGCCC-AGC
1 ATGGTCTTACATG-AATA-TCATATCGATGCCAATAGCCCAAAC
* *
35707797 TATGGTCTTACGTGAATCTCATATCGATGCCAAT-GCCCTAAAC
1 -ATGGTCTTACATGAATATCATATCGATGCCAATAGCCC-AAAC
* * *
35707840 ATGGTCTTACACGAATATCATATCGATGCCAATATCCCAGAC
1 ATGGTCTTACATGAATATCATATCGATGCCAATAGCCCAAAC
35707882 ATGGTCTTACATGAA-ATCA
1 ATGGTCTTACATGAATATCA
35707901 CATTCCGATA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
41 9 0.10
42 62 0.70
43 17 0.19
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACATGAATATCATATCGATGCCAATAGCCCAAAC
Found at i:35711594 original size:25 final size:26
Alignment explanation
Indices: 35711558--35711608 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
35711548 ATTGTGGTCC
35711558 CAAAACCTAACATATTTTTGGAACAA
1 CAAAACCTAACATATTTTTGGAACAA
*
35711584 CAAAA-CTAACATATTTTTGTAACAA
1 CAAAACCTAACATATTTTTGGAACAA
35711609 TTTCATCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (26 bp):
CAAAACCTAACATATTTTTGGAACAA
Found at i:35713028 original size:24 final size:24
Alignment explanation
Indices: 35712996--35713048 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
35712986 AAGTCTGTCA
*
35712996 GGAGAGGATTTAGGAGCTGGTAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
35713020 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
35713044 GGAGA
1 GGAGA
35713049 ATAGTGTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.45, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:35714555 original size:26 final size:26
Alignment explanation
Indices: 35714448--35714558 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
35714438 AGGAAGCGTC
*
35714448 CTGGTGGCTATGCCACAATTATCTGA-T
1 CTGGTGGCTCTGCCAC-ATTATCT-ATT
*
35714475 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTATT
35714502 CTGGTGGCTCTGCCACGATTATCTATT
1 CTGGTGGCTCTGCCAC-ATTATCTATT
* *
35714529 CTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTATT
35714555 CTGG
1 CTGG
35714559 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTATT
Found at i:35722860 original size:17 final size:18
Alignment explanation
Indices: 35722823--35722860 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
35722813 CCCCAGGGAG
35722823 AAAAACTCGATTTAGCAA
1 AAAAACTCGATTTAGCAA
35722841 AAAAACTC-AGTTTAGCAA
1 AAAAACTCGA-TTTAGCAA
35722859 AA
1 AA
35722861 CCTCTATCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.53, C:0.16, G:0.11, T:0.21
Consensus pattern (18 bp):
AAAAACTCGATTTAGCAA
Found at i:35725801 original size:24 final size:24
Alignment explanation
Indices: 35725768--35725824 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
35725758 CTAGAGGCCT
*
35725768 AGCCTCTTTTAAT-GACTAGGGCAA
1 AGCCT-TTTTAATAAACTAGGGCAA
*
35725792 AGCCCTTTTTGATAAACTAGGGCAA
1 AG-CCTTTTTAATAAACTAGGGCAA
35725817 AGCCTTTT
1 AGCCTTTT
35725825 CGGTAAACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (24 bp):
AGCCTTTTTAATAAACTAGGGCAA
Found at i:35725810 original size:25 final size:25
Alignment explanation
Indices: 35725782--35725845 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
35725772 TCTTTTAATG
*
35725782 ACTAGGGCAAAGCCCTTTTTGATAA
1 ACTAGGGCAAAGCCCTTTTCGATAA
*
35725807 ACTAGGGCAAAG-CCTTTTCGGTAA
1 ACTAGGGCAAAGCCCTTTTCGATAA
* *
35725831 ACTGGGGCATAGCCC
1 ACTAGGGCAAAGCCC
35725846 CTTTAGCACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 20 0.59
25 14 0.41
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (25 bp):
ACTAGGGCAAAGCCCTTTTCGATAA
Found at i:35726089 original size:27 final size:27
Alignment explanation
Indices: 35726054--35726190 Score: 157
Period size: 27 Copynumber: 5.1 Consensus size: 27
35726044 GGCAAAATGG
* * * *
35726054 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * * * * *
35726081 TTATTTTACCCCATAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
35726108 TAATTCTATCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
35726135 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
35726162 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
35726189 TA
1 TA
35726191 TTTTACAAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:35726135 original size:54 final size:54
Alignment explanation
Indices: 35726052--35726196 Score: 184
Period size: 54 Copynumber: 2.7 Consensus size: 54
35726042 GGGGCAAAAT
* * * * *
35726052 GGTAATTTTACCCCACAAGGGTATCTCGATTATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATTATTTTACCCCACAAGGGTATCTC
* * * * * *
35726106 GGTAATTCTATCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATTATTTTACCCCACAAGGGTATCTC
35726160 GGTAATTCTACCCTACAGGGGTATTTCGA-TATTTTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGATTATTTTAC
35726197 AAATTGAGAG
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 6 0.08
54 71 0.92
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGATTATTTTACCCCACAAGGGTATCTC
Found at i:35726263 original size:27 final size:27
Alignment explanation
Indices: 35726190--35726303 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
35726180 GTATTTCGAT
* * *
35726190 ATTTTACAAATTGAGAGTATTTTTGATA
1 ATTTTACAAATAGAGGGTA-TTTTGGTA
* *
35726218 ATTTCACAAATCA-ATGGTATTTTGGTA
1 ATTTTACAAAT-AGAGGGTATTTTGGTA
35726245 ATTTTACAAACTAG-GGGTATTTTGGTA
1 ATTTTACAAA-TAGAGGGTATTTTGGTA
** *
35726272 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAATAGAGGGTATTTTGGTA
35726299 ATTTT
1 ATTTT
35726304 GTAAACCAAG
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.76
28 15 0.21
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.45
Consensus pattern (27 bp):
ATTTTACAAATAGAGGGTATTTTGGTA
Found at i:35726315 original size:27 final size:27
Alignment explanation
Indices: 35726233--35726344 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
35726223 ACAAATCAAT
** * *
35726233 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTGTAAACCAAG
* * * *
35726260 GGTATTTTGGTAATTTTACT-GATCGAG
1 GGTATTTTGGTAATTTT-GTAAACCAAG
35726287 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTGTAAACCAAG
* ** * *
35726314 GGTGTTTCAGTAATTTTGTAAATCGAG
1 GGTATTTTGGTAATTTTGTAAACCAAG
35726341 GGTA
1 GGTA
35726345 AAACAGTAAT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTGTAAACCAAG
Found at i:35726490 original size:27 final size:27
Alignment explanation
Indices: 35726323--35726479 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
35726313 GGGTGTTTCA
* *
35726323 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
35726350 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35726377 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
35726404 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35726431 GTAATTCTATAAATCGAGGGTAAAGCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
35726458 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
35726480 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:35730524 original size:46 final size:46
Alignment explanation
Indices: 35730452--35730539 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
35730442 CGTTAGCTGC
35730452 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
1 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
* *
35730498 ATCACGATCCTCTTTAAGTTTGGTGGCATAGAAAAGTACAGA
1 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGA
35730540 CTTTCTGGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (46 bp):
ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
Found at i:35735714 original size:37 final size:37
Alignment explanation
Indices: 35735664--35735736 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
35735654 CATAAAAGTG
*
35735664 TGCGGGAAAGATAAGTCCGTTGACTTTCACTAATACC
1 TGCGGGAAAGATAAGCCCGTTGACTTTCACTAATACC
35735701 TGCGGGAAAGATAAGCCCGTTGACTTTCACTAATAC
1 TGCGGGAAAGATAAGCCCGTTGACTTTCACTAATAC
35735737 ATCCTCAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (37 bp):
TGCGGGAAAGATAAGCCCGTTGACTTTCACTAATACC
Found at i:35757803 original size:42 final size:42
Alignment explanation
Indices: 35757743--35757905 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
35757733 AGGGTTACTA
*
35757743 AGATTTCGTGTAAGACCATATCTGGGATATTGCATTGATATG
1 AGATTTCATGTAAGACCATATCTGGGATATTGCATTGATATG
* *
35757785 GGATTTCGTGTAAGACCATATCTGGGATA-TGACATTGATATG
1 AGATTTCATGTAAGACCATATCTGGGATATTG-CATTGATATG
* * * ** *
35757827 AGATTTCATGTAAGATCATAGCTGGGCTATTGGCATCAATACG
1 AGATTTCATGTAAGACCATATCTGGGATATT-GCATTGATATG
* * *
35757870 AGATTACATGTAAGACCATATCTCGGATATGGCATT
1 AGATTTCATGTAAGACCATATCTGGGATATTGCATT
35757906 AGTACAATAC
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.02
42 66 0.65
43 33 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
AGATTTCATGTAAGACCATATCTGGGATATTGCATTGATATG
Found at i:35764848 original size:42 final size:42
Alignment explanation
Indices: 35764786--35764947 Score: 225
Period size: 42 Copynumber: 3.8 Consensus size: 42
35764776 AGGGTTACTA
* *
35764786 AGATTTCGTGTAAGATCATATCTGGGATATGGCATCGAGATG
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
*
35764828 AGATTTCGTGTAAGACCATATCTGGGATATGACATCGATATG
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * * * *
35764870 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGTATTGATACG
1 AGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
* *
35764913 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCAT
35764948 TGGTACGATA
Statistics
Matches: 105, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 71 0.68
43 34 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:35764934 original size:85 final size:84
Alignment explanation
Indices: 35764786--35764943 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
35764776 AGGGTTACTA
* * * * *
35764786 AGATTTCGTGTAAGATCATATCTGGGATATGGCATCGAGATGAGATTTCGTGTAAGACCATATCT
1 AGATTTCGTGTAAGACCATAGCTGGGATATGGCATCGAGACGAGATTACATGTAAGACCATATCT
35764851 GGGATATGACATCGATATG
66 GGGATATGACATCGATATG
* * * *
35764870 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGTATTGATACGAGATTACATGTAAGACCATATC
1 AGATTTCGTGTAAGACCATAGCTGGGATA-TGGCATCGAGACGAGATTACATGTAAGACCATATC
35764935 TGGGATATG
65 TGGGATATG
35764944 GCATTGGTAC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 26 0.41
85 38 0.59
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (84 bp):
AGATTTCGTGTAAGACCATAGCTGGGATATGGCATCGAGACGAGATTACATGTAAGACCATATCT
GGGATATGACATCGATATG
Found at i:35766706 original size:44 final size:40
Alignment explanation
Indices: 35766574--35766721 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 40
35766564 CTTAGACATA
* *
35766574 GTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGACAGG
1 GTCTTACACGAAATC-AA-ATCGATGCCAAC-ATCCCAGAC-GG
* ** * *
35766617 GTCTTACACGAAATCAAATACAATGCCAATGTCCTAGACACG
1 GTCTTACACGAAATCAAAT-CGATGCCAACATCCCAGAC-GG
*
35766659 GTCTTACATGTAAATATCAAATCGATGCCAACATCCCAGACGTG
1 GTCTTACACG--AA-ATCAAATCGATGCCAACATCCCAGACG-G
35766703 GTCTTACACGAAATCAAAT
1 GTCTTACACGAAATCAAAT
35766722 ATCAAAAATC
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
41 9 0.11
42 28 0.33
43 14 0.16
44 27 0.32
45 7 0.08
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (40 bp):
GTCTTACACGAAATCAAATCGATGCCAACATCCCAGACGG
Found at i:35766712 original size:86 final size:85
Alignment explanation
Indices: 35766550--35766722 Score: 237
Period size: 86 Copynumber: 2.0 Consensus size: 85
35766540 GGAAAGCTCG
* *
35766550 TACAATGCCAACGTCTTAGACATAGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
1 TACAATGCCAACGTCCTAGACACAGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
35766615 GGGTCTTACACGAAATCAAA
66 GGGTCTTACACGAAATCAAA
* *
35766635 TACAATGCCAATGTCCTAGACACGGTCTTACATGTAAAT-ATCAA-ATCGATGCCAAC-ATCCCA
1 TACAATGCCAACGTCCTAGACACAGTCTTACATGT-AATCA--AATATCGATGCC-ACTATCCCA
35766697 GAC-GTGGTCTTACACGAAATCAAA
62 GACAG-GGTCTTACACGAAATCAAA
35766721 TA
1 TA
35766723 TCAAAAATCC
Statistics
Matches: 79, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
85 33 0.42
86 42 0.53
87 4 0.05
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (85 bp):
TACAATGCCAACGTCCTAGACACAGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
GGGTCTTACACGAAATCAAA
Found at i:35771007 original size:48 final size:48
Alignment explanation
Indices: 35770947--35771267 Score: 320
Period size: 48 Copynumber: 6.7 Consensus size: 48
35770937 ATATTTTGGT
* * **
35770947 GCCGATACCATGTTCCAAACATGGTCTTACTCTAGCTCACATATTGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * *
35770995 GCCGATGCCATG-TCTCAGACATGGTCTTACAGTAGCTCTCATATAAAT
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACATATAAAG
* * * * * *
35771043 GCCAATTCCATATTCCAAACATGGTCTTACATTGGCTCACATATCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
** * * * *
35771091 GCCGATGCCATGCCCCAGACATGGTCTTACGCTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * * *
35771139 GCCAATTCCATGTTCCAAATATGGTCTTACACTGGCTCACATATCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
** * ** *
35771187 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTTATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * *
35771235 GTCAATGCCATGTTCCAAATATGGTCTTACACT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACT
35771268 GGTTCAGATA
Statistics
Matches: 214, Mismatches: 57, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
47 2 0.01
48 210 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
Found at i:35771266 original size:96 final size:96
Alignment explanation
Indices: 35770897--35771269 Score: 503
Period size: 96 Copynumber: 3.9 Consensus size: 96
35770887 AGGGAAAGAT
* * * * * *** * *
35770897 GCCGATGCCATGTCCCAGACACGGTTTTATACTGGCTCTCATATTTTGGTGCCGATACCATGTTC
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATA--TAAATGCCAATTCCATGTTC
* * **
35770962 CAAACATGGTCTTACTCTAGCTCACATATTGAG
64 CAAACATGGTCTTACACTGGCTCACATATCAAG
* * * *
35770995 GCCGATGCCATGTCTCAGACATGGTCTTACAGTAGCTCTCATATAAATGCCAATTCCATATTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
35771060 AACATGGTCTTACATTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
*
35771091 GCCGATGCCATGCCCCAGACATGGTCTTACGCTAGCTCTCATATAAATGCCAATTCCATGTTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
35771156 AATATGGTCTTACACTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
* * *
35771187 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCAATGCCATGTTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
35771252 AATATGGTCTTACACTGG
66 AACATGGTCTTACACTGG
35771270 TTCAGATAAC
Statistics
Matches: 247, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 210 0.85
98 37 0.15
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCAAG
Found at i:35778707 original size:16 final size:16
Alignment explanation
Indices: 35778686--35778725 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
35778676 TGACATAGGA
*
35778686 AAATTTTTAAACTTTT
1 AAATTTTTAAAATTTT
35778702 AAATTTTTAAAATTTT
1 AAATTTTTAAAATTTT
*
35778718 AAGTTTTT
1 AAATTTTT
35778726 CTGTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (16 bp):
AAATTTTTAAAATTTT
Found at i:35778725 original size:8 final size:8
Alignment explanation
Indices: 35778686--35778725 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
35778676 TGACATAGGA
35778686 AAATTTTT
1 AAATTTTT
*
35778694 AAACTTTT
1 AAATTTTT
35778702 AAATTTTT
1 AAATTTTT
*
35778710 AAAATTTT
1 AAATTTTT
*
35778718 AAGTTTTT
1 AAATTTTT
35778726 CTGTTATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (8 bp):
AAATTTTT
Found at i:35780667 original size:28 final size:28
Alignment explanation
Indices: 35780616--35780676 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
35780606 AGGAGATTCC
* *
35780616 ATTAAGTTATTTTAGACTACTTAATTTA
1 ATTAGGTTATTTTAGACTAATTAATTTA
* **
35780644 GTTAGGTTATTTTAGTTTAATTAATTTA
1 ATTAGGTTATTTTAGACTAATTAATTTA
35780672 ATTAG
1 ATTAG
35780677 TTTAATTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52
Consensus pattern (28 bp):
ATTAGGTTATTTTAGACTAATTAATTTA
Found at i:35781644 original size:21 final size:21
Alignment explanation
Indices: 35781620--35781661 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
35781610 TTGATTTGAC
* * *
35781620 TTTTTTAGAATTTATTTTTAT
1 TTTTTTAAAATTCATATTTAT
35781641 TTTTTTAAAATTCATATTTAT
1 TTTTTTAAAATTCATATTTAT
35781662 AAATTTATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTAAAATTCATATTTAT
Found at i:35785122 original size:26 final size:26
Alignment explanation
Indices: 35785091--35785143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35785081 AGAGATAAGC
35785091 GGTTAGAAAATACAGAGCGCAAGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
* *
35785117 GGTTAGAAAATACAGAGTGCATGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
35785143 G
1 G
35785144 CCTTTTTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (26 bp):
GGTTAGAAAATACAGAGCGCAAGTAT
Found at i:35791409 original size:41 final size:41
Alignment explanation
Indices: 35791334--35791411 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
35791324 ATAGTGATAT
*
35791334 TCGGGCTTTAAGCCTAGCAAGCATTGTGCTGGTGAATGTAA
1 TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
* * *
35791375 TCGGGCTTTATGCCTAGCAGGC-TTATTGCCGGTGAAT
1 TCGGGCTTTAAGCCTAGCAAGCATT-GTGCCGGTGAAT
35791412 ATAAAATCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.06
41 30 0.94
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
Found at i:35793797 original size:48 final size:48
Alignment explanation
Indices: 35793712--35794144 Score: 390
Period size: 48 Copynumber: 9.0 Consensus size: 48
35793702 TGACATTGGG
* * * *
35793712 TGATATGTGTGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAA
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * **
35793760 TGTTATGAGAGCCAGTGTAAGACCATGT-TCGGGACATGGCATCAGCGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCAGCAA
* * * * **
35793808 TGATAGGTGCGCTAGTGTAAGACCATATCCGGGACATGGCATCAGCGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * **
35793856 TGATAGGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* *
35793904 TGATAGGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-A
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * * *
35793951 TCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGACAACGGCCA
1 T-GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * *
35794000 T-ATTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGTATC-GACAT
1 TGA-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CAA
* * * * * *
35794048 TGAGACGAGAGCTAGTTTAAGACCATGTCTGGGACATGGCATCGGC-C
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * *
35794095 TCGACATGTGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCAACAA
1 T-GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
35794144 T
1 T
35794145 TTACCCTCTT
Statistics
Matches: 322, Mismatches: 53, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
47 5 0.02
48 312 0.97
49 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
Found at i:35793972 original size:144 final size:144
Alignment explanation
Indices: 35793722--35794139 Score: 462
Period size: 144 Copynumber: 2.9 Consensus size: 144
35793712 TGATATGTGT
* * * * * * *
35793722 GCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGAGCTAGTGTAAGACCATG
* * * * *
35793787 T-TCGGGACATGGCATCAGCGTTGATAGGTGCGCTAGTGTAAGACCATATCCGGGACATGGCATC
66 TCT-GGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATC
** * *
35793851 AGCGTTGA-TAGGTGC
130 AGCCAT-ATTAGGAGA
* * * * *
35793866 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTTTGATAGGTGTGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGAGCTAGTGTAAGACCATG
* * * *
35793931 TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGACAACG
66 TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
*
35793996 GCCATATTATGAGA
131 GCCATATTAGGAGA
* * * * *
35794010 GCCAATGTAAGACCATGTCTGGGACATGGTATCGACATTGAGACGAGAGCTAGTTTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGAGCTAGTGTAAGACCATG
* * * * * * *
35794075 TCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCA
66 TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
35794140 ACAATTTACC
Statistics
Matches: 226, Mismatches: 46, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
143 1 0.00
144 224 0.99
145 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
GCCATATTAGGAGA
Found at i:35803390 original size:18 final size:16
Alignment explanation
Indices: 35803353--35803392 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
35803343 TCCCATGGAG
*
35803353 ACACACTAGGTCGAAT
1 ACACACTAGGTCGAAA
35803369 ACACACTAGGTCAGATAA
1 ACACACTAGGTC-GA-AA
35803387 ACACAC
1 ACACAC
35803393 GGTCTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
17 2 0.10
18 7 0.33
ACGTcount: A:0.42, C:0.28, G:0.15, T:0.15
Consensus pattern (16 bp):
ACACACTAGGTCGAAA
Found at i:35809556 original size:120 final size:121
Alignment explanation
Indices: 35809394--35809616 Score: 331
Period size: 122 Copynumber: 1.8 Consensus size: 121
35809384 CACAATAACA
* * * *
35809394 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAAT-CTCAATTTAACACGGAATG
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATCTAACACGAAATG
*
35809458 TATGATAACTAACCTAGGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
66 TATGATAACTAACCTAAGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
* * * **
35809514 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATCTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT-ACTCAATCTAACACGAAAT
*
35809579 GTATGATAACTAACCTAAGAATGTAAATTAAATGATAG
65 GTATGATAACTAACCTAAGAATGCAAATTAAATGATAG
35809617 AAAAATGAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 40 0.44
122 50 0.56
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (121 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATCTAACACGAAATG
TATGATAACTAACCTAAGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
Found at i:35816888 original size:51 final size:51
Alignment explanation
Indices: 35816789--35816888 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
35816779 AGGATGCAAG
* * * *
35816789 CATCCGAGCTCGTTGAGTGGTTAGAGTTCATAATGGATGTGATTCATGTAA
1 CATCCGAGCTCGTTGAGAGGTCAGAGTTCATAATGGATGTAATACATGTAA
* * *
35816840 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATTGGCTG-AATACATGT
1 CATCCGAGCTCGTTGAGAGGTCAGAGTTCA-TAATGGATGTAATACATGT
35816889 TTTGAGGTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
51 34 0.83
52 7 0.17
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCAGAGTTCATAATGGATGTAATACATGTAA
Found at i:35823854 original size:42 final size:43
Alignment explanation
Indices: 35823741--35823854 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
35823731 AGAATTTAGA
* * *
35823741 AATCTGAACTCGTTGAGCGGTCCGAGTTCGTGATATATGTGAG
1 AATCCGAACTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAG
* * *
35823784 AATCCGAACTTGTTGAGTGGTCCAAGTTCGTGATCTATGTG-G
1 AATCCGAACTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAG
*
35823826 CATCC-AAGCTTGTTGAGAGGTCCGAGTTC
1 AATCCGAA-CTTGTTGAGAGGTCCGAGTTC
35823855 ATTATGGATG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.03
42 24 0.39
43 36 0.58
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (43 bp):
AATCCGAACTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAG
Found at i:35823866 original size:42 final size:43
Alignment explanation
Indices: 35823752--35823907 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
35823742 ATCTGAACTC
* * ** *
35823752 GTTGAGCGGTCCGAGTTCGTGATATATGTGAGAATCCGAA-CTT
1 GTTGAGAGGTCCGAGTTCATGATGGATGTGAGCATCC-AAGCTT
* * * **
35823795 GTTGAGTGGTCCAAGTTCGTGATCTATGTG-GCATCCAAGCTT
1 GTTGAGAGGTCCGAGTTCATGATGGATGTGAGCATCCAAGCTT
* * *
35823837 GTTGAGAGGTCCGAGTTCATTATGGATGTGAGCAT-TAGAGCTC
1 GTTGAGAGGTCCGAGTTCATGATGGATGTGAGCATCCA-AGCTT
*
35823880 GTTGA-ATGGTCCGAGTTCATAATGGATG
1 GTTGAGA-GGTCCGAGTTCATGATGGATG
35823908 CGATTCATGT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 34 0.35
43 60 0.62
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.31
Consensus pattern (43 bp):
GTTGAGAGGTCCGAGTTCATGATGGATGTGAGCATCCAAGCTT
Found at i:35826443 original size:34 final size:34
Alignment explanation
Indices: 35826348--35826431 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
35826338 CAGTATTAGT
* * ** *
35826348 TAGGCCTTAGCCTATTTCTTTAATAGTAACAGTC
1 TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
* *
35826382 TGGGCCTAAGCCCATTTCAGTAACAGTAATAGTC
1 TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
35826416 TAGGCCTAAGCCCATT
1 TAGGCCTAAGCCCATT
35826432 AATATATCAG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (34 bp):
TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
Found at i:35832120 original size:48 final size:48
Alignment explanation
Indices: 35832068--35832428 Score: 343
Period size: 48 Copynumber: 7.5 Consensus size: 48
35832058 TAAGAGCCAA
* * *
35832068 TGTAAGACCATGTCTGGAACATTGCATTGGCATTGATAGGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
* *
35832116 TGTAAGACCATGTCCGGGACATGGCATCGGCGTTGATAGGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
* * * * *
35832164 TGTAAGACCATGTATGGGACATGGCATCGACGTCGATATGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
* * * *
35832212 TGTAAGACCATGTCTGGGACACGACAAT-GGTCATATTAT-GAGAGC-C-AG
1 TGTAAGACCATGTCTGGGACATGGC-ATCGG-CAT-TGATAG-GTGCGCTAG
* * *
35832260 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
* * * ** * * ** *
35832308 TGTAAGTCCATGTCTGGGACATGGCATCAGCCTCAACATGTGATCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
* * * * * * *
35832356 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
*
35832404 CGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
35832429 GTCGACAATT
Statistics
Matches: 267, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
46 6 0.02
47 6 0.02
48 245 0.92
49 5 0.02
50 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGGTGCGCTAG
Found at i:35832207 original size:96 final size:93
Alignment explanation
Indices: 35832008--35832428 Score: 355
Period size: 96 Copynumber: 4.4 Consensus size: 93
35831998 CATTGGGTGC
* * * * * *
35832008 TATGTGTGCCAGTGTAAGACCATGT-TCGGAACATGGCATCGACAATGTTATAAGAGCCAATGTA
1 TATGTGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGC---GTTATAGGAGCCAGTGTA
* * * * *
35832072 AGACCATGTCTGGAACATTGCATTGGCATTGA
62 AGACCATGTCTGGGACATGGCATCGACATCGA
* * * *
35832104 TAGGTGCGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTT-ATAGGAGC-C-AGTGTAA
* *
35832169 GACCATGTATGGGACATGGCATCGACGTCGA
63 GACCATGTCTGGGACATGGCATCGACATCGA
* * * *
35832200 TATGTGCGCTAGTGTAAGACCATGTCTGGGACACGACAAT-GGTC-ATATTATGAGAGCCAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGC-ATCGG-CGTTA-TA-G-GAGCCAGTGT
* *
35832263 AAGACCATGTCTGGGACATGGCATCGGCATTGA
61 AAGACCATGTCTGGGACATGGCATCGACATCGA
* * * * * * * *
35832296 TACGAGAGCTAGTGTAAGTCCATGTCTGGGACATGGCATCAGCCTCAACATGTGATCCAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT-TATA-G-GAGCCAGTGTAA
*
35832361 GACCATGTCTGGGACATGGCATC-AGCCTCGA
63 GACCATGTCTGGGACATGGCATCGA-CATCGA
* * *
35832392 CATGTGAGCCAGCGTAAGACCATGTCTGGGACATGGC
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGC
35832429 GTCGACAATT
Statistics
Matches: 265, Mismatches: 47, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
93 3 0.01
94 6 0.02
95 5 0.02
96 242 0.91
97 6 0.02
98 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTATAGGAGCCAGTGTAAGAC
CATGTCTGGGACATGGCATCGACATCGA
Found at i:35832401 original size:144 final size:143
Alignment explanation
Indices: 35832061--35832428 Score: 409
Period size: 144 Copynumber: 2.6 Consensus size: 143
35832051 AATGTTATAA
* * * * * * * *
35832061 GAGCCAATGTAAGACCATGTCTGGAACATTGCATTGGCATTGATAGGTGCGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TAGCATCGATATGTGAGCCAGTGTAAGACCA
* * * * *
35832126 TGTCCGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTATGGGACATGGCAT
65 TGTCTGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTATGGGACATGGCAT
* * *
35832191 CGACGTCGATATGT
130 CGACCTCAACATGT
* * * * * *
35832205 GCGCTAGTGTAAGACCATGTCTGGGACACGACAATGGTCAT--ATTATGAGAGCCAGTGTAAGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC-ATAG-CATCGA-TATGTGAGCCAGTGTAAGAC
* *
35832268 CATGTCTGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGTCCATGTCTGGGACATGGC
63 CATGTCTGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTATGGGACATGGC
35832333 ATC-AGCCTCAACATGT
128 ATCGA-CCTCAACATGT
* * * *
35832349 GATCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAGCGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGCATCGATATGTGAGCCAGTGTAAGACCA
35832414 TGTCTGGGACATGGC
65 TGTCTGGGACATGGC
35832429 GTCGACAATT
Statistics
Matches: 186, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
143 6 0.03
144 175 0.94
145 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (143 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGCATCGATATGTGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATC
GACCTCAACATGT
Found at i:35835838 original size:44 final size:44
Alignment explanation
Indices: 35835772--35835856 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 44
35835762 TATATATGAG
35835772 GCATCCGAACTCATTGCATTGGTCCGAGTTCACT-ATGGATGTGA
1 GCATCCGAACTCATTGCATTGGTCCGAGTTCA-TAATGGATGTGA
*
35835816 GCATCCGAACTCGTTG-AGTTGGTCCGAGTTCATAATGGATG
1 GCATCCGAACTCATTGCA-TTGGTCCGAGTTCATAATGGATG
35835857 CAATGCATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (44 bp):
GCATCCGAACTCATTGCATTGGTCCGAGTTCATAATGGATGTGA
Found at i:35843825 original size:44 final size:45
Alignment explanation
Indices: 35843743--35843835 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
35843733 TATATATGAG
* *
35843743 GCATCTGAACTCGTTGAGTTGGTCTGAGTTCACTATGGATACGA-
1 GCATCTGAACTCGTTGAGTTGGTCCGACTTCACTATGGATACGAT
* *
35843787 GCATCTGAACTTGTTGAGTTGGTCCGACTTCA-TAATGGATGCGAT
1 GCATCTGAACTCGTTGAGTTGGTCCGACTTCACT-ATGGATACGAT
35843832 GCAT
1 GCAT
35843836 GTAATTGAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 38 0.88
45 4 0.09
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (45 bp):
GCATCTGAACTCGTTGAGTTGGTCCGACTTCACTATGGATACGAT
Found at i:35848642 original size:25 final size:25
Alignment explanation
Indices: 35848614--35848662 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
35848604 AAGAAATCAT
*
35848614 ATTATATAATAAGGTTAA-ATATGTA
1 ATTAAATAATAA-GTTAATATATGTA
35848639 ATTAAATAATAAGTTAATATATGT
1 ATTAAATAATAAGTTAATATATGT
35848663 TATAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTAAATAATAAGTTAATATATGTA
Found at i:35849666 original size:35 final size:35
Alignment explanation
Indices: 35849620--35849691 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
35849610 TGATTACATG
* * *
35849620 TAAGACCACGTCTTAGACGTTGGCATTGTATGATA
1 TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
*
35849655 TAAGACAACGTCTGGGACGCTGGCATTGTATGATA
1 TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
35849690 TA
1 TA
35849692 TGTTTCGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (35 bp):
TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
Found at i:35851548 original size:29 final size:29
Alignment explanation
Indices: 35851428--35851547 Score: 145
Period size: 29 Copynumber: 4.2 Consensus size: 29
35851418 TACATACATG
*
35851428 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
35851456 CATATGGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* * * * *
35851485 CCTATGGCTCATCAGGCCGAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* *
35851514 CATATAGCCCATTAGGCCCTAATCAT-ATT
1 CATATGGCCCATTAGGCCCAAATC-TCATT
35851543 CATAT
1 CATAT
35851548 ACATGCTTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
28 18 0.23
29 59 0.77
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:35854503 original size:27 final size:27
Alignment explanation
Indices: 35854472--35854617 Score: 125
Period size: 27 Copynumber: 5.4 Consensus size: 27
35854462 AGACTACTTT
* * *
35854472 AGTTTATCAAATTACTGAAATACCCCC
1 AGTTTATAAAATTACCGAAATACCCTC
* *
35854499 AGTTTATAAAATTACCCAAATATCCTC
1 AGTTTATAAAATTACCGAAATACCCTC
*
35854526 -GATTTGTAAAATTACCGAAATACCCTC
1 AG-TTTATAAAATTACCGAAATACCCTC
** **
35854553 AGTTTGCAAAATTACTAAAATACCCTC
1 AGTTTATAAAATTACCGAAATACCCTC
** *
35854580 AACTTGTAAAATTACC-AAAGTACCCTC
1 AGTTTATAAAATTACCGAAA-TACCCTC
* *
35854607 AATTTACAAAA
1 AGTTTATAAAA
35854618 ATACTGTTTA
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.04
27 93 0.95
28 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AGTTTATAAAATTACCGAAATACCCTC
Found at i:35854564 original size:54 final size:54
Alignment explanation
Indices: 35854480--35854617 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
35854470 TTAGTTTATC
* * * * * * *
35854480 AAATTACTGAAATACCCCCAGTTTATAAAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCAACTTGTA
* *
35854534 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCAACTTGTA
1 AAATTACCGAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCAACTTGTA
*
35854588 AAATTACC-AAAGTACCCTCAATTTACAAAA
1 AAATTACCGAAA-TACCCTCAGTTTACAAAA
35854618 ATACTGTTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.04
54 69 0.96
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCAACTTGTA
Found at i:35854631 original size:27 final size:27
Alignment explanation
Indices: 35854600--35854847 Score: 291
Period size: 27 Copynumber: 9.2 Consensus size: 27
35854590 ATTACCAAAG
* * *
35854600 TACCCTCAATTTACAAAAATACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
35854627 AACCCTCGATTTATAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
*
35854654 TACCATCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
35854681 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
35854708 TACCTTCGATTGACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
35854735 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
35854762 TACCCTCGATTTACAACATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** * **
35854789 TACCCTCGATTTGTAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
35854816 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
35854843 TACCC
1 TACCC
35854848 CTAGGGTGTT
Statistics
Matches: 188, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 186 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:35854817 original size:54 final size:54
Alignment explanation
Indices: 35854522--35854847 Score: 332
Period size: 54 Copynumber: 6.0 Consensus size: 54
35854512 ACCCAAATAT
* ** * ***
35854522 CCTCGATTTGTAAAATTACCGA-AATACCCTC-AGTTTGCAAAATTACTAAAATAC
1 CCTCGATTTATAAAATTACC-ATTTTACCCTCGA-TTTACAAAATTACTATTTTAC
* * * *** * * * *
35854576 CCTCAACTTGTAAAATTACCAAAGTACCCTCAATTTACAAAAATACTGTTTAAC
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
* *
35854630 CCTCGATTTATAAAATTATCATTTTACCATCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
* * *
35854684 CCTCGATTTATAAAATTACCATTTTACCTTCGATTGACAAAATTATTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
* * * * *
35854738 CCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAACATTATTGTTTTAC
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
* * * * *
35854792 CCTCGATTTGTAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
35854846 CC
1 CC
35854848 CTAGGGTGTT
Statistics
Matches: 228, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
53 1 0.00
54 226 0.99
55 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (54 bp):
CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTAC
Found at i:35855203 original size:26 final size:27
Alignment explanation
Indices: 35855174--35855233 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
35855164 CCACATATAT
*
35855174 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
35855200 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
35855227 ATATCTG
1 ATATCTG
35855234 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:35855383 original size:6 final size:6
Alignment explanation
Indices: 35855352--35855445 Score: 79
Period size: 6 Copynumber: 15.3 Consensus size: 6
35855342 TTGCATTCAC
* *
35855352 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATT-T-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
35855399 TTTCACCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT---CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
35855446 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
4 2 0.03
5 4 0.06
6 58 0.81
7 4 0.06
8 2 0.03
9 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:35855387 original size:31 final size:32
Alignment explanation
Indices: 35855352--35855431 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 32
35855342 TTGCATTCAC
*
35855352 ATTCTGATTTTGATTCTGTT-ACCTGATACTG
1 ATTCTGATTCTGATTCTGTTCACCTGATACTG
* *
35855383 ATTCTGATTCTGATT-TTTTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTCACCTGATACTG
35855414 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
35855432 ATTCTAGTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 3 0.07
31 39 0.91
32 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (32 bp):
ATTCTGATTCTGATTCTGTTCACCTGATACTG
Found at i:35856676 original size:21 final size:22
Alignment explanation
Indices: 35856634--35856678 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
35856624 TAAAAGAAAT
*
35856634 TGTTTTAATATATGCTGGATTA
1 TGTTTTAATATATGCTAGATTA
* *
35856656 TGTTTTAAT-TATGTTATATTA
1 TGTTTTAATATATGCTAGATTA
35856677 TG
1 TG
35856679 AATGATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.27, C:0.02, G:0.16, T:0.56
Consensus pattern (22 bp):
TGTTTTAATATATGCTAGATTA
Found at i:35858166 original size:141 final size:141
Alignment explanation
Indices: 35857907--35858184 Score: 448
Period size: 141 Copynumber: 2.0 Consensus size: 141
35857897 TGTCACTAGA
* * ** **
35857907 AAACTATGTGTTATGTGATCTATGTGAATCCGGGTGTTGATCATGCACGTCCTATTGGTGGCTAG
1 AAACCATGTGTTATGTGATCTATGTGAATCCAGGTGTTGATCATGCACGTCCTACCGAAGGCTAG
*
35857972 GTAGTCTGGCATGTGTTACAGATACCTGACACCTTGTGTGAGCAGCCCGTGTAGCAACGTCTTGA
66 GTAGTCTGGCATGTGTTACAGATACCTGACACCATGTGTGAGCAGCCCGTGTAGCAACGTCTTGA
35858037 CTGACAGTAGG
131 CTGACAGTAGG
* *
35858048 AAACCATGTGTTATGTGATCTATGTGAATCCAGGTGTTGGTCATGCACGTCCTACCGAAGGCTGG
1 AAACCATGTGTTATGTGATCTATGTGAATCCAGGTGTTGATCATGCACGTCCTACCGAAGGCTAG
* *
35858113 GTAGTCTGGCATGTGTTGCAGATACCTGACACCATGTGTGAGCAGCTCGTGTAGCAACGTCTTGA
66 GTAGTCTGGCATGTGTTACAGATACCTGACACCATGTGTGAGCAGCCCGTGTAGCAACGTCTTGA
*
35858178 TTGACAG
131 CTGACAG
35858185 CTTGTGTGAG
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
141 125 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (141 bp):
AAACCATGTGTTATGTGATCTATGTGAATCCAGGTGTTGATCATGCACGTCCTACCGAAGGCTAG
GTAGTCTGGCATGTGTTACAGATACCTGACACCATGTGTGAGCAGCCCGTGTAGCAACGTCTTGA
CTGACAGTAGG
Found at i:35861264 original size:18 final size:18
Alignment explanation
Indices: 35861223--35861271 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
35861213 CGCATAGTTT
* *
35861223 TGAGCTCATCAAAAGTTG
1 TGAGCTCATCCAAAGATG
**
35861241 CAAGCTCATCCAAAGATG
1 TGAGCTCATCCAAAGATG
*
35861259 TGAGCTCAACCAA
1 TGAGCTCATCCAA
35861272 GTTGTGATCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (18 bp):
TGAGCTCATCCAAAGATG
Found at i:35869882 original size:42 final size:42
Alignment explanation
Indices: 35869780--35869951 Score: 145
Period size: 43 Copynumber: 4.0 Consensus size: 42
35869770 AGCTCGTACA
* *
35869780 ATGCCAATGTCACAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTC-CAGACAG-GGTCTTACACGAAATCAAATATCG
* * *
35869823 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGT-CCAGACAGGGTCTTACACGAAATCAAATATCG
* * * *
35869865 ATGCCAATGTCCTAGACATGGTCTTACACATAAATGAAAAATCG
1 ATGCCAATGTCC-AGACAGGGTCTTACAC-GAAATCAAATATCG
* *
35869909 ATGCCAACGTCCCAGA-TGTGGTCTTACACGATAA-CAAATATCG
1 ATGCCAATGT-CCAGACAG-GGTCTTACACGA-AATCAAATATCG
35869952 GAATCCTATA
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 25 0.24
43 46 0.45
44 28 0.27
45 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:35869932 original size:86 final size:85
Alignment explanation
Indices: 35869780--35869939 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
35869770 AGCTCGTACA
* ** *
35869780 ATGCCAATGTCACAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAATGTCACAGACATGGTCTTACACATAATCAAAAATCGATGCCACTATCCCAGACAGGGT
35869845 CTTACACGAAATCATATACG
66 CTTACACGAAATCATATACG
* * *
35869865 ATGCCAATGTC-CTAGACATGGTCTTACACATAAATGAAAAATCGATGCCAAC-GTCCCAGA-TG
1 ATGCCAATGTCAC-AGACATGGTCTTACACAT-AATCAAAAATCGATGCC-ACTATCCCAGACAG
35869927 TGGTCTTACACGA
63 -GGTCTTACACGA
35869940 TAACAAATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
84 1 0.02
85 27 0.42
86 34 0.53
87 2 0.03
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAATGTCACAGACATGGTCTTACACATAATCAAAAATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCATATACG
Found at i:35877898 original size:39 final size:39
Alignment explanation
Indices: 35877844--35877959 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
35877834 TTCAGTGATG
*
35877844 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
35877883 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* **
35877922 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAA
1 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAA
35877960 ATATGTTCGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:35882224 original size:42 final size:43
Alignment explanation
Indices: 35882159--35882281 Score: 117
Period size: 44 Copynumber: 2.9 Consensus size: 43
35882149 ATGTAATCAA
* *
35882159 ATATA-GATGTCATTGTCCCAGACAGGGTCTAACAC-AAAATC
1 ATATACGATGCCAATGTCCCAGACAGGGTCTAACACGAAAATC
* * *
35882200 ATATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC
1 ATATACGATGCCAATGTCCCAGACAGGGTCTAACACGAAAATC
* * * * *
35882243 ACAAATCGATTCCAATGTCCTAGAC-GTGGTCTTACACGA
1 ATATA-CGATGCCAATGTCCCAGACAG-GGTCTAACACGA
35882282 TAACACATAT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 5 0.07
42 26 0.39
43 8 0.12
44 28 0.42
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
ATATACGATGCCAATGTCCCAGACAGGGTCTAACACGAAAATC
Found at i:35882305 original size:44 final size:44
Alignment explanation
Indices: 35882172--35882305 Score: 116
Period size: 44 Copynumber: 3.1 Consensus size: 44
35882162 TAGATGTCAT
* * * * *
35882172 TGTCCCAGACAGGGTCTAACAC-AAAATCATATA-CG-ATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAAT-CCAA
*
35882214 TGTCCCAGACATGGTCTTACACGTAAATCACAAATCGATTCCAA
1 TGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAATCCAA
* * * *
35882258 TGTCCTAGACGTGGTCTTACACG-ATAA-CACATATCAGAATCCTA
1 TGTCCCAGACATGGTCTTACACGTA-AATCACAAATC-GAATCCAA
35882302 TGTC
1 TGTC
35882306 GTGACATATG
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 20 0.26
43 16 0.21
44 39 0.51
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAATCCAA
Found at i:35883654 original size:93 final size:93
Alignment explanation
Indices: 35883493--35883679 Score: 356
Period size: 93 Copynumber: 2.0 Consensus size: 93
35883483 ATAATATTAA
*
35883493 AATATTTTTCTGACTCAAATTCGTGGACCCAAAGCCACTATGCTGACAAGGGTCTAAACCGGGTT
1 AATATTTTTCTGACTCAAATTCGTGGACCCAAAGCCACTATGCTGACAAGGGTCTAAACCGGGCT
*
35883558 GTTACACCGTGTCTCTACTTGTGTGTTT
66 GTTACACCGTGTCTCTACTCGTGTGTTT
35883586 AATATTTTTCTGACTCAAATTCGTGGACCCAAAGCCACTATGCTGACAAGGGTCTAAACCGGGCT
1 AATATTTTTCTGACTCAAATTCGTGGACCCAAAGCCACTATGCTGACAAGGGTCTAAACCGGGCT
35883651 GTTACACCGTGTCTCTACTCGTGTGTTT
66 GTTACACCGTGTCTCTACTCGTGTGTTT
35883679 A
1 A
35883680 CTGCTGGGCA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (93 bp):
AATATTTTTCTGACTCAAATTCGTGGACCCAAAGCCACTATGCTGACAAGGGTCTAAACCGGGCT
GTTACACCGTGTCTCTACTCGTGTGTTT
Found at i:35885001 original size:21 final size:21
Alignment explanation
Indices: 35884932--35885001 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
35884922 CACATACATC
35884932 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * * *
35884953 ATGAGGTTAGATGTCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
35884977 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
35884998 ATGA
1 ATGA
35885002 GTTCAGATCA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:35887480 original size:47 final size:49
Alignment explanation
Indices: 35887415--35887729 Score: 211
Period size: 47 Copynumber: 6.6 Consensus size: 49
35887405 TTGTGTGCTG
*
35887415 GTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACATTATGA-GAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGATGAGCCA
* * *
35887461 GTGTAAGACCATGTCTGGGACATGGCATCGG---TATTGA-GACGAGAACTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGATGAG--CCA
* * * *
35887509 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC--GA-GATGTGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGATGAGCCA
* * * * * *
35887553 ATGTAAGACCATGTGTGGGATATGGCATCGGCACAGATATGTGA-GAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-CACAT-TATGATGAGCCA
* * * ** *
35887603 GTGTAAGACCAT-CCATGGGACATGACGTCGGCCTGGATT-TCGAT-AGTCA
1 GTGTAAGACCATGTC-TGGGACATGGCATCGGCC-ACATTAT-GATGAGCCA
35887652 GTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GATGAGCCA
*
35887699 GTGTAAGACCATGTCGGGGACATGGCATCGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGG
35887730 TATTATGCCC
Statistics
Matches: 208, Mismatches: 36, Indels: 48
0.71 0.12 0.16
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 36 0.17
47 60 0.29
48 20 0.10
49 31 0.15
50 32 0.15
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGATGAGCCA
Found at i:35887595 original size:46 final size:44
Alignment explanation
Indices: 35887416--35887584 Score: 117
Period size: 46 Copynumber: 3.7 Consensus size: 44
35887406 TGTGTGCTGG
* * * * * *
35887416 TGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT--GTGTCAA
* * * * *
35887462 TGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGACGAGAACTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGTG-TC-AA
35887510 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAA
* *
35887554 TGTAAGACCATGTGTGGGATATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
35887585 ACAGATATGT
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
44 8 0.08
45 13 0.13
46 31 0.31
47 31 0.31
48 17 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAA
Found at i:35894160 original size:13 final size:13
Alignment explanation
Indices: 35894142--35894166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35894132 GTAAGTGATT
35894142 TTGATGATTTTTC
1 TTGATGATTTTTC
35894155 TTGATGATTTTT
1 TTGATGATTTTT
35894167 TCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:35895118 original size:49 final size:49
Alignment explanation
Indices: 35894857--35895170 Score: 201
Period size: 47 Copynumber: 6.6 Consensus size: 49
35894847 TTTGTGTGCT
* * * * *
35894857 AGTGTAAGA-CATGTTTGGGACAT-ACATCGGCC-AAATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTTTGATAGTC
* ** * *** *
35894903 AGTGTAGGACCATGTCTGGGACATGGCATCGGTATTGA-GACGATA-AC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTTTGATAGTC
* * **
35894950 TAGTGTAAGA-CATGTCTAGGACAT-GCATC-GACTATGA-GATG-T-GTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTA-GATTTTGATAGTC
* * *
35894995 AGTGTAAGACCATGTCTGGGATATGGCATCGGCAC-AGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAGAT-TTTGATAGTC
** * *
35895044 TAGTGTAAGACCATGTCTGCAACATGGCGTCGGCCTGGATTTTGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTTTGATAGTC
* * * *
35895094 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTTTGAT-AGTC
*
35895141 AGTGTAAGACCATGTCTGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
35895171 AGCATTATAC
Statistics
Matches: 211, Mismatches: 39, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 29 0.14
47 61 0.29
48 26 0.12
49 36 0.17
50 34 0.16
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTTTGATAGTC
Found at i:35895457 original size:19 final size:19
Alignment explanation
Indices: 35895433--35895469 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
35895423 TTTATTTGCA
35895433 TGCAACTTACTAAGCTTTT
1 TGCAACTTACTAAGCTTTT
35895452 TGCAACTTACTAAGCTTT
1 TGCAACTTACTAAGCTTT
35895470 ATGATGAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (19 bp):
TGCAACTTACTAAGCTTTT
Found at i:35896288 original size:20 final size:21
Alignment explanation
Indices: 35896249--35896288 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35896239 GTTATAATGA
35896249 CCACACGGGCATGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
* *
35896270 CCACAGGGGCGTG-TGCCCT
1 CCACACGGGCATGTTGCCCT
35896289 GTTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:35904489 original size:36 final size:36
Alignment explanation
Indices: 35904437--35904510 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
35904427 GAATTGGAAT
35904437 ACGTATCTCTAGATTTCTTAGACTAGGATGGGAGTG
1 ACGTATCTCTAGATTTCTTAGACTAGGATGGGAGTG
*
35904473 ACGTATCTCTATATTTCTTAGACTAGGATGGGAGTG
1 ACGTATCTCTAGATTTCTTAGACTAGGATGGGAGTG
35904509 AC
1 AC
35904511 TTGTGCATCG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (36 bp):
ACGTATCTCTAGATTTCTTAGACTAGGATGGGAGTG
Found at i:35916954 original size:45 final size:45
Alignment explanation
Indices: 35916867--35916954 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
35916857 TGCCACATAC
* **
35916867 ATCATGAACTCAGACCACAACTTAATCAGTCCAGATGTCATAGAT
1 ATCATGAACTCAGACCACAACTCAATCAGTCCAGATCACATAGAT
* * * *
35916912 ATCATGAACTCAGACCATAACTCAATGAGTTCATATCACATAG
1 ATCATGAACTCAGACCACAACTCAATCAGTCCAGATCACATAG
35916955 TTCCTAGTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
ATCATGAACTCAGACCACAACTCAATCAGTCCAGATCACATAGAT
Found at i:35919069 original size:37 final size:37
Alignment explanation
Indices: 35919019--35919097 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35919009 TTATTACGAA
* * *
35919019 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
35919056 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
35919093 GTCTT
1 GTCTT
35919098 TAGAGCTCGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:35919326 original size:46 final size:46
Alignment explanation
Indices: 35919216--35919340 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 46
35919206 CCCTTCGGGA
* * *
35919216 CTTATCACATTTATACACTTT-ACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATGGCCACTCGGC
* *
35919262 C-TATCAC-TATATACACTTTCACATTCATCACATGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATGGCCACTCGGC
35919306 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
35919341 CGACACTTTC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
44 22 0.31
45 22 0.31
46 27 0.38
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.34
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATGGCCACTCGGC
Found at i:35919349 original size:23 final size:23
Alignment explanation
Indices: 35919320--35919365 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
35919310 TCACATATAT
35919320 ACACTTTCACATTCATCACATCG
1 ACACTTTCACATTCATCACATCG
35919343 ACACTTTCACATTCATCACATCG
1 ACACTTTCACATTCATCACATCG
35919366 GCCATTAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.35, G:0.04, T:0.30
Consensus pattern (23 bp):
ACACTTTCACATTCATCACATCG
Found at i:35919388 original size:70 final size:69
Alignment explanation
Indices: 35919274--35919412 Score: 251
Period size: 70 Copynumber: 2.0 Consensus size: 69
35919264 ATCACTATAT
* *
35919274 ACACTTTCACATTCATCACATGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
1 ACACTTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
35919339 ATCG
66 ATCG
35919343 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
35919408 CATCG
65 CATCG
35919413 GCATTAGGCC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 21 0.31
70 46 0.69
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (69 bp):
ACACTTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCG
Found at i:35919423 original size:116 final size:113
Alignment explanation
Indices: 35919230--35919458 Score: 361
Period size: 116 Copynumber: 2.0 Consensus size: 113
35919220 TCACATTTAT
* * *
35919230 ACACTTTACATCCATCACGTTGGCCACTCGGCCTATCACTATATACACTTTCACATTCATCACAT
1 ACACTTTACATCCATCACATCGGCCACTAGGCCTATCACTATATACACTTTCACATTCATCACAT
*
35919295 GGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 GGTCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
* *
35919343 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTT-ACATCCATCACATCGGCCACTAGGCC-TATCAC-TATATACACTTTCACATTCATCA
35919408 CATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
63 CAT-GGTCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
35919459 GCCATTAGGC
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
113 7 0.07
114 21 0.20
115 6 0.06
116 70 0.66
117 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (113 bp):
ACACTTTACATCCATCACATCGGCCACTAGGCCTATCACTATATACACTTTCACATTCATCACAT
GGTCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:35919435 original size:46 final size:47
Alignment explanation
Indices: 35919343--35919483 Score: 275
Period size: 47 Copynumber: 3.0 Consensus size: 47
35919333 CATCACATCG
35919343 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
35919390 ACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
35919436 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
35919483 A
1 A
35919484 TATATGTTCA
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
46 46 0.49
47 47 0.51
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
Found at i:35921983 original size:15 final size:15
Alignment explanation
Indices: 35921963--35921991 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
35921953 CCAATTTCCG
35921963 ACTAGGGTCACTTTC
1 ACTAGGGTCACTTTC
35921978 ACTAGGGTCACTTT
1 ACTAGGGTCACTTT
35921992 AGGGGTGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (15 bp):
ACTAGGGTCACTTTC
Found at i:35923234 original size:40 final size:40
Alignment explanation
Indices: 35923120--35923360 Score: 216
Period size: 40 Copynumber: 6.1 Consensus size: 40
35923110 ACCTATGCCT
* * * *
35923120 CGGATATAACACCAGCACG-ATGCTCTT-TGG-CTTTAGCA
1 CGGATATATCACTAGCACGAATGCTCTTCGGGAC-TTAGCC
*
35923158 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
*
35923198 CGGAATACATCACTAGCACGAATGCTC-TCGGGACTTAG-C
1 CGG-ATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* *
35923237 CGGATATATCACTAGCATGAATGCTCTTCGGGACTTAACC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* * *
35923277 CGGATAGTA--ACTTGCCACCAATGC-CTTTC-GGATCTTAGTC
1 CGGATA-TATCACTAG-CACGAATGCTC-TTCGGGA-CTTAGCC
* *
35923317 CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCC
1 CGGATAT-ATCAC-TAGCACGAATGCTCTTCGGGACTTAGCC
35923357 CGGA
1 CGGA
35923361 CATCATTCGA
Statistics
Matches: 169, Mismatches: 19, Indels: 28
0.78 0.09 0.13
Matches are distributed among these distances:
38 38 0.22
39 31 0.18
40 60 0.36
41 33 0.20
42 5 0.03
43 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
Found at i:35923314 original size:79 final size:77
Alignment explanation
Indices: 35923152--35923360 Score: 217
Period size: 79 Copynumber: 2.6 Consensus size: 77
35923142 CTCTTTGGCT
* *
35923152 TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAATACATCACTAGCAC
1 TTAGC-CGGATATATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGG-ATACATAACTAGCAC
*
35923217 GAATGCTCTCGGGAC
63 CAATGCTCTCGGGAC
* * *
35923232 TTAGCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAACCCGGATA-GTAACTTGCCACC
1 TTAGCCGGATATATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATACATAACTAG-CACC
*
35923296 AATGCCTTTC-GGATC
64 AATG-CTCTCGGGA-C
* * *
35923311 TTAGTCCGGATATGGTCACTTAGCACAAAGC-CTTCGGGACTTAGCCCGGA
1 TTAG-CCGGATAT-ATCAC-TAGCAGAATGCTCTTCGGGACTTAGCCCGGA
35923361 CATCATTCGA
Statistics
Matches: 111, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
77 5 0.05
78 13 0.12
79 49 0.44
80 31 0.28
81 8 0.07
82 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (77 bp):
TTAGCCGGATATATCACTAGCAGAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
TGCTCTCGGGAC
Found at i:35923698 original size:29 final size:30
Alignment explanation
Indices: 35923665--35923739 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
35923655 TAATCAACCA
* *
35923665 CGCACACTTAGTGCCATGTACTTT-AA-ACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGACC
*
35923694 CGCACACTTAGTGCCATGCATTTCAAGCCC
1 CGCACACTTAGTGCCATGCATTTCAAGACC
35923724 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
35923740 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
28 3 0.07
29 21 0.51
30 17 0.41
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGCATTTCAAGACC
Found at i:35923783 original size:43 final size:43
Alignment explanation
Indices: 35923722--35923823 Score: 204
Period size: 43 Copynumber: 2.4 Consensus size: 43
35923712 CATTTCAAGC
35923722 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
35923765 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
35923808 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
35923824 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
Found at i:35925727 original size:37 final size:37
Alignment explanation
Indices: 35925677--35925755 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
35925667 TTATTACGAA
* * * *
35925677 GTCTTACCTGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
35925714 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
35925751 GTCTT
1 GTCTT
35925756 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:35925952 original size:47 final size:47
Alignment explanation
Indices: 35925876--35926002 Score: 175
Period size: 47 Copynumber: 2.7 Consensus size: 47
35925866 CTTCGGGACT
* * *
35925876 TATCACATT-TATACACTTTTACATCCATCACGTTGGCCACTCGGCCC
1 TATCAC-TTATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
35925923 TATCACTTATATACACTTTCACATTCATCACATTGGTCATTCGGCCT
1 TATCACTTATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
35925970 TATCACATATATACACTTTCACATTCATCACAT
1 TATCACTTATATACACTTTCACATTCATCACAT
35926003 CGACACTTTC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 2 0.03
47 70 0.97
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (47 bp):
TATCACTTATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
Found at i:35926011 original size:23 final size:23
Alignment explanation
Indices: 35925982--35926027 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
35925972 TCACATATAT
35925982 ACACTTTCACATTCATCACATCG
1 ACACTTTCACATTCATCACATCG
35926005 ACACTTTCACATTCATCACATCG
1 ACACTTTCACATTCATCACATCG
35926028 GCCATTAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.35, G:0.04, T:0.30
Consensus pattern (23 bp):
ACACTTTCACATTCATCACATCG
Found at i:35926017 original size:70 final size:70
Alignment explanation
Indices: 35925935--35926074 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 70
35925925 TCACTTATAT
* * *
35925935 ACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
35926000 CATCG
66 CATCG
35926005 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
35926070 CATCG
66 CATCG
35926075 GCTATTAGGC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (70 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCG
Found at i:35926094 original size:117 final size:117
Alignment explanation
Indices: 35925888--35926121 Score: 362
Period size: 117 Copynumber: 2.0 Consensus size: 117
35925878 TCACATTTAT
* * * * *
35925888 ACACTTTTACATCCATCACGTTGGCCACTCGGCCCTATCACTTATATACACTTTCACATTCATCA
1 ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
* *
35925953 CATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 CATCGGTCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
* * *
35926005 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
35926070 CATCGG-CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 CATCGGTC-ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
35926122 GCCATTAGGC
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 1 0.01
117 105 0.99
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (117 bp):
ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
CATCGGTCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:35926168 original size:49 final size:47
Alignment explanation
Indices: 35926005--35926146 Score: 275
Period size: 47 Copynumber: 3.0 Consensus size: 47
35925995 CATCACATCG
35926005 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
35926052 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
35926099 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
35926146 A
1 A
35926147 TATATGTTCA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
Found at i:35935826 original size:20 final size:20
Alignment explanation
Indices: 35935801--35935840 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
35935791 AAAGTCAATG
35935801 CCCCATACGTCGAATAATTC
1 CCCCATACGTCGAATAATTC
*
35935821 CCCCATATGTCGAATAATTC
1 CCCCATACGTCGAATAATTC
35935841 AATCTCCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.33, G:0.10, T:0.28
Consensus pattern (20 bp):
CCCCATACGTCGAATAATTC
Found at i:35940736 original size:59 final size:59
Alignment explanation
Indices: 35940596--35940736 Score: 155
Period size: 60 Copynumber: 2.4 Consensus size: 59
35940586 ATCAAAGTTA
* * *
35940596 ATTGGGCCTTGGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTAT
1 ATTGGGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAG-ATCAGAGTAT
*
35940657 ATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAG-CCCTATACA-AGTC-GAGATAT
1 ATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCCT-TACAGA-TCAGAG-TAT
*
35940716 ATTGGGCTTTA-CCCATATCAG
1 ATTGGGC-CTAGCCCATATCAG
35940737 CACAGTTAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
58 4 0.06
59 26 0.37
60 33 0.46
61 8 0.11
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (59 bp):
ATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGATCAGAGTAT
Found at i:35941101 original size:26 final size:26
Alignment explanation
Indices: 35941072--35941134 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
35941062 AAAATTAACC
*
35941072 CTAGGGGTATAACGGTCATTTTGCAT-
1 CTAGGGGTATAACGGTAATTTT-CATA
* *
35941098 CTAGGGGTAAAATGGTAATTTTCATA
1 CTAGGGGTATAACGGTAATTTTCATA
35941124 CTTAGGGGTAT
1 C-TAGGGGTAT
35941135 TTCAGTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 20 0.65
27 8 0.26
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (26 bp):
CTAGGGGTATAACGGTAATTTTCATA
Found at i:35941993 original size:71 final size:71
Alignment explanation
Indices: 35941910--35942054 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
35941900 AGGAATAAAT
35941910 AAATTAAGAATAAGGGAGAAGATTTTGTGAAAAGTGAATGAGCAAAATAAAAATCAATTGAAAAT
1 AAATTAAGAATAAGGGAGAAGATTTTGTGAAAAGTGAATGAGCAAAATAAAAATCAATTGAAAAT
35941975 AAAAAG
66 AAAAAG
35941981 AAATTAAGAATAAGGGAGAAGATTTTGTGAAAAGTGAATGAGCAAAATAAAAATCAATTGAAAAT
1 AAATTAAGAATAAGGGAGAAGATTTTGTGAAAAGTGAATGAGCAAAATAAAAATCAATTGAAAAT
35942046 AAAAAG
66 AAAAAG
35942052 AAA
1 AAA
35942055 CAGATTCGGC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.57, C:0.03, G:0.19, T:0.21
Consensus pattern (71 bp):
AAATTAAGAATAAGGGAGAAGATTTTGTGAAAAGTGAATGAGCAAAATAAAAATCAATTGAAAAT
AAAAAG
Found at i:35944423 original size:13 final size:13
Alignment explanation
Indices: 35944401--35944433 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
35944391 AAGGGTTTGT
35944401 TTAT-TAAACTAA
1 TTATCTAAACTAA
35944413 TTATCTAAACTAA
1 TTATCTAAACTAA
*
35944426 TTAACTAA
1 TTATCTAA
35944434 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:35947360 original size:4 final size:5
Alignment explanation
Indices: 35947316--35947375 Score: 59
Period size: 6 Copynumber: 11.2 Consensus size: 5
35947306 AAGAAAATTG
*
35947316 AAATGA AAATAA AAATCA AAAGAA AAATA AGAATA AAAT- AAATA AAATA
1 AAAT-A AAAT-A AAAT-A AAA-TA AAATA A-AATA AAATA AAATA AAATA
35947365 AAATA AAATA A
1 AAATA AAATA A
35947376 GAGGATTCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
4 4 0.09
5 21 0.45
6 22 0.47
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:35947366 original size:14 final size:15
Alignment explanation
Indices: 35947340--35947377 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
35947330 ATCAAAAGAA
35947340 AAATAAGAATAAAAT
1 AAATAAGAATAAAAT
35947355 AAATAA-AATAAAAT
1 AAATAAGAATAAAAT
35947369 AAAATAAGA
1 -AAATAAGA
35947378 GGATTCAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 12 0.57
16 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
AAATAAGAATAAAAT
Found at i:35957030 original size:25 final size:25
Alignment explanation
Indices: 35956985--35957044 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
35956975 TTTAGTTTGT
*
35956985 ATGAGCTTACCGATACTCAGCTCGC
1 ATGAGCTTACCGATACTCAGCTCGA
35957010 ATGAGCTTACC-ATTA-TCCAGCTCGA
1 ATGAGCTTACCGA-TACT-CAGCTCGA
*
35957035 AGGAGCTTAC
1 ATGAGCTTAC
35957045 TAGTTACAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.06
25 29 0.94
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (25 bp):
ATGAGCTTACCGATACTCAGCTCGA
Found at i:35962291 original size:28 final size:28
Alignment explanation
Indices: 35962226--35962324 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
35962216 CATGAGATTG
* ** *
35962226 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-TGATTATATA
35962255 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
35962283 GCACTAAGTGTGCGAGTTTGACTAT-TAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
35962311 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35962325 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.02
28 46 0.72
29 17 0.27
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:35975733 original size:27 final size:26
Alignment explanation
Indices: 35975682--35975733 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
35975672 AAAGAATGAA
35975682 AAAAAATGATAGCTTTTATCATTTTT
1 AAAAAATGATAGCTTTTATCATTTTT
35975708 AAAAAATGATAGCTTTTATCATTTTT
1 AAAAAATGATAGCTTTTATCATTTTT
35975734 GTCTTATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (26 bp):
AAAAAATGATAGCTTTTATCATTTTT
Found at i:35979074 original size:27 final size:27
Alignment explanation
Indices: 35979057--35979261 Score: 151
Period size: 27 Copynumber: 7.6 Consensus size: 27
35979047 ATATTAAGTC
35979057 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
35979084 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
35979112 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
35979139 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
35979166 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
35979193 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
35979220 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
35979247 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
35979262 GTACAATTTA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
27 131 0.83
28 27 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:35979196 original size:54 final size:54
Alignment explanation
Indices: 35979057--35979260 Score: 266
Period size: 54 Copynumber: 3.8 Consensus size: 54
35979047 ATATTAAGTC
* * * * *
35979057 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAA-T
** * *
35979112 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
35979166 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
35979220 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
35979261 TGTACAATTT
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 82 0.64
55 46 0.36
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:35979223 original size:81 final size:82
Alignment explanation
Indices: 35979057--35979261 Score: 261
Period size: 81 Copynumber: 2.5 Consensus size: 82
35979047 ATATTAAGTC
* * * * *
35979057 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
* *
35979122 GTGCTACATAGTCAACT
66 GTGCAACATAGTCAAAT
* * * * **
35979139 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTT
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTT
35979202 AGTGCAACATAGTCAAAT
65 AGTGCAACATAGTCAAAT
*
35979220 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCT
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCT
35979262 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
81 65 0.62
82 40 0.38
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCAACATAGTCAAAT
Found at i:35985697 original size:37 final size:37
Alignment explanation
Indices: 35985634--35985768 Score: 112
Period size: 37 Copynumber: 3.9 Consensus size: 37
35985624 AGCTCAGACG
* * *
35985634 AAATCTCCACACGAAGTTATCAGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
35985671 AAATCTCCACACGTAGTCATCGGGTCTTAC-C---C-
1 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
* * *
35985703 -GA-----ACACGTAGTCATCCGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
* * *
35985734 TAATCTCCACACGTAGTCATCGAGTCTCACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGA
35985769 ATATATTTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
26 21 0.27
27 1 0.01
30 1 0.01
31 1 0.01
32 1 0.01
33 1 0.01
36 1 0.01
37 50 0.65
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
Found at i:35985708 original size:26 final size:26
Alignment explanation
Indices: 35985679--35985729 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
35985669 CAAAATCTCC
*
35985679 ACACGTAGTCATCGGGTCTTACCCGA
1 ACACGTAGTCATCCGGTCTTACCCGA
35985705 ACACGTAGTCATCCGGTCTTACCCG
1 ACACGTAGTCATCCGGTCTTACCCG
35985730 GACATAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.24
Consensus pattern (26 bp):
ACACGTAGTCATCCGGTCTTACCCGA
Found at i:35985726 original size:63 final size:63
Alignment explanation
Indices: 35985642--35985760 Score: 184
Period size: 63 Copynumber: 1.9 Consensus size: 63
35985632 CGAAATCTCC
* * *
35985642 ACACGAAGTTATCAGGTCTTACTCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGA
1 ACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGAGTCTTACCCGA
* * *
35985705 ACACGTAGTCATCCGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGAGTCT
1 ACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGAGTCT
35985761 CACTCGGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (63 bp):
ACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGAGTCTTACCCGA
Found at i:35986052 original size:47 final size:47
Alignment explanation
Indices: 35985973--35986260 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
35985963 TATATATATT
* * * *
35985973 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
35986020 CCACATTGGCCATTCGGCCTTATCACACATATGTATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
35986067 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCGCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
35986114 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
35986161 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
35986208 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
35986255 TCACAT
1 TCACAT
35986261 AAAATCCTAA
Statistics
Matches: 212, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:35986142 original size:141 final size:141
Alignment explanation
Indices: 35985973--35986261 Score: 488
Period size: 141 Copynumber: 2.0 Consensus size: 141
35985963 TATATATATT
* *
35985973 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* * *
35986038 CTTATCACACATATGTATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
* *
35986103 GTTCGCATTCA
131 ATTCACATTCA
* *
35986114 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
*
35986179 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
35986244 ATTCACATTCA
131 ATTCACATTCA
35986255 TCACATA
1 TCACATA
35986262 AAATCCTAAA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 138 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:36001132 original size:27 final size:29
Alignment explanation
Indices: 36001093--36001169 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 29
36001083 GATTTTTAAT
*
36001093 GAAATTGT-CAATTAGGGGCTAAAT-TAA
1 GAAATTGTGAAATTAGGGGCTAAATGTAA
* *
36001120 GAAA-TGTGAAATT-GGGTGTTAAATGTGA
1 GAAATTGTGAAATTAGGG-GCTAAATGTAA
*
36001148 GAAATTGTGAAATATATGGGCT
1 GAAATTGTGAAAT-TAGGGGCT
36001170 GGTATAAGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
26 6 0.15
27 14 0.36
28 6 0.15
29 8 0.21
30 3 0.08
31 2 0.05
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (29 bp):
GAAATTGTGAAATTAGGGGCTAAATGTAA
Found at i:36282164 original size:27 final size:27
Alignment explanation
Indices: 36282130--36282305 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
36282120 TTAAATGTAC
*
36282130 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
36282157 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36282183 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
36282211 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
36282238 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36282265 AGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
36282291 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36282306 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.13
27 110 0.87
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:36282191 original size:54 final size:55
Alignment explanation
Indices: 36282130--36282305 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 55
36282120 TTAAATGTAC
* **
36282130 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
36282185 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
36282238 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTG-ATAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
36282291 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36282306 GACTCAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 19 0.18
54 85 0.82
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:36282270 original size:81 final size:81
Alignment explanation
Indices: 36282131--36282285 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
36282121 TAAATGTACA
* * *
36282131 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
36282196 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
36282212 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
36282276 TGCGAGTTGA
65 TGCGAATTGA
36282286 TATATAGCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36289971 original size:27 final size:27
Alignment explanation
Indices: 36289937--36290114 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36289927 TAAATTGTAC
36289937 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36289964 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36289990 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36290018 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36290046 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36290073 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36290100 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36290115 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36290051 original size:82 final size:81
Alignment explanation
Indices: 36289938--36290093 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36289928 AAATTGTACA
* *
36289938 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36290002 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36290019 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36290084 TGCGAGTTGA
65 TGCGAATTGA
36290094 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36290105 original size:82 final size:81
Alignment explanation
Indices: 36289934--36290114 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36289924 GAGTAAATTG
* *
36289934 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36289999 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36290015 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36290079 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36290097 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36290115 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36304467 original size:46 final size:45
Alignment explanation
Indices: 36304375--36304587 Score: 209
Period size: 46 Copynumber: 4.6 Consensus size: 45
36304365 GTACCAATGC
* * *
36304375 CATGTCCCAAACATGGTCTTACACT-GAC-ACATCTCATA-GCAGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTCATCTCA-AGGCCGATG
*
36304420 CATGTCCCAGACATGTCTTATACTAGCTTACATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CATCTCAAGGCCGATG
* * *
36304466 CATGTCCCAGACATGTCTTACACTAGCGCTCATCTCAATGCCGGTG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCATCTCAAGGCCGATG
* ** *
36304512 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCAAGGCCGATG
*
36304560 CATATCCCAGACATGTCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
36304588 CACAATAACC
Statistics
Matches: 143, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 67 0.47
47 28 0.20
48 22 0.15
49 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCATCTCAAGGCCGATG
Found at i:36304560 original size:94 final size:94
Alignment explanation
Indices: 36304323--36304591 Score: 257
Period size: 94 Copynumber: 2.9 Consensus size: 94
36304313 AGACATCGAC
* * * * * *
36304323 GCCATGTCCCAGACATGGTCTTACACAAGTTCT-AGTATATCTGTACCAATGCCATGTCCCAAAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TA-ATATG-GCCGATG-CATGTCCCAGAC
36304387 ATGGTCTTACACT-G-ACACATCTCATAGCAGAT
62 AT-GTCTTACACTAGCACACATCTCATAGCAGAT
* * *
36304419 G-CATGTCCCAGACAT-GTCTTATACTAGCT-TACAT-CTCAAGGCCGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-ATGGCCGATGCATGTCCCAGACAT
* * * *
36304480 GTCTTACACTAGCGCTCATCTCA-ATGCCGGT
64 GTCTTACACTAGCACACATCTCATA-GCAGAT
* * *
36304511 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCATATCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGACATGT
*
36304576 CTTACACTAGCTCACA
66 CTTACACTAGCACACA
36304592 ATAACCCATA
Statistics
Matches: 142, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
90 10 0.07
91 15 0.11
92 19 0.13
93 16 0.11
94 64 0.45
95 17 0.12
96 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCAGAT
Found at i:36307790 original size:64 final size:64
Alignment explanation
Indices: 36307709--36307893 Score: 205
Period size: 67 Copynumber: 2.9 Consensus size: 64
36307699 AGACATTATG
* * *
36307709 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
36307773 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36307838 AA
63 AA
* * *
36307840 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
36307894 GAACTATATG
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Done.