Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 112 of 295
Found at i:36952812 original size:93 final size:93
Alignment explanation
Indices: 36952653--36952824 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
36952643 GGATGGTTGA
* *
36952653 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36952718 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
36952746 GCATCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36952811 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36952825 CTTATGGGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36960278 original size:47 final size:47
Alignment explanation
Indices: 36960224--36960511 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
36960214 TTAGGATTTT
** *
36960224 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36960271 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36960318 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36960365 ATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36960412 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
36960459 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36960506 ATGTGA
1 ATGTGA
36960512 AATATATATA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36960326 original size:25 final size:25
Alignment explanation
Indices: 36960251--36960326 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
36960241 GTGTATATAT
36960251 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
36960276 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
36960298 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
36960323 GTGA
1 GTGA
36960327 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:36960467 original size:25 final size:25
Alignment explanation
Indices: 36960392--36960467 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
36960382 ATGCATACAT
36960392 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
36960417 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
36960439 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
36960464 GTGA
1 GTGA
36960468 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:36960477 original size:141 final size:141
Alignment explanation
Indices: 36960223--36960511 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
36960213 TTTAGGATTT
** * *
36960223 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
36960288 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
36960353 GCCGAATGGCC
131 GCCGAATGGCC
36960364 TATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
36960429 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
36960494 GCCGAATGGTC
131 GCCGAATGGCC
*
36960505 AATGTGA
1 TATGTGA
36960512 AATATATATA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:36960562 original size:94 final size:93
Alignment explanation
Indices: 36960246--36960553 Score: 377
Period size: 94 Copynumber: 3.2 Consensus size: 93
36960236 TGAATGTGTA
* * *
36960246 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
*
36960311 ATGGCCAATGTGGTGAATATGA-ACATG
66 ATGGCCAATGTGATGAATATGAGACATG
* * *
36960338 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATACATGTGATAAGGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
*
36960403 GAATGGCCAATGTGATGAATGTGAG-CATG
64 GAATGGCCAATGTGATGAATATGAGACATG
* * * *
36960432 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
* * *
36960497 GAATGGTCAATGTGAAATATATATATGAGATATG
64 GAATGGCCAATGTG--AT-GA-ATATGAGACATG
* *
36960531 TATATGTGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
36960554 TAGTGTGAAA
Statistics
Matches: 188, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
94 156 0.83
96 2 0.01
97 21 0.11
98 6 0.03
99 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (93 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAGACATG
Found at i:36960861 original size:37 final size:37
Alignment explanation
Indices: 36960716--36960860 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
36960706 GGAAATATAT
*
36960716 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36960753 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36960790 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* **
36960827 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36960861 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36989662 original size:17 final size:17
Alignment explanation
Indices: 36989640--36989675 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36989630 TAGATAAGAC
36989640 ACATAAATTAGTTTGAA
1 ACATAAATTAGTTTGAA
36989657 ACATAAATTAGTTTGAA
1 ACATAAATTAGTTTGAA
36989674 AC
1 AC
36989676 TAACTCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.33
Consensus pattern (17 bp):
ACATAAATTAGTTTGAA
Found at i:37015782 original size:43 final size:42
Alignment explanation
Indices: 37015661--37015817 Score: 156
Period size: 43 Copynumber: 3.6 Consensus size: 42
37015651 TGTGTTATCG
* * *
37015661 TGTAAGACCATGTTTGGGACATTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGAC-GTGGCATCGA-TATTTGATTT-CA
* * * *
37015705 TGTAAGACCATGTCTAGGACGTGGGAATTG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGT-GGCATCGATATTTGATTTCA
* *
37015747 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTGGCATCGATATTTGATTTCA
*
37015790 TGTAAGACCAAGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACG-TGGCAT
37015818 TGTACTAGAT
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 26 0.28
43 44 0.47
44 23 0.25
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTGGCATCGATATTTGATTTCA
Found at i:37015830 original size:85 final size:86
Alignment explanation
Indices: 37015658--37015830 Score: 233
Period size: 85 Copynumber: 2.0 Consensus size: 86
37015648 ATATGTGTTA
* * *
37015658 TCGTGTAAGACCATGTTTGGGACATTGGCATCGACTTATGATTTACATGTAAGACCATGTCTAGG
1 TCGTGTAAGACCATGTCTGGGACAGTGGCATCGACTTATGATTTACATGTAAGACCAAGTCTAGG
* *
37015723 ACGTGGGAATTGTATTTGATT
66 ACGTGGGAATTGTACTAGATT
* * *
37015744 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGA-TATTTGA-TTACATGTAAGACCAAGTCTGG
1 TCGTGTAAGACCATGTCTGGGACAGTGGCATCGACT-TATGATTTACATGTAAGACCAAGTCTAG
* *
37015807 GACGTTGGCATTGTACTAGATT
65 GACGTGGGAATTGTACTAGATT
37015829 TC
1 TC
37015831 AGAGCTATCC
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
85 41 0.54
86 35 0.46
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (86 bp):
TCGTGTAAGACCATGTCTGGGACAGTGGCATCGACTTATGATTTACATGTAAGACCAAGTCTAGG
ACGTGGGAATTGTACTAGATT
Found at i:37028435 original size:39 final size:40
Alignment explanation
Indices: 37028392--37028614 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
37028382 TCCTCGTTCA
* * * * *
37028392 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37028431 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37028471 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37028511 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37028551 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37028591 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37028615 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37036339 original size:39 final size:40
Alignment explanation
Indices: 37036296--37036517 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
37036286 TCCTCGTTCA
* * * * *
37036296 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37036335 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37036375 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37036415 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37036455 AAGGCCTTC-GGATCTT-ATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37036494 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37036518 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
39 59 0.37
40 101 0.63
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37036397 original size:79 final size:79
Alignment explanation
Indices: 37036294--37036517 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
37036284 GCTCCTCGTT
* * * *
37036294 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGA
37036359 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* *
37036373 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACTTAACCCGG
* *
37036438 ATTTAGTATCTCGCA
65 ATTTAATAACTCGCA
* * * * * * * *
37036453 CAAAGGCCTTC-GGATCTT-ATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACAATGCCTTCGGGACTTAACCCG
37036516 GA
64 GA
37036518 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 73 0.59
80 51 0.41
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGA
TTTAATAACTCGCA
Found at i:37036477 original size:119 final size:119
Alignment explanation
Indices: 37036296--37036517 Score: 279
Period size: 119 Copynumber: 1.9 Consensus size: 119
37036286 TCCTCGTTCA
* * * *
37036296 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
37036361 TAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
37036415 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTT-ATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* * *
37036478 TATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
37036518 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
119 71 0.82
120 16 0.18
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37043048 original size:28 final size:28
Alignment explanation
Indices: 37042964--37043054 Score: 134
Period size: 27 Copynumber: 3.3 Consensus size: 28
37042954 ATTTACTAAA
37042964 ATACCCCTAAGTATAGC--AATTACCATT
1 ATACCCCTAAGTAT-GCAAAATTACCATT
*
37042991 ATACACCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAGTATGCAAAATTACCATT
*
37043018 ATACCCCTAAGTATGCAAAATTACCACT
1 ATACCCCTAAGTATGCAAAATTACCATT
37043046 ATACCCCTA
1 ATACCCCTA
37043055 GGGTTAATTT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 37 0.64
28 20 0.34
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.27
Consensus pattern (28 bp):
ATACCCCTAAGTATGCAAAATTACCATT
Found at i:37043229 original size:27 final size:26
Alignment explanation
Indices: 37043157--37043272 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 26
37043147 ATGGAGGAAG
37043157 TGTTCTGGTGGCTATGCCACAATTATC
1 TGTTCTGGTGGCTATGCCACAA-TATC
37043184 TGTTTCTGGTGGCTATGCCACAGATATC
1 TG-TTCTGGTGGCTATGCCACA-ATATC
* *
37043212 TGTTCTGGTCGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
37043238 T-TTAACTGGTGACTCTGTCACAATATC
1 TGTT--CTGGTGGCTATGCCACAATATC
37043265 TGTTCTGG
1 TGTTCTGG
37043273 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
25 2 0.03
26 10 0.13
27 39 0.49
28 27 0.34
29 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:37050370 original size:68 final size:67
Alignment explanation
Indices: 37050298--37050447 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
37050288 CATCATGTGT
* * * *
37050298 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
37050360 ATGTAG
62 ATGTAG
** * *
37050366 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
37050431 AG
66 AG
37050433 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
37050448 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:37050403 original size:64 final size:64
Alignment explanation
Indices: 37050322--37050505 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
37050312 AGACATTATG
* *
37050322 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
37050386 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37050451 AA
63 AA
* * * *
37050453 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
37050506 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37052630 original size:34 final size:35
Alignment explanation
Indices: 37052591--37052662 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 35
37052581 ACAACCAAAC
37052591 TTCGATTAT-ATATATTAATTCCAACCATATAAAA
1 TTCGATTATAATATATTAATTCCAACCATATAAAA
37052625 TTCGATTATAGCATATATTAATTCCAACCATATAAAA
1 TTCGATTATA--ATATATTAATTCCAACCATATAAAA
37052662 T
1 T
37052663 GAAATTCACT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 9 0.26
37 26 0.74
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (35 bp):
TTCGATTATAATATATTAATTCCAACCATATAAAA
Found at i:37053799 original size:27 final size:27
Alignment explanation
Indices: 37053690--37053807 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
37053680 TGGATAAGTT
* *
37053690 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
37053717 GTAGAAGTA-TCGAAATACCCTTGTAGA
1 GTAGAATTACT-GAAATACCCCTGTAGG
* *
37053744 GTAGAAATACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
37053771 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
37053798 GTAAAATTAC
1 GTAGAATTAC
37053808 CATTTTGCCC
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
27 73 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:37054506 original size:27 final size:26
Alignment explanation
Indices: 37054462--37054513 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37054452 CTCACTGCAA
*
37054462 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37054489 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
37054514 GCATTCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37054612 original size:27 final size:26
Alignment explanation
Indices: 37054556--37054615 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
37054546 ATATCTATAT
* *
37054556 ATATCTGTTCTTGTGGCCTCGCCACA
1 ATATCTGTTCTAGTGACCTCGCCACA
* *
37054582 ATATCTGTATCTAGTGACTTCGTCACA
1 ATATCTGT-TCTAGTGACCTCGCCACA
37054609 ATATCTG
1 ATATCTG
37054616 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTAGTGACCTCGCCACA
Found at i:37059628 original size:12 final size:12
Alignment explanation
Indices: 37059611--37059640 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
37059601 TACAGGTTTG
37059611 ACACGGCCTAGC
1 ACACGGCCTAGC
37059623 ACACGGCCTAGC
1 ACACGGCCTAGC
37059635 ACACGG
1 ACACGG
37059641 GGGTGTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:37063193 original size:55 final size:54
Alignment explanation
Indices: 37063125--37063263 Score: 138
Period size: 53 Copynumber: 2.6 Consensus size: 54
37063115 GGTAAGGAAA
* *
37063125 TCATGTAATACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGAT-C
1 TCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAAGATAC
* * * * * * *
37063180 TCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 TCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
** *
37063234 -CACATAAGACCATGTCAAGACATGGAAATG
1 TCATGTAAGACCATGTCAAGACATGGCAATG
37063264 GTAAGTTTAA
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
53 37 0.54
54 4 0.06
55 28 0.41
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.22
Consensus pattern (54 bp):
TCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
Found at i:37066513 original size:207 final size:207
Alignment explanation
Indices: 37066158--37066571 Score: 810
Period size: 207 Copynumber: 2.0 Consensus size: 207
37066148 ACAATTTGAG
37066158 TGTACTGCGGACTACTGTACTACACCGTACAGTACATATGTCAACATCATTAGGTATCATTGACA
1 TGTACTGCGGACTACTGTACTACACCGTACAGTACATATGTCAACATCATTAGGTATCATTGACA
37066223 GAACTGGTAGTTTAACTGCAACCTACCAGTATAGCGATTTTACACATTGCATTGTCCCGCATGTA
66 GAACTGGTAGTTTAACTGCAACCTACCAGTATAGCGATTTTACACATTGCATTGTCCCGCATGTA
37066288 CGTTAGCTATGTTATGTACTATTATCTGATCTGGCAGTTCATACTGCTTATCTGTACTACGATTT
131 CGTTAGCTATGTTATGTACTATTATCTGATCTGGCAGTTCATACTGCTTATCTGTACTACGATTT
37066353 ATCGCATTGCAC
196 ATCGCATTGCAC
37066365 TGTACTGCGGACTACTGTACTACACCGTACAGTACATATGTCAACATCATTAGGTATCATTGACA
1 TGTACTGCGGACTACTGTACTACACCGTACAGTACATATGTCAACATCATTAGGTATCATTGACA
37066430 GAACTGGTAGTTTAACTGCAACCTACCAGTATAGCGATTTTACACATTGCATTGTCCCGCATGTA
66 GAACTGGTAGTTTAACTGCAACCTACCAGTATAGCGATTTTACACATTGCATTGTCCCGCATGTA
* *
37066495 CGTTAGCTATGTTATGTACTATTATCTGATCTGGCAGTTCATATTGCTTGTCTGTACTACGATTT
131 CGTTAGCTATGTTATGTACTATTATCTGATCTGGCAGTTCATACTGCTTATCTGTACTACGATTT
37066560 ATCGCATTGCAC
196 ATCGCATTGCAC
37066572 AGTATAGCTT
Statistics
Matches: 205, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 205 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (207 bp):
TGTACTGCGGACTACTGTACTACACCGTACAGTACATATGTCAACATCATTAGGTATCATTGACA
GAACTGGTAGTTTAACTGCAACCTACCAGTATAGCGATTTTACACATTGCATTGTCCCGCATGTA
CGTTAGCTATGTTATGTACTATTATCTGATCTGGCAGTTCATACTGCTTATCTGTACTACGATTT
ATCGCATTGCAC
Found at i:37080242 original size:47 final size:47
Alignment explanation
Indices: 37080182--37080298 Score: 171
Period size: 47 Copynumber: 2.5 Consensus size: 47
37080172 GCATTGGCAC
*
37080182 TAAGACAAGGATACCATGTAAGACCACGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCACGTTTGGAACATGACATTTGG
* *
37080229 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCACGTTTGGAACATGACATTTGG
* * **
37080276 TAAGATAAAGATATTATGTAAGA
1 TAAGACAAGGATACCATGTAAGA
37080299 ACATCCCAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCACGTTTGGAACATGACATTTGG
Found at i:37080406 original size:55 final size:54
Alignment explanation
Indices: 37080310--37080476 Score: 214
Period size: 55 Copynumber: 3.1 Consensus size: 54
37080300 CATCCCAATG
* * * *
37080310 CATGGCATTGATAAGTTCTATAAGGCATGGAAATCATGTAAGACCATGTCAAGA
1 CATGGCATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
* * *
37080364 CATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGG
1 CATGGCATTGATGAGTT-CTATAAGGC-AAGGATACCATGTAAGACCATGTCAAGA
*
37080419 CATGGCATTTG-TGAGTTC-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGA
1 CATGGCA-TTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
37080472 CATGG
1 CATGG
37080477 AAATGGTAAG
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
52 4 0.04
53 31 0.32
54 17 0.17
55 40 0.41
56 6 0.06
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGGCATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
Found at i:37080464 original size:53 final size:54
Alignment explanation
Indices: 37080291--37080476 Score: 209
Period size: 55 Copynumber: 3.4 Consensus size: 54
37080281 TAAAGATATT
* * * * * *
37080291 ATGTAAGAACATCCCAATG-CATGGCATTGATAAGTTCTATAAGGCATGGAAATC
1 ATGTAAGACCATGCCAA-GACATGGCATTGATGAGTTCTATAAGGCAAGGATACC
* *
37080345 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCC
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATACC
*
37080400 ATGTAAGACCATGCCAAGGCATGGCATTTG-TGAGTTC-ATAAGGCAAGGATACC
1 ATGTAAGACCATGCCAAGACATGGCA-TTGATGAGTTCTATAAGGCAAGGATACC
* *
37080453 ACGTAAGACCATGTCAAGACATGG
1 ATGTAAGACCATGCCAAGACATGG
37080477 AAATGGTAAG
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
52 4 0.04
53 32 0.28
54 31 0.27
55 40 0.35
56 6 0.05
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACC
Found at i:37088174 original size:15 final size:15
Alignment explanation
Indices: 37088154--37088184 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37088144 AAAAATAAGC
37088154 TTCACACTCTTTTCT
1 TTCACACTCTTTTCT
37088169 TTCACACTCTTTTCT
1 TTCACACTCTTTTCT
37088184 T
1 T
37088185 ACATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (15 bp):
TTCACACTCTTTTCT
Found at i:37093883 original size:32 final size:32
Alignment explanation
Indices: 37093842--37093905 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
37093832 AAAGTTTATA
37093842 GGGTTAAGGAAACTTACTAGTTCCCAATATTT
1 GGGTTAAGGAAACTTACTAGTTCCCAATATTT
37093874 GGGTTAAGGAAACTTACTAGTTCCCAATATTT
1 GGGTTAAGGAAACTTACTAGTTCCCAATATTT
37093906 CTACTTCTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (32 bp):
GGGTTAAGGAAACTTACTAGTTCCCAATATTT
Found at i:37096939 original size:40 final size:40
Alignment explanation
Indices: 37096801--37096932 Score: 221
Period size: 40 Copynumber: 3.3 Consensus size: 40
37096791 GACTAAGATT
37096801 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
37096841 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* *
37096881 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCC
*
37096921 CGAATGCATTTG
1 CGAAGGCATTTG
37096933 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 86 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:37096939 original size:80 final size:79
Alignment explanation
Indices: 37096801--37096965 Score: 217
Period size: 80 Copynumber: 2.1 Consensus size: 79
37096791 GACTAAGATT
* **
37096801 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTA
*
37096865 AATCCGGGTTAAGTCC
65 AATCC-GGTTAAATCC
* *
37096881 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAATGCATTTGAACGAGTAGCTA
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
* *
37096945 TATCCGGTTAAATTC
65 AATCCGGTTAAATCC
37096960 CGAAGG
1 CGAAGG
37096966 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 57 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATCC
Found at i:37100800 original size:14 final size:14
Alignment explanation
Indices: 37100781--37100824 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
37100771 CATAACTTAT
37100781 ATTATATACATATA
1 ATTATATACATATA
* *
37100795 ATTATATACATTTT
1 ATTATATACATATA
37100809 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
37100825 TATATTATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:37106104 original size:27 final size:26
Alignment explanation
Indices: 37106056--37106115 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
37106046 GCGAGGCTGC
*
37106056 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
37106083 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
37106109 CATATAT
1 CAGATAT
37106116 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37109503 original size:47 final size:47
Alignment explanation
Indices: 37109385--37109557 Score: 191
Period size: 45 Copynumber: 3.7 Consensus size: 47
37109375 GGATGGTTGA
*
37109385 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
37109433 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
37109476 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
37109525 -C-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
37109558 TAGGGGCGGG
Statistics
Matches: 108, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 33 0.31
46 30 0.28
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:37116907 original size:19 final size:20
Alignment explanation
Indices: 37116870--37116907 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37116860 ATAAGGTGGT
37116870 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37116890 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37116908 TGGTGATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37122173 original size:43 final size:41
Alignment explanation
Indices: 37122042--37122185 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 41
37122032 ACCCAAGTAT
* *
37122042 CTTCGGGATTTAG-CCGGATATAGCAACT-CACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATGC
* **
37122081 CTTCGGGTCTTAGCCCGGATATAGTC-ACTA-GCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTACGCACAAATGC
*
37122121 CTTCGGGACTTAGCCCGGGTATAGCAACTACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAC--GCACAAATGC
37122164 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37122186 CATCCGAATA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
39 12 0.14
40 46 0.52
41 1 0.01
43 29 0.33
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATGC
Found at i:37130169 original size:40 final size:40
Alignment explanation
Indices: 37130089--37130272 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 40
37130079 ACCCAAGTAT
* * *
37130089 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAGTGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
37130128 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
37130168 CTTCGGGACTTAGCTCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
37130211 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
37130251 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37130273 CATCCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 12 0.10
40 75 0.62
41 1 0.01
43 33 0.27
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37130224 original size:83 final size:79
Alignment explanation
Indices: 37130089--37130272 Score: 242
Period size: 83 Copynumber: 2.3 Consensus size: 79
37130079 ACCCAAGTAT
* * * *
37130089 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAGTGCCTTCGGGTCTTAGCCCAGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
**
37130154 ACTAGCATGAATGC
66 ACTAGCACAAATGC
* *
37130168 CTTCGGGACTTAGCTCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGC-CGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATAT
*
37130233 AGTAACTTGCACAAATGC
62 AGTAACTAGCACAAATGC
37130251 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
37130273 CATCCGAATA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 13 0.14
80 9 0.10
81 1 0.01
83 66 0.73
84 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
ACTAGCACAAATGC
Found at i:37134496 original size:27 final size:26
Alignment explanation
Indices: 37134448--37134507 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
37134438 GCGAGGCTGC
*
37134448 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
37134475 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
37134501 CATATAT
1 CAGATAT
37134508 ATATATCTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37147494 original size:22 final size:22
Alignment explanation
Indices: 37147469--37147512 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
37147459 ATACAAAAAG
*
37147469 ATAAACATATTTTTATATGCTT
1 ATAAACATATTTTTACATGCTT
37147491 ATAAACATATTTTTACATGCTT
1 ATAAACATATTTTTACATGCTT
37147513 TCATTTGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (22 bp):
ATAAACATATTTTTACATGCTT
Found at i:37149508 original size:37 final size:37
Alignment explanation
Indices: 37149467--37149545 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
37149457 TTGATGTCGA
* *
37149467 ATTTGTGGTCCCGAGACCACTATTTCGACTAGGCCCT
1 ATTTGTGGTCCCAAAACCACTATTTCGACTAGGCCCT
* * *
37149504 ATTTGTGGTCCTAAAACCACTGTTTTGACTAGGCCCT
1 ATTTGTGGTCCCAAAACCACTATTTCGACTAGGCCCT
37149541 ATTTG
1 ATTTG
37149546 GGATGTTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (37 bp):
ATTTGTGGTCCCAAAACCACTATTTCGACTAGGCCCT
Found at i:37153138 original size:22 final size:22
Alignment explanation
Indices: 37153096--37153138 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37153086 CACTAAGTCA
* *
37153096 ACAGAACGGCTCAACGCCGTAG
1 ACAGAACGGCTAAACGACGTAG
*
37153118 ACAGAACGGCTAAAGGACGTA
1 ACAGAACGGCTAAACGACGTA
37153139 AATATCCCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.26, G:0.28, T:0.09
Consensus pattern (22 bp):
ACAGAACGGCTAAACGACGTAG
Found at i:37154630 original size:28 final size:27
Alignment explanation
Indices: 37154590--37154649 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
37154580 CAGAAATAGT
* * * *
37154590 ATCAGGTGGGCCTTAGCCCATTAACAGA
1 ATCAGATGAGCCTAAGCCCAAT-ACAGA
*
37154618 ATCAGATGAGCCTAAGCTCAATACAGA
1 ATCAGATGAGCCTAAGCCCAATACAGA
37154645 ATCAG
1 ATCAG
37154650 TATCAGATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (27 bp):
ATCAGATGAGCCTAAGCCCAATACAGA
Found at i:37168235 original size:17 final size:17
Alignment explanation
Indices: 37168213--37168245 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37168203 ATCTTACCTC
37168213 ATAAGGGCAAAACAGTT
1 ATAAGGGCAAAACAGTT
37168230 ATAAGGGCAAAACAGT
1 ATAAGGGCAAAACAGT
37168246 GATTTTACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.15
Consensus pattern (17 bp):
ATAAGGGCAAAACAGTT
Found at i:37168289 original size:26 final size:27
Alignment explanation
Indices: 37168228--37168296 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
37168218 GGCAAAACAG
37168228 TTATAAGGGCAAAACAGTGATTTTACC
1 TTATAAGGGCAAAACAGTGATTTTACC
*
37168255 TCATAAGGGCAAAACAGT-ATTTTACC
1 TTATAAGGGCAAAACAGTGATTTTACC
* *
37168281 TTATTAGGGAAAAACA
1 TTATAAGGGCAAAACA
37168297 TTCATTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (27 bp):
TTATAAGGGCAAAACAGTGATTTTACC
Found at i:37170801 original size:12 final size:12
Alignment explanation
Indices: 37170784--37170809 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37170774 CCTTCATCTT
37170784 CTCCTAAAATCC
1 CTCCTAAAATCC
37170796 CTCCTAAAATCC
1 CTCCTAAAATCC
37170808 CT
1 CT
37170810 TCAGCCGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (12 bp):
CTCCTAAAATCC
Found at i:37173480 original size:24 final size:24
Alignment explanation
Indices: 37173453--37173500 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37173443 GTTCGAGGTC
37173453 GATTCCATGCCTTTCTTAATCTAT
1 GATTCCATGCCTTTCTTAATCTAT
37173477 GATTCCATGCCTTTCTTAATCTAT
1 GATTCCATGCCTTTCTTAATCTAT
37173501 AACAACAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.46
Consensus pattern (24 bp):
GATTCCATGCCTTTCTTAATCTAT
Found at i:37182034 original size:40 final size:40
Alignment explanation
Indices: 37181989--37182121 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
37181979 CTACTCGCTG
* * * *
37181989 AAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAGCCCGGATT-TGGTAACTCGCAC
*
37182029 CAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCAC
*
37182069 AAATGCCTTTGGGACTTAGCCCGGATTTGGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCAC
37182109 AAATGCCTTCGGG
1 AAATGCCTTCGGG
37182122 GCTAACACAA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 82 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCAC
Found at i:37182163 original size:61 final size:61
Alignment explanation
Indices: 37182066--37182182 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
37182056 TGGTAACTCG
* * * * *
37182066 CACAAATGCCTTTGGGACTTAGCCCGGATTTGGTAACTCGCACAAATGCCTTCGGGGCTAA
1 CACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCACACAAATGCCTTCGGGGCTAA
37182127 CACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCACACAAATGCCTTCGGG
1 CACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCACACAAATGCCTTCGGG
37182183 ACTTAGCCCG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (61 bp):
CACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCACACAAATGCCTTCGGGGCTAA
Found at i:37202449 original size:45 final size:45
Alignment explanation
Indices: 37202313--37202449 Score: 204
Period size: 45 Copynumber: 3.0 Consensus size: 45
37202303 CTAGGAATTT
* *
37202313 AGAAATTCGAA-CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
1 AGAAATCCGAACCT-GTTGAGTTGGTCCAAGTTCGTGATATATGTG
* * * *
37202358 AAAAATCCAAACTTGTTGAGTTGGTCCAAGTTAGTGATATATGTG
1 AGAAATCCGAACCTGTTGAGTTGGTCCAAGTTCGTGATATATGTG
37202403 AGAAATCCGAACCTGTTGAGTTGGTCCAAGTTCGTGATATATGTG
1 AGAAATCCGAACCTGTTGAGTTGGTCCAAGTTCGTGATATATGTG
37202448 AG
1 AG
37202450 GCATCTGAGC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 80 0.99
46 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (45 bp):
AGAAATCCGAACCTGTTGAGTTGGTCCAAGTTCGTGATATATGTG
Found at i:37202467 original size:45 final size:45
Alignment explanation
Indices: 37202315--37202524 Score: 172
Period size: 45 Copynumber: 4.7 Consensus size: 45
37202305 AGGAATTTAG
* *
37202315 AAATTCGAACTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAA
1 AAATCCGAACTCATTGAGTTGGTCCGAGTTCGTGATATATGTGAA
* ** * * *
37202360 AAATCCAAACTTGTTGAGTTGGTCCAAGTTAGTGATATATGTGAG
1 AAATCCGAACTCATTGAGTTGGTCCGAGTTCGTGATATATGTGAA
* * *
37202405 AAATCCGAAC-CTGTTGAGTTGGTCCAAGTTCGTGATATATGTGAG
1 AAATCCGAACTC-ATTGAGTTGGTCCGAGTTCGTGATATATGTGAA
** * * * * * ** *
37202450 GCATCTGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATG-CAA
1 AAATCCGAACTCATTGAGTTGGTCCGAGTTCGTGATATATGTGAA
** * *
37202494 GCATCTGAGCTCATTGAGTTGGTCCGAGTTC
1 AAATCCGAACTCATTGAGTTGGTCCGAGTTC
37202525 ATTGTGGATG
Statistics
Matches: 140, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
44 31 0.22
45 108 0.77
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (45 bp):
AAATCCGAACTCATTGAGTTGGTCCGAGTTCGTGATATATGTGAA
Found at i:37202509 original size:44 final size:44
Alignment explanation
Indices: 37202450--37202534 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
37202440 TATATGTGAG
*
37202450 GCATCTGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCAA
1 GCATCTGAGCTCATTGAGTTGGTCCGAGTTCATTATGGATGCAA
*
37202494 GCATCTGAGCTCATTGAGTTGGTCCGAGTTCATTGTGGATG
1 GCATCTGAGCTCATTGAGTTGGTCCGAGTTCATTATGGATG
37202535 TATATGTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.34
Consensus pattern (44 bp):
GCATCTGAGCTCATTGAGTTGGTCCGAGTTCATTATGGATGCAA
Found at i:37205306 original size:13 final size:13
Alignment explanation
Indices: 37205288--37205312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37205278 AGGCCGAGTG
37205288 AGGGACACGGGCC
1 AGGGACACGGGCC
37205301 AGGGACACGGGC
1 AGGGACACGGGC
37205313 GTCTGCTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:37207076 original size:37 final size:37
Alignment explanation
Indices: 37207018--37207162 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
37207008 TAGCTCGAAT
* * *
37207018 AATCCCCACACGTAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
37207055 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
37207092 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
37207129 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37207163 ATATATTTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:37207351 original size:48 final size:48
Alignment explanation
Indices: 37207295--37207583 Score: 488
Period size: 48 Copynumber: 6.0 Consensus size: 48
37207285 CGGCCACAAT
37207295 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* * *
37207343 ATATACATATCTCATACATATTTCACATTAGTCATTCAGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
37207391 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
37207439 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37207487 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37207535 ATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
37207583 A
1 A
37207584 CACATATATA
Statistics
Matches: 223, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 223 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:37211053 original size:29 final size:29
Alignment explanation
Indices: 37211017--37211150 Score: 89
Period size: 29 Copynumber: 4.6 Consensus size: 29
37211007 GTTGAAGAAC
*
37211017 TCGCACACACAGTGCCTCAATT-ACCAAT
1 TCGCACACACAGTGCCTCAATTAACGAAT
* * * ** *
37211045 CTTGCACACATAATGCC-CGGTTAAAGGAAT
1 -TCGCACACACAGTGCCTCAATT-AACGAAT
37211075 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTGCCTCAATTAAC-GAAT
* **
37211103 CTCGCACACATAGTG-CTCGGTTAACGGAAT
1 -TCGCACACACAGTGCCTCAATTAAC-GAAT
*
37211133 TTGCACACACAGTGCCTC
1 TCGCACACACAGTGCCTC
37211151 TAATCATTCG
Statistics
Matches: 78, Mismatches: 19, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
28 11 0.14
29 55 0.71
30 12 0.15
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCCTCAATTAACGAAT
Found at i:37211081 original size:58 final size:58
Alignment explanation
Indices: 37210986--37211150 Score: 242
Period size: 58 Copynumber: 2.9 Consensus size: 58
37210976 CCACTGACCG
* *
37210986 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACCA
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
* * * **
37211043 ATCTTGCACACATAATGCCCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
* *
37211101 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACACAGTGCCTC
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
37211151 TAATCATTCG
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
57 23 0.24
58 72 0.76
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (58 bp):
ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
Found at i:37211370 original size:43 final size:43
Alignment explanation
Indices: 37211304--37211607 Score: 500
Period size: 43 Copynumber: 7.1 Consensus size: 43
37211294 CCTTGCTCGA
** * *
37211304 ATCACCGGCATTAAGCCTTCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
37211347 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
37211390 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
37211433 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
37211476 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
37211519 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* * *
37211562 ATCACCGGTACGAAGCTTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
37211605 ATC
1 ATC
37211608 CCCGAGTTTC
Statistics
Matches: 244, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 244 1.00
ACGTcount: A:0.32, C:0.31, G:0.23, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:37213365 original size:37 final size:37
Alignment explanation
Indices: 37213307--37213414 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
37213297 TAGCTCGAAT
* * *
37213307 AATCCCCACACGTAGTTATCGGGTCTTACTCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
37213344 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
37213381 AATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37213415 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:37213607 original size:48 final size:48
Alignment explanation
Indices: 37213547--37213844 Score: 461
Period size: 48 Copynumber: 6.2 Consensus size: 48
37213537 CGGCCACAAT
*
37213547 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
**
37213595 ATATACATATCTCATACATATTTCACATTAGCCATTCGAATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* ** *
37213643 ATATATATATCTCATACATATTTCATGTTAGCAATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37213691 ATATACATATCTCATACATATTTCACATTAGCGATTCAGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37213739 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37213787 ATATACATATCTCAAACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
37213835 ACATATATAT
1 ATATACATAT
37213845 ATTTACCTTG
Statistics
Matches: 226, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 226 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:37218556 original size:44 final size:43
Alignment explanation
Indices: 37218410--37218560 Score: 141
Period size: 43 Copynumber: 3.5 Consensus size: 43
37218400 AGCTCGTACA
* * **
37218410 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAATCAAATGTCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGCAAATCAAA-AACG
* * *
37218453 ATGCC-ACTATCCCAAACAG-GGTCTTACA--CAAAGTCAAATATG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACATGCAAA-TCAAAAACG
*
37218495 ATGCCAACGTCCCAGACGTGGTCTTACATGCAAATCATAAAACG
1 ATGCCAACATCCCAGACGTGGTCTTACATGCAAATCA-AAAACG
*
37218539 ATGCCAACATCCTAGACGTGGT
1 ATGCCAACATCCCAGACGTGGT
37218561 TGATAAATCG
Statistics
Matches: 87, Mismatches: 12, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 26 0.30
43 31 0.36
44 29 0.33
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGCAAATCAAAAACG
Found at i:37225508 original size:42 final size:43
Alignment explanation
Indices: 37225403--37225556 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
37225393 AGTACAATGT
* *
37225403 CAATGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGC
1 CAATGTCCCAGACATGGTCTTACACGTAAATCAATATCGATGC
** *
37225446 CTCTATCCCAGACA-GAGTCTTACACG-AAATCAA-ATACGATGC
1 CAATGTCCCAGACATG-GTCTTACACGTAAATCAATAT-CGATGC
* * *
37225488 CAATGTCCCA-AGCATGGTCTTATACGTAAATCTCA-ATCGAGGC
1 CAATGTCCCAGA-CATGGTCTTACACGTAAATC-AATATCGATGC
** *
37225531 CTGTGTCCCAGACACGGTCTTACACG
1 CAATGTCCCAGACATGGTCTTACACG
37225557 ATATCTCAGA
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
41 3 0.03
42 31 0.35
43 51 0.57
44 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
CAATGTCCCAGACATGGTCTTACACGTAAATCAATATCGATGC
Found at i:37226065 original size:28 final size:28
Alignment explanation
Indices: 37226033--37226089 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
37226023 ACATATTTAA
*
37226033 TTCACAATTTAGTCCCTCAAA-A-CTCATT
1 TTCACAAATTAG-CCC-CAAATAGCTCATT
37226061 TTCACAAATTAGCCCCAAATAGCTCATT
1 TTCACAAATTAGCCCCAAATAGCTCATT
37226089 T
1 T
37226090 CATAAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 18 0.69
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (28 bp):
TTCACAAATTAGCCCCAAATAGCTCATT
Found at i:37229436 original size:18 final size:18
Alignment explanation
Indices: 37229413--37229465 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
37229403 TAGAAAGAAA
37229413 TATTTGATTTCTTTTTCC
1 TATTTGATTTCTTTTTCC
* *
37229431 TATTTGTTTTCCTTTT-C
1 TATTTGATTTCTTTTTCC
37229448 TA-TTGAGTTTTCTTTTTC
1 TATTTGA--TTTCTTTTTC
37229466 TTTTTTCAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 3 0.11
17 3 0.11
18 22 0.79
ACGTcount: A:0.09, C:0.15, G:0.08, T:0.68
Consensus pattern (18 bp):
TATTTGATTTCTTTTTCC
Found at i:37229466 original size:18 final size:17
Alignment explanation
Indices: 37229420--37229466 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
37229410 AAATATTTGA
*
37229420 TTTCTTTTTCCTATTTGT
1 TTTCTTTTT-CTATTAGT
*
37229438 TTTCCTTTTCTATTGAGT
1 TTTCTTTTTCTATT-AGT
37229456 TTTCTTTTTCT
1 TTTCTTTTTCT
37229467 TTTTTCAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.06, C:0.17, G:0.06, T:0.70
Consensus pattern (17 bp):
TTTCTTTTTCTATTAGT
Found at i:37230493 original size:220 final size:220
Alignment explanation
Indices: 37230146--37230937 Score: 1140
Period size: 220 Copynumber: 3.6 Consensus size: 220
37230136 CATGTTGATA
* * * ** ** * * *
37230146 TCTTTGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGCAATCTTTGATCTGCTCTCTGAC
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTG-TTTCTTCGATTTGTTCTCTGAC
** * * * * * * * *
37230210 AATACAGAGACACCAAATTATCTTAGATTTGCTTCAACATAAAC-GCGTGAAAGCCAAATCTGCT
65 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATC-TGAAGGTCAAATCTGCT
* * * * * *
37230274 ATGTCTTCGATTTGCTCATTGTAAACACGAGGATGCCAAATCATCTTGGATCTACTTTGATGTGA
129 ATGCCTTCGATTTGTTCCTTGTAAACACAAAGATGCCAAATCATCTTGGATCCACTTTGATGTGA
37230339 AAACATCCAAAGGTTAGATCTGCTATG
194 AAACATCCAAAGGTTAGATCTGCTATG
*
37230366 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
*
37230431 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTCAGATCTGCTAT
66 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTCAAATCTGCTAT
** * *
37230496 GCCTTCGATTTGTTCCTTGTAAATGCAAAGATGCCAAATCATCTTGGACCCGCTTTGATGTGAAA
131 GCCTTCGATTTGTTCCTTGTAAACACAAAGATGCCAAATCATCTTGGATCCACTTTGATGTGAAA
*
37230561 ACATCCAAAGGTTAGATCTTCTATG
196 ACATCCAAAGGTTAGATCTGCTATG
37230586 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* *
37230651 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGAGTAAACATTTGAAGGTCAAATCTGCTAT
66 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTCAAATCTGCTAT
* *
37230716 GCCTTCGATTTGTTCCTTGTAAACATAAAGATGCCAGATCATCTTGGATCCACTTTGATGTGAAA
131 GCCTTCGATTTGTTCCTTGTAAACACAAAGATGCCAAATCATCTTGGATCCACTTTGATGTGAAA
37230781 ACATCCAAAGGTTAGATCTGCTATG
196 ACATCCAAAGGTTAGATCTGCTATG
* * *
37230806 TCTTCGATATGCTCTCCGTCAAATATGGAGATGCCGAATCTGCTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* * * *
37230871 ATATAGAGATGCCAAATCATCTTGGATTTGCTTCAGTGTAAACATCTGAAGG-CTAGATCTGCTA
66 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTC-AAATCTGCTA
37230935 TGC
130 TGC
37230938 TTTAGCCTGT
Statistics
Matches: 518, Mismatches: 51, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
219 1 0.00
220 497 0.96
221 20 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTCAAATCTGCTAT
GCCTTCGATTTGTTCCTTGTAAACACAAAGATGCCAAATCATCTTGGATCCACTTTGATGTGAAA
ACATCCAAAGGTTAGATCTGCTATG
Found at i:37238667 original size:14 final size:16
Alignment explanation
Indices: 37238637--37238668 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
37238627 GATGCGATGT
37238637 AATGCTATGAGATGCA
1 AATGCTATGAGATGCA
37238653 AATGC-ATGA-ATGCA
1 AATGCTATGAGATGCA
37238667 AA
1 AA
37238669 AAGGACATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (16 bp):
AATGCTATGAGATGCA
Found at i:37241394 original size:38 final size:36
Alignment explanation
Indices: 37241352--37241435 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 36
37241342 GCACAAAAAT
* *
37241352 ATATATATAATCTTTAAATCCATTTA-ACATATGATATA
1 ATATATATAA-CTTTAAAACAATTTATA-ATA-GATATA
* *
37241390 ATATACATTACTTTAAAACAATTTATAATAGATATA
1 ATATATATAACTTTAAAACAATTTATAATAGATATA
*
37241426 AAATATATAA
1 ATATATATAA
37241436 AACTATGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
36 13 0.34
37 16 0.42
38 9 0.24
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.39
Consensus pattern (36 bp):
ATATATATAACTTTAAAACAATTTATAATAGATATA
Found at i:37241535 original size:26 final size:26
Alignment explanation
Indices: 37241495--37241550 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
37241485 ACGATATAAT
*
37241495 AATATAATAAATAATACGAATTTAAA
1 AATATAATAAATAATAAGAATTTAAA
** * *
37241521 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAAGAATTTAAA
37241547 AATA
1 AATA
37241551 GCATTTACTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAAGAATTTAAA
Found at i:37246011 original size:47 final size:47
Alignment explanation
Indices: 37245957--37246240 Score: 378
Period size: 47 Copynumber: 6.1 Consensus size: 47
37245947 TTAGGATTTT
** *
37245957 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37246004 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGACGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
37246051 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
37246098 ATGTGATGAATGTGAGCATGCATATATGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
37246145 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGG-CA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
37246191 A--TG-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
37246235 ATGTGA
1 ATGTGA
37246241 AATATATATA
Statistics
Matches: 207, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
43 33 0.16
44 5 0.02
46 5 0.02
47 164 0.79
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:37246059 original size:25 final size:25
Alignment explanation
Indices: 37245984--37246059 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
37245974 GTGTATATAT
*
37245984 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGACGAATGGCCAATGTG
* * *
37246009 ATGA-ATGTGA-GCAT-G-CATATGT-
1 GTGATAAG-GACGAATGGCCA-ATGTG
37246031 GTGATAAGGACGAATGGCCAATGTG
1 GTGATAAGGACGAATGGCCAATGTG
37246056 GTGA
1 GTGA
37246060 ATATGAACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 7 0.19
23 10 0.27
24 10 0.27
25 10 0.27
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGACGAATGGCCAATGTG
Found at i:37246179 original size:141 final size:137
Alignment explanation
Indices: 37245956--37246240 Score: 435
Period size: 141 Copynumber: 2.1 Consensus size: 137
37245946 TTTAGGATTT
** *
37245956 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
37246021 ATGCATATGTGTGATAAGGACGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGACGAATGG-CAA--T-GTGAATATGAACATGCATATATGTGATAAA
*
37246086 GCTGAATGGCC
127 GCCGAATGGCC
* *
37246097 TATGTGATGAATGTGAGCATGCATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* *
37246162 ATGCATATGTGTGATAAGGCCGAATGGCAATGTGAATATGAACATGCATATATGTGGTAAAGCCG
66 ATGCATATGTGTGATAAGGACGAATGGCAATGTGAATATGAACATGCATATATGTGATAAAGCCG
*
37246227 AATGGTC
131 AATGGCC
*
37246234 AATGTGA
1 TATGTGA
37246241 AATATATATA
Statistics
Matches: 133, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
137 43 0.32
138 1 0.01
140 3 0.02
141 86 0.65
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.28
Consensus pattern (137 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGACGAATGGCAATGTGAATATGAACATGCATATATGTGATAAAGCCG
AATGGCC
Found at i:37246495 original size:37 final size:37
Alignment explanation
Indices: 37246445--37246516 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
37246435 GGTAATATAT
* *
37246445 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
37246482 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
37246517 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:37251180 original size:15 final size:15
Alignment explanation
Indices: 37251160--37251190 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37251150 ATTCTCATAT
37251160 ACCATAATATCGTTC
1 ACCATAATATCGTTC
*
37251175 ACCATAATGTCGTTC
1 ACCATAATATCGTTC
37251190 A
1 A
37251191 TACACTCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (15 bp):
ACCATAATATCGTTC
Found at i:37258611 original size:33 final size:32
Alignment explanation
Indices: 37258552--37258615 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
37258542 ACGAAGTCAC
* *
37258552 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
37258584 CAGATATATATATGTGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
37258616 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:37270791 original size:30 final size:31
Alignment explanation
Indices: 37270755--37270818 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
37270745 ATTAAATTCG
* *
37270755 CCACACGGCCTA-GCACACGGGCATGTGAGA
1 CCACACGGCCTACCCACACGAGCATGTGAGA
*
37270785 CCACACGGCCTACCCACACGAGCATGTGTGA
1 CCACACGGCCTACCCACACGAGCATGTGAGA
37270816 CCA
1 CCA
37270819 TCCAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.27, C:0.38, G:0.25, T:0.11
Consensus pattern (31 bp):
CCACACGGCCTACCCACACGAGCATGTGAGA
Found at i:37272287 original size:11 final size:11
Alignment explanation
Indices: 37272260--37272295 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
37272250 AAATGTTACT
*
37272260 CAATTAACTAA
1 CAATTATCTAA
37272271 -AATTATCTAA
1 CAATTATCTAA
37272281 CAATTATCTAA
1 CAATTATCTAA
37272292 CAAT
1 CAAT
37272296 CACATCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (11 bp):
CAATTATCTAA
Found at i:37283783 original size:40 final size:40
Alignment explanation
Indices: 37283690--37283866 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
37283680 AAGCCAAGTA
* * *
37283690 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37283728 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37283768 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37283808 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37283848 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37283867 TTATCATCCG
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 93 0.76
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37290966 original size:47 final size:47
Alignment explanation
Indices: 37290893--37291265 Score: 644
Period size: 47 Copynumber: 8.0 Consensus size: 47
37290883 TGAATGATAG
**
37290893 TAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37290939 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37290986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37291033 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37291080 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37291126 TAAGGCCTAATAGCCGATGTGATGAATGTGAAA-TGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
37291172 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37291219 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37291266 CAAGCCGAGT
Statistics
Matches: 315, Mismatches: 9, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
46 103 0.33
47 212 0.67
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:37291134 original size:93 final size:94
Alignment explanation
Indices: 37290893--37291265 Score: 653
Period size: 93 Copynumber: 4.0 Consensus size: 94
37290883 TGAATGATAG
* *
37290893 TAAGGCCTAAT-GGCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
37290957 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
* * *
37290986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTTGTGATAAGGCCTAATGGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
37291051 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
* *
37291080 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
37291144 GTGATGAATGTGAAA-TGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
37291172 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
37291237 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
37291266 CAAGCCGAGT
Statistics
Matches: 266, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
92 14 0.05
93 161 0.61
94 91 0.34
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (94 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:37291145 original size:140 final size:140
Alignment explanation
Indices: 37290893--37291265 Score: 651
Period size: 140 Copynumber: 2.7 Consensus size: 140
37290883 TGAATGATAG
*
37290893 TAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
37290957 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA-TG
*
37291022 TATATTTGTGA
130 TATATGTGTGA
* * *
37291033 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
37291097 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAATGT
66 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAATGT
37291162 ATATGTGTGA
131 ATATGTGTGA
*
37291172 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
37291237 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
37291266 CAAGCCGAGT
Statistics
Matches: 220, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
139 57 0.26
140 132 0.60
141 31 0.14
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (140 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAATGT
ATATGTGTGA
Found at i:37291299 original size:45 final size:46
Alignment explanation
Indices: 37290910--37291320 Score: 421
Period size: 47 Copynumber: 8.8 Consensus size: 46
37290900 TAATGGCGAT
* * * *
37290910 GTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* * * *
37290957 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* * *
37291004 GTGATGAATGTGAAAGTGTATATTTGTGATAAGGCCTAATGGCCGAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* * * * * *
37291051 GTGATGAATGTGAAAGTGTATATGTGTGATAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGCCGAATGGCCAAC
* * * * *
37291097 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* * * * *
37291144 GTGATGAATGTGAAA-TGTATATGTGTGATAAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* * *
37291190 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAC
* *
37291237 GTGATGAATGTGAAAGTGTATATATGTGACAAGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGCCGAATGGCCAAC
* * * *
37291283 GT-ATGGATGTGGAAGTGCATAAATGTGATAAGTCCGAA
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG-CCGAA
37291321 AGGCATTTGT
Statistics
Matches: 339, Mismatches: 22, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
45 25 0.07
46 105 0.31
47 209 0.62
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (46 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGCCGAATGGCCAAC
Found at i:37293348 original size:43 final size:43
Alignment explanation
Indices: 37293300--37293445 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
37293290 TTGGTTTTCA
*
37293300 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37293343 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37293386 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37293429 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
37293446 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:37293462 original size:29 final size:29
Alignment explanation
Indices: 37293427--37293500 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
37293417 GTTGTGAGAT
* *
37293427 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
37293456 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
37293485 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37293501 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:37293859 original size:40 final size:40
Alignment explanation
Indices: 37293811--37294005 Score: 257
Period size: 40 Copynumber: 4.9 Consensus size: 40
37293801 TTGAATGATG
*
37293811 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
37293851 TCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
37293891 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * * *
37293931 TCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
37293970 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
37294006 CGTGTATTCG
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 32 0.23
40 105 0.77
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:37297582 original size:47 final size:47
Alignment explanation
Indices: 37297471--37297844 Score: 644
Period size: 47 Copynumber: 8.0 Consensus size: 47
37297461 GAAATGATAG
*
37297471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-AGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37297517 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37297564 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-TGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37297610 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
37297657 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
37297704 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
37297751 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37297798 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37297845 CAAGCCGAGT
Statistics
Matches: 316, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
46 86 0.27
47 230 0.73
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:37299722 original size:47 final size:47
Alignment explanation
Indices: 37299615--37300046 Score: 695
Period size: 47 Copynumber: 9.1 Consensus size: 47
37299605 GAAATGATAG
*
37299615 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* **
37299664 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37299711 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37299758 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37299805 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
37299852 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37299899 T-AGGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGG-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * *
37299946 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTTTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
37299993 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
37300040 CAAGGCC
1 TAAGGCC
37300047 GAGTGGCCAA
Statistics
Matches: 365, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 3 0.01
47 324 0.89
48 3 0.01
49 35 0.10
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:37304913 original size:40 final size:40
Alignment explanation
Indices: 37304820--37305076 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
37304810 AAGCCAAGTA
* * *
37304820 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
37304858 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37304898 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37304938 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37304978 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37305018 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37305058 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37305077 TTATCATCCG
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 168 0.86
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37313174 original size:19 final size:19
Alignment explanation
Indices: 37313150--37313196 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
37313140 CAATTGTATT
37313150 TGGCTTACTAAGCTCTTTG
1 TGGCTTACTAAGCTCTTTG
37313169 TGGCTTACTAAGCTCTTTG
1 TGGCTTACTAAGCTCTTTG
*
37313188 TAGCTTACT
1 TGGCTTACT
37313197 GAGAGATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (19 bp):
TGGCTTACTAAGCTCTTTG
Found at i:37330327 original size:28 final size:28
Alignment explanation
Indices: 37330287--37330342 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37330277 CACATCCGAG
37330287 GTAAGTTTTCGAGTAATGGAACTTAGAT
1 GTAAGTTTTCGAGTAATGGAACTTAGAT
37330315 GTAAGTTTTCGAGTAATGGAACTTAGAT
1 GTAAGTTTTCGAGTAATGGAACTTAGAT
37330343 TATGATTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (28 bp):
GTAAGTTTTCGAGTAATGGAACTTAGAT
Found at i:37330610 original size:39 final size:40
Alignment explanation
Indices: 37330512--37330659 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 40
37330502 TATTCGGATG
* *
37330512 ATAACCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
**
37330552 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
* * *
37330592 AT-ACCGGGCTAAGTCCCGAAGGTATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
*
37330631 ATAACCGGGCTGAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
37330660 AGCTAGTGGC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 35 0.36
40 62 0.64
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
Found at i:37330681 original size:79 final size:79
Alignment explanation
Indices: 37330515--37330682 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
37330505 TCGGATGATA
* * * **
37330515 ACCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATGTCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTT
* * *
37330580 GTGCGAGTTATTAT
66 GAGCGAGTGACTAT
* * *
37330594 ACCGGGCTAAGTCCCGAAGGTATTTGTGCAAGTTACTATAACCGGGCTGAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTT
* *
37330659 GAGCTAGTGGCTAT
66 GAGCGAGTGACTAT
37330673 ATCC-GGCTAA
1 A-CCGGGCTAA
37330683 ACTCCGAAGG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
79 73 0.97
80 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GAGCGAGTGACTAT
Found at i:37334618 original size:50 final size:50
Alignment explanation
Indices: 37334519--37335055 Score: 772
Period size: 48 Copynumber: 10.9 Consensus size: 50
37334509 TTCATGCATA
* ** **
37334519 AGATATGTATATATGGTAAATACGAATGGCTAATACGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
* *
37334571 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
37334621 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
37334669 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
37334717 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
37334765 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
37334815 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
37334865 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
37334913 AGATATGCATATGTGGTAAAGCCAAATGG-TCAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATATG
* *
37334965 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
37335013 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
37335056 GTAGGCGATG
Statistics
Matches: 448, Mismatches: 27, Indels: 22
0.90 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 224 0.50
49 9 0.02
50 140 0.31
51 3 0.01
52 70 0.16
53 1 0.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:37334906 original size:148 final size:146
Alignment explanation
Indices: 37334519--37335058 Score: 789
Period size: 148 Copynumber: 3.6 Consensus size: 146
37334509 TTCATGCATA
* ** **
37334519 AGATATGTATATATGGTAAATACGAATGGCTAATACGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAAT--GTGA-A-ATATATATGAGATATGTATATG
* * *
37334584 TGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATG
62 TGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
37334649 GCTAATGTG-AA-ATATGTATG
125 GCTAATGTGAAATATATATATG
* *
37334669 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
37334734 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
37334799 GCGAAATATATATATG
131 GTGAAATATATATATG
* *
37334815 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTG
* *
37334880 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCAAATGG-TC
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-
37334944 AATGTGAAATATATATATATG
128 AATGTG-AA-ATATATATATG
* *
37334965 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
*
37335030 AAAGCCGAATGGCTAGTGTGAAATATGTA
66 AAAGCCGAATGGCTAATGTGAAATATGTA
37335059 GGCGATGTGT
Statistics
Matches: 359, Mismatches: 24, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
144 44 0.12
145 4 0.01
146 85 0.24
147 4 0.01
148 143 0.40
149 4 0.01
150 75 0.21
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (146 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATATATATG
Found at i:37335255 original size:37 final size:37
Alignment explanation
Indices: 37335205--37335350 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
37335195 GGAAATATAT
*
37335205 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37335242 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37335279 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
37335316 TCCGGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37335351 CATCTGAGCT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37339919 original size:15 final size:15
Alignment explanation
Indices: 37339899--37339929 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37339889 ATTCTCATAT
37339899 ACCATAATATCGTTC
1 ACCATAATATCGTTC
*
37339914 ACCATAATGTCGTTC
1 ACCATAATATCGTTC
37339929 A
1 A
37339930 TACACTCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (15 bp):
ACCATAATATCGTTC
Found at i:37341164 original size:37 final size:37
Alignment explanation
Indices: 37341056--37341164 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
37341046 GGAAATATAT
*
37341056 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
37341093 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
37341130 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37341165 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37343198 original size:13 final size:13
Alignment explanation
Indices: 37343163--37343199 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
37343153 ATATTGTATA
37343163 ATTTTCTCTTTAG
1 ATTTTCTCTTTAG
**
37343176 ATTTAGTCTTTAG
1 ATTTTCTCTTTAG
37343189 ATTTTCTCTTT
1 ATTTTCTCTTT
37343200 TCTTAGGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.16, C:0.14, G:0.08, T:0.62
Consensus pattern (13 bp):
ATTTTCTCTTTAG
Found at i:37364721 original size:53 final size:53
Alignment explanation
Indices: 37364540--37364747 Score: 150
Period size: 55 Copynumber: 3.8 Consensus size: 53
37364530 ATTAGGGTTT
* * * *
37364540 AAAGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACA-AAGGC
1 AAAGATACCACGTAAGACCATGCCAAGACATGGCAATGCTAAG--TT-CATAAGGC
* * * ** * * * * *
37364595 -AAGAAAATCATGTAAGAATATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAAG-ATACCACGTAAGACCATGCCAAGACATGGCAATGCT-AAGTTC-ATAAGGC
* * * * *
37364650 AAAGATCCCATGTAAGACCTTGCCAAGGCATGGCAATGCTAAGTTCATAATGC
1 AAAGATACCACGTAAGACCATGCCAAGACATGGCAATGCTAAGTTCATAAGGC
* * *
37364703 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAAGATACCACGTAAGACCATGCCAAGACATGGCAATGCTAAGTT
37364748 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 12
0.74 0.19 0.08
Matches are distributed among these distances:
53 45 0.38
54 9 0.08
55 59 0.50
56 5 0.04
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21
Consensus pattern (53 bp):
AAAGATACCACGTAAGACCATGCCAAGACATGGCAATGCTAAGTTCATAAGGC
Found at i:37366266 original size:26 final size:26
Alignment explanation
Indices: 37366222--37366319 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
37366212 CCTCTTTAAT
37366222 AACTAGGGCA-AAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
* **
37366247 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
37366273 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
*
37366299 AACTGGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
37366320 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 9 0.14
26 56 0.86
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCAATA
Found at i:37366299 original size:52 final size:51
Alignment explanation
Indices: 37366222--37366319 Score: 187
Period size: 52 Copynumber: 1.9 Consensus size: 51
37366212 CCTCTTTAAT
37366222 AACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
37366273 AACTAGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTAGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
37366320 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 10 0.22
52 36 0.78
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (51 bp):
AACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:37366394 original size:20 final size:20
Alignment explanation
Indices: 37366369--37366435 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
37366359 TTATGAATTC
*
37366369 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
37366389 ATCATGTGCATATCATACCT
1 ATCATGTGCATATCATACAT
*
37366409 ATCATGTGCACATCATATCA-
1 ATCATGTGCATATCATA-CAT
37366429 ATCATGT
1 ATCATGT
37366436 ATCAAATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 41 0.98
21 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37366483 original size:25 final size:25
Alignment explanation
Indices: 37366455--37366502 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37366445 ATAATTAAAC
* * *
37366455 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
37366480 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
37366503 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:37372129 original size:20 final size:20
Alignment explanation
Indices: 37372104--37372144 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37372094 ACCACCTAAT
*
37372104 TTTCATTTTATGTGATTAAG
1 TTTCATTTTATGCGATTAAG
37372124 TTTCATTTTATGCGATTAAG
1 TTTCATTTTATGCGATTAAG
37372144 T
1 T
37372145 CCTTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (20 bp):
TTTCATTTTATGCGATTAAG
Found at i:37382095 original size:14 final size:14
Alignment explanation
Indices: 37382076--37382120 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
37382066 ATGCCATGAA
37382076 GTGAGATTATGTAT
1 GTGAGATTATGTAT
37382090 GTGAGATTATGTAT
1 GTGAGATTATGTAT
37382104 GTGAGTGATTATGTAT
1 GTGA--GATTATGTAT
37382120 G
1 G
37382121 CCGTGTGTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 18 0.62
16 11 0.38
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (14 bp):
GTGAGATTATGTAT
Found at i:37383973 original size:29 final size:30
Alignment explanation
Indices: 37383927--37383984 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
37383917 CCTAGTAGCC
* *
37383927 CACATTTTTCAACTTTTCACACATTAAATCA
1 CACATTTTTCAACATTTCACA-AATAAATCA
37383958 CACA-TTTTC-ACATTTCACAAATAAATC
1 CACATTTTTCAACATTTCACAAATAAATC
37383985 CCTATTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 9 0.36
30 5 0.20
31 4 0.16
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.36
Consensus pattern (30 bp):
CACATTTTTCAACATTTCACAAATAAATCA
Found at i:38443391 original size:46 final size:46
Alignment explanation
Indices: 38443341--38443515 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
38443331 TGGTTGAGCA
38443341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
38443387 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAAT-G
* * *
38443431 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
38443479 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38443516 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 2 0.02
46 90 0.82
48 2 0.02
49 6 0.05
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:38443494 original size:92 final size:92
Alignment explanation
Indices: 38443337--38443507 Score: 297
Period size: 92 Copynumber: 1.9 Consensus size: 92
38443327 AGGATGGTTG
* *
38443337 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
38443402 TTGAGTCCGAGTTCGAGAGATGTAACT
66 TTGAGTCCGAGTTCGAGAGATGTAACT
* * *
38443429 AGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
38443494 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
38443508 AGTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (92 bp):
AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACT
Found at i:38446444 original size:15 final size:15
Alignment explanation
Indices: 38446409--38446479 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
38446399 GTATCTTGGG
*
38446409 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
**
38446424 CCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
38446439 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
38446454 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
38446469 TTTATTTATTC
1 TTTCTTTATTC
38446480 GATTTTCTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
14 2 0.05
15 38 0.90
16 2 0.05
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.55
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:38446621 original size:14 final size:16
Alignment explanation
Indices: 38446585--38446621 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
38446575 ACTTCTAATT
*
38446585 TGATCTTAGTATGTGG
1 TGATTTTAGTATGTGG
38446601 TGATTTTAGTAT-TGG
1 TGATTTTAGTATGTGG
38446616 -GATTTT
1 TGATTTT
38446622 TTCTAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 3 0.15
16 11 0.55
ACGTcount: A:0.19, C:0.03, G:0.27, T:0.51
Consensus pattern (16 bp):
TGATTTTAGTATGTGG
Found at i:38448896 original size:46 final size:45
Alignment explanation
Indices: 38448846--38449021 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
38448836 TGGTTGAGCA
38448846 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
38448892 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
38448939 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
38448985 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38449022 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:38449002 original size:93 final size:93
Alignment explanation
Indices: 38448843--38449013 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
38448833 GGATGGTTGA
* *
38448843 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38448908 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
38448936 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38449001 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
38449014 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:38451981 original size:14 final size:14
Alignment explanation
Indices: 38451932--38452012 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
38451922 ATCGTATCTT
*
38451932 GGGTTTCTTTATCC
1 GGGTTTCTTTATTC
* **
38451946 TGGACTCTTTATTC
1 GGGTTTCTTTATTC
*
38451960 TGGATTTCTTTATTC
1 -GGGTTTCTTTATTC
* *
38451975 GGGTTTCTCTATCTT
1 GGGTTTCTTTAT-TC
*
38451990 GGATTTCTTTATTC
1 GGGTTTCTTTATTC
*
38452004 GGTTTTCTT
1 GGGTTTCTT
38452013 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
14 29 0.58
15 21 0.42
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.56
Consensus pattern (14 bp):
GGGTTTCTTTATTC
Found at i:38454433 original size:46 final size:46
Alignment explanation
Indices: 38454383--38454556 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
38454373 TGGTTGAGCA
*
38454383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
38454429 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
38454476 TCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
38454521 CCCG-GCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38454557 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
44 18 0.17
45 22 0.21
46 36 0.35
47 28 0.27
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:38463625 original size:22 final size:21
Alignment explanation
Indices: 38463594--38463634 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
38463584 CTCTTAACAC
*
38463594 AGGGGAACACGCCCATGTGGG
1 AGGGGAACACACCCATGTGGG
*
38463615 AGGGGCAACACACCCGTGTG
1 AGGGG-AACACACCCATGTG
38463635 ACAATTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.24, C:0.27, G:0.39, T:0.10
Consensus pattern (21 bp):
AGGGGAACACACCCATGTGGG
Found at i:38465102 original size:15 final size:15
Alignment explanation
Indices: 38465082--38465131 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
38465072 TAATCGAATA
38465082 GCATTGCATTTGCTC
1 GCATTGCATTTGCTC
38465097 GCATTGCATTTGCTC
1 GCATTGCATTTGCTC
* *
38465112 ACATTGCAATTTACTC
1 GCATTGC-ATTTGCTC
38465128 GCAT
1 GCAT
38465132 AACATGTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 21 0.68
16 10 0.32
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (15 bp):
GCATTGCATTTGCTC
Found at i:38466754 original size:43 final size:42
Alignment explanation
Indices: 38466695--38466790 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
38466685 TCCTAGGCGT
* * *
38466695 GGTCTTACATGTAATCAAACATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGAAATCAAACA-CGATACCGA-TATCCCAGACAG
* * * *
38466738 GGTCTTACACGAAATCAGATACGATACCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAAACACGATACCGATATCCCAGACAG
38466780 GGTCTTACACG
1 GGTCTTACACG
38466791 TAAAATAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACGATACCGATATCCCAGACAG
Found at i:38477032 original size:53 final size:55
Alignment explanation
Indices: 38476964--38477104 Score: 169
Period size: 53 Copynumber: 2.6 Consensus size: 55
38476954 TTCCTTTTTA
*
38476964 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* ** * *
38477017 AACTCACCATTGCCATCCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
** * * *
38477072 AGTTTATCAATGCCATGTCTTGACATTGTCTTA
1 AACTTACCATTGCCATGTCTTGACATGGTCTTA
38477105 AATGATTTCA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 46 0.65
54 1 0.01
55 24 0.34
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
Found at i:38480793 original size:54 final size:54
Alignment explanation
Indices: 38480729--38480889 Score: 202
Period size: 54 Copynumber: 3.0 Consensus size: 54
38480719 AGAATTACTA
* *
38480729 AAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAAAATTATCG
1 AAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAAAATTACCG
**
38480783 AAATACCCCTGT-AGGATAGAATTA-TCGAAATACCCTTGTAGCATAGAAA-TACCG
1 AAATACCCCTGTAAGG-TAGAATTACT-GAAATACCCTTGTAGGGTA-AAATTACCG
* * * *
38480837 AAATACCCCTGTAGGGTAAAATTACTGAGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAAAATTACC
38480890 ATTTTGCCCC
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
53 7 0.08
54 78 0.86
55 6 0.07
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
AAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAAAATTACCG
Done.