Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 110 of 295
Found at i:36314192 original size:14 final size:14
Alignment explanation
Indices: 36314173--36314201 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36314163 CGAATAGACT
36314173 ATGAAAACATCCAA
1 ATGAAAACATCCAA
36314187 ATGAAAACATCCAA
1 ATGAAAACATCCAA
36314201 A
1 A
36314202 AACATCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.21, G:0.07, T:0.14
Consensus pattern (14 bp):
ATGAAAACATCCAA
Found at i:36320438 original size:93 final size:93
Alignment explanation
Indices: 36320330--36320501 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
36320320 GCCCATAAGT
* *
36320330 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
36320394 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
36320423 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
36320488 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
36320502 CAAATATCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36320497 original size:46 final size:46
Alignment explanation
Indices: 36320322--36320497 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
36320312 TGTAACCCGC
**
36320322 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCAT
* * *
36320368 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** * *
36320414 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
36320461 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
36320498 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 35 0.33
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:36323984 original size:39 final size:40
Alignment explanation
Indices: 36323899--36324081 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
36323889 GCCACTAGCT
* *
36323899 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36323939 CAAATGCCTTCGGAACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36323978 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** **
36324018 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAACA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
36324058 CAAATG-CTCTC-GGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
36324082 TTATCATCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 51 0.41
40 74 0.59
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36324073 original size:79 final size:78
Alignment explanation
Indices: 36323886--36324081 Score: 223
Period size: 79 Copynumber: 2.5 Consensus size: 78
36323876 TTTAGCCGAT
* * *
36323886 ATAGCCACTAGCTCAAATGC-CTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTC
1 ATAGCCACTAGCACAAATGCTC-TC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
*
36323950 GGAACTTAGCCCGGT
64 GGAACTTAGCCCGGA
*** * * * * *
36323965 ATAATAACTCGCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCG
1 ATAGCCACTAGCACAAATG-CTCTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCG
*
36324030 GGACTTAGCCCGGA
65 GAACTTAGCCCGGA
*
36324044 ATTAGCCACTAACACAAATGCTCTCGGACTTAGCCCGG
1 A-TAGCCACTAGCACAAATGCTCTCGGACTTAGCCCGG
36324082 TTATCATCAA
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 79 0.84
80 15 0.16
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (78 bp):
ATAGCCACTAGCACAAATGCTCTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
AACTTAGCCCGGA
Found at i:36332028 original size:40 final size:40
Alignment explanation
Indices: 36331919--36332043 Score: 159
Period size: 40 Copynumber: 3.1 Consensus size: 40
36331909 CCTTCGGAGT
36331919 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
* * * *
36331958 TTAGCCCGGATATAG-TAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCCA-CTAGCTCAAATGCCTTCGGGAC
36331998 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGCCACTAGCTCAAATGCCT-TCGGGAC
36332038 TTAGCC
1 TTAGCC
36332044 TGGTTATCAT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
39 8 0.11
40 64 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
Found at i:36334142 original size:28 final size:29
Alignment explanation
Indices: 36334102--36334194 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
36334092 TTATGTAACA
*
36334102 AAGATAAAAAAA-CTGAATAAAGAAATCC
1 AAGATAAAAAAACCAGAATAAAGAAATCC
* *
36334130 AAGATAGAGAAACCAGAATAAAGAAATCC
1 AAGATAAAAAAACCAGAATAAAGAAATCC
* * * *
36334159 -AGATTAAAGAGATCCAGGATAAAGAAACCC
1 AAGA-TAAA-AAAACCAGAATAAAGAAATCC
36334189 AAGATA
1 AAGATA
36334195 CGATACTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
28 13 0.25
29 18 0.35
30 18 0.35
31 3 0.06
ACGTcount: A:0.58, C:0.13, G:0.16, T:0.13
Consensus pattern (29 bp):
AAGATAAAAAAACCAGAATAAAGAAATCC
Found at i:36334154 original size:29 final size:30
Alignment explanation
Indices: 36334116--36334194 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
36334106 TAAAAAAACT
*
36334116 GAATAAAGAAATCCAAGATAGAGA-AACCA
1 GAATAAAGAAATCCAAGATAAAGAGAACCA
*
36334145 GAATAAAGAAATCC-AGATTAAAGAGATCCA
1 GAATAAAGAAATCCAAGA-TAAAGAGAACCA
* *
36334175 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
36334195 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
28 3 0.07
29 19 0.44
30 18 0.42
31 3 0.07
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.13
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCA
Found at i:36334160 original size:15 final size:15
Alignment explanation
Indices: 36334116--36334185 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
36334106 TAAAAAAACT
36334116 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
36334131 -AGATAGAGAAA-CCA
1 GA-ATAAAGAAATCCA
36334145 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
36334160 GATTAAAGAGATCCA
1 GAATAAAGAAATCCA
*
36334175 GGATAAAGAAA
1 GAATAAAGAAA
36334186 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
14 12 0.27
15 33 0.73
ACGTcount: A:0.57, C:0.11, G:0.19, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:36334194 original size:15 final size:15
Alignment explanation
Indices: 36334118--36334194 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36334108 AAAAAACTGA
36334118 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
36334133 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
36334146 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36334161 ATTAAAGAGATCCAGG
1 A-TAAAGAAATCCAAG
*
36334177 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36334192 ATA
1 ATA
36334195 CGATACTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
13 2 0.04
14 11 0.22
15 36 0.71
16 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36335510 original size:153 final size:154
Alignment explanation
Indices: 36335343--36335650 Score: 591
Period size: 153 Copynumber: 2.0 Consensus size: 154
36335333 TTAACATAGA
*
36335343 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAATTTATATATCATTAACATTCATCAACATT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
36335408 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATA-C
66 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
36335472 TCTACTACTTTCTATTTATTCCGT
131 TCTACTACTTTCTATTTATTCCGT
*
36335496 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAATATT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
36335561 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
66 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
36335626 TCTACTACTTTCTATTTATTCCGT
131 TCTACTACTTTCTATTTATTCCGT
36335650 T
1 T
36335651 CATCTTATCA
Statistics
Matches: 152, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
153 126 0.83
154 26 0.17
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (154 bp):
TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
TCTACTACTTTCTATTTATTCCGT
Found at i:36337338 original size:46 final size:46
Alignment explanation
Indices: 36337271--36337445 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
36337261 TGTAACCCGC
*
36337271 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
36337317 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
36337367 CTC-T---TGAACTCGGACTCAAGTCAACGAGTTTGGACGCTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
36337410 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36337446 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 62 0.57
47 26 0.24
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:36337393 original size:93 final size:93
Alignment explanation
Indices: 36337278--36337450 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
36337268 CGCCCATAAG
* *
36337278 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
36337343 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
36337371 TGAACTCGGACTCAAGTCAACGAGTTTGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36337436 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
36337451 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:36337465 original size:46 final size:45
Alignment explanation
Indices: 36337322--36337465 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
36337312 CGCATCCATA
* * *
36337322 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * * *
36337370 -TTGAACTCGGACTCAAGTCAACGAGTTTGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
36337415 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
36337461 AGTGA
1 AGTGA
36337466 CATGTCACTT
Statistics
Matches: 73, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
43 4 0.05
46 36 0.49
47 29 0.40
48 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:36339689 original size:47 final size:47
Alignment explanation
Indices: 36339636--36339735 Score: 182
Period size: 47 Copynumber: 2.1 Consensus size: 47
36339626 AGACAAGGAT
36339636 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
* *
36339683 ACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
36339730 ACCATG
1 ACCATG
36339736 CCAAGGCATG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (47 bp):
ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
Found at i:36339783 original size:54 final size:55
Alignment explanation
Indices: 36339720--36339858 Score: 172
Period size: 55 Copynumber: 2.5 Consensus size: 55
36339710 AGATAAGGAT
* *
36339720 ATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGCAAAGAA
1 ATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAAGAAAAGAA
* * * * * **
36339774 ATCATGTAAGACCATGTCAAGACCTGGAATTGATGAGTTACTATAAAGAAAAGGT
1 ATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAAGAAAAGAA
**
36339829 CCCATGTAAGACCATGCCAAGGCATGGCAT
1 ATCATGTAAGACCATGCCAAGGCATGGCAT
36339859 CATAAGGCAA
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
54 34 0.49
55 35 0.51
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (55 bp):
ATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAAGAAAAGAA
Found at i:36344178 original size:50 final size:51
Alignment explanation
Indices: 36344096--36344228 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 51
36344086 TTAGGTCATG
* ** * * **
36344096 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGAT-GGTT-AGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTCA-ATCACA
*
36344146 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTCAATCACA
* *
36344197 TGTGTGGTACTAAGTGCAGGCCACTATGTGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA
36344229 AGAGATGGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
50 34 0.48
51 36 0.51
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTCAATCACA
Found at i:36344246 original size:51 final size:51
Alignment explanation
Indices: 36344144--36344281 Score: 152
Period size: 51 Copynumber: 2.7 Consensus size: 51
36344134 GGTTAGGTTG
* * *** *
36344144 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATAGATTCAATCA
* **
36344195 CATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGATTTGATCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATAGATTCAATCA
* * * *
36344246 CAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGA
36344282 AGGTAGCTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 4 0.05
51 70 0.95
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATAGATTCAATCA
Found at i:36349130 original size:25 final size:25
Alignment explanation
Indices: 36349070--36349153 Score: 91
Period size: 26 Copynumber: 3.4 Consensus size: 25
36349060 AGGAAGCGCA
* * *
36349070 AAAAGGACTTTTGCTCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
36349095 GAAAAGGGCTTTTACCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
36349121 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
36349144 AAAAGAGGCT
1 AAAAG-GGCT
36349154 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 9 0.18
24 12 0.24
25 8 0.16
26 21 0.42
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:36349153 original size:24 final size:23
Alignment explanation
Indices: 36349096--36349167 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
36349086 CAGTTTACCG
*
36349096 AAAAGGGCTTTTACCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAG-TTATC
*
36349121 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATC
**
36349144 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
36349168 ATGATAAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.22
24 16 0.39
25 16 0.39
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:36349396 original size:31 final size:31
Alignment explanation
Indices: 36349361--36349451 Score: 112
Period size: 38 Copynumber: 2.7 Consensus size: 31
36349351 CATTTACAGT
36349361 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36349392 AAAGGCTTCGGCCCAGTGTTATGGAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T--AATATGAAATATGA
36349430 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
36349452 CTGAGATTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 15
0.78 0.00 0.22
Matches are distributed among these distances:
30 5 0.09
31 15 0.28
33 2 0.04
36 2 0.04
38 29 0.55
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36356954 original size:20 final size:20
Alignment explanation
Indices: 36356929--36356995 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
36356919 ATTCTGATAT
36356929 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36356949 ACATGATATGTGTGATATGC
1 ACATGATATGTATGATATGC
36356969 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36356989 ACATGAT
1 ACATGAT
36356996 GTATTCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36356956 original size:11 final size:11
Alignment explanation
Indices: 36356940--36356995 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
36356930 CATGATATGT
36356940 ATGATATGCAC
1 ATGATATGCAC
*
36356951 ATGATATG--T
1 ATGATATGCAC
*
36356960 GTGATATGCAC
1 ATGATATGCAC
*
36356971 ATGATATG--T
1 ATGATATGCAC
36356980 ATGATATGCAC
1 ATGATATGCAC
36356991 ATGAT
1 ATGAT
36356996 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:36356983 original size:9 final size:9
Alignment explanation
Indices: 36356931--36356987 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36356921 TCTGATATAC
36356931 ATGATATGT
1 ATGATATGT
*
36356940 ATGATATGCAC
1 ATGATATG--T
36356951 ATGATATGT
1 ATGATATGT
* *
36356960 GTGATATGCAC
1 ATGATATG--T
36356971 ATGATATGT
1 ATGATATGT
36356980 ATGATATG
1 ATGATATG
36356988 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:36357009 original size:40 final size:40
Alignment explanation
Indices: 36356929--36357009 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
36356919 ATTCTGATAT
* *
36356929 ACATGATATGTATGATATGCACATGATATGTGTGATATGC
1 ACATGATATGTATGATATGCACATGATATATGTCATATGC
*
36356969 ACATGATATGTATGATATGCACATGATGTAT-TCATAATGC
1 ACATGATATGTATGATATGCACATGATATATGTCAT-ATGC
36357009 A
1 A
36357010 TTGGGATGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (40 bp):
ACATGATATGTATGATATGCACATGATATATGTCATATGC
Found at i:36357080 original size:26 final size:25
Alignment explanation
Indices: 36357041--36357126 Score: 104
Period size: 26 Copynumber: 3.4 Consensus size: 25
36357031 GGAGGAAGTG
*
36357041 CAAAAAGGGTTTTTGCCCCAGTTTAT
1 CAAAAA-GGCTTTTGCCCCAGTTTAT
*
36357067 CGAAAAGGACTTTTGCCCCAGTTTAT
1 CAAAAAGG-CTTTTGCCCCAGTTTAT
36357093 CAAAAAGGC-TTTGCCCCAG-TTAT
1 CAAAAAGGCTTTTGCCCCAGTTTAT
*
36357116 TAAAAGAGGCT
1 CAAAA-AGGCT
36357127 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
23 8 0.15
24 14 0.26
25 3 0.06
26 28 0.53
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (25 bp):
CAAAAAGGCTTTTGCCCCAGTTTAT
Found at i:36359391 original size:14 final size:14
Alignment explanation
Indices: 36359372--36359399 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36359362 CTTCGATGAG
36359372 TTAGAAGAAACTAT
1 TTAGAAGAAACTAT
36359386 TTAGAAGAAACTAT
1 TTAGAAGAAACTAT
36359400 GAGCAAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TTAGAAGAAACTAT
Found at i:36360691 original size:50 final size:51
Alignment explanation
Indices: 36360616--36360752 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 51
36360606 TATGGATGAA
* * *
36360616 TTAGGTCACGTGTGTAGTACTAAGTGCAGGGTACTACGAGTACCAGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
* * * * *
36360666 TTAGGTCGCATGTGTATTACTAAGTGCAGGCTACTATGCGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
* * * *
36360717 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
36360753 TGTGTAAGAG
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 41 0.57
51 31 0.43
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
Found at i:36360745 original size:51 final size:50
Alignment explanation
Indices: 36360616--36360798 Score: 159
Period size: 51 Copynumber: 3.6 Consensus size: 50
36360606 TATGGATGAA
* * * * *
36360616 TTAGGTCACGTGTGTAGTACTAAGTGCAGGGTACTACGAGTACCAGATGG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATGC
* * * * *
36360666 TTAGGTCGCATGTGTATTACTAAGTGCAGGCTACTATGCGTACCCGATAGC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGAT-GC
* * * * ** *
36360717 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGAT-GC
* * * *
36360768 TTTGATCACAAGTGTAGTACTATGTGAAGGC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGC
36360799 AACTTTGTGA
Statistics
Matches: 107, Mismatches: 25, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 41 0.38
51 66 0.62
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATGC
Found at i:36361843 original size:14 final size:14
Alignment explanation
Indices: 36361824--36361851 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36361814 CACTACGATC
36361824 ATTCTTATTTTGAA
1 ATTCTTATTTTGAA
36361838 ATTCTTATTTTGAA
1 ATTCTTATTTTGAA
36361852 TTATGGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
ATTCTTATTTTGAA
Found at i:36368077 original size:990 final size:990
Alignment explanation
Indices: 36366158--36368142 Score: 3970
Period size: 990 Copynumber: 2.0 Consensus size: 990
36366148 ATTTGTTCTC
36366158 ACATATACCCCACTATGAATAGTTCTAACATCACAACATTTCTAGCTATGATGTTACACACTAAT
1 ACATATACCCCACTATGAATAGTTCTAACATCACAACATTTCTAGCTATGATGTTACACACTAAT
36366223 TTGCAAAAAGAAAATATTTGAGTTGGAACATGGATACATCGAAGCATGACCCGCTGCATCCACAA
66 TTGCAAAAAGAAAATATTTGAGTTGGAACATGGATACATCGAAGCATGACCCGCTGCATCCACAA
36366288 AGAAAAAGTGGGACTCACTACCCCATACAAAAAGGAAAAGGTTCCCATAGGACGGTCTAAGTGGA
131 AGAAAAAGTGGGACTCACTACCCCATACAAAAAGGAAAAGGTTCCCATAGGACGGTCTAAGTGGA
36366353 GGTTGCACCCAACTACAAATTCAATTTGAAACTCGATCTATAAGCAACTCATCGTAGCCCATCAC
196 GGTTGCACCCAACTACAAATTCAATTTGAAACTCGATCTATAAGCAACTCATCGTAGCCCATCAC
36366418 AAACAATTTAGTGAGGGAAAGAGGACAAATATGACACAAAAAGAAGATCCACCTCCTCTGAGGAA
261 AAACAATTTAGTGAGGGAAAGAGGACAAATATGACACAAAAAGAAGATCCACCTCCTCTGAGGAA
36366483 AAAAAGGGAAGTCAAAAGATCGACAAAATAGGTGAACTAACCATACTCCTGATGTTGAATGGATA
326 AAAAAGGGAAGTCAAAAGATCGACAAAATAGGTGAACTAACCATACTCCTGATGTTGAATGGATA
36366548 AAGCAATGGATGCACAAGTTAGGACTGTTGTTCAAGGATTATACTGGACAGCAGAATTTAGAGAT
391 AAGCAATGGATGCACAAGTTAGGACTGTTGTTCAAGGATTATACTGGACAGCAGAATTTAGAGAT
36366613 CCCAAATTTCTGACCCTTGAAACTAATCAATTTCAAGACTCTCATACCAAAGAGGCAGAGGACCC
456 CCCAAATTTCTGACCCTTGAAACTAATCAATTTCAAGACTCTCATACCAAAGAGGCAGAGGACCC
36366678 AAAAGAGGAGGACAAAGAGAAAAATGATGCAGACGAGGACACAGAAGAGTCAGAACCCAAGTCCA
521 AAAAGAGGAGGACAAAGAGAAAAATGATGCAGACGAGGACACAGAAGAGTCAGAACCCAAGTCCA
36366743 ACTAAGACACAAATTAAATTATAATTTTCTTATTCCAAGCATTTTATTTTGAGACTTTAATTATT
586 ACTAAGACACAAATTAAATTATAATTTTCTTATTCCAAGCATTTTATTTTGAGACTTTAATTATT
36366808 TCTAGAATTTGGACAATTTTAATTATGTTTTGCTTTCATTAAAAAAACTTTTAATCTGTTTATCT
651 TCTAGAATTTGGACAATTTTAATTATGTTTTGCTTTCATTAAAAAAACTTTTAATCTGTTTATCT
36366873 AGTCTAGTGTATTTTTACTTGGGACTTGTAATTTTTATTTTGGATGATTTTATTTTTACTTTTAG
716 AGTCTAGTGTATTTTTACTTGGGACTTGTAATTTTTATTTTGGATGATTTTATTTTTACTTTTAG
36366938 ACTTTATTTATTTATTTATTAGTTTTTCTATTAGCTAACTTTTGTGTAGGAACCTAGTACGATAT
781 ACTTTATTTATTTATTTATTAGTTTTTCTATTAGCTAACTTTTGTGTAGGAACCTAGTACGATAT
36367003 GAGGCACTATAGTTGGGAGCAAAATCGGCACGAAGAGGACCACCCGAACACATCTAAGGAACTTC
846 GAGGCACTATAGTTGGGAGCAAAATCGGCACGAAGAGGACCACCCGAACACATCTAAGGAACTTC
36367068 AATGCTCAAATCAGGTATTCTCTTATCTTATCTATCGAGTGCACATTAGAGACAATGCGCCAACT
911 AATGCTCAAATCAGGTATTCTCTTATCTTATCTATCGAGTGCACATTAGAGACAATGCGCCAACT
36367133 AAAGTATGGTGGGTA
976 AAAGTATGGTGGGTA
36367148 ACATATACCCCACTATGAATAGTTCTAACATCACAACATTTCTAGCTATGATGTTACACACTAAT
1 ACATATACCCCACTATGAATAGTTCTAACATCACAACATTTCTAGCTATGATGTTACACACTAAT
36367213 TTGCAAAAAGAAAATATTTGAGTTGGAACATGGATACATCGAAGCATGACCCGCTGCATCCACAA
66 TTGCAAAAAGAAAATATTTGAGTTGGAACATGGATACATCGAAGCATGACCCGCTGCATCCACAA
36367278 AGAAAAAGTGGGACTCACTACCCCATACAAAAAGGAAAAGGTTCCCATAGGACGGTCTAAGTGGA
131 AGAAAAAGTGGGACTCACTACCCCATACAAAAAGGAAAAGGTTCCCATAGGACGGTCTAAGTGGA
36367343 GGTTGCACCCAACTACAAATTCAATTTGAAACTCGATCTATAAGCAACTCATCGTAGCCCATCAC
196 GGTTGCACCCAACTACAAATTCAATTTGAAACTCGATCTATAAGCAACTCATCGTAGCCCATCAC
36367408 AAACAATTTAGTGAGGGAAAGAGGACAAATATGACACAAAAAGAAGATCCACCTCCTCTGAGGAA
261 AAACAATTTAGTGAGGGAAAGAGGACAAATATGACACAAAAAGAAGATCCACCTCCTCTGAGGAA
36367473 AAAAAGGGAAGTCAAAAGATCGACAAAATAGGTGAACTAACCATACTCCTGATGTTGAATGGATA
326 AAAAAGGGAAGTCAAAAGATCGACAAAATAGGTGAACTAACCATACTCCTGATGTTGAATGGATA
36367538 AAGCAATGGATGCACAAGTTAGGACTGTTGTTCAAGGATTATACTGGACAGCAGAATTTAGAGAT
391 AAGCAATGGATGCACAAGTTAGGACTGTTGTTCAAGGATTATACTGGACAGCAGAATTTAGAGAT
36367603 CCCAAATTTCTGACCCTTGAAACTAATCAATTTCAAGACTCTCATACCAAAGAGGCAGAGGACCC
456 CCCAAATTTCTGACCCTTGAAACTAATCAATTTCAAGACTCTCATACCAAAGAGGCAGAGGACCC
36367668 AAAAGAGGAGGACAAAGAGAAAAATGATGCAGACGAGGACACAGAAGAGTCAGAACCCAAGTCCA
521 AAAAGAGGAGGACAAAGAGAAAAATGATGCAGACGAGGACACAGAAGAGTCAGAACCCAAGTCCA
36367733 ACTAAGACACAAATTAAATTATAATTTTCTTATTCCAAGCATTTTATTTTGAGACTTTAATTATT
586 ACTAAGACACAAATTAAATTATAATTTTCTTATTCCAAGCATTTTATTTTGAGACTTTAATTATT
36367798 TCTAGAATTTGGACAATTTTAATTATGTTTTGCTTTCATTAAAAAAACTTTTAATCTGTTTATCT
651 TCTAGAATTTGGACAATTTTAATTATGTTTTGCTTTCATTAAAAAAACTTTTAATCTGTTTATCT
36367863 AGTCTAGTGTATTTTTACTTGGGACTTGTAATTTTTATTTTGGATGATTTTATTTTTACTTTTAG
716 AGTCTAGTGTATTTTTACTTGGGACTTGTAATTTTTATTTTGGATGATTTTATTTTTACTTTTAG
36367928 ACTTTATTTATTTATTTATTAGTTTTTCTATTAGCTAACTTTTGTGTAGGAACCTAGTACGATAT
781 ACTTTATTTATTTATTTATTAGTTTTTCTATTAGCTAACTTTTGTGTAGGAACCTAGTACGATAT
36367993 GAGGCACTATAGTTGGGAGCAAAATCGGCACGAAGAGGACCACCCGAACACATCTAAGGAACTTC
846 GAGGCACTATAGTTGGGAGCAAAATCGGCACGAAGAGGACCACCCGAACACATCTAAGGAACTTC
36368058 AATGCTCAAATCAGGTATTCTCTTATCTTATCTATCGAGTGCACATTAGAGACAATGCGCCAACT
911 AATGCTCAAATCAGGTATTCTCTTATCTTATCTATCGAGTGCACATTAGAGACAATGCGCCAACT
36368123 AAAGTATGGTGGGTA
976 AAAGTATGGTGGGTA
36368138 ACATA
1 ACATA
36368143 GAAATTTTTC
Statistics
Matches: 995, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
990 995 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (990 bp):
ACATATACCCCACTATGAATAGTTCTAACATCACAACATTTCTAGCTATGATGTTACACACTAAT
TTGCAAAAAGAAAATATTTGAGTTGGAACATGGATACATCGAAGCATGACCCGCTGCATCCACAA
AGAAAAAGTGGGACTCACTACCCCATACAAAAAGGAAAAGGTTCCCATAGGACGGTCTAAGTGGA
GGTTGCACCCAACTACAAATTCAATTTGAAACTCGATCTATAAGCAACTCATCGTAGCCCATCAC
AAACAATTTAGTGAGGGAAAGAGGACAAATATGACACAAAAAGAAGATCCACCTCCTCTGAGGAA
AAAAAGGGAAGTCAAAAGATCGACAAAATAGGTGAACTAACCATACTCCTGATGTTGAATGGATA
AAGCAATGGATGCACAAGTTAGGACTGTTGTTCAAGGATTATACTGGACAGCAGAATTTAGAGAT
CCCAAATTTCTGACCCTTGAAACTAATCAATTTCAAGACTCTCATACCAAAGAGGCAGAGGACCC
AAAAGAGGAGGACAAAGAGAAAAATGATGCAGACGAGGACACAGAAGAGTCAGAACCCAAGTCCA
ACTAAGACACAAATTAAATTATAATTTTCTTATTCCAAGCATTTTATTTTGAGACTTTAATTATT
TCTAGAATTTGGACAATTTTAATTATGTTTTGCTTTCATTAAAAAAACTTTTAATCTGTTTATCT
AGTCTAGTGTATTTTTACTTGGGACTTGTAATTTTTATTTTGGATGATTTTATTTTTACTTTTAG
ACTTTATTTATTTATTTATTAGTTTTTCTATTAGCTAACTTTTGTGTAGGAACCTAGTACGATAT
GAGGCACTATAGTTGGGAGCAAAATCGGCACGAAGAGGACCACCCGAACACATCTAAGGAACTTC
AATGCTCAAATCAGGTATTCTCTTATCTTATCTATCGAGTGCACATTAGAGACAATGCGCCAACT
AAAGTATGGTGGGTA
Found at i:36374129 original size:54 final size:54
Alignment explanation
Indices: 36373943--36374190 Score: 331
Period size: 54 Copynumber: 4.6 Consensus size: 54
36373933 CTTACCATTT
* * *
36373943 CCATG-CTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
* **
36373995 TCATGTCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATG
1 CCATGTCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATG
* * * *
36374050 CCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCGATG
1 CCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
* * *
36374104 CCATGTATTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
*
36374158 CCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CCATGTCTTGGCATGGTCTTACATGATATCCTT
36374191 ATCTTACCAA
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
52 6 0.03
53 29 0.17
54 92 0.53
55 45 0.26
56 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (54 bp):
CCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
Found at i:36374227 original size:47 final size:47
Alignment explanation
Indices: 36374169--36374290 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
36374159 CATGCCTTGG
36374169 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
36374216 CATGGTTTTACATGGTATCCTTTTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
36374263 CATGGTCTTACATGATATACTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
36374291 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:36376851 original size:54 final size:54
Alignment explanation
Indices: 36376664--36377023 Score: 402
Period size: 54 Copynumber: 6.6 Consensus size: 54
36376654 AACCTACCAT
* * * *
36376664 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
* ***
36376717 TGCCATGACTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATAG-AACTCATCAA
* ** * * *
36376772 TGCCATGTCTTGACATTATCTTACATGATTTCCTTACCTTATAGAACTTATCTA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
* *
36376826 TGCCATGTATTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
* *** *
36376880 TGCCATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTACCTCATCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATAG-AACTCATCAA
* * *
36376935 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
* * * * *
36376989 TGCCATGCCTTAGCATAGACTTACATGATATCCTT
1 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTT
36377024 ATCTTACCAA
Statistics
Matches: 255, Mismatches: 45, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
52 2 0.01
53 35 0.14
54 129 0.51
55 85 0.33
56 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
Found at i:36376863 original size:109 final size:108
Alignment explanation
Indices: 36376664--36377029 Score: 411
Period size: 109 Copynumber: 3.4 Consensus size: 108
36376654 AACCTACCAT
* * * * *
36376664 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-GAACTCACCAATGCCATG-ACT
1 TGCCATGCCTTGACATGATCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGTA-T
*** *
36376727 TGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAA
65 TGGCATGGTCTTACATGATTTCC-TTGCCTTATAG-AACTTATCAA
* * * * *
36376772 TGCCATGTCTTGACATTATCTTACATGATTTCCTTACCTTATAGAACTTATCTATGCCATGTATT
1 TGCCATGCCTTGACATGATCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGTATT
36376837 GGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
66 GGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
* * ** * * *
36376880 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTACCTCATCAATGCCATGTC
1 TGCCATGCCTTGACATGATCTTACATGATATCC-TTACCTTATAG-AACTCATCAATGCCATGTA
* *
36376944 TTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
64 TTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
*
36376989 TGCCATGCCTT-AGCATAGA-CTTACATGATATCCTTATCTTA
1 TGCCATGCCTTGA-CAT-GATCTTACATGATATCCTTACCTTA
36377030 CCAAATGCCA
Statistics
Matches: 218, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
107 2 0.01
108 79 0.36
109 131 0.60
110 6 0.03
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (108 bp):
TGCCATGCCTTGACATGATCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGTATT
GGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
Found at i:36376933 original size:163 final size:162
Alignment explanation
Indices: 36376664--36377023 Score: 576
Period size: 163 Copynumber: 2.2 Consensus size: 162
36376654 AACCTACCAT
* *
36376664 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTATGAACTCACCAATGCCATGACTTG
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGACTTG
*
36376729 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATTATCTT
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGATCTT
*
36376794 ACATGATTTCCTTACCTTATAGAACTTATCTA
131 ACATGATTTCCTTACCTTATAGAACTTATCAA
* * * * *
36376826 TGCCATGTATTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGACTT
*
36376891 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTACCTCATCAATGCCATGTCTTGACATGATCT
65 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGATCT
*
36376956 TACATGATTTCCTTGCCTTATAGAACTTATCAA
130 TACATGATTTCCTTACCTTATAGAACTTATCAA
* * * *
36376989 TGCCATGCCTTAGCATAGACTTACATGATATCCTT
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTT
36377024 ATCTTACCAA
Statistics
Matches: 180, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
162 38 0.21
163 142 0.79
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (162 bp):
TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGACTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGATCTT
ACATGATTTCCTTACCTTATAGAACTTATCAA
Found at i:36384174 original size:37 final size:37
Alignment explanation
Indices: 36384127--36384234 Score: 173
Period size: 36 Copynumber: 2.9 Consensus size: 37
36384117 TAGCTCAGAC
* *
36384127 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36384164 AAATATCCACACGTAGTCATCGGGTCTTA-CCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36384200 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36384235 ATATATTTCC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 34 0.52
37 31 0.48
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36384488 original size:48 final size:49
Alignment explanation
Indices: 36384380--36384521 Score: 198
Period size: 50 Copynumber: 2.9 Consensus size: 49
36384370 GCACATCGCC
* * *
36384380 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCATATATGCATATCTCA-A
*
36384430 TATATATTTCACATT-GACCATTCGGCTTTACCATATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCATATATGCATATCTCAA
36384478 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCAT
1 TACATATTTCACATTAGCCATTCGGCTTTA-C-CATATATGCAT
36384522 GTTCATATTC
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
48 28 0.34
49 3 0.04
50 52 0.63
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCATATATGCATATCTCAA
Found at i:36384517 original size:50 final size:50
Alignment explanation
Indices: 36384380--36384615 Score: 210
Period size: 47 Copynumber: 4.9 Consensus size: 50
36384370 GCACATCGCC
*
36384380 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA--CATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTC--A
*
36384430 TATATATTTCACATT-GACCATTCGGCTTTA-C-CATATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATATGCATATCTCA
*
36384478 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
** * * * * *
36384527 T--AT-TCACCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC-
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
* * * *
36384573 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCAT
36384616 GTTCACATTC
Statistics
Matches: 163, Mismatches: 13, Indels: 23
0.82 0.07 0.12
Matches are distributed among these distances:
46 1 0.01
47 74 0.45
48 34 0.21
49 8 0.05
50 46 0.28
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (50 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
Found at i:36384550 original size:47 final size:47
Alignment explanation
Indices: 36384438--36384679 Score: 292
Period size: 47 Copynumber: 5.1 Consensus size: 47
36384428 TATATATATT
* * * *
36384438 TCACATTGACCATTCGGCTTTA-C-CATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TC--ACAT-TCA
* * * *
36384486 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36384533 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36384580 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36384627 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36384674 TCACAT
1 TCACAT
36384680 AAAATCCTAA
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 136 0.79
48 20 0.12
49 3 0.02
50 12 0.07
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36384606 original size:22 final size:22
Alignment explanation
Indices: 36384579--36384650 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
36384569 GCTCACATTC
36384579 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36384601 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36384625 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36384648 ATC
1 ATC
36384651 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36388738 original size:40 final size:40
Alignment explanation
Indices: 36388706--36389137 Score: 639
Period size: 40 Copynumber: 10.8 Consensus size: 40
36388696 CCAGCATGAT
* * * *
36388706 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
36388746 TGCTTTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
36388786 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
36388826 TGCTCTTCGGGACTTAGTCCGAATACATCACTAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
36388866 TGCTCCTCAGGACTTAGTCCAGATACATCACTCGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
36388906 TGCTCTTCGGGACTTAGCCCGAATATATCACTGGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
36388946 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
36388986 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
36389026 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
36389066 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
36389106 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
36389138 CTCAGTTCTC
Statistics
Matches: 354, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 354 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:36389331 original size:36 final size:36
Alignment explanation
Indices: 36389284--36389352 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
36389274 CTTATGAGAA
36389284 TGATTTTGTGATGACCTGGTGATTATAGGTCTACAC
1 TGATTTTGTGATGACCTGGTGATTATAGGTCTACAC
*
36389320 TGATTTTGTGATGACCTTGTGATTATAGGTCTA
1 TGATTTTGTGATGACCTGGTGATTATAGGTCTA
36389353 TACTTATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.42
Consensus pattern (36 bp):
TGATTTTGTGATGACCTGGTGATTATAGGTCTACAC
Found at i:36400227 original size:8 final size:8
Alignment explanation
Indices: 36400214--36400250 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
36400204 GTAGAACGGC
36400214 AAAAGCCA
1 AAAAGCCA
*
36400222 AAAAGCCG
1 AAAAGCCA
*
36400230 AAATGCCA
1 AAAAGCCA
36400238 AAAAGCCA
1 AAAAGCCA
36400246 AAAAG
1 AAAAG
36400251 TCGAGAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.59, C:0.22, G:0.16, T:0.03
Consensus pattern (8 bp):
AAAAGCCA
Found at i:36401048 original size:20 final size:20
Alignment explanation
Indices: 36400912--36401040 Score: 154
Period size: 20 Copynumber: 6.5 Consensus size: 20
36400902 GTGGACATAC
**
36400912 TGATGGCTTTGTGCTGCTAT
1 TGATGGCTTTGTGCCACTAT
*
36400932 TGATGGCTTTGTGCTACTAT
1 TGATGGCTTTGTGCCACTAT
36400952 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
36400972 TGATGTCTTTGTGCCACTAC
1 TGATGGCTTTGTGCCACTAT
* *
36400992 TGATGGC--TGTACTACTAT
1 TGATGGCTTTGTGCCACTAT
* * *
36401010 TGATGGATTTGTACCGCTAT
1 TGATGGCTTTGTGCCACTAT
36401030 TGATGGCTTTG
1 TGATGGCTTTG
36401041 ATCCGCTACT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
18 14 0.15
20 81 0.85
ACGTcount: A:0.16, C:0.17, G:0.26, T:0.42
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:36401050 original size:58 final size:59
Alignment explanation
Indices: 36400912--36401055 Score: 175
Period size: 58 Copynumber: 2.4 Consensus size: 59
36400902 GTGGACATAC
* * * * *
36400912 TGATGGCTTTGTGCTGCTATTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCGCTACTGATGGC-TTGTACTACTATTGATGGATTTGTACCACTAT
* * *
36400972 TGATGTCTTTGTGCCACTACTGATGGC-TGTACTACTATTGATGGATTTGTACCGCTAT
1 TGATGGCTTTGTGCCGCTACTGATGGCTTGTACTACTATTGATGGATTTGTACCACTAT
*
36401030 TGATGGCTTTGAT-CCGCTACTCATGG
1 TGATGGCTTTG-TGCCGCTACTGATGG
36401056 ATTTCTGCCA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
58 48 0.67
59 1 0.01
60 23 0.32
ACGTcount: A:0.16, C:0.19, G:0.25, T:0.40
Consensus pattern (59 bp):
TGATGGCTTTGTGCCGCTACTGATGGCTTGTACTACTATTGATGGATTTGTACCACTAT
Found at i:36401065 original size:78 final size:80
Alignment explanation
Indices: 36400908--36401074 Score: 178
Period size: 78 Copynumber: 2.1 Consensus size: 80
36400898 GACTGTGGAC
* * * * * *
36400908 ATACTGATGGCTTTGTGCTGCTATTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCACTATT
1 ATACTGATGGC-TTGTACTACTATTGATGGATTTGTACCACTATTGATGGCTTTGTGCCACTACT
* ** *
36400973 GATGTCTTTGTGCCA-
65 CATGGATTTCTGCCAT
* * *
36400988 CTACTGATGGC-TGTACTACTATTGATGGATTTGTACCGCTATTGATGGCTTTGAT-CCGCTACT
1 ATACTGATGGCTTGTACTACTATTGATGGATTTGTACCACTATTGATGGCTTTG-TGCCACTACT
36401051 CATGGATTTCTGCCAT
65 CATGGATTTCTGCCAT
36401067 ATACTGAT
1 ATACTGAT
36401075 ACTGGTAGCT
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
78 53 0.75
79 8 0.11
80 10 0.14
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (80 bp):
ATACTGATGGCTTGTACTACTATTGATGGATTTGTACCACTATTGATGGCTTTGTGCCACTACTC
ATGGATTTCTGCCAT
Found at i:36401167 original size:26 final size:26
Alignment explanation
Indices: 36401067--36401174 Score: 99
Period size: 26 Copynumber: 4.2 Consensus size: 26
36401057 TTTCTGCCAT
* *
36401067 ATACTGATACTGGTAGCTTTGCTGCA
1 ATACTGTTACTGGCAGCTTTGCTGCA
* * * ** * *
36401093 TTATTGTTTCTGGCAAATTTGCTACG
1 ATACTGTTACTGGCAGCTTTGCTGCA
* *
36401119 ATACTATTACTGGCATCTTTGCTGCA
1 ATACTGTTACTGGCAGCTTTGCTGCA
* *
36401145 ATACTGTTACTGGCAGCTATGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCA
36401171 ATAC
1 ATAC
36401175 CGGTGCGTTG
Statistics
Matches: 61, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCA
Found at i:36401173 original size:52 final size:52
Alignment explanation
Indices: 36401074--36401174 Score: 121
Period size: 52 Copynumber: 1.9 Consensus size: 52
36401064 CATATACTGA
* * * * *
36401074 TACTGGTAGCTTTGCTGCATTATTGTTTCTGGCAAATTTGCTACGATACTAT
1 TACTGGCAGCTTTGCTGCAATACTGTTACTGGCAAATATGCTACGATACTAT
* ** *
36401126 TACTGGCATCTTTGCTGCAATACTGTTACTGGCAGCTATGCTGCGATAC
1 TACTGGCAGCTTTGCTGCAATACTGTTACTGGCAAATATGCTACGATAC
36401175 CGGTGCGTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (52 bp):
TACTGGCAGCTTTGCTGCAATACTGTTACTGGCAAATATGCTACGATACTAT
Found at i:36403772 original size:17 final size:17
Alignment explanation
Indices: 36403750--36403784 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36403740 TTCCAGGGGC
36403750 CGAATGTACCCTTCCCA
1 CGAATGTACCCTTCCCA
36403767 CGAATGTACCCTTCCCA
1 CGAATGTACCCTTCCCA
36403784 C
1 C
36403785 TCATTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.43, G:0.11, T:0.23
Consensus pattern (17 bp):
CGAATGTACCCTTCCCA
Found at i:36404906 original size:20 final size:20
Alignment explanation
Indices: 36404861--36404956 Score: 72
Period size: 20 Copynumber: 4.9 Consensus size: 20
36404851 TACTGTGGAC
* *
36404861 CTACTGATGGCTGTGT-C-G
1 CTACTGATGGCTTTCTGCTG
*
36404879 CTATTGATGGCTTTCTGCTG
1 CTACTGATGGCTTTCTGCTG
* **
36404899 CTACTGATGGCTTTATGCCA
1 CTACTGATGGCTTTCTGCTG
* *
36404919 CTATTGATGGCTTTGTGCCT-
1 CTACTGATGGCTTTCTG-CTG
* *
36404939 CTACTCATAGCTTTCTGC
1 CTACTGATGGCTTTCTGC
36404957 CATATACTGA
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
18 13 0.21
19 2 0.03
20 45 0.74
21 1 0.02
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.40
Consensus pattern (20 bp):
CTACTGATGGCTTTCTGCTG
Found at i:36404930 original size:40 final size:40
Alignment explanation
Indices: 36404879--36404958 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
36404869 GGCTGTGTCG
* *
36404879 CTATTGATGGCTTTCTG-CTGCTACTGATGGCTTTATGCCA
1 CTATTGATGGCTTTCTGCCT-CTACTCATAGCTTTATGCCA
* *
36404919 CTATTGATGGCTTTGTGCCTCTACTCATAGCTTTCTGCCA
1 CTATTGATGGCTTTCTGCCTCTACTCATAGCTTTATGCCA
36404959 TATACTGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (40 bp):
CTATTGATGGCTTTCTGCCTCTACTCATAGCTTTATGCCA
Found at i:36404957 original size:20 final size:20
Alignment explanation
Indices: 36404883--36404967 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
36404873 GTGTCGCTAT
36404883 TGATGGCTTTCTG-CTGCTAC
1 TGATGGCTTTCTGCCT-CTAC
* * *
36404903 TGATGGCTTTATGCCACTAT
1 TGATGGCTTTCTGCCTCTAC
*
36404923 TGATGGCTTTGTGCCTCTAC
1 TGATGGCTTTCTGCCTCTAC
* * *
36404943 TCATAGCTTTCTGCCATATAC
1 TGATGGCTTTCTGCC-TCTAC
36404964 TGAT
1 TGAT
36404968 ACTGGTAGCT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
20 44 0.85
21 8 0.15
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (20 bp):
TGATGGCTTTCTGCCTCTAC
Found at i:36404978 original size:27 final size:27
Alignment explanation
Indices: 36404946--36405010 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
36404936 CCTCTACTCA
36404946 TAGCTTT-CTGCCATATACTGATACTGG
1 TAGCTTTGCTGCCAT-TACTGATACTGG
* *
36404973 TAGCTTTGCTG-CGTTACTGTTACTGG
1 TAGCTTTGCTGCCATTACTGATACTGG
*
36404999 CAGCTTTGCTGC
1 TAGCTTTGCTGC
36405011 GATACTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 21 0.64
27 9 0.27
28 3 0.09
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TAGCTTTGCTGCCATTACTGATACTGG
Found at i:36404997 original size:26 final size:26
Alignment explanation
Indices: 36404960--36405043 Score: 105
Period size: 26 Copynumber: 3.2 Consensus size: 26
36404950 TTTCTGCCAT
* *
36404960 ATACTGATACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
36404986 TTACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* * * *
36405012 ATACTATTATTGGCAGCTATGCTTCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
36405038 ATACTG
1 ATACTG
36405044 GTGTGTTGGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:36408446 original size:21 final size:20
Alignment explanation
Indices: 36408407--36408446 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36408397 TGGTCCGTAA
*
36408407 GCCCATTGGGCCCAGTTTTC
1 GCCCATTGGGCCCACTTTTC
*
36408427 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
36408447 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.35, G:0.23, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTC
Found at i:36409857 original size:34 final size:33
Alignment explanation
Indices: 36409797--36409868 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
36409787 TGTTACCGAC
* * *
36409797 ACTGAAATGGGCTAAGGCTCACACTGATACTGA
1 ACTGTAATGGGCTAAGCCTCACACTGAAACTGA
*
36409830 TACTGTAATGGGCTAAGACCTTA-ACTGAAACTGA
1 -ACTGTAATGGGCTAAG-CCTCACACTGAAACTGA
36409864 ACTGT
1 ACTGT
36409869 TACTGATACG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 5 0.15
34 25 0.76
35 3 0.09
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGCCTCACACTGAAACTGA
Found at i:36411928 original size:20 final size:20
Alignment explanation
Indices: 36411882--36411921 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36411872 AAATGGAATA
*
36411882 AAAACATGAATCATTTAGCC
1 AAAACATGAATCATTCAGCC
36411902 AAAACATGAATCATTCAGCC
1 AAAACATGAATCATTCAGCC
36411922 CTAACATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (20 bp):
AAAACATGAATCATTCAGCC
Found at i:36413078 original size:3 final size:3
Alignment explanation
Indices: 36413070--36413112 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
36413060 CTTTGTTTCT
*
36413070 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
36413113 CATTCACTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:36415075 original size:16 final size:14
Alignment explanation
Indices: 36415050--36415088 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
36415040 CTATAAAACC
36415050 TTAT-TTATAAATGT
1 TTATATTATAAAT-T
36415064 TATATATTATAAATT
1 T-TATATTATAAATT
36415079 TTATATTATA
1 TTATATTATA
36415089 CTTAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 5 0.22
16 8 0.35
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TTATATTATAAATT
Found at i:36416029 original size:22 final size:22
Alignment explanation
Indices: 36415986--36416029 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36415976 ATAATTTCAT
**
36415986 TCAATTAATCTATGTTGCCCAA
1 TCAATTAATCTATACTGCCCAA
* *
36416008 TCAATTACTCTATACTGTCCAA
1 TCAATTAATCTATACTGCCCAA
36416030 ACACATCGTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (22 bp):
TCAATTAATCTATACTGCCCAA
Found at i:36420688 original size:33 final size:33
Alignment explanation
Indices: 36420645--36420748 Score: 120
Period size: 33 Copynumber: 3.1 Consensus size: 33
36420635 AAAATACATG
* *
36420645 CAGTAACAGTCTGGGCCTGAGCCTTAT-CTAGTAT
1 CAGT-ACAGTCTGGGCCTGAGCCCTATAC-AGTAA
*
36420679 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
* * * *
36420712 CAGAACAGTTTGGGCTTTAGCCCTATACAGTAA
1 CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
36420745 CAGT
1 CAGT
36420749 GTGGACCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
33 57 0.92
34 5 0.08
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:36420782 original size:33 final size:33
Alignment explanation
Indices: 36420645--36420783 Score: 119
Period size: 33 Copynumber: 4.3 Consensus size: 33
36420635 AAAATACATG
* * *
36420645 CAGTAACAGTCTGGGCCTGAGCCTTAT-CTAGTAT
1 CAGT-ACAGTGTGGGCCTTAGCCCTATAC-AGTAT
* *
36420679 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
* * *
36420712 CAGAACAGTTTGGGCTTTAGCCCTATACAG--T
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
* * *
36420743 -A--ACAGTGTGGACCTAAGCCCAATACAGTAT
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
36420773 CAGTACAGTGT
1 CAGTACAGTGT
36420784 AATGCAATTA
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
28 21 0.24
30 2 0.02
31 1 0.01
33 58 0.67
34 5 0.06
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (33 bp):
CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
Found at i:36421182 original size:27 final size:27
Alignment explanation
Indices: 36421153--36421269 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
36421143 GGCATAATAG
* *
36421153 TCATTTTACCATACAGGGGTATTATGG
1 TCATTTTACCATACAGGGGTATTACGA
* * *
36421180 TCATTTTACTATACAGTGATATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* * * * *
36421207 TTATTTTACCCTATAAGGGCATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* *
36421234 TCATTTTACCCTATAGGGGTATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
*
36421261 TTATTTTAC
1 TCATTTTAC
36421270 AAATAGTGGT
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:36425402 original size:27 final size:27
Alignment explanation
Indices: 36425372--36425515 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 27
36425362 GGGCATAATC
* *
36425372 GTCATTTTACCATATAGTGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* *
36425399 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
36425426 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
36425453 GTTATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
36425480 GTCATTTTACCCTACA-AGGTATTATG
1 GTCATTTTACCCTATAGGGGTATTACG
36425506 GTCATTTTAC
1 GTCATTTTAC
36425516 AAATCAGGGT
Statistics
Matches: 104, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 17 0.16
27 87 0.84
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:36432123 original size:34 final size:34
Alignment explanation
Indices: 36432057--36432123 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
36432047 ACAGTGCATG
**
36432057 CAGTAACAGTCTGGGCCTGAGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAT
*
36432091 CAGT-ACAGTCTGGGCCTTAGCCCCTAAACAGTA
1 CAGTAACAGTCTGGGCCTGAG-CCCTAAACAGTA
36432124 GCGGTGTGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 15 0.52
34 14 0.48
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAT
Found at i:36446561 original size:20 final size:20
Alignment explanation
Indices: 36446538--36446583 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
36446528 TCACACGCCT
*
36446538 GTGTGCTTGGGGACACATCC
1 GTGTGCTTGGGGACACACCC
36446558 GTGTGCTTGGGGACACACCC
1 GTGTGCTTGGGGACACACCC
36446578 GTGTGC
1 GTGTGC
36446584 CCCACCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GTGTGCTTGGGGACACACCC
Found at i:36446562 original size:22 final size:21
Alignment explanation
Indices: 36446529--36446583 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
36446519 GGTTATACCT
36446529 CACACGCCTGTGTGCTTGGGGA
1 CACAC-CCTGTGTGCTTGGGGA
*
36446551 CACATCC-GTGTGCTTGGGGA
1 CACACCCTGTGTGCTTGGGGA
36446571 CACACCC-GTGTGC
1 CACACCCTGTGTGC
36446584 CCCACCTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 25 0.81
21 2 0.06
22 4 0.13
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.22
Consensus pattern (21 bp):
CACACCCTGTGTGCTTGGGGA
Found at i:36460726 original size:48 final size:48
Alignment explanation
Indices: 36460546--36460910 Score: 270
Period size: 48 Copynumber: 7.6 Consensus size: 48
36460536 GTAAATAGCC
* * ** * * *
36460546 GATGCCATGTCCTAGACATGGTCTTACA-TAGGCTCACATGTCCAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GGCTCTCATAACAATGCT
* * * ** * * *
36460594 GATGCCATGTCCTAGACATGGTCTTACACAGGCTCACATGTCCAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* ** * **
36460642 GATGCCATGTCCTAGACATGGTCTTACACTAACTCTCGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * **
36460690 GATTCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAAC-ATTTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * *
36460737 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATAACATTG-T
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * * * *
36460785 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAATATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * * * ** *
36460833 GATGCCATGTTCCAAACATGGTCTTACAATGGCACACATAA-TGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAAT-GCT
* *
36460881 GATGCCATGTCTCGGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
36460911 AGAACACATA
Statistics
Matches: 270, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
47 47 0.17
48 222 0.82
49 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
Found at i:36460741 original size:96 final size:96
Alignment explanation
Indices: 36460543--36460860 Score: 313
Period size: 96 Copynumber: 3.3 Consensus size: 96
36460533 AGGGTAAATA
* * * * * *
36460543 GCCGATGCCATG-TCCTAGACATGGTCTTACA-TAGGCTCACATGTCCAGGCCGATGCCATGTCC
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTA-GCTCTCATATCAATGCTGATGCCATGTCC
* * * ** *
36460606 TAGACATGGTCTTACACAGGCTCACATGTCCA-G
64 CAGACATGGTCTTACACTGGCTCTCAT-AACATT
* * * * *
36460639 GCCGATGCCATG-TCCTAGACATGGTCTTACACTAACTCTCGTCTCAATGCTGATTCCATGTCCC
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATCAATGCTGATGCCATGTCCC
*
36460703 AGATATGGTCTTACACTGGCTCTCATAACATT
65 AGACATGGTCTTACACTGGCTCTCATAACATT
** * * * * *
36460735 TTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATAACATTG-TGATGCCATGTTCCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAATGCTGATGCCATGTCCCA
* * *
36460799 AACATGGTCTTACACTGGCTCTTATAATATT
66 GACATGGTCTTACACTGGCTCTCATAACATT
36460830 GCCGATGCCATGTTCCAAACATGGTCTTACA
1 GCCGATGCCATGTTCCAAACATGGTCTTACA
36460861 ATGGCACACA
Statistics
Matches: 186, Mismatches: 33, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
95 71 0.38
96 110 0.59
97 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (96 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAATGCTGATGCCATGTCCCA
GACATGGTCTTACACTGGCTCTCATAACATT
Found at i:36460836 original size:95 final size:96
Alignment explanation
Indices: 36460543--36460910 Score: 298
Period size: 96 Copynumber: 3.8 Consensus size: 96
36460533 AGGGTAAATA
* * ** * * *
36460543 GCCGATGCCATG-TCCTAGACATGGTCTTACA-TAGGCTCACATGTCCAGGCCGATGCCATGTCC
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACT-GGCTCTCATAACAATGCTGATGCCATGTCC
* * * * ** *
36460606 TAGACATGGTCTTACACAGGCTCACATGTCCA-G
64 CAAACATGGTCTTACACTGGCTCTCAT-AACATT
* ** * ** *
36460639 GCCGATGCCATG-TCCTAGACATGGTCTTACACTAACTCTCGTCTCAATGCTGATTCCATGTCCC
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAACAATGCTGATGCCATGTCCC
* *
36460703 AGATATGGTCTTACACTGGCTCTCATAACATT
65 AAACATGGTCTTACACTGGCTCTCATAACATT
** * * *
36460735 TTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATAACATTG-TGATGCCATGTTCCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACAATGCTGATGCCATGTCCCA
* *
36460799 AACATGGTCTTACACTGGCTCTTATAATATT
66 AACATGGTCTTACACTGGCTCTCATAACATT
* * * ** * *
36460830 GCCGATGCCATGTTCCAAACATGGTCTTACAATGGCACACATAA-TGTGGCCGATGCCATGTCTC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACAAT-GCTGATGCCATGTCCC
**
36460894 GGACATGGTCTTACACT
65 AAACATGGTCTTACACT
36460911 AGAACACATA
Statistics
Matches: 222, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
94 1 0.00
95 81 0.36
96 136 0.61
97 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACAATGCTGATGCCATGTCCCA
AACATGGTCTTACACTGGCTCTCATAACATT
Found at i:36468682 original size:27 final size:27
Alignment explanation
Indices: 36468650--36468743 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 27
36468640 AATGAAAATC
36468650 ACGATAAGCACTAAAGTGCAAAATAAT
1 ACGATAAGCACTAAAGTGCAAAATAAT
* *
36468677 ACGATAAGCA-TCAAAGTGTAAATTTTTTACA-
1 ACGATAAGCACT-AAAGTGCAAA----ATA-AT
** *
36468708 ACGATAAGCACCGAAGTGCGAAATAAT
1 ACGATAAGCACTAAAGTGCAAAATAAT
36468735 ACGATAAGC
1 ACGATAAGC
36468744 GCGTTATTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 16
0.69 0.09 0.21
Matches are distributed among these distances:
26 2 0.04
27 30 0.58
31 19 0.37
32 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (27 bp):
ACGATAAGCACTAAAGTGCAAAATAAT
Found at i:36471426 original size:27 final size:26
Alignment explanation
Indices: 36471378--36471429 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36471368 GCGAGGCTGC
*
36471378 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36471404 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36471430 TTGCGGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36472111 original size:27 final size:27
Alignment explanation
Indices: 36472081--36472199 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
36472071 GGGGCAAAAT
* * *
36472081 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36472108 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36472135 GGTAATTCTATCCAAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
36472162 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36472189 GGTAATTCTAC
1 GGTAATTCTAC
36472200 AACTTATCTA
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 70 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36472138 original size:54 final size:54
Alignment explanation
Indices: 36472080--36472199 Score: 170
Period size: 54 Copynumber: 2.2 Consensus size: 54
36472070 AGGGGCAAAA
* * *
36472080 TGGTAATTTTACCCCACAAGGG-TATCTCGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCAAC-AGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
* *
36472134 TGGTAATTCTATCCAACAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCAACAGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
*
36472188 CGGTAATTCTAC
1 TGGTAATTCTAC
36472200 AACTTATCTA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 4 0.07
54 54 0.93
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (54 bp):
TGGTAATTCTACCCAACAGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:36476243 original size:49 final size:49
Alignment explanation
Indices: 36476171--36476362 Score: 199
Period size: 51 Copynumber: 3.9 Consensus size: 49
36476161 CGAAGCTATT
*
36476171 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTC
* * * *
36476220 TGGTACACGTAGTAGCCTGCACTTAGTTCTACACATGTGACCTCACCA-TC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAACAGTC
** * * * * *
36476270 TAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG---TC
* *
36476321 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
36476363 TCACAATAGA
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 36 0.31
50 39 0.33
51 40 0.34
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTC
Found at i:36476353 original size:101 final size:99
Alignment explanation
Indices: 36476180--36476366 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
36476170 TTGGTACGCA
* * *
36476180 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
* *
36476245 GTTCTACACATGTGACCTCACCATCTAATACACG
66 GTACTACACATGCGACCTCACCATCTAATACACG
* * * *
36476279 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
36476343 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACATGCGACCTCAC
36476367 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCTCACCATCTAATACACG
Found at i:36481518 original size:27 final size:26
Alignment explanation
Indices: 36481470--36481521 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36481460 GCGAGGCTGC
*
36481470 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36481496 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36481522 TTGCGGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36482206 original size:27 final size:27
Alignment explanation
Indices: 36482176--36482294 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
36482166 GAGGCAGAAT
* * * *
36482176 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36482203 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36482230 AGTAATTATATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36482257 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36482284 GGTAATTCTAC
1 GGTAATTCTAC
36482295 AACTTATCCA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36484228 original size:37 final size:37
Alignment explanation
Indices: 36484166--36484237 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
36484156 AGCTCAGACG
* * *
36484166 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
*
36484203 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGA
36484238 ATATATTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
Found at i:36484521 original size:47 final size:47
Alignment explanation
Indices: 36484443--36484776 Score: 506
Period size: 47 Copynumber: 7.1 Consensus size: 47
36484433 ATATATATTC
* * * * * *
36484443 CACATTGACCATTTGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* *
36484490 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
*
36484537 CACATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
*
36484584 CACATAGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* * *
36484631 CACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* *
36484678 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* **
36484725 CACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
36484772 CACAT
1 CACAT
36484777 AAAATCCTAA
Statistics
Matches: 262, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 262 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
Found at i:36484610 original size:22 final size:22
Alignment explanation
Indices: 36484582--36484658 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
36484572 GTTCACATTC
36484582 ATCACATAGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
* * *
36484604 ATCACATATATG-CATGTTC-ACATT
1 ATCAC--ATAGGCCA--TTCGGCCTT
36484628 CATCACATAGGCCATTCGGCCTT
1 -ATCACATAGGCCATTCGGCCTT
36484651 ATCACATA
1 ATCACATA
36484659 TATGCATGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 16 0.38
23 9 0.21
24 9 0.21
25 8 0.19
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:36488749 original size:16 final size:17
Alignment explanation
Indices: 36488730--36488768 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
36488720 ATTGTAACGC
*
36488730 CCCAAAAATCTCGAAA-
1 CCCAAAAATCCCGAAAT
36488746 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
36488763 CCCAAA
1 CCCAAA
36488769 TTTTCTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:36490186 original size:29 final size:28
Alignment explanation
Indices: 36490131--36490245 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
36490121 GTGAGCATGA
* * *
36490131 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
36490159 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * **
36490188 ATATACAGGTGATTTGGGCCTAATAAGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
36490217 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
36490245 A
1 A
36490246 GATACAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 25 0.35
29 47 0.65
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:36492911 original size:4 final size:4
Alignment explanation
Indices: 36492902--36492926 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
36492892 ACCATTTTCA
36492902 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
36492927 TTTATTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:36501731 original size:45 final size:45
Alignment explanation
Indices: 36501641--36501758 Score: 191
Period size: 45 Copynumber: 2.6 Consensus size: 45
36501631 TATAATGTCG
* *
36501641 ATGCCATGTCCTAGACATGATCTTACACTGGCTCTTATCTTAAGTCA
1 ATGCCATGTCCTAGACATGGTCTT--ACTGGCTCATATCTTAAGTCA
36501688 ATGCCATGTCCTAGACATGGTCTTACTGGCTCATATCTTAAGTCA
1 ATGCCATGTCCTAGACATGGTCTTACTGGCTCATATCTTAAGTCA
*
36501733 ATGCCATGTCCTAGGCATGGTCTTAC
1 ATGCCATGTCCTAGACATGGTCTTAC
36501759 ACTGACTATC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
45 45 0.66
47 23 0.34
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (45 bp):
ATGCCATGTCCTAGACATGGTCTTACTGGCTCATATCTTAAGTCA
Found at i:36501792 original size:49 final size:49
Alignment explanation
Indices: 36501733--36501861 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 49
36501723 TCTTAAGTCA
* *
36501733 ATGCCATGTCCTAGGCATGGTCTTACACT-GACTATCGTC-AT-TGACGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTAG-CTATC-ACAATCTG-CGCCG
* *
36501782 ATGCCATGTCCTAGACAAGGTCTTACACTAGCTCTCACATATCTGCGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCTATCACA-ATCTGCGCCG
*
36501832 ATGCCATGTCCCAGACATGGTCTTACACTA
1 ATGCCATGTCCTAGACATGGTCTTACACTA
36501862 ACACATCTCG
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
48 1 0.01
49 31 0.44
50 36 0.51
51 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCTAGACATGGTCTTACACTAGCTATCACAATCTGCGCCG
Found at i:36501893 original size:45 final size:44
Alignment explanation
Indices: 36501828--36501956 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 44
36501818 ACATATCTGC
* *
36501828 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACATCTC-AAG
* * * *
36501874 GCCGATGCATGTCCCAGACATGTCTTTCAGTGGCTTACGTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCAAG
36501920 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACA
36501957 CAAATGACCC
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.16
45 15 0.21
46 44 0.63
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCAAG
Found at i:36505769 original size:5 final size:5
Alignment explanation
Indices: 36505759--36505813 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
36505749 AGTTAAATAA
36505759 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
36505809 ATATT
1 ATATT
36505814 GGTGCAAGCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:36510244 original size:33 final size:33
Alignment explanation
Indices: 36510202--36510269 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
36510192 CAAAAGTGTA
36510202 TAAATTTCGAAATTGATATAAAATTATTATTAT
1 TAAATTTCGAAATTGATATAAAATTATTATTAT
36510235 TAAATTTCGAAATTGATATAAAATTATTATTAT
1 TAAATTTCGAAATTGATATAAAATTATTATTAT
36510268 TA
1 TA
36510270 TTGATAGTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (33 bp):
TAAATTTCGAAATTGATATAAAATTATTATTAT
Found at i:36526445 original size:23 final size:23
Alignment explanation
Indices: 36526415--36526461 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
36526405 TCTGCTACTG
36526415 ACATATCA-CTCTAAACCAAATCC
1 ACATATCACCT-TAAACCAAATCC
36526438 ACATATCACCTTAAACCAAATCC
1 ACATATCACCTTAAACCAAATCC
36526461 A
1 A
36526462 GAAACTCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (23 bp):
ACATATCACCTTAAACCAAATCC
Found at i:36532526 original size:73 final size:72
Alignment explanation
Indices: 36532400--36532659 Score: 207
Period size: 73 Copynumber: 3.6 Consensus size: 72
36532390 AATAAACTAA
* * * * *
36532400 CGTCGTGGTGTCACACCATAGATTTGATAGGCCGTTGTCATAGCAT-TGTTCTAGCGAGCTAGTT
1 CGTCGTGGTGTCACTCCATAAAATTGATAGGCCATTGTCAT-G-ATGTGCTCTAGCGAGCTAGTT
* *
36532464 AATAACCAT
64 GATAACCAC
* * * * * *
36532473 TGTCGTGGTTTCACTCCATAAAGTCGATAGGCCATTGTCATGATGTCGCTCTAGAGAGCTAGTCG
1 CGTCGTGGTGTCACTCCATAAAATTGATAGGCCATTGTCATGATGT-GCTCTAGCGAGCTAGTTG
*
36532538 ATAACTAC
65 ATAACCAC
* * ** ** *
36532546 CATCGTGGTGTCATTCCATAAAATTGATAGATCATTGTCACAAAGTTGCTCTAGCGAGCTAGTTG
1 CGTCGTGGTGTCACTCCATAAAATTGATAGGCCATTGTCATGATG-TGCTCTAGCGAGCTAGTTG
*
36532611 ATAACCGC
65 ATAACCAC
** * * * * * *
36532619 CGTCCCGGTGTCGCTTCATAGAGTCGATAGGCCATCGTCAT
1 CGTCGTGGTGTCACTCCATAAAATTGATAGGCCATTGTCAT
36532660 AACGTCACTC
Statistics
Matches: 143, Mismatches: 41, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
71 2 0.01
72 2 0.01
73 138 0.97
74 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (72 bp):
CGTCGTGGTGTCACTCCATAAAATTGATAGGCCATTGTCATGATGTGCTCTAGCGAGCTAGTTGA
TAACCAC
Found at i:36534016 original size:114 final size:113
Alignment explanation
Indices: 36533811--36534040 Score: 336
Period size: 114 Copynumber: 2.0 Consensus size: 113
36533801 CAATATTGGT
* * *
36533811 ATACTAAGCTCTACTTCATCTCCGTTGACCATTTTATTACCATTATTTCTTGTCAGTTGACTCTA
1 ATACTAAGCTCTACTTAATCTCCGTTGACCATTTTATTACCATTATTTCTTATCAGTTGACTCCA
*
36533876 AATGGATGCTCAATGTTAGCTCTTTAT-TTTTTTAAATTTTTTTTGGTGA
66 AATGGATGCTCAATGTTAGCTCTTTATATTTTTT--ACTTTTTTTGGTGA
* * * *
36533925 ATACTAGGCTCTACTTAATCTTCGTTGACCATTTTATTACCATTATTTCTTATTAGTTGTCTCCA
1 ATACTAAGCTCTACTTAATCTCCGTTGACCATTTTATTACCATTATTTCTTATCAGTTGACTCCA
** *
36533990 AATGGATGCTCAATGTTATTTTTTTATATTTTTTACTTTTTTTGGTGA
66 AATGGATGCTCAATGTTAGCTCTTTATATTTTTTACTTTTTTTGGTGA
36534038 ATA
1 ATA
36534041 GGGAAAAAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
113 16 0.15
114 82 0.79
115 6 0.06
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.49
Consensus pattern (113 bp):
ATACTAAGCTCTACTTAATCTCCGTTGACCATTTTATTACCATTATTTCTTATCAGTTGACTCCA
AATGGATGCTCAATGTTAGCTCTTTATATTTTTTACTTTTTTTGGTGA
Found at i:36535929 original size:25 final size:25
Alignment explanation
Indices: 36535896--36535959 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
36535886 ATTTCACAAC
*
36535896 TCGTGTGAGCATTTACAGTTACAGA
1 TCGTGTGAGCATTTACAATTACAGA
* *
36535921 TCGTCTGAGCATTTACAATTACAGC
1 TCGTGTGAGCATTTACAATTACAGA
*
36535946 TCGTGTAAGCATTT
1 TCGTGTGAGCATTT
36535960 TCCTGTGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (25 bp):
TCGTGTGAGCATTTACAATTACAGA
Found at i:36542768 original size:27 final size:27
Alignment explanation
Indices: 36542737--36543037 Score: 392
Period size: 27 Copynumber: 11.2 Consensus size: 27
36542727 TTAGTTTACC
**
36542737 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36542764 AAATTACTAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
36542791 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
36542818 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
36542845 AAGTTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36542872 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
36542899 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
36542926 AAATTACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
36542952 AAATTACCAAAA-ACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36542978 AAATTATCAAAATACCCATAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36543005 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
36543032 AAATTA
1 AAATTA
36543038 TTGAAATACC
Statistics
Matches: 238, Mismatches: 32, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
25 1 0.00
26 51 0.21
27 183 0.77
28 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36543044 original size:27 final size:27
Alignment explanation
Indices: 36542737--36543120 Score: 379
Period size: 27 Copynumber: 14.3 Consensus size: 27
36542727 TTAGTTTACC
*
36542737 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
36542764 AAATTACTAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
36542791 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * **
36542818 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
36542845 AAGTTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * *
36542872 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
*
36542899 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
36542926 AAATTACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
36542952 AAATTACCAAAA-ACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
36542978 AAATTATCAAAATACCCAT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
36543005 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*** *
36543032 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
36543059 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
36543086 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
36543113 GAATTACC
1 AAATTACC
36543121 GTTTTACCCT
Statistics
Matches: 305, Mismatches: 40, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
25 1 0.00
26 57 0.19
27 239 0.78
28 8 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:36543177 original size:27 final size:27
Alignment explanation
Indices: 36543141--36543344 Score: 268
Period size: 27 Copynumber: 7.6 Consensus size: 27
36543131 CAATTTACAA
* *
36543141 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
36543168 AAATATCGAAATACCCCTGTAGAGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
36543195 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
*
36543222 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
36543249 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
36543276 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
36543303 AATTA-CTAAAATACCCCTGTAGGGTGG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
36543330 AATTACCGAGATACC
1 AATTATCGAAATACC
36543345 TCGTGGGGTA
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
26 2 0.01
27 154 0.97
28 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:36543839 original size:22 final size:22
Alignment explanation
Indices: 36543788--36543848 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
36543778 TAAAACCTTT
* **
36543788 TGATTATGGCTTTGTGTTAACC
1 TGATTATGGCTCTGTGCCAACC
*
36543810 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
*
36543832 TGATTATGGCTGTGTGC
1 TGATTATGGCTCTGTGC
36543849 TAAACGTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.38
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:36544041 original size:27 final size:27
Alignment explanation
Indices: 36544011--36544111 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
36544001 TTCTGTTAAG
* *
36544011 TGGCTTTGCCACATTATCTGTTTCTGA
1 TGGCTATGCCACAATATCTGTTTCTGA
* *
36544038 TGGCTATGCCATAAATATCTG-TTCTGG
1 TGGCTATGCCA-CAATATCTGTTTCTGA
* * *
36544065 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTATGCCACAATATCTGTTTCTGA
* * *
36544092 TGACTCTGTCACAATATCTG
1 TGGCTATGCCACAATATCTG
36544112 ATACCTGAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGCTATGCCACAATATCTGTTTCTGA
Found at i:36544286 original size:6 final size:6
Alignment explanation
Indices: 36544271--36544367 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
36544261 ATTCTGTTAC
* * * *
36544271 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
36544320 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
36544368 AATGTTTCTT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
5 4 0.06
6 59 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:36544351 original size:31 final size:31
Alignment explanation
Indices: 36544259--36544383 Score: 146
Period size: 31 Copynumber: 4.1 Consensus size: 31
36544249 TTCTAATTTT
*
36544259 TGATTCTGTTACCTGATACTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
*
36544290 TGATTCTGTTACCTGATACTAATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
36544321 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * * *
36544352 TAATTCTAGTT--CTGATAATGTTTCTTATTC
1 TGATTCT-GTTACCTGATACTGATTCTGATTC
36544382 TG
1 TG
36544384 TAATGGGTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
30 15 0.19
31 62 0.78
32 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:36560801 original size:50 final size:52
Alignment explanation
Indices: 36560742--36560860 Score: 161
Period size: 50 Copynumber: 2.3 Consensus size: 52
36560732 TTAATAAAGT
* * *
36560742 CATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATC-GTAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTAGCATCAGTAAATTAAGA
* * *
36560792 CATGCATTATGTAATTCCCATGTTAGTTAAAGTTAGCATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTAGCATCAGTAAATTAAGA
*
36560844 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
36560861 ATTTGTTCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
50 26 0.44
51 10 0.17
52 23 0.39
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTAAAGTTAGCATCAGTAAATTAAGA
Found at i:36563102 original size:54 final size:55
Alignment explanation
Indices: 36562950--36563095 Score: 181
Period size: 55 Copynumber: 2.7 Consensus size: 55
36562940 TTTTCCCCAC
* * * *
36562950 ATGATGCAATAGTCCCAAACTAGGTCTTACACTATGTGGT-TT-TCTATCCCTGT
1 ATGATGCCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCACTATCCCTAT
* * * *
36563003 ATGATGTCATAGCCACCATGACTAGGTCTTACACTATATGGTCTTCACT-TTCCTAT
1 ATGATGCCATAGTC-CCA-AACTAGGTCTTACACTATATGGTCTTCACTATCCCTAT
36563059 ATGATGCCATAGTCCCAAACTAGGTCTTACACTATAT
1 ATGATGCCATAGTCCCAAACTAGGTCTTACACTATAT
36563096 ACTCTTCTTG
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
53 11 0.14
54 22 0.28
55 24 0.31
56 19 0.24
57 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (55 bp):
ATGATGCCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCACTATCCCTAT
Found at i:36564706 original size:24 final size:24
Alignment explanation
Indices: 36564679--36564726 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36564669 GACACAAAGA
36564679 AGTGTCAGGTGAGTTTTTATACTT
1 AGTGTCAGGTGAGTTTTTATACTT
36564703 AGTGTCAGGTGAGTTTTTATACTT
1 AGTGTCAGGTGAGTTTTTATACTT
36564727 CAACCCTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (24 bp):
AGTGTCAGGTGAGTTTTTATACTT
Found at i:36568601 original size:28 final size:27
Alignment explanation
Indices: 36568540--36568604 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 27
36568530 GTTTAGTACC
* *
36568540 CCGATAGACCTACCTCGTGTTTACTGT
1 CCGATAGACCTACCTCATGTTTACTAT
36568567 CCTGATAGACCTACCTCATGTTTACTAT
1 CC-GATAGACCTACCTCATGTTTACTAT
36568595 CTCGATAGAC
1 C-CGATAGAC
36568605 TTACTCCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.06
28 31 0.91
29 1 0.03
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (27 bp):
CCGATAGACCTACCTCATGTTTACTAT
Found at i:36568896 original size:56 final size:56
Alignment explanation
Indices: 36568827--36568962 Score: 254
Period size: 56 Copynumber: 2.4 Consensus size: 56
36568817 ATATCAAGCC
*
36568827 GTCATGGCGTCTTTCATCTATGGTCTTAAGCCCTTATCATTTTCGTGTACCATGCT
1 GTCATGACGTCTTTCATCTATGGTCTTAAGCCCTTATCATTTTCGTGTACCATGCT
36568883 GTCATGACGTCTTTCATCTATGGTCTTAAGCCCTTATCATTTTCGTGTACCATGCT
1 GTCATGACGTCTTTCATCTATGGTCTTAAGCCCTTATCATTTTCGTGTACCATGCT
*
36568939 GTCATGACGTCTTTCATCCATGGT
1 GTCATGACGTCTTTCATCTATGGT
36568963 TTTATGCTAC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (56 bp):
GTCATGACGTCTTTCATCTATGGTCTTAAGCCCTTATCATTTTCGTGTACCATGCT
Found at i:36572665 original size:7 final size:7
Alignment explanation
Indices: 36572644--36572691 Score: 69
Period size: 7 Copynumber: 6.6 Consensus size: 7
36572634 GTTGAGGCAC
36572644 CCCTAAAA
1 CCCT-AAA
36572652 CCCTAAA
1 CCCTAAA
*
36572659 CCTTAAA
1 CCCTAAA
36572666 CCCTAAAA
1 CCCT-AAA
36572674 CCCTAAA
1 CCCTAAA
36572681 CCCTAAA
1 CCCTAAA
36572688 CCCT
1 CCCT
36572692 TCACCCGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
7 26 0.70
8 11 0.30
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (7 bp):
CCCTAAA
Found at i:36572671 original size:22 final size:22
Alignment explanation
Indices: 36572644--36572691 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
36572634 GTTGAGGCAC
*
36572644 CCCTAAAACCCTAAACCTTAAA
1 CCCTAAAACCCTAAACCCTAAA
36572666 CCCTAAAACCCTAAACCCTAAA
1 CCCTAAAACCCTAAACCCTAAA
36572688 CCCT
1 CCCT
36572692 TCACCCGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (22 bp):
CCCTAAAACCCTAAACCCTAAA
Found at i:36572674 original size:15 final size:15
Alignment explanation
Indices: 36572649--36572692 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
36572639 GGCACCCCTA
36572649 AAACCCT-AAACCTT
1 AAACCCTAAAACCTT
*
36572663 AAACCCTAAAACCCT
1 AAACCCTAAAACCTT
*
36572678 AAACCCTAAACCCTT
1 AAACCCTAAAACCTT
36572693 CACCCGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (15 bp):
AAACCCTAAAACCTT
Found at i:36572697 original size:14 final size:14
Alignment explanation
Indices: 36572650--36572697 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
36572640 GCACCCCTAA
36572650 AACCCTAAA-CCTT
1 AACCCTAAACCCTT
*
36572663 AAACCCTAAAACCCTA
1 -AACCCT-AAACCCTT
36572679 AACCCTAAACCCTT
1 AACCCTAAACCCTT
*
36572693 CACCC
1 AACCC
36572698 GTGTGGTTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 17 0.59
15 9 0.31
16 3 0.10
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.17
Consensus pattern (14 bp):
AACCCTAAACCCTT
Found at i:36573730 original size:48 final size:48
Alignment explanation
Indices: 36573599--36573733 Score: 137
Period size: 48 Copynumber: 2.8 Consensus size: 48
36573589 GTAAATTGCT
* * * * * *
36573599 GATGCCATGTACCATACATTGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATCTCGAGGCC
* * * * * * *
36573647 AATACCATGTCCCAGACATGGCCTTACAT-TAGCTCTCGTCTTGATGCC
1 GATGCCATGTCCCAGACATGGTCTTAC-TCTGGCTCTCATCTCGAGGCC
36573695 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCAT
36573734 AACATTGTTG
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
47 1 0.01
48 66 0.99
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATCTCGAGGCC
Found at i:36573752 original size:48 final size:48
Alignment explanation
Indices: 36573694--36573878 Score: 271
Period size: 48 Copynumber: 3.9 Consensus size: 48
36573684 GTCTTGATGC
* * *
36573694 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
* * * *
36573742 TGATGTCATGTTCCAAACATGGTCTTAAAGTGGCTCTCATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
** * *
36573790 CGATGCCATGTTCCAAATGTGGTCCTACACAGGCTCTCATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
36573838 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
36573879 TCACCCAAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
Found at i:36587034 original size:34 final size:34
Alignment explanation
Indices: 36586994--36587104 Score: 150
Period size: 34 Copynumber: 3.3 Consensus size: 34
36586984 GAAGTACATA
*
36586994 AATATATATGTATGGCTTGGCATAATTGAAGGTG
1 AATATATATGTATGGCTTGGTATAATTGAAGGTG
* * *
36587028 ATTATATATGTATAGCTTGGTATAATTGAAAGTG
1 AATATATATGTATGGCTTGGTATAATTGAAGGTG
* * **
36587062 AATATATATGTATGGTTTGTTATAACCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATTGAAGGTG
36587096 AATATATAT
1 AATATATAT
36587105 ATACATTTAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.39
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGTATAATTGAAGGTG
Found at i:36587304 original size:59 final size:61
Alignment explanation
Indices: 36587177--36587314 Score: 167
Period size: 59 Copynumber: 2.3 Consensus size: 61
36587167 TAAGCTTGAG
* * * *
36587177 ATGAGCACTAAGTGTGCGAAATGAAATTGGTACTGAGTACTAAGTGTACGAAATTGGTCAT
1 ATGAGCACTAAGTGTGCGAAATGAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
* * * *
36587238 TTG-GCACTAAGTGTGC-AAATTG-AATTTATACCGAGTACTAAGTGTACGAGATCGATTA-
1 ATGAGCACTAAGTGTGCGAAA-TGAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
36587296 ATGAGCACTAAGTGTGCGA
1 ATGAGCACTAAGTGTGCGA
36587315 GTTTATCTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
58 2 0.03
59 45 0.69
60 16 0.25
61 2 0.03
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (61 bp):
ATGAGCACTAAGTGTGCGAAATGAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
Found at i:36590755 original size:46 final size:46
Alignment explanation
Indices: 36590703--36590924 Score: 243
Period size: 46 Copynumber: 4.8 Consensus size: 46
36590693 TGTAACCCGC
* * * *
36590703 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
36590749 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * * *
36590795 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
36590842 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
36590888 CCATAAGTGAACTCTGATTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
36590925 TGCCCAAACA
Statistics
Matches: 149, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
46 111 0.74
47 30 0.20
49 4 0.03
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:36597067 original size:46 final size:46
Alignment explanation
Indices: 36597017--36597192 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
36597007 TGGTTGAGCA
*
36597017 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36597063 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36597108 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36597156 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36597193 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36597173 original size:93 final size:93
Alignment explanation
Indices: 36597014--36597185 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
36597004 GGATGGTTGA
* *
36597014 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36597079 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
36597107 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36597172 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36597186 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36604167 original size:46 final size:46
Alignment explanation
Indices: 36604117--36604292 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36604107 TGGTTGAGCA
36604117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36604163 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36604208 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36604256 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36604293 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36604273 original size:93 final size:93
Alignment explanation
Indices: 36604114--36604285 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36604104 GGATGGTTGA
* *
36604114 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36604179 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36604207 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36604272 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36604286 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36605951 original size:37 final size:37
Alignment explanation
Indices: 36605910--36605990 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
36605900 ATGGTAGCCC
*
36605910 ACATTTTCGATATTTTTCTCATTTCCACCACACATTT
1 ACATTTTCCATATTTTTCTCATTTCCACCACACATTT
36605947 ACATTTTCCATATTTTTCTCATTTCCACCACACATTT
1 ACATTTTCCATATTTTTCTCATTTCCACCACACATTT
36605984 ACATTTT
1 ACATTTT
36605991 TTGCATGAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.27, G:0.01, T:0.47
Consensus pattern (37 bp):
ACATTTTCCATATTTTTCTCATTTCCACCACACATTT
Done.