Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 111 of 295
Found at i:36607948 original size:48 final size:48
Alignment explanation
Indices: 36607896--36608064 Score: 232
Period size: 48 Copynumber: 3.5 Consensus size: 48
36607886 GTCTCGATGT
* *
36607896 CGATGCCATGTCCCAGACATGGTCTTACTCTAGCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACTCTAGCTCTCATAACATTGC
* * *
36607944 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACTCTAGCTCTCATAACATTGC
* * * * *
36607992 CGATGTCATGTTCCAAACATGGTCTTACAT-TGGTTCTCATAACAATGT
1 CGATGCCATGTTCCAAACATGGTCTTAC-TCTAGCTCTCATAACATTGC
36608040 CGATGCCATGTTCCAAACATGGTCT
1 CGATGCCATGTTCCAAACATGGTCT
36608065 GATGCCATGT
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACTCTAGCTCTCATAACATTGC
Found at i:36607962 original size:23 final size:23
Alignment explanation
Indices: 36607936--36608011 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
36607926 TAGCTCTCAT
36607936 AACATTGCCGATGTCATGTTCCA
1 AACATTGCCGATGTCATGTTCCA
* * *
36607959 AACATGGTC--T-TACACTGGCTCTCA
1 AACATTGCCGATGT-CA-T-GTTC-CA
36607983 TAACATTGCCGATGTCATGTTCCA
1 -AACATTGCCGATGTCATGTTCCA
36608007 AACAT
1 AACAT
36608012 GGTCTTACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
20 1 0.03
21 3 0.08
22 1 0.03
23 15 0.38
24 4 0.10
25 10 0.26
26 1 0.03
27 3 0.08
28 1 0.03
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (23 bp):
AACATTGCCGATGTCATGTTCCA
Found at i:36608014 original size:96 final size:96
Alignment explanation
Indices: 36607850--36608064 Score: 254
Period size: 96 Copynumber: 2.2 Consensus size: 96
36607840 TAAATTACCA
* * * * ** * *
36607850 ATGTCATGTCCCATACATGGTCTTATACTAGCTCTCGTCTCGATGTCGATGCCATGTCCCAGACA
1 ATGTCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACGATGCCGATGCCATGTCCCAAACA
*
36607915 TGGTCTTAC-TCTAGCTCTCATAACATTGCCG
66 TGGTCTTACAT-TAGCTCTCATAACAATGCCG
* * *
36607946 ATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC-ATTGCCGATGTCATGTTCCAAAC
1 ATGTCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACGA-TGCCGATGCCATGTCCCAAAC
* * *
36608010 ATGGTCTTACATTGGTTCTCATAACAATGTCG
65 ATGGTCTTACATTAGCTCTCATAACAATGCCG
*
36608042 ATGCCATGTTCCAAACATGGTCT
1 ATGTCATGTTCCAAACATGGTCT
36608065 GATGCCATGT
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
95 1 0.01
96 99 0.98
97 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.33
Consensus pattern (96 bp):
ATGTCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACGATGCCGATGCCATGTCCCAAACA
TGGTCTTACATTAGCTCTCATAACAATGCCG
Found at i:36608068 original size:24 final size:24
Alignment explanation
Indices: 36608041--36608088 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36608031 TAACAATGTC
36608041 GATGCCATGTTCCAAACATGGTCT
1 GATGCCATGTTCCAAACATGGTCT
36608065 GATGCCATGTTCCAAACATGGTCT
1 GATGCCATGTTCCAAACATGGTCT
36608089 TACACTGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (24 bp):
GATGCCATGTTCCAAACATGGTCT
Found at i:36609414 original size:48 final size:47
Alignment explanation
Indices: 36609356--36609492 Score: 150
Period size: 48 Copynumber: 2.9 Consensus size: 47
36609346 CATAGGTAAA
* * * *
36609356 AATAATAGTGTCTAGTTACCTGTTTGCGTTAAACCTACATGAATAATT
1 AATAATAGTGTCTGGTTACCTGTTAG-GTTAAACCTACATAAATAATG
* *
36609404 AATAATAGTGTCTGGTTA-CTCGTCAAGGTTAAACCTACACAAATAATG
1 AATAATAGTGTCTGGTTACCT-GT-TAGGTTAAACCTACATAAATAATG
* **
36609452 AATAATAGTGTTTGGTTACCCCTTAGGGTTAAACCTACATA
1 AATAATAGTGTCTGGTTACCTGTTA-GGTTAAACCTACATA
36609493 GTAGATAGTT
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
47 3 0.04
48 69 0.93
49 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (47 bp):
AATAATAGTGTCTGGTTACCTGTTAGGTTAAACCTACATAAATAATG
Found at i:36618034 original size:32 final size:32
Alignment explanation
Indices: 36617991--36618083 Score: 159
Period size: 32 Copynumber: 2.9 Consensus size: 32
36617981 TGTCAATCAT
*
36617991 TTCAATTTCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
36618023 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
36618055 TTAAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
36618084 CAATATCTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:36618107 original size:27 final size:27
Alignment explanation
Indices: 36618058--36618110 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36618048 TAATAAATTA
*
36618058 AATATCTAACAAGCTTAAAACATAATC
1 AATATCTAACAAGATTAAAACATAATC
*
36618085 AATATCTAACAA-ATTCAAGACATAAT
1 AATATCTAACAAGATT-AAAACATAAT
36618111 AATTTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.53, C:0.17, G:0.04, T:0.26
Consensus pattern (27 bp):
AATATCTAACAAGATTAAAACATAATC
Found at i:36618109 original size:59 final size:62
Alignment explanation
Indices: 36618001--36618122 Score: 144
Period size: 59 Copynumber: 2.0 Consensus size: 62
36617991 TTCAATTTCC
*
36618001 AACAAGCTTAAAACATAATAAATTCAATATCCAACAAGCTTAAAACATAATAAATTAAATATCT
1 AACAAGCTTAAAAC--AATAAATTCAATATCCAACAAGATTAAAACATAATAAATTAAATATCT
* * * *
36618065 AACAAGCTTAAAAC-AT-AA-TCAATATCTAACAA-ATTCAAGACATAATAATTTCAATATC
1 AACAAGCTTAAAACAATAAATTCAATATCCAACAAGATT-AAAACATAATAAATTAAATATC
36618123 ATTATCCAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
58 2 0.04
59 32 0.62
60 2 0.04
61 2 0.04
64 14 0.27
ACGTcount: A:0.53, C:0.16, G:0.03, T:0.27
Consensus pattern (62 bp):
AACAAGCTTAAAACAATAAATTCAATATCCAACAAGATTAAAACATAATAAATTAAATATCT
Found at i:36618119 original size:32 final size:31
Alignment explanation
Indices: 36617991--36618122 Score: 130
Period size: 32 Copynumber: 4.3 Consensus size: 31
36617981 TGTCAATCAT
* *
36617991 TTCAATTTCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTT-AAACATAATAAA
*
36618023 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTT-AAACATAATAAA
* *
36618055 TTAAATATCTAACAAGCTTAAA-A-CAT-AA
1 TTCAATATCTAACAAGCTTAAACATAATAAA
* *
36618083 -TCAATATCTAACAA-ATTCAAGACATAATAAT
1 TTCAATATCTAACAAGCTT-AA-ACATAATAAA
36618114 TTCAATATC
1 TTCAATATC
36618123 ATTATCCAAC
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.02
27 15 0.17
28 3 0.03
29 3 0.03
30 3 0.03
31 4 0.05
32 56 0.65
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (31 bp):
TTCAATATCTAACAAGCTTAAACATAATAAA
Found at i:36625154 original size:17 final size:16
Alignment explanation
Indices: 36625132--36625184 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
36625122 TTTTCAATAG
36625132 ACAGATGCAAAATCCAA
1 ACAGATGCAAAA-CCAA
*
36625149 ACAGAT--TAAA-CAA
1 ACAGATGCAAAACCAA
36625162 ACAGATGCAAAACCCAA
1 ACAGATGCAAAA-CCAA
36625179 ACAGAT
1 ACAGAT
36625185 TCTTCAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 9 0.30
15 6 0.20
17 15 0.50
ACGTcount: A:0.55, C:0.23, G:0.11, T:0.11
Consensus pattern (16 bp):
ACAGATGCAAAACCAA
Found at i:36626667 original size:46 final size:46
Alignment explanation
Indices: 36626600--36626774 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
36626590 TGTAACCCGC
36626600 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
36626646 CCATAAGTGAACTCAGACTCAA-TCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
36626691 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
36626738 CCAAAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
36626775 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
45 19 0.18
46 68 0.64
47 19 0.18
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:36626719 original size:92 final size:93
Alignment explanation
Indices: 36626608--36626777 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
36626598 GCCCATAAGT
* *
36626608 GAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAA-TCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAAAAGTGAACTCAGACTCAACTCAA
36626672 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
36626700 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAAAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAAAAGTGAACTCAGACTCAACTCAA
36626765 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36626778 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 56 0.77
93 17 0.23
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAAAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:36628762 original size:30 final size:28
Alignment explanation
Indices: 36628715--36628793 Score: 70
Period size: 31 Copynumber: 2.7 Consensus size: 28
36628705 CACTGGCGGA
* *
36628715 ACTTAAA-AAAAAATTTAACAGTTTAAT
1 ACTTAAATAAAAATTTTAACAGTTCAAT
* *
36628742 GACTTAAATAAAAACTTTTAAATAGTTCAGT
1 -ACTTAAATAAAAA-TTTT-AACAGTTCAAT
36628773 AGCTTAAATAAAAAATTTTAA
1 A-CTTAAAT-AAAAATTTTAA
36628794 ATAATTTAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 7 0.17
29 5 0.12
30 6 0.14
31 19 0.45
32 5 0.12
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.34
Consensus pattern (28 bp):
ACTTAAATAAAAATTTTAACAGTTCAAT
Found at i:36631092 original size:9 final size:9
Alignment explanation
Indices: 36631078--36631114 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36631068 TATAGCTTGG
36631078 TATTCAATT
1 TATTCAATT
*
36631087 TATTCAAAT
1 TATTCAATT
*
36631096 TATTCAAGT
1 TATTCAATT
36631105 TATTCAATT
1 TATTCAATT
36631114 T
1 T
36631115 GAAAATCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (9 bp):
TATTCAATT
Found at i:36632758 original size:43 final size:43
Alignment explanation
Indices: 36632711--36632806 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
36632701 TGATTATGTA
* *
36632711 TAAGACCATGT-TTGGGACATTGACATCATTATGTGATTACATG
1 TAAGACCATATCTT-GGAAATTGACATCATTATGTGATTACATG
* ** * *
36632754 TAAGACCATATCTTGGAAATTGGCATTGTTATTTGATTTCATG
1 TAAGACCATATCTTGGAAATTGACATCATTATGTGATTACATG
36632797 TAAGACCATA
1 TAAGACCATA
36632807 GTTGGGCTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 43 0.96
44 2 0.04
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (43 bp):
TAAGACCATATCTTGGAAATTGACATCATTATGTGATTACATG
Found at i:36634774 original size:12 final size:12
Alignment explanation
Indices: 36634757--36634783 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36634747 ATACACTCTT
36634757 GTGTGCTAGGCC
1 GTGTGCTAGGCC
36634769 GTGTGCTAGGCC
1 GTGTGCTAGGCC
36634781 GTG
1 GTG
36634784 CCAAACCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:36636925 original size:24 final size:24
Alignment explanation
Indices: 36636881--36636927 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
36636871 GATGGACAGT
*
36636881 AACGGTAAGCTCTGATAAGCTGAA
1 AACGGTAAGCTCTGACAAGCTGAA
* *
36636905 AACGGTAAGCTCTTACGAGCTGA
1 AACGGTAAGCTCTGACAAGCTGA
36636928 TATATCAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (24 bp):
AACGGTAAGCTCTGACAAGCTGAA
Found at i:36637477 original size:40 final size:40
Alignment explanation
Indices: 36637433--36637513 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
36637423 CCGAATTTAA
36637433 TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
1 TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
36637473 TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
1 TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
36637513 T
1 T
36637514 TTTAACCACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (40 bp):
TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
Found at i:36647030 original size:27 final size:27
Alignment explanation
Indices: 36646980--36647043 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
36646970 TGTGTTGACG
36646980 AGCTGGGGTTCGCCAGTCCTTTTGGCA
1 AGCTGGGGTTCGCCAGTCCTTTTGGCA
* * **
36647007 AGCTTGGGTTCGCTAGT-CTATTTGGTG
1 AGCTGGGGTTCGCCAGTCCT-TTTGGCA
36647034 AGCTGGGGTT
1 AGCTGGGGTT
36647044 TTCCATTCTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.11, C:0.19, G:0.36, T:0.34
Consensus pattern (27 bp):
AGCTGGGGTTCGCCAGTCCTTTTGGCA
Found at i:36650490 original size:27 final size:27
Alignment explanation
Indices: 36650442--36650493 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36650432 GACTACCCCG
36650442 TGTTTAACGTCCCATCAAACTATCTCA
1 TGTTTAACGTCCCATCAAACTATCTCA
* * *
36650469 TGTTTAATGTCCCATTAGACTATCT
1 TGTTTAACGTCCCATCAAACTATCT
36650494 TTGCTGTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (27 bp):
TGTTTAACGTCCCATCAAACTATCTCA
Found at i:36661598 original size:40 final size:40
Alignment explanation
Indices: 36661551--36661727 Score: 264
Period size: 40 Copynumber: 4.4 Consensus size: 40
36661541 GGCTCGGATG
36661551 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
* * * *
36661591 TATTAACCCGCACGAATGCCTTCGGGACTTAGCCCGATTA
1 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
** * *
36661631 TAATAACCCCCACGAATGCCTTCGGGACTTACCCCAGTTA
1 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
36661671 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
* *
36661711 CAATAACCTGCACGAAT
1 TAATAACCAGCACGAAT
36661728 ACTATGCACA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (40 bp):
TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
Found at i:36663639 original size:26 final size:26
Alignment explanation
Indices: 36663610--36663669 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
36663600 TCCCTTTGAA
* * *
36663610 TCATTCGATATTTTGCACACTAAATG
1 TCATTCAATATCTCGCACACTAAATG
*
36663636 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAATG
36663664 TCATTC
1 TCATTC
36663670 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAATG
Found at i:36668481 original size:28 final size:28
Alignment explanation
Indices: 36668447--36668572 Score: 153
Period size: 28 Copynumber: 4.5 Consensus size: 28
36668437 AACCGATCTT
* *
36668447 GCACACACAGTGCTTGGTTACGAAACTC
1 GCACACACAGTGCTCGATTACGAAACTC
* * * *
36668475 GCACACACAGTGCCTCAATAACCAATCTC
1 GCACACACAGTG-CTCGATTACGAAACTC
36668504 GCACACACAGTGCTCGATTACGAAACTC
1 GCACACACAGTGCTCGATTACGAAACTC
* * * *
36668532 GCACACACAGTGCTTGGTTACGGAACTT
1 GCACACACAGTGCTCGATTACGAAACTC
36668560 GCACACACAGTGC
1 GCACACACAGTGC
36668573 CTATGTTCAC
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 61 0.73
29 22 0.27
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (28 bp):
GCACACACAGTGCTCGATTACGAAACTC
Found at i:36668508 original size:57 final size:57
Alignment explanation
Indices: 36668437--36668544 Score: 180
Period size: 57 Copynumber: 1.9 Consensus size: 57
36668427 GTGCCCTAAC
* * * *
36668437 AACCGATCTTGCACACACAGTGCTTGGTTACGAAACTCGCACACACAGTGCCTCAAT
1 AACCAATCTCGCACACACAGTGCTCGATTACGAAACTCGCACACACAGTGCCTCAAT
36668494 AACCAATCTCGCACACACAGTGCTCGATTACGAAACTCGCACACACAGTGC
1 AACCAATCTCGCACACACAGTGCTCGATTACGAAACTCGCACACACAGTGC
36668545 TTGGTTACGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (57 bp):
AACCAATCTCGCACACACAGTGCTCGATTACGAAACTCGCACACACAGTGCCTCAAT
Found at i:36670562 original size:26 final size:26
Alignment explanation
Indices: 36670533--36670591 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
36670523 TCCCTTTGAA
* * *
36670533 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
36670559 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
36670587 -CATTC
1 TCATTC
36670592 TCAATATTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.07
26 4 0.14
27 3 0.11
28 19 0.68
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:36670598 original size:27 final size:28
Alignment explanation
Indices: 36670547--36670608 Score: 99
Period size: 27 Copynumber: 2.2 Consensus size: 28
36670537 TCGATATTTT
36670547 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
36670575 GCACACTAAGTG-CATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
36670602 GTACACT
1 GCACACT
36670609 GAGTACCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 20 0.62
28 12 0.38
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:36687451 original size:47 final size:45
Alignment explanation
Indices: 36687297--36687705 Score: 371
Period size: 46 Copynumber: 8.8 Consensus size: 45
36687287 GGGATATATT
* * * *
36687297 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAAGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCT--GTG
* * * *
36687346 TGCTGATGCATGTCCCAGACATGTCTTACACTAGC-A-CATCTCTTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCT-GTG
** * *
36687391 GCCGATGTGTGTCCCAAACACGTCTTACACTGGCTATC-TCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGT---G
*
36687438 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTTTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCTGTG
*
36687483 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTCTG
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCTGTG
* *
36687529 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CTGTG
* * ** *
36687578 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGTG
*
36687622 ATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCATAATGTG
1 --GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CTGTG
* *
36687672 GCCAAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
36687706 GCACAAATCA
Statistics
Matches: 301, Mismatches: 40, Indels: 40
0.79 0.10 0.10
Matches are distributed among these distances:
44 30 0.10
45 6 0.02
46 92 0.31
47 88 0.29
48 59 0.20
49 19 0.06
50 7 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGTG
Found at i:36687500 original size:46 final size:45
Alignment explanation
Indices: 36687296--36687705 Score: 355
Period size: 47 Copynumber: 8.8 Consensus size: 45
36687286 TGGGATATAT
* * * **
36687296 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAAGCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCT--TTG
* *
36687346 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCA-CATCTCTT-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCT-TTG
* ** * * *
36687390 AGCCGATGTGTGTCCCAAACACGTCTTACACTGGCTATC-TCTGTCG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCT-TTG
*
36687436 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTTTG
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTTTG
*
36687483 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTTTG
* *
36687529 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCAT-CTTTG
* * * * *
36687578 -GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTC-TGG
1 TGCCGATGCATGTCCCAGACATGTCTTACACT-GGCATCATCTTTG
**
36687622 ATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCAT-AATG
1 -TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCTTTG
* *
36687670 TGGCCAAAGCATGTCCCAGACATGTCTTACACTGGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGC
36687706 GCACAAATCA
Statistics
Matches: 300, Mismatches: 42, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
44 29 0.10
45 5 0.02
46 90 0.30
47 95 0.32
48 57 0.19
49 17 0.06
50 7 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTTTG
Found at i:36687595 original size:94 final size:89
Alignment explanation
Indices: 36687297--36687705 Score: 398
Period size: 94 Copynumber: 4.4 Consensus size: 89
36687287 GGGATATATT
* * *
36687297 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAAGC-GTGCTGATGCATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-CTCATCT---CTGTGCCGATGCATGTCC
* *
36687361 CAGACATGTCTTACACTAGCA-CATCTCTTA
60 CAGACATGTCTTACACTGGCATCATCT-TTG
** * *
36687391 GCCGATGTGTGTCCCAAACACGTCTTACACTGG-CT-ATCTCTGTCGAGGCCGATGCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCCTCATCTCTGT----GCCGATGCATGTCCCA
36687454 GACATGTCTTACACTGGCACTCATCTTTG
62 GACATGTCTTACACTGGCA-TCATCTTTG
36687483 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTGCCGATGCCATGTCCCAG
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC-CTCATCTCTGTGCCGATG-CATGTCCCAG
* *
36687548 ACATGGTCTTACACTGGCTATCATAGTATG
63 ACAT-GTCTTACACTGGC-ATCAT-CTTTG
* *
36687578 GCTGATGCATGTCCCAGACATGTCTTACACTAGCC-C-TCGTCTGGATGCCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCCTCATC-TCT-G-TGCCGATG-CATGTCCCA
* *
36687641 GACATAGTCTTACACTGGCTATCATAATGTG
62 GACAT-GTCTTACACTGGC-ATCAT-CTTTG
* *
36687672 GCCAAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
36687706 GCACAAATCA
Statistics
Matches: 275, Mismatches: 22, Indels: 36
0.83 0.07 0.11
Matches are distributed among these distances:
86 1 0.00
87 2 0.01
89 3 0.01
90 2 0.01
91 35 0.13
92 25 0.09
93 61 0.22
94 132 0.48
95 6 0.02
96 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (89 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCCTCATCTCTGTGCCGATGCATGTCCCAGACA
TGTCTTACACTGGCATCATCTTTG
Found at i:36688086 original size:30 final size:30
Alignment explanation
Indices: 36688045--36688102 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36688035 AAATTTACAT
* * *
36688045 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTTTACCCCTAGA
36688075 CTTTGGCAAAATAACCATTTTACCCCTA
1 CTTTGGCAAAATAACCATTTTACCCCTA
36688103 TGCCCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTAGA
Found at i:36690625 original size:378 final size:377
Alignment explanation
Indices: 36689892--36690589 Score: 869
Period size: 378 Copynumber: 1.8 Consensus size: 377
36689882 TGATAAGGTT
* *
36689892 TTGTAACAACTCATTTTTAGGTCAAATCAAAATAGTAATTTCGGGATCAAAAATTCAAAGTAGAA
1 TTGTAACAACTCATTTTTAGGTCAAATCAAAATAGTAATTTCGGGACCAAAAATCCAAAGTAGAA
** *
36689957 ATATTTGTTTTAATATTTATTTAAGGTCTACAACATGGTAGAATAATTGTGTAAAATTTCGTTTA
66 ATATTACTTTTAATATTTATTTAAGGTCTACAACATGGTAGAATAATTGTGTAAAATTTCGTTAA
* *
36690022 GAAATTTTATCGATTGAGTACGTAATTTGACTAGAAGGACTAAATTGCAATAGGTGCAAAATTTG
131 GAAATTTTATCGATAGAGTA-GTAATTTGACTAGAAGGACTAAATTGCAATAGGTGCAAAATATG
*
36690087 AGTTCTATAGGCTAAAAGTAGTAAATTGTTATGAAATTCTAAATTAGAGGTCCTTAAATGGTAAT
195 AGTTCTAAAGGCTAAAAGTAGTAAATTGTTATGAAATTCTAAATTAGAGGTCCTTAAATGGTAAT
*
36690152 TAGACCATTATACTTTAGAATGGACAAAAATGGACATGGAGTAGGTAAAATTTCAAAGTTTAAGT
260 TAGACCATTATACTTAAGAATGGACAAAAATGGACATGGAGTAGGTAAAATTTCAAAGTTTAAGT
* * *
36690217 GTGGGGTAAATAGGTAATTTGGTAAATAAAGCCAAAATAACTAAAATAAGATG
325 GTAGGGCAAATAGGTAATTTGGTAAATAAAGACAAAATAACTAAAATAAGATG
* * * ** * *
36690270 TTGTAACAAC-CTGTTTTTTGGTCAAATCCAAATAGTGGTTTTGGGACCACAAATCCAAAGTAGA
1 TTGTAACAACTC-ATTTTTAGGTCAAATCAAAATAGTAATTTCGGGACCAAAAATCCAAAGTAGA
* * ** *
36690334 AATGTTACTTTTATTA-TTACTTTAAGGTCTACAGTATGGTTA-AATACTTGTGTGAAAATTTCG
65 AATATTACTTTTAATATTTA-TTTAAGGTCTACAACATGG-TAGAATAATTGTGT-AAAATTTCG
* *
36690397 TTAAGAAATTTTATCGATAGGGT-GTCCAATTTGACTA-ATAGGACTAAATTGCAATAGGTGTAA
127 TTAAGAAATTTTATCGATAGAGTAGT--AATTTGACTAGA-AGGACTAAATTGCAATAGGTGCAA
* * * * * * *
36690460 AATATGTGTTCTAGAAGG-TAGAGGT-GTCTAATTGTTAT-AAATTTTTAAATTGGAGGTCCTTG
189 AATATGAGTTCTA-AAGGCTAAAAGTAGT-AAATTGTTATGAAA-TTCTAAATTAGAGGTCCTTA
* * * * *
36690522 AATGGTCATTA-ACCATTATACTCTAAG-TTGGACGAAAATGGACATGG-TTAGGTGAAATTTCA
251 AATGGTAATTAGACCATTATACT-TAAGAATGGACAAAAATGGACATGGAGTAGGTAAAATTTCA
36690584 AAGTTT
315 AAGTTT
36690590 GGCATTAAGG
Statistics
Matches: 274, Mismatches: 35, Indels: 23
0.83 0.11 0.07
Matches are distributed among these distances:
377 25 0.09
378 127 0.46
379 119 0.43
380 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (377 bp):
TTGTAACAACTCATTTTTAGGTCAAATCAAAATAGTAATTTCGGGACCAAAAATCCAAAGTAGAA
ATATTACTTTTAATATTTATTTAAGGTCTACAACATGGTAGAATAATTGTGTAAAATTTCGTTAA
GAAATTTTATCGATAGAGTAGTAATTTGACTAGAAGGACTAAATTGCAATAGGTGCAAAATATGA
GTTCTAAAGGCTAAAAGTAGTAAATTGTTATGAAATTCTAAATTAGAGGTCCTTAAATGGTAATT
AGACCATTATACTTAAGAATGGACAAAAATGGACATGGAGTAGGTAAAATTTCAAAGTTTAAGTG
TAGGGCAAATAGGTAATTTGGTAAATAAAGACAAAATAACTAAAATAAGATG
Found at i:36709542 original size:29 final size:30
Alignment explanation
Indices: 36709499--36709561 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
36709489 ATTAAGCTAG
* *
36709499 AACGGATTCATAAACA-TAAAAATATTAAA
1 AACGAATTCAAAAACATTAAAAATATTAAA
36709528 AACGAATTCAAAAACATTAAAAATATTAAA
1 AACGAATTCAAAAACATTAAAAATATTAAA
36709558 AACG
1 AACG
36709562 GGATCAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.22
Consensus pattern (30 bp):
AACGAATTCAAAAACATTAAAAATATTAAA
Found at i:36711096 original size:22 final size:22
Alignment explanation
Indices: 36711059--36711101 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
36711049 TACATTTGAT
36711059 AAATATTAGATTAAATTTAATATA
1 AAATATTA-ATTAAA-TTAATATA
36711083 AAATATT-ATTAAATTAATA
1 AAATATTAATTAAATTAATA
36711102 GAATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
24 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATTAATTAAATTAATATA
Found at i:36716711 original size:27 final size:27
Alignment explanation
Indices: 36716681--36716732 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
36716671 CGTCCTAGCA
*
36716681 GACTACCTCGTGTTTAACATCCCATTG
1 GACTACCCCGTGTTTAACATCCCATTG
36716708 GACTACCCCGTGTTTAACATCCCAT
1 GACTACCCCGTGTTTAACATCCCAT
36716733 CAAACTATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.31
Consensus pattern (27 bp):
GACTACCCCGTGTTTAACATCCCATTG
Found at i:36716739 original size:27 final size:27
Alignment explanation
Indices: 36716682--36716739 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
36716672 GTCCTAGCAG
* ***
36716682 ACTACCTCGTGTTTAACATCCCATTGG
1 ACTACCCCGTGTTTAACATCCCATCAA
36716709 ACTACCCCGTGTTTAACATCCCATCAA
1 ACTACCCCGTGTTTAACATCCCATCAA
36716736 ACTA
1 ACTA
36716740 TCCTATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (27 bp):
ACTACCCCGTGTTTAACATCCCATCAA
Found at i:36720391 original size:48 final size:48
Alignment explanation
Indices: 36720315--36720543 Score: 220
Period size: 48 Copynumber: 4.9 Consensus size: 48
36720305 ACACATGGTA
* * *
36720315 CGATGCCAATGCCATATCCC-GGATATGGTCTTACATTGGATCACATAT
1 CGATGCCAATGCCATGTCCCAGG-CATGGTCTTACATGGGATCACATAT
*** *
36720363 CGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATTGTAGAT
1 CGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATCACATAT
**
36720411 CGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAT
1 CGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATCACATAT
* * * ** *
36720459 CGATGCCGAT---A-G-CCCA-GCTACGGTCTTACACGAAATTACATAT
1 CGATGCCAATGCCATGTCCCAGGC-ATGGTCTTACATGGGATCACATAT
* * * *
36720502 AGATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 CGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATC
36720544 GCACATAACC
Statistics
Matches: 143, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 30 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 105 0.73
49 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
CGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATCACATAT
Found at i:36739802 original size:47 final size:47
Alignment explanation
Indices: 36739749--36740175 Score: 676
Period size: 47 Copynumber: 9.1 Consensus size: 47
36739739 TTTAGGATTT
36739749 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
*
36739796 AATGTGACGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* *
36739843 AATGTGATAAATGTGAACATGAACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * *
36739890 AATGTGACGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* *
36739937 AATGTGATGAATGTGAACATGCACATATGTGATAAGGTCGAATGGCA
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
36739984 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * *
36740031 AATGTGATAAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
36740078 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * * * * * *
36740125 AATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGT-GAACATGCACATATGTGATAAGGCCGAATGGCC
36740172 AATG
1 AATG
36740176 CGAAATGCGT
Statistics
Matches: 350, Mismatches: 29, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
47 347 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.24
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
Found at i:36740204 original size:46 final size:46
Alignment explanation
Indices: 36740149--36740239 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
36740139 GGAAGTGTAT
* *
36740149 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * *
36740195 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
36740240 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:36741785 original size:40 final size:40
Alignment explanation
Indices: 36741731--36742129 Score: 537
Period size: 40 Copynumber: 10.0 Consensus size: 40
36741721 TTGAGAATTA
36741731 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
36741771 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
** * * * *
36741811 TATATCCAAGCTAAGTCTCGAAAAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36741851 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36741891 TATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * *
36741931 TATATCCAGGCTAAGTCTCAAAGAGCATTCGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
36741971 TATATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36742011 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
36742051 TATTTCAGGGTTAAGTCCCGAACAGCATTCGTACTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
36742091 TATATCCGGGTTAAGTCTCGAAGAGCATTCATACTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
36742130 ATGTGTATTC
Statistics
Matches: 315, Mismatches: 44, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 315 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:36742343 original size:25 final size:25
Alignment explanation
Indices: 36742293--36742345 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
36742283 TGTGTAACAA
* *
36742293 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
36742318 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
36742343 CAA
1 CAA
36742346 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:36745900 original size:47 final size:47
Alignment explanation
Indices: 36745849--36746322 Score: 770
Period size: 47 Copynumber: 10.1 Consensus size: 47
36745839 TTTAGGATTT
36745849 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
*
36745896 AATGTGATGAATGTGAACATGCTCATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
*
36745943 AATGTGACGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* *
36745990 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCAAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * *
36746037 AATGTGACGAATGTGAACATGCAGATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
*
36746084 AATGTGATGAATGTAAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
36746131 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
36746178 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * *
36746225 AATGTGATAAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
* * * * * * *
36746272 AATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGT-GAACATGCACATATGTGATAAGGCCGAATGGCC
36746319 AATG
1 AATG
36746323 CGAAATGCGT
Statistics
Matches: 399, Mismatches: 27, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 396 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
Found at i:36746351 original size:46 final size:46
Alignment explanation
Indices: 36746296--36746386 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
36746286 GGAAGTGTAT
* *
36746296 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
36746342 ATATGTGGTAAATCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
36746387 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:36748541 original size:15 final size:15
Alignment explanation
Indices: 36748502--36748581 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
36748492 GTATCTTGGG
*
36748502 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
36748517 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
36748532 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
36748547 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
36748562 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36748576 TTTCTT
1 TTTCTT
36748582 GTAATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36748571 original size:30 final size:30
Alignment explanation
Indices: 36748493--36748580 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
36748483 CATAGTATCG
* * *
36748493 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
36748523 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
36748553 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
36748581 TGTAATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:36751003 original size:46 final size:45
Alignment explanation
Indices: 36750950--36751125 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
36750940 TATTTGGGCA
36750950 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
36750996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
36751043 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
36751089 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36751126 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:36751105 original size:93 final size:93
Alignment explanation
Indices: 36750946--36751118 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
36750936 AGGATATTTG
* *
36750946 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
36751011 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
36751039 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
36751104 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
36751119 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:36754070 original size:15 final size:15
Alignment explanation
Indices: 36754031--36754109 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
36754021 GTATCTTGGG
*
36754031 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
36754046 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
36754061 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
36754075 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
36754090 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36754104 TTTCTT
1 TTTCTT
36754110 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36754094 original size:29 final size:29
Alignment explanation
Indices: 36754022--36754108 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
36754012 CATAGTATCG
* * * *
36754022 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
36754052 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
36754081 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
36754109 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:36756530 original size:46 final size:46
Alignment explanation
Indices: 36756477--36756652 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
36756467 TATTTGGGCA
*
36756477 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*** * * * *
36756523 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
* * *
36756570 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTTTGGTTGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
36756616 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36756653 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 70 0.66
47 36 0.34
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:36756636 original size:93 final size:93
Alignment explanation
Indices: 36756477--36756645 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
36756467 TATTTGGGCA
* *
36756477 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
36756542 GTCCGAGTTCGAGAGATGTAACTAGGCG
66 GTCCGAGTTCGAGAGATGTAACTAGGCG
* * * *
36756570 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTTTGGTTGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
36756635 GTCCGAGTTCG
66 GTCCGAGTTCG
36756646 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGAGAGATGTAACTAGGCG
Found at i:36760905 original size:17 final size:18
Alignment explanation
Indices: 36760885--36760918 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36760875 AAGTGAATTG
*
36760885 AAATTGC-GAAGTTAAAT
1 AAATTGCAGAAATTAAAT
36760902 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
36760919 ATGAGGAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.06, G:0.15, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:36761680 original size:27 final size:26
Alignment explanation
Indices: 36761650--36761711 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
36761640 AGATAATTAA
36761650 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
36761677 AATAATTATCTTAACATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
36761704 AATAAAAT
1 AATAAAAT
36761712 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:36767618 original size:49 final size:49
Alignment explanation
Indices: 36767557--36767868 Score: 165
Period size: 49 Copynumber: 6.6 Consensus size: 49
36767547 ACATCAAAGT
* *
36767557 CGATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGC
* * * * *
36767606 CGATGCCGTGTCCCAGACAGGTATTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
* * * * * **
36767655 CAATACCATGTCCCAAACAGGTCTTACACTGA--CACACA-A-C-AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
* * * * * *
36767699 TGACGCCATGTCCTAGACAGGTCTTACACT-AGCT-TGTATATCTCGAG-GT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATCG-GTGC
* * * ** *
36767748 CGATG-CATGTCCCAGACATGTCTTACACT-AGCTCTC--GTCTCAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGTGC
* * *
36767794 CGATG-CATGTCCCAAACATGTCTTACACTGGCTCTCATAATAT-GGT--
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCAT-ATATCGGTGC
* *
36767840 CGATG-CATGTCCCAAACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
36767869 AACACAGATA
Statistics
Matches: 203, Mismatches: 45, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.00
44 25 0.12
45 1 0.00
46 71 0.35
47 3 0.01
48 29 0.14
49 73 0.36
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:36767771 original size:48 final size:46
Alignment explanation
Indices: 36767705--36767869 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 46
36767695 AAGCTGACGC
* * *
36767705 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTT-TATATCTC-AGGTCGATG
* * ** *
36767753 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTTATATCTC-AGGTCGATG
* * *
36767799 CATGTCCCAAACATGTCTTACACTGGCTCTCATA-AT-ATGGTCGATG
1 CATGTCCCAAACATGTCTTACACTAGCT-TTATATCTCA-GGTCGATG
36767845 CATGTCCCAAACATGTCTTACACTA
1 CATGTCCCAAACATGTCTTACACTA
36767870 ACACAGATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.70
47 2 0.02
48 26 0.27
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTTTATATCTCAGGTCGATG
Found at i:36767813 original size:46 final size:46
Alignment explanation
Indices: 36767745--36767869 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
36767735 TATATCTCGA
* * *
36767745 GGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAAT
1 GGTCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAT--AT
*
36767792 -GTCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATAT
1 GGTCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATAT
36767837 GGTCGATGCATGTCCCAAACATGTCTTACACTA
1 GGTCGATGCATGTCCCAAACATGTCTTACACTA
36767870 ACACAGATAT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
45 2 0.03
46 68 0.96
47 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GGTCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATAT
Found at i:36773291 original size:23 final size:23
Alignment explanation
Indices: 36773244--36773292 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
36773234 AAATATTTAT
*
36773244 AAATTTATTAAAAATATATATTA
1 AAATTTATTAAAAATATATAATA
36773267 AAATTTAGTTAAATAAT-T-TAATA
1 AAATTTA-TTAAA-AATATATAATA
36773290 AAA
1 AAA
36773293 AATAATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 14 0.61
24 6 0.26
25 3 0.13
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATTTATTAAAAATATATAATA
Found at i:36774542 original size:39 final size:39
Alignment explanation
Indices: 36774473--36774602 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
36774463 TATTATAGGT
** *
36774473 TATAATAAGATCTAGTATTTGTTGTAGATTCTTAGGGTAA
1 TATAATAAGATCTAG-CCTTGTTGCAGATTCTTAGGGTAA
* * *
36774513 TACAATAAGATCTAGCCTTGTTGCAGATTCTCAGGGGAAA
1 TATAATAAGATCTAGCCTTGTTGCAGATTCTTA-GGGTAA
* * *
36774553 TATAATGAGATTTAGCCTTGTTGCAGGTTCTTA-GGTAA
1 TATAATAAGATCTAGCCTTGTTGCAGATTCTTAGGGTAA
36774591 TATAATAAGATC
1 TATAATAAGATC
36774603 CAACCCTTGT
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
38 14 0.19
39 14 0.19
40 47 0.63
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (39 bp):
TATAATAAGATCTAGCCTTGTTGCAGATTCTTAGGGTAA
Found at i:36777681 original size:13 final size:13
Alignment explanation
Indices: 36777659--36777698 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
36777649 AATCACGTCA
36777659 CACGGCCGTGTCC
1 CACGGCCGTGTCC
*
36777672 CACGGTCGTGTCC
1 CACGGCCGTGTCC
*
36777685 CACGGGCGTGTCC
1 CACGGCCGTGTCC
36777698 C
1 C
36777699 TGCCGAGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.07, C:0.42, G:0.33, T:0.17
Consensus pattern (13 bp):
CACGGCCGTGTCC
Found at i:36785622 original size:37 final size:34
Alignment explanation
Indices: 36785572--36785643 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
36785562 AAGTGTGCCG
*
36785572 TTTTTCTAACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTAACCATC-TACCTCCTCCT-C-TTCTTTTC
** *
36785609 TTTTTCTTTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTAACCATCTACCTCCTCCTCTTCTTTTC
36785643 T
1 T
36785644 CCATAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.07, C:0.36, G:0.00, T:0.57
Consensus pattern (34 bp):
TTTTTCTAACCATCTACCTCCTCCTCTTCTTTTC
Found at i:36790416 original size:29 final size:29
Alignment explanation
Indices: 36790383--36790456 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36790373 GTTGTGAGAT
* *
36790383 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
36790412 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
36790441 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36790457 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:36799358 original size:29 final size:29
Alignment explanation
Indices: 36799325--36799398 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36799315 GTTGTGAGAT
* *
36799325 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
36799354 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
36799383 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36799399 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:36812827 original size:17 final size:17
Alignment explanation
Indices: 36812805--36812841 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
36812795 CCCACTCATG
36812805 CCATGAAAAACCTACCT
1 CCATGAAAAACCTACCT
*
36812822 CCATGAAAAATCTACCT
1 CCATGAAAAACCTACCT
36812839 CCA
1 CCA
36812842 CGATTAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.35, G:0.05, T:0.19
Consensus pattern (17 bp):
CCATGAAAAACCTACCT
Found at i:36818576 original size:24 final size:23
Alignment explanation
Indices: 36818531--36818576 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
36818521 TAATATAAAA
**
36818531 AAATTATATTAAGAATTGTTATT
1 AAATTATATTAAGAATAATTATT
*
36818554 AAATTATATTTAATAATAATTAT
1 AAATTATA-TTAAGAATAATTAT
36818577 ATTAAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
AAATTATATTAAGAATAATTATT
Found at i:36818820 original size:16 final size:16
Alignment explanation
Indices: 36818799--36818849 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
36818789 TGAATTACTT
*
36818799 ATTACAGCCCTAATCC
1 ATTACAGCCCTATTCC
*
36818815 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCC
36818831 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCC
36818847 ATT
1 ATT
36818850 CCAGTGAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.27, C:0.33, G:0.06, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:36823335 original size:277 final size:277
Alignment explanation
Indices: 36822841--36823394 Score: 1081
Period size: 277 Copynumber: 2.0 Consensus size: 277
36822831 AAACTAATCT
36822841 ATGATCTAGCTAATAAGGAGTAAATTGTAAAATGGGCAAAATTACGAAATTGACAATTAATTAAC
1 ATGATCTAGCTAATAAGGAGTAAATTGTAAAATGGGCAAAATTACGAAATTGACAATTAATTAAC
*
36822906 AAGCAGTGGTCAATTGATCTTGGTTTGGTTTACCAATCTTCAAATTAGGGATCCAAACCACTTAA
66 AAACAGTGGTCAATTGATCTTGGTTTGGTTTACCAATCTTCAAATTAGGGATCCAAACCACTTAA
36822971 ACTCCAAAAATGGCTCCATTTTACCACTCGATCTCAATTTTTTCAAGTTAGACAATTTTACAGGT
131 ACTCCAAAAATGGCTCCATTTTACCACTCGATCTCAATTTTTTCAAGTTAGACAATTTTACAGGT
36823036 TAACTTAGGACTAATGCATTGGTGCCCAACAAGATCACTTCTTGGTCTCACTTGTCTAGATGTTC
196 TAACTTAGGACTAATGCATTGGTGCCCAACAAGATCACTTCTTGGTCTCACTTGTCTAGATGTTC
36823101 CCTTAGAGTTGCTAGTC
261 CCTTAGAGTTGCTAGTC
36823118 ATGATCTAGCTAATAAGGAGTAAATTGTAAAATGGGCAAAATTACGAAATTGACAATTAATTAAC
1 ATGATCTAGCTAATAAGGAGTAAATTGTAAAATGGGCAAAATTACGAAATTGACAATTAATTAAC
36823183 AAACAGTGGTCAATTGATCTTGGTTTGGTTTACCAATCTTCAAATTAGGGATCCAAACCACTTAA
66 AAACAGTGGTCAATTGATCTTGGTTTGGTTTACCAATCTTCAAATTAGGGATCCAAACCACTTAA
*
36823248 ACTCCAAAAATGGCTCCATTTTACCTCTCGATCTCAATTTTTTCAAGTTAGACAATTTTACAGGT
131 ACTCCAAAAATGGCTCCATTTTACCACTCGATCTCAATTTTTTCAAGTTAGACAATTTTACAGGT
*
36823313 TAACTTAGGACTAATGCATTGGTGCCCAACAAGATCAGTTCTTGGTCTCACTTGTCTAGATGTTC
196 TAACTTAGGACTAATGCATTGGTGCCCAACAAGATCACTTCTTGGTCTCACTTGTCTAGATGTTC
36823378 CCTTAGAGTTGCTAGTC
261 CCTTAGAGTTGCTAGTC
36823395 CTAAGTTTTT
Statistics
Matches: 274, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
277 274 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (277 bp):
ATGATCTAGCTAATAAGGAGTAAATTGTAAAATGGGCAAAATTACGAAATTGACAATTAATTAAC
AAACAGTGGTCAATTGATCTTGGTTTGGTTTACCAATCTTCAAATTAGGGATCCAAACCACTTAA
ACTCCAAAAATGGCTCCATTTTACCACTCGATCTCAATTTTTTCAAGTTAGACAATTTTACAGGT
TAACTTAGGACTAATGCATTGGTGCCCAACAAGATCACTTCTTGGTCTCACTTGTCTAGATGTTC
CCTTAGAGTTGCTAGTC
Found at i:36826493 original size:42 final size:42
Alignment explanation
Indices: 36826430--36826566 Score: 175
Period size: 42 Copynumber: 3.2 Consensus size: 42
36826420 TAAGTCTATG
* * *
36826430 TGTAAGATCATATCTGCGATATGGTATCAATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGTATCAATATGAGATTTCA
* **
36826472 TGTAAGACCATATCTGGGATATGGAATTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGTATCAATATGAGATTTCA
* * * *
36826514 TGTAAGACCATAGCTGGGCTATTGGTATCAATACGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGTATCAATATGAGATTTCA
36826557 TGTAAGACCA
1 TGTAAGACCA
36826567 AATGTAATAG
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 55 0.68
43 26 0.32
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGTATCAATATGAGATTTCA
Found at i:36827813 original size:43 final size:42
Alignment explanation
Indices: 36827714--36827835 Score: 172
Period size: 43 Copynumber: 2.9 Consensus size: 42
36827704 CTGGGTTAGT
*
36827714 TGAGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
36827756 TGAGATTTTGTGTAAGACCATAGCTGGGTTATTGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
36827799 TGAGATCTCATGTAAGACTATATCTGGGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
36827836 TGGTATGGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:36829703 original size:46 final size:46
Alignment explanation
Indices: 36829650--36829823 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
36829640 TGTTTGGGCA
* *
36829650 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTAAACG
* * * *
36829696 TCCGAACTCGTTGAGTTGAGTCCAAGTT--C-GAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTAA--A--CG
* * * *
36829743 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTAAACG
* * * *
36829789 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
36829824 GGGCAGGTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 8 0.08
44 1 0.01
45 1 0.01
46 59 0.57
47 26 0.25
48 1 0.01
49 1 0.01
50 7 0.07
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTAAACG
Found at i:36832803 original size:15 final size:15
Alignment explanation
Indices: 36832764--36832813 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
36832754 GTATCTTGGG
*
36832764 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
* *
36832779 TCTCTTTATTGTGGA
1 TTTCTTTATTCTGGA
*
36832794 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36832808 TTTCTT
1 TTTCTT
36832814 GTTATCTTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
14 8 0.28
15 21 0.72
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36840487 original size:19 final size:19
Alignment explanation
Indices: 36840452--36840532 Score: 135
Period size: 19 Copynumber: 4.2 Consensus size: 19
36840442 AGATTACAAG
*
36840452 ATCATATCTTCAAGATTGTAT
1 ATCATATC-T-AAGATTGCAT
36840473 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36840492 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36840511 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36840530 ATC
1 ATC
36840533 CTTAAAGATT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
19 50 0.85
20 1 0.02
21 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:36841284 original size:89 final size:87
Alignment explanation
Indices: 36841080--36841284 Score: 234
Period size: 87 Copynumber: 2.3 Consensus size: 87
36841070 GCACAGGAAT
* * * **
36841080 GTCAGATTTGCTATGTATTCAATATGTTCCCTGTAAACACTGGGATGCCAAATCATCTTGGATCT
1 GTCAGATTTGCTATGTCTTCGATATGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
36841145 CCTTCAGCATAAACACCTGAAG
66 CCTTCAGCATAAACACCTGAAG
* * *
36841167 GTCAGATTTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCTAAATCATCTTGGATCT
1 GTCAGATTTGCTATGTCTTCGATATGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
** * *
36841232 GTTTCAATGTGA-AAATATCC-GAAG
66 CCTTC-A-G-CATAAACA-CCTGAAG
* *
36841256 GTCAGATCTGCTATGTCTTCGATCTGCTC
1 GTCAGATTTGCTATGTCTTCGATATGCTC
36841285 TCCGTCGAAT
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
87 60 0.60
88 1 0.01
89 36 0.36
90 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (87 bp):
GTCAGATTTGCTATGTCTTCGATATGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
CCTTCAGCATAAACACCTGAAG
Found at i:36841500 original size:84 final size:84
Alignment explanation
Indices: 36841403--36842108 Score: 1086
Period size: 84 Copynumber: 8.4 Consensus size: 84
36841393 TCTGCTATAC
* * **
36841403 TTTAACCCGTTACCCTACTGCTTAGGGGGTTAAGGCGTA-TCTTCGATCTATTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
*
36841467 AGGGAGATAAGATCTGTAAA
65 AGGGAGATAAGATCTGCAAA
* * * *
36841487 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTGCTTCGCTACTGT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
36841552 TTAGGGAGATAAGATCTGC---
63 TTAGGGAGATAAGATCTGCAAA
*
36841571 --GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
36841634 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * * *
36841653 TTTAACCTATTACCCTA-TCGGTTA-GGGATTAAGGCGGGTCTTCGATCTGCTCCCCTACTGCTT
1 TTTAACCTGTTACCCTACT-GCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTT
36841716 AGGGAGATAAGATCTGCAAA
65 AGGGAGATAAGATCTGCAAA
*
36841736 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
36841801 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* *
36841820 TTTAACCTGTTACCCTACCGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
36841885 GGGAGATAAGATCTACAAA
66 GGGAGATAAGATCTGCAAA
*
36841904 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
* *
36841969 GGGAGATAATATCTGTAAA
66 GGGAGATAAGATCTGCAAA
* *
36841988 TTTAACCTGTTATCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
36842053 GGGAGATAAGATGTGCAAA
66 GGGAGATAAGATCTGCAAA
*
36842072 TTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
36842109 CTGAATTTTG
Statistics
Matches: 568, Mismatches: 42, Indels: 24
0.90 0.07 0.04
Matches are distributed among these distances:
79 35 0.06
81 1 0.00
82 38 0.07
83 79 0.14
84 382 0.67
85 1 0.00
87 32 0.06
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Found at i:36848700 original size:32 final size:32
Alignment explanation
Indices: 36848664--36848769 Score: 94
Period size: 32 Copynumber: 3.4 Consensus size: 32
36848654 ATCAACGGTT
36848664 AAGATTAAAAGATATCTACAAATTAAATCTCC
1 AAGATTAAAAGATATCTACAAATTAAATCTCC
* * * **** *
36848696 AAGATTACAAG--ATCATA-ACATCAGCGGT-T
1 AAGATTAAAAGATATC-TACAAATTAAATCTCC
36848725 AAGATTAAAAGATATCTACAAATTAAATCTCC
1 AAGATTAAAAGATATCTACAAATTAAATCTCC
*
36848757 AAGATTACAAGAT
1 AAGATTAAAAGAT
36848770 CATATCTTCA
Statistics
Matches: 52, Mismatches: 17, Indels: 10
0.66 0.22 0.13
Matches are distributed among these distances:
29 10 0.19
30 10 0.19
31 10 0.19
32 22 0.42
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.26
Consensus pattern (32 bp):
AAGATTAAAAGATATCTACAAATTAAATCTCC
Found at i:36848717 original size:61 final size:61
Alignment explanation
Indices: 36848643--36848773 Score: 235
Period size: 61 Copynumber: 2.1 Consensus size: 61
36848633 CCAACGGTAT
*
36848643 AGATCAATTACATCAACGGTTAAGATTAAAAGATATCTACAAATTAAATCTCCAAGATTACA
1 AGATC-ATAACATCAACGGTTAAGATTAAAAGATATCTACAAATTAAATCTCCAAGATTACA
*
36848705 AGATCATAACATCAGCGGTTAAGATTAAAAGATATCTACAAATTAAATCTCCAAGATTACA
1 AGATCATAACATCAACGGTTAAGATTAAAAGATATCTACAAATTAAATCTCCAAGATTACA
36848766 AGATCATA
1 AGATCATA
36848774 TCTTCAAGAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 62 0.93
62 5 0.07
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (61 bp):
AGATCATAACATCAACGGTTAAGATTAAAAGATATCTACAAATTAAATCTCCAAGATTACA
Found at i:36848803 original size:19 final size:19
Alignment explanation
Indices: 36848768--36848865 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
36848758 AGATTACAAG
36848768 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
36848789 ATCATATATAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36848808 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
36848825 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36848844 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
36848863 ATC
1 ATC
36848866 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
20 1 0.01
21 7 0.10
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:36848837 original size:36 final size:37
Alignment explanation
Indices: 36848768--36848865 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
36848758 AGATTACAAG
36848768 ATCATATCTTCAAGATTGCATATCATATATAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATATAAGATTGCAT
*
36848808 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATATAAGATTGCAT
36848844 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
36848866 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATATAAGATTGCAT
Found at i:36857699 original size:55 final size:54
Alignment explanation
Indices: 36857591--36857834 Score: 236
Period size: 55 Copynumber: 4.6 Consensus size: 54
36857581 ATTAGGGTTT
* * *
36857591 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACATTGGTAA-GTTCTATAAGGC
* *
36857646 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTT-CTATAAGGC
* * *
36857701 ATAGG-T-CCTATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 A-AGGATACC-ATGTAAGACCATGCCAAGACATGACATTGGTAAGTTCTATAAGGC
* * * * *
36857754 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTCTATAAGGC
* * *
36857803 AAGGATACCACGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
36857835 GCAATGTTAA
Statistics
Matches: 162, Mismatches: 20, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
49 28 0.17
52 5 0.03
53 43 0.27
54 14 0.09
55 69 0.43
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTCTATAAGGC
Found at i:36857797 original size:108 final size:110
Alignment explanation
Indices: 36857600--36857798 Score: 314
Period size: 108 Copynumber: 1.8 Consensus size: 110
36857590 TAAGGATACC
36857600 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
36857665 ATGTCAAGACATGACATTGATAAGTTACTATAAGGCATAGGTCCT
66 ATGTCAAGACATGACAATGATAAGTTACTATAAGGCATAGGTCCT
* *
36857710 ATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGAC
* * *
36857772 CATGTCGAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGACAATGATAAGTT
36857799 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGACAATGATAAGTTACTATAAGGCATAGGTCCT
Found at i:36858058 original size:16 final size:16
Alignment explanation
Indices: 36858037--36858067 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36858027 ATAAATTTGA
36858037 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
36858053 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
36858068 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:36860661 original size:15 final size:16
Alignment explanation
Indices: 36860634--36860663 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36860624 AAATCAAGCC
36860634 ATAAAATTTCATTCAA
1 ATAAAATTTCATTCAA
36860650 ATAAAA-TTCATTCA
1 ATAAAATTTCATTCA
36860664 TACATATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (16 bp):
ATAAAATTTCATTCAA
Found at i:36867996 original size:25 final size:25
Alignment explanation
Indices: 36867962--36868026 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
36867952 AAGGTCACAC
* *
36867962 GGCTATGTCACACACCCTTGTGCTA
1 GGCTGTGTCACACACCCATGTGCTA
* *
36867987 GGCTGTGTCACACGCCCATGTGTTA
1 GGCTGTGTCACACACCCATGTGCTA
*
36868012 GGCTGTGTAACACAC
1 GGCTGTGTCACACAC
36868027 TGACTTTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.26
Consensus pattern (25 bp):
GGCTGTGTCACACACCCATGTGCTA
Found at i:36870624 original size:14 final size:14
Alignment explanation
Indices: 36870595--36870623 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36870585 GTATTTAAAA
36870595 TTGGTTTTGAACTT
1 TTGGTTTTGAACTT
36870609 TTGGTTTTGAA-TT
1 TTGGTTTTGAACTT
36870622 TT
1 TT
36870624 TTTTCAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.14, C:0.03, G:0.21, T:0.62
Consensus pattern (14 bp):
TTGGTTTTGAACTT
Found at i:36876768 original size:42 final size:42
Alignment explanation
Indices: 36876721--36876812 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
36876711 TGGCCCTTAG
* * *
36876721 GCCCATTTCAATATCACATGTAATG-TCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATG-AAAGACCAATGAATGTATGCAA
36876763 GCCCATTTCAATATCACATGAAAGACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAAGACCAATGAATGTATGCAA
36876805 GCCCATTT
1 GCCCATTT
36876813 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 3 0.07
42 43 0.93
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAAGACCAATGAATGTATGCAA
Found at i:36876979 original size:24 final size:25
Alignment explanation
Indices: 36876952--36877018 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
36876942 GCCTAGCCTC
36876952 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
36876976 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* *
36877001 TTTCAGTAAACTGGGGCA
1 TTTTAATAAACTGGGGCA
36877019 TAGCTCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
24 6 0.16
25 32 0.84
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:36877868 original size:27 final size:27
Alignment explanation
Indices: 36877838--36877902 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36877828 GGGCATATTC
36877838 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
36877865 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
36877892 GTCTTTTTACC
1 GTCATTTTACC
36877903 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:36877994 original size:27 final size:26
Alignment explanation
Indices: 36877961--36878081 Score: 98
Period size: 27 Copynumber: 4.4 Consensus size: 26
36877951 TCTACAAACC
36877961 AAGGGTATTTTAGTAATTTTGTAAATT
1 AAGGGTATTTTA-TAATTTTGTAAATT
* * * *
36877988 AATGGTATTCCTATAATTTTTTAAAAAGTC
1 AAGGGTATT-TTATAATTTTGT--AAA-TT
36878018 AAGGGTATTTCTATAATTTTGTAAATT
1 AAGGGTATTT-TATAATTTTGTAAATT
* * **
36878045 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTT-ATAATTTTGTAAATT
*
36878072 GAGGGTATTT
1 AAGGGTATTT
36878082 CGGTAATTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.01
27 46 0.62
28 5 0.07
29 3 0.04
30 19 0.26
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.45
Consensus pattern (26 bp):
AAGGGTATTTTATAATTTTGTAAATT
Found at i:36878086 original size:27 final size:26
Alignment explanation
Indices: 36878019--36878090 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
36878009 TAAAAAGTCA
** **
36878019 AGGGTATTTCTATAATTTTGTAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
*
36878045 AGGGGTATTTTGGTAATTTTACAAATT
1 A-GGGTATTTCGGTAATTTTACAAATT
36878072 GAGGGTATTTCGGTAATTT
1 -AGGGTATTTCGGTAATTT
36878091 CTAAAACCAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:36878182 original size:27 final size:27
Alignment explanation
Indices: 36878148--36878239 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
36878138 GTAATTTCAC
36878148 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
36878175 AA-CTGAGGGTAAAATGGTAATTTTTTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * * *
36878202 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
36878229 AATCGAGGGTA
1 AATCGAGGGTA
36878240 CTTTGTTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:36878250 original size:54 final size:54
Alignment explanation
Indices: 36878138--36878266 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 54
36878128 GGATATTTCA
* * * *
36878138 GTAATTTCAC-AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
** * ***
36878191 GTAATTTTTTAAATCGAGGGTAAAATGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATG
* *
36878245 TTAATTTTACAAGTCGAGGGTA
1 GTAATTTTACAAATCGAGGGTA
36878267 TTTCAGTAAT
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
53 8 0.13
54 52 0.87
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:36881989 original size:21 final size:21
Alignment explanation
Indices: 36881959--36882020 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
36881949 TCTGCTGCCA
* * *
36881959 TCGCTATTGCCTCTACCTCCT
1 TCGCTGTTGCCGCTGCCTCCT
*
36881980 TTGCTGTTGCCGCTGCCTCCT
1 TCGCTGTTGCCGCTGCCTCCT
*
36882001 TCGCTGCTGCCGCTGCCTCC
1 TCGCTGTTGCCGCTGCCTCC
36882021 CTCTCTGCTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.03, C:0.44, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCTGTTGCCGCTGCCTCCT
Found at i:36882030 original size:24 final size:22
Alignment explanation
Indices: 36881974--36882032 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
36881964 ATTGCCTCTA
*
36881974 CCTCCTT-TGCTGTTGCCGCTG
1 CCTCCTTCTGCTGCTGCCGCTG
36881995 CCTCCTTC-GCTGCTGCCGCTG
1 CCTCCTTCTGCTGCTGCCGCTG
*
36882016 CCTCCCTCT-CTGCTGCC
1 CCTCCTTCTGCTGCTGCC
36882033 TCCGCTCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.00, C:0.47, G:0.20, T:0.32
Consensus pattern (22 bp):
CCTCCTTCTGCTGCTGCCGCTG
Found at i:36882471 original size:13 final size:14
Alignment explanation
Indices: 36882444--36882472 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36882434 ACTAATGACG
36882444 AATTAAACAATTAT
1 AATTAAACAATTAT
36882458 AATTAAAC-ATTAT
1 AATTAAACAATTAT
36882471 AA
1 AA
36882473 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:36884911 original size:12 final size:12
Alignment explanation
Indices: 36884896--36884921 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36884886 ATCATCCTCT
36884896 TCATCAGATTCA
1 TCATCAGATTCA
36884908 TCATCAGATTCA
1 TCATCAGATTCA
36884920 TC
1 TC
36884922 TTTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:36886653 original size:9 final size:9
Alignment explanation
Indices: 36886639--36886705 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
36886629 TAAGTATAAT
36886639 TAAGTTATG
1 TAAGTTATG
36886648 TAAGTTATG
1 TAAGTTATG
* ** *
36886657 ATATGAAATA
1 -TAAGTTATG
*
36886667 T-ATTTATG
1 TAAGTTATG
36886675 T-A-TTATG
1 TAAGTTATG
36886682 TAAGTTATG
1 TAAGTTATG
*
36886691 TAAATTATG
1 TAAGTTATG
36886700 TAAGTT
1 TAAGTT
36886706 GTTTATCATA
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
7 6 0.14
8 5 0.11
9 28 0.64
10 5 0.11
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36887152 original size:14 final size:14
Alignment explanation
Indices: 36887133--36887169 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
36887123 TAAAATAAAA
36887133 TAAAATAAAATATT
1 TAAAATAAAATATT
*
36887147 TAAAATAAAA-CTT
1 TAAAATAAAATATT
36887160 T-AAATAAAAT
1 TAAAATAAAAT
36887170 TTAATTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 8 0.38
13 3 0.14
14 10 0.48
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAAATAAAATATT
Found at i:36887470 original size:13 final size:14
Alignment explanation
Indices: 36887424--36887463 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
36887414 TTGTTCGTGA
*
36887424 TTAAAATAAAATTAA
1 TTAAAATAAAA-TAT
*
36887439 ATAAAATAAAATAT
1 TTAAAATAAAATAT
36887453 TTAAAATAAAA
1 TTAAAATAAAA
36887464 CTTTAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:36887613 original size:105 final size:100
Alignment explanation
Indices: 36886951--36887611 Score: 977
Period size: 99 Copynumber: 6.4 Consensus size: 100
36886941 CAATATTTAA
* *
36886951 AAATACAATTTAATTTAATTACGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
*
36887016 ATTAAAATAAAATAAAATAAAACATTTAAAGTAAAACTTT
66 ATTAAAATAAAATAAAAT-----ATTTAAAATAAAACTTT
*
36887056 AAAAACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
36887121 ATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
66 A-T----TAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
36887161 AAATAAAATTTAATTTAATTAGGTAATTT-AAAATAAAATAAAAGTAGATAAAATATTTTTCATG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
36887225 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
36887260 AAATGCAATTTAATTTAATTAGGTAATTT-AAAATAAAATAAAAGTAGACAAAATATTGTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
36887324 ATTAAAATAAAAT-AAATATTTAAAATAAAACTTT
66 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * * *
36887358 AAATACAATTTTATTTAATTAGTTAATTTAAAAATAAAATAAAAGTAGACAAAATATTGTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
36887423 ATTAAAATAAAATTAAATAAAATAAAATATTTAAAATAAAACTTT
66 A-T----T---A--AAATAAAATAAAATATTTAAAATAAAACTTT
* *
36887468 AAATATAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAAAAAATATTTTTCATG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
36887533 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
*
36887568 AAATACAATTTAATTTAATTAGTTAATTTAAAAATAAAATAAAA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
36887612 TATTTAAAAT
Statistics
Matches: 516, Mismatches: 23, Indels: 39
0.89 0.04 0.07
Matches are distributed among these distances:
98 47 0.09
99 141 0.27
100 74 0.14
102 1 0.00
103 1 0.00
104 36 0.07
105 107 0.21
106 1 0.00
107 1 0.00
109 10 0.02
110 97 0.19
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (100 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATG
ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:36890055 original size:20 final size:20
Alignment explanation
Indices: 36890027--36890065 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
36890017 ATGGGGTTGG
*
36890027 ATGATATAACAAGAAAACTA
1 ATGACATAACAAGAAAACTA
36890047 ATGACATAACAAGAAAACT
1 ATGACATAACAAGAAAACT
36890066 GAATCTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.13, G:0.10, T:0.18
Consensus pattern (20 bp):
ATGACATAACAAGAAAACTA
Found at i:36890601 original size:13 final size:14
Alignment explanation
Indices: 36890578--36890614 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
36890568 TATTATCTTT
36890578 TAAATAATTTAATC
1 TAAATAATTTAATC
36890592 TAAA-AATTTAATC
1 TAAATAATTTAATC
36890605 TAAATAATTT
1 TAAATAATTT
36890615 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:36890762 original size:7 final size:7
Alignment explanation
Indices: 36890752--36890799 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
36890742 CCTCTAATCT
36890752 CTAAACC
1 CTAAACC
36890759 CTAAAACC
1 CT-AAACC
36890767 CTAAACC
1 CTAAACC
*
36890774 CTACA-C
1 CTAAACC
*
36890780 ATAAACC
1 CTAAACC
*
36890787 TTAAACC
1 CTAAACC
36890794 CTAAAC
1 CTAAAC
36890800 TATAATGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
6 4 0.12
7 23 0.68
8 7 0.21
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:36891555 original size:41 final size:40
Alignment explanation
Indices: 36891510--36891614 Score: 131
Period size: 39 Copynumber: 2.6 Consensus size: 40
36891500 ACCTATAGTG
*
36891510 GCATTTTTTTTGAAAACGCCGCTAATTCTCGATCTTTAGCA
1 GCATTTTTTTT-AAAACGCCGCTAATGCTCGATCTTTAGCA
* **
36891551 GCA-TTTTTTAAAAACGCCGCTAATGCTCGATCTTTAGTG
1 GCATTTTTTTTAAAACGCCGCTAATGCTCGATCTTTAGCA
**
36891590 GTGTTTTTCTTTAAAACGCCGCTAA
1 GCATTTTT-TTTAAAACGCCGCTAA
36891615 AAACCTATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 27 0.49
40 10 0.18
41 18 0.33
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (40 bp):
GCATTTTTTTTAAAACGCCGCTAATGCTCGATCTTTAGCA
Found at i:36898577 original size:39 final size:39
Alignment explanation
Indices: 36898523--36898609 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
36898513 CCGGTAATTA
* *
36898523 GCCTGCTCGGTATAAACCTGAACTTATCACTGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
* *
36898562 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCAGGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
36898601 GCCTGCTAG
1 GCCTGCTAG
36898610 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:36901373 original size:18 final size:17
Alignment explanation
Indices: 36901343--36901385 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
36901333 TTGGCCATAC
36901343 GGGCCCAAATGGGCTAAAT
1 GGGCCC-AATGGGCT-AAT
*
36901362 GGGCCCAATGGGCTATT
1 GGGCCCAATGGGCTAAT
36901379 GGGCCCA
1 GGGCCCA
36901386 TAATAGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 8 0.35
19 6 0.26
ACGTcount: A:0.23, C:0.26, G:0.35, T:0.16
Consensus pattern (17 bp):
GGGCCCAATGGGCTAAT
Found at i:36901491 original size:29 final size:29
Alignment explanation
Indices: 36901449--36901528 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
36901439 ATGAATATGA
* *
36901449 ATGTGA-TTGGGCCTAACGGGCCTTATAC
1 ATGTGATTTGGGCCTAATGGGCCGTATAC
*
36901477 ATGTGATTTGGGCCTAATGGACCGTATAC
1 ATGTGATTTGGGCCTAATGGGCCGTATAC
*
36901506 AGGTGATTTGGGCCTAATGGGCC
1 ATGTGATTTGGGCCTAATGGGCC
36901529 ATATGAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 6 0.13
29 40 0.87
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (29 bp):
ATGTGATTTGGGCCTAATGGGCCGTATAC
Found at i:36901541 original size:29 final size:28
Alignment explanation
Indices: 36901449--36901563 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
36901439 ATGAATATGA
* *
36901449 ATGTGATTGGGCCTAACGGGCCTTATAC
1 ATGTGATTGGGCCTAATGGGCCATATAC
* *
36901477 ATGTGATTTGGGCCTAATGGACCGTATAC
1 ATGTGA-TTGGGCCTAATGGGCCATATAC
*
36901506 AGGTGATTTGGGCCTAATGGGCCATATGA-
1 ATGTGA-TTGGGCCTAATGGGCCATAT-AC
* * * *
36901535 ATATGATTGGACTTAATGGGCCAGATAC
1 ATGTGATTGGGCCTAATGGGCCATATAC
36901563 A
1 A
36901564 GGTATGTGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.01
28 24 0.33
29 47 0.64
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (28 bp):
ATGTGATTGGGCCTAATGGGCCATATAC
Found at i:36901564 original size:57 final size:57
Alignment explanation
Indices: 36901451--36901566 Score: 130
Period size: 57 Copynumber: 2.0 Consensus size: 57
36901441 GAATATGAAT
* * *
36901451 GTGATTGGGCCTAACGGGCCTTATACATGTGATTTGGGCCTAATGGACCGTATACAG
1 GTGATTGGGCCTAACGGGCCATATACATATGATTTGGACCTAATGGACCGTATACAG
* * *
36901508 GTGATTTGGGCCTAATGGGCCATATGA-ATATGA-TTGGACTTAATGGGCCAG-ATACAG
1 GTGA-TTGGGCCTAACGGGCCATAT-ACATATGATTTGGACCTAATGGACC-GTATACAG
36901565 GT
1 GT
36901567 ATGTGAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
57 25 0.50
58 24 0.48
59 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATACATATGATTTGGACCTAATGGACCGTATACAG
Found at i:36913003 original size:40 final size:40
Alignment explanation
Indices: 36912877--36913003 Score: 107
Period size: 41 Copynumber: 3.1 Consensus size: 40
36912867 ATGCTAAAGC
* * * *
36912877 ATAGCTAAAGCTATTATAAACTCGTACACTAAGTGC-CTTT
1 ATAGCCAAAGCTA-TCTCAACTCGTACACTAAGTGCTCTAT
* * * *
36912917 CATAGCCAAAGCTATCTCAACCTTGCACACTAAGT-TTCATAA
1 -ATAGCCAAAGCTATCTCAA-CTCGTACACTAAGTGCTC-TAT
*
36912959 ATAGCCAAAGCTAT-TCCCACTCGTACACTAAGTGCTCTAT
1 ATAGCCAAAGCTATCT-CAACTCGTACACTAAGTGCTCTAT
36912999 ATAGC
1 ATAGC
36913004 TGAAGTTATC
Statistics
Matches: 68, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
40 24 0.35
41 43 0.63
42 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (40 bp):
ATAGCCAAAGCTATCTCAACTCGTACACTAAGTGCTCTAT
Found at i:36916317 original size:43 final size:42
Alignment explanation
Indices: 36916170--36916328 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
36916160 TGTGTTATCG
* *
36916170 TGTAAGACCACGTCTGGGACGTTGCCATTGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGA-TTTTGA-TTACA
* * * *
36916214 TGTAAGACCACGTCTGGGACGTTGGCA-TCATGCTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGAT-TTTGATTACA
36916256 TGTAAGACC-CTGTCTGGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATTGAT-TTTGATTACA
* *
36916299 TGTAAGACCACGTTTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
36916329 TACGAGCTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 40 0.42
44 27 0.28
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATTTTGATTACA
Found at i:36916341 original size:86 final size:86
Alignment explanation
Indices: 36916167--36916326 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 86
36916157 ATATGTGTTA
36916167 TCGTGTAAGACCACGTCTGGGACGTTGCCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
1 TCGTGTAAGACCACGTCTGGGACGTTGCCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
* **
36916232 ACGTTGGCATCATGCTTGATT
66 ACGTTGGCATCATACGAGATT
* * *
36916253 TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATTGA-TATTTGA-TTACATGTAAGACCACGTTT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGCCATTGACT-TATGATTTACATGTAAGACCACGTCT
*
36916314 GGGATGTTGGCAT
63 GGGACGTTGGCAT
36916327 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
85 33 0.49
86 33 0.49
87 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (86 bp):
TCGTGTAAGACCACGTCTGGGACGTTGCCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
ACGTTGGCATCATACGAGATT
Found at i:36916800 original size:42 final size:43
Alignment explanation
Indices: 36916694--36916813 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 43
36916684 ATATGTGTTA
* *
36916694 TCGTGTAAGACCATGTCTGGGACGTTGGCATTGACTTATGATT
1 TCGTGTAAGACCCTGTCTGGGACATTGGCATTGACTTATGATT
*
36916737 TACATGTAAGACCAC-GTCTGGGACATTGGCATCATG-C-T-TGATT
1 T-CGTGTAAGACC-CTGTCTGGGACATTGGCAT--TGACTTATGATT
* *
36916780 TCGTGTAAAACCCTGTCTGGGACAGTGGCATTGA
1 TCGTGTAAGACCCTGTCTGGGACATTGGCATTGA
36916814 TATTTGATTA
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
40 2 0.03
41 1 0.02
42 25 0.38
43 7 0.11
44 27 0.42
45 1 0.02
46 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCCTGTCTGGGACATTGGCATTGACTTATGATT
Found at i:36916852 original size:43 final size:42
Alignment explanation
Indices: 36916697--36916855 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
36916687 TGTGTTATCG
* *
36916697 TGTAAGACCATGTCTGGGACGTTGGCATTGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGA-TTTTGA-TTACA
* * * * *
36916741 TGTAAGACCACGTCTGGGACATTGGCA-TCATGCTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGAT-TTTGATTACA
*
36916783 TGTAAAACC-CTGTCTGGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATTGAT-TTTGATTACA
* *
36916826 TGTAAGACCACGTTTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
36916856 TACGAGCTTT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 38 0.41
44 26 0.28
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATTTTGATTACA
Found at i:36916862 original size:527 final size:527
Alignment explanation
Indices: 36915869--36916928 Score: 2039
Period size: 527 Copynumber: 2.0 Consensus size: 527
36915859 AGGTTAAATT
*
36915869 TGAATTTATATAGATCAAGAACAAAAGAAAACGAAATTAGATCGGGGAAAGTCAAAAGTCGTTGA
1 TGAATTTATATAGATCAAGAACAAAAGAAAACGAAATTAGATCGGGGAAAGTAAAAAGTCGTTGA
36915934 TTAGTCGATTCCATCTATCCGAATCCGTATGAGGTAAGTCGATATACAAATGAATGTATTTTGAA
66 TTAGTCGATTCCATCTATCCGAATCCGTATGAGGTAAGTCGATATACAAATGAATGTATTTTGAA
*
36915999 TTGAATTATTACTAATTATATGATTTTGAACAATGTTGAATCAATATATCTGTTGAGAATGATAT
131 TTGAATTATTACTAATTATATGATTTTGAACAATGTTGAATCAATATATCTATTGAGAATGATAT
36916064 ATCTGAGAAAGTAATGACTAAGTTCCGATGTCCGGAAAGCCCTGTACGAACCTTAAGAAAAGTTA
196 ATCTGAGAAAGTAATGACTAAGTTCCGATGTCCGGAAAGCCCTGTACGAACCTTAAGAAAAGTTA
36916129 GGATACATATGTCATGACATAGGATCTGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTG
261 GGATACATATGTCATGACATAGGATCTGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTG
*
36916194 CCATTGACTTATGATTTACATGTAAGACCACGTCTGGGACGTTGGCATCATGCTTGATTTCGTGT
326 CCATTGACTTATGATTTACATGTAAGACCACGTCTGGGACATTGGCATCATGCTTGATTTCGTGT
*
36916259 AAGACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTTTGGGATGTTGG
391 AAAACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTTTGGGATGTTGG
36916324 CATTGTACGAGCTTTTCGAGGTATCCGCATATCCTTATGATTTAGAACAATTCAATGGGAATTCT
456 CATTGTACGAGCTTTTCGAGGTATCCGCATATCCTTATGATTTAGAACAATTCAATGGGAATTCT
*
36916389 GAGAAAA
521 AAGAAAA
36916396 TGAATTTATATAGATCAAGAACAAAAGAAAACGAAATTAGATCGGGGAAAGTAAAAAGTCGTTGA
1 TGAATTTATATAGATCAAGAACAAAAGAAAACGAAATTAGATCGGGGAAAGTAAAAAGTCGTTGA
*
36916461 TTAGTCGATTCCATCTATCTGAATCCGTATGAGGTAAGTCGATATACAAATGAATGTATTTTGAA
66 TTAGTCGATTCCATCTATCCGAATCCGTATGAGGTAAGTCGATATACAAATGAATGTATTTTGAA
36916526 TTGAATTATTACTAATTATATGATTTTGAACAATGTTGAATCAATATATCTATTGAGAATGATAT
131 TTGAATTATTACTAATTATATGATTTTGAACAATGTTGAATCAATATATCTATTGAGAATGATAT
36916591 ATCTGAGAAAGTAATGACTAAGTTCCGATGTCCGGAAAGCCCTGTACGAACCTTAAGAAAAGTTA
196 ATCTGAGAAAGTAATGACTAAGTTCCGATGTCCGGAAAGCCCTGTACGAACCTTAAGAAAAGTTA
*
36916656 GGATACATATGTCATGACATAGGATCTGATATGTGTTATCGTGTAAGACCATGTCTGGGACGTTG
261 GGATACATATGTCATGACATAGGATCTGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTG
*
36916721 GCATTGACTTATGATTTACATGTAAGACCACGTCTGGGACATTGGCATCATGCTTGATTTCGTGT
326 CCATTGACTTATGATTTACATGTAAGACCACGTCTGGGACATTGGCATCATGCTTGATTTCGTGT
36916786 AAAACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTTTGGGATGTTGG
391 AAAACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTTTGGGATGTTGG
*
36916851 CATTGTACGAGCTTTTCGAGGTATCCGCATATCCTTATGATTTAGAACAGTTCAATGGGAATTCT
456 CATTGTACGAGCTTTTCGAGGTATCCGCATATCCTTATGATTTAGAACAATTCAATGGGAATTCT
36916916 AAGAAAA
521 AAGAAAA
36916923 TGAATT
1 TGAATT
36916929 ATGATGTGAA
Statistics
Matches: 524, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
527 524 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (527 bp):
TGAATTTATATAGATCAAGAACAAAAGAAAACGAAATTAGATCGGGGAAAGTAAAAAGTCGTTGA
TTAGTCGATTCCATCTATCCGAATCCGTATGAGGTAAGTCGATATACAAATGAATGTATTTTGAA
TTGAATTATTACTAATTATATGATTTTGAACAATGTTGAATCAATATATCTATTGAGAATGATAT
ATCTGAGAAAGTAATGACTAAGTTCCGATGTCCGGAAAGCCCTGTACGAACCTTAAGAAAAGTTA
GGATACATATGTCATGACATAGGATCTGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTG
CCATTGACTTATGATTTACATGTAAGACCACGTCTGGGACATTGGCATCATGCTTGATTTCGTGT
AAAACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTTTGGGATGTTGG
CATTGTACGAGCTTTTCGAGGTATCCGCATATCCTTATGATTTAGAACAATTCAATGGGAATTCT
AAGAAAA
Found at i:36916868 original size:86 final size:86
Alignment explanation
Indices: 36916694--36916853 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 86
36916684 ATATGTGTTA
*
36916694 TCGTGTAAGACCATGTCTGGGACGTTGGCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
1 TCGTGTAAAACCATGTCTGGGACGTTGGCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
* **
36916759 ACATTGGCATCATGCTTGATT
66 ACATTGGCATCATACGAGATT
* * *
36916780 TCGTGTAAAACCCTGTCTGGGACAG-TGGCATTGA-TATTTGA-TTACATGTAAGACCACGTTTG
1 TCGTGTAAAACCATGTCTGGGAC-GTTGGCATTGACT-TATGATTTACATGTAAGACCACGTCTG
**
36916842 GGATGTTGGCAT
64 GGACATTGGCAT
36916854 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 31 0.47
86 34 0.52
87 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (86 bp):
TCGTGTAAAACCATGTCTGGGACGTTGGCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
ACATTGGCATCATACGAGATT
Found at i:36929680 original size:17 final size:17
Alignment explanation
Indices: 36929658--36929703 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
36929648 GTATATGCAA
36929658 ATTTTGTGAAATTTGTG
1 ATTTTGTGAAATTTGTG
*
36929675 ATTTTGTGAAATTTTTG
1 ATTTTGTGAAATTTGTG
36929692 ATTTTGTGAAAT
1 ATTTTGTGAAAT
36929704 AAGGACTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (17 bp):
ATTTTGTGAAATTTGTG
Found at i:36930215 original size:42 final size:44
Alignment explanation
Indices: 36930133--36930275 Score: 129
Period size: 43 Copynumber: 3.3 Consensus size: 44
36930123 ATGTCTGAGA
*
36930133 CGTTGGCATCG-ACTTATGATTTACATGTAAGATCACATCTAGG-G
1 CGTTGGCATCGTA-TT-TGATTTACATGTAAGAACACATCTAGGAG
* * *
36930177 CGTTGGCATCGTATTTGATTT-CGTGTAAGAACATATCTAGGAT
1 CGTTGGCATCGTATTTGATTTACATGTAAGAACACATCTAGGAG
* * *
36930220 AG-TGGCATCGATATTTGA-TTACATGTAA-AACCACGTCTGGGA-
1 CGTTGGCATCG-TATTTGATTTACATGTAAGAA-CACATCTAGGAG
*
36930262 CGTTGGCATTGTAT
1 CGTTGGCATCGTAT
36930276 GAGCTTTCCA
Statistics
Matches: 82, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
42 33 0.40
43 35 0.43
44 13 0.16
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (44 bp):
CGTTGGCATCGTATTTGATTTACATGTAAGAACACATCTAGGAG
Found at i:36930269 original size:43 final size:43
Alignment explanation
Indices: 36930099--36930270 Score: 122
Period size: 43 Copynumber: 4.0 Consensus size: 43
36930089 ACATAGGATC
* * ** *
36930099 CGATATGTG-TTATCATGTAAGACCATGTCTGAGACGTTGGCAT
1 CGATATTTGATTA-CATGTAAAACCACATCTGGGACGTTGGCAT
* * *
36930142 CGACT-TATGATTTACATGTAAGATCACATCTAGGG-CGTTGGCAT
1 CGA-TATTTGA-TTACATGTAAAACCACATCT-GGGACGTTGGCAT
* * * * *
36930186 CG-TATTTGATTTCGTGTAAGAA-CATATCTAGGATAG-TGGCAT
1 CGATATTTGATTACATGTAA-AACCACATCTGGGA-CGTTGGCAT
*
36930228 CGATATTTGATTACATGTAAAACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACATGTAAAACCACATCTGGGACGTTGGCAT
36930271 TGTATGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
41 2 0.02
42 26 0.26
43 41 0.41
44 26 0.26
45 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAAACCACATCTGGGACGTTGGCAT
Found at i:36939246 original size:50 final size:50
Alignment explanation
Indices: 36939128--36939514 Score: 572
Period size: 50 Copynumber: 7.9 Consensus size: 50
36939118 TTGATGCATA
* * *
36939128 AGATATGTATATGTGGTAAAGCCAAATGGCTAATGTG-AA-ATCTGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36939176 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * **
36939226 AAATATGTATATGTGGTAAAGCTGAATGATTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
36939276 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATACG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36939326 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36939374 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* *
36939424 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36939472 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
36939515 GTAGGCAATG
Statistics
Matches: 310, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.00
48 121 0.39
49 10 0.03
50 177 0.57
51 1 0.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:36939321 original size:98 final size:98
Alignment explanation
Indices: 36939128--36939514 Score: 614
Period size: 98 Copynumber: 3.9 Consensus size: 98
36939118 TTGATGCATA
* *
36939128 AGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATCTGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
36939193 AAAGCCGAATGGCTAATGCGAAATATATATATG
66 AAAGCCGAATGGCTAATGTGAAATATATATATG
* * ** *
36939226 AAATATGTATATGTGGTAAAGCTGAATGATTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
* * *
36939291 GTAAAGCTGAATGGTTAATGTGAAATATATATACG
64 GTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36939326 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
36939391 AAAGCCGAATGG-TCAATGTGAAATATATATATG
66 AAAGCCGAATGGCT-AATGTGAAATATATATATG
*
36939424 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
36939489 AAAGCCGAATGGCTAGTGTGAAATAT
66 AAAGCCGAATGGCTAATGTGAAATAT
36939515 GTAGGCAATG
Statistics
Matches: 263, Mismatches: 22, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
97 1 0.00
98 171 0.65
99 5 0.02
100 86 0.33
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:36939772 original size:37 final size:37
Alignment explanation
Indices: 36939664--36939772 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
36939654 GGAAATATAT
*
36939664 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
36939701 CCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
36939738 TCCGCGTAAGACCCGATAACTTCGTCTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
36939773 CATCAGAGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:36952706 original size:46 final size:45
Alignment explanation
Indices: 36952656--36952831 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
36952646 TGGTTGAGCA
36952656 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
36952702 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
36952747 CATCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
36952795 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36952832 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Done.