Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 117 of 295
Found at i:40272472 original size:93 final size:93
Alignment explanation
Indices: 40272313--40272484 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
40272303 AGGATATTTG
* *
40272313 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
40272378 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
40272406 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
40272470 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
40272485 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 71 0.95
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:40275476 original size:29 final size:29
Alignment explanation
Indices: 40275360--40275476 Score: 166
Period size: 29 Copynumber: 4.1 Consensus size: 29
40275350 ATACATGCAA
*
40275360 ATGGCCCACTAGGCCC-AATCTA-ATTCAT
1 ATGGCCCATTAGGCCCAAATC-ACATTCAT
* *
40275388 ATAGCCCATTAGGCCCAAATCACATTCGT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
* *
40275417 ACGGCCCATTAGGCCCAAAACACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
40275446 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
40275475 AT
1 AT
40275477 ACATGCTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 15 0.19
29 63 0.81
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.23
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAT
Found at i:40275729 original size:16 final size:16
Alignment explanation
Indices: 40275687--40275721 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
40275677 GTAGCCAAAC
40275687 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
40275703 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
40275719 TTT
1 TTT
40275722 TGGCTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.20, G:0.17, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:40283401 original size:43 final size:43
Alignment explanation
Indices: 40283337--40283418 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
40283327 GGGATATGGA
* * *
40283337 ATTGATATGAGACTTTGTGTAAGACCATAGCTGGAATATTGCC
1 ATTGATACGAGACTTTATGTAAGACAATAGCTGGAATATTGCC
* *
40283380 ATTGATACGAGA-TTTCATGTAAGACAATATCTGGGATAT
1 ATTGATACGAGACTTT-ATGTAAGACAATAGCTGGAATAT
40283419 GGCATTGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 3 0.09
43 30 0.91
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (43 bp):
ATTGATACGAGACTTTATGTAAGACAATAGCTGGAATATTGCC
Found at i:40287759 original size:42 final size:43
Alignment explanation
Indices: 40287709--40287804 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 43
40287699 TAAGATTTAT
**
40287709 GTGTAAGACCATGTCT-GAGACATTGGCATCG-TATCTGAATT-C
1 GTGTAAGACCATGTCTAG-GACAGAGGCATCGATAT-TGAATTAC
*
40287751 GTGTAAGACCCTGTCTAGGACAGAGGCATCGATATTGAATTAC
1 GTGTAAGACCATGTCTAGGACAGAGGCATCGATATTGAATTAC
*
40287794 ATGTAAGACCA
1 GTGTAAGACCA
40287805 CGTCCGGGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 32 0.70
43 14 0.30
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACAGAGGCATCGATATTGAATTAC
Found at i:40295297 original size:40 final size:40
Alignment explanation
Indices: 40295237--40295420 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
40295227 TATTCGAATG
* *
40295237 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACC
* * * **
40295277 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTTCC
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACC
* * * *
40295317 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACC
40295357 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACC
* *
40295397 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
40295421 CTTGTGCCAG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
40 120 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACC
Found at i:40295370 original size:80 final size:80
Alignment explanation
Indices: 40295237--40295420 Score: 262
Period size: 80 Copynumber: 2.3 Consensus size: 80
40295227 TATTCGAATG
* * *
40295237 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* **
40295301 ATTTGTGCGAGTTTCC
65 ATTTATGCGAGTGACC
* *
40295317 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
40295382 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
*
40295397 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
40295421 CTTGTGCCAG
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
79 1 0.01
80 92 0.99
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:40303476 original size:40 final size:40
Alignment explanation
Indices: 40303393--40303576 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
40303383 TATTCGAATG
* * * * *
40303393 ATATTCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
40303433 ATATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
40303473 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
40303513 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
40303553 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
40303577 CTTGTGCCAG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:40312197 original size:29 final size:29
Alignment explanation
Indices: 40312138--40312254 Score: 191
Period size: 29 Copynumber: 4.1 Consensus size: 29
40312128 ATACATGCAA
* *
40312138 ATGGCCCACTAGGCCC-AATCTCATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
* *
40312166 ATGGCCCATTAGGTCCAAATCACATTCGT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
40312195 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
40312224 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
40312253 AT
1 AT
40312255 ACATGCTTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 14 0.17
29 68 0.83
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAT
Found at i:40318817 original size:46 final size:46
Alignment explanation
Indices: 40318767--40318942 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
40318757 TGGTTGAGCA
*
40318767 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
40318813 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
40318858 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
40318906 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40318943 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:40318923 original size:93 final size:93
Alignment explanation
Indices: 40318764--40318935 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
40318754 GGATGGTTGA
* *
40318764 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
40318829 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
40318857 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
40318921 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
40318936 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:40322628 original size:43 final size:43
Alignment explanation
Indices: 40322537--40322651 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
40322527 ACTAAGATAA
* *
40322537 CATGTAAGACCATATTTGGGATATGGCATTGATATGAGACTTT
1 CATGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTT
* * *
40322580 -GTGTAAGACCATAGCTGGAATATTGGCATTGATACGAGA-TTT
1 CATGTAAGACCATATCTGGGATA-TGGCATTGATACGAGACTTT
40322622 CATGTAAGACCATATCTGGGATATGGCATT
1 CATGTAAGACCATATCTGGGATATGGCATT
40322652 CATATGGTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTT
Found at i:40324291 original size:47 final size:46
Alignment explanation
Indices: 40324237--40324365 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 46
40324227 GAAATTTGAG
**
40324237 ATCCGAACTCATTGAGTTGCGTTCCGAGTTCACTTATGGATG-CAAGC
1 ATCCGAACTTGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGTCAA-C
* *
40324284 ATCCGAACTTGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAAC
1 ATCCGAACTTGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAAC
* * *
40324330 ACCCGAGCTTGTGGAGTTGCGTTCCGAGTTCATTAT
1 ATCCGAACTTGTTGAGTTGCGTTCCGAGTTCATTAT
40324366 TTGTGAAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 42 0.58
47 31 0.42
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (46 bp):
ATCCGAACTTGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAAC
Found at i:40327445 original size:29 final size:29
Alignment explanation
Indices: 40327413--40327474 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
40327403 TTTCTTTTAT
* * *
40327413 TATACATTCATTTTAAT-TATTATTACATA
1 TATACATTAAATTTAATATA-TATAACATA
40327442 TATACATTAAATTTAATATATATAACATA
1 TATACATTAAATTTAATATATATAACATA
40327471 TATA
1 TATA
40327475 TTTATTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (29 bp):
TATACATTAAATTTAATATATATAACATA
Found at i:40334285 original size:35 final size:35
Alignment explanation
Indices: 40334239--40334309 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
40334229 ATCACTAGAG
* **
40334239 TAGAACTCTTGTTCCACTTCATTATCTGATTCATT
1 TAGAACGCTTGTTCCACTTCATTATCAAATTCATT
*
40334274 TAGAACGCTTGTTCCACTTCCTTATCAAATTCATT
1 TAGAACGCTTGTTCCACTTCATTATCAAATTCATT
40334309 T
1 T
40334310 GCCATCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (35 bp):
TAGAACGCTTGTTCCACTTCATTATCAAATTCATT
Found at i:40334769 original size:49 final size:49
Alignment explanation
Indices: 40334697--40334790 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
40334687 TGCTATGCAA
40334697 TACTAAACTTGCTCTTCCACTATCTACACTCTTAACATTATTTATACAT
1 TACTAAACTTGCTCTTCCACTATCTACACTCTTAACATTATTTATACAT
*
40334746 TACTAAACTTAG-TCTTCCACTATCTACACTCTTATCATTATTTAT
1 TACTAAACTT-GCTCTTCCACTATCTACACTCTTAACATTATTTAT
40334791 CCCTTCTAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 42 0.98
50 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.43
Consensus pattern (49 bp):
TACTAAACTTGCTCTTCCACTATCTACACTCTTAACATTATTTATACAT
Found at i:40350239 original size:27 final size:27
Alignment explanation
Indices: 40350209--40350522 Score: 282
Period size: 27 Copynumber: 11.7 Consensus size: 27
40350199 TAATAAAGAG
*
40350209 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
40350236 AAATTATCGATATACCCCCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
40350263 AAATTATCAAAATACCCTCGATTATG--
1 AAATTATCGAAATACCCTCGATT-TGTA
*
40350289 AAATTA-CTGAAATACCC-CTGATTTGTG
1 AAATTATC-GAAATACCCTC-GATTTGTA
* *
40350316 AAATTA-C-AAAAACTCCCTCAATTTGTA
1 AAATTATCGAAATA--CCCTCGATTTGTA
* *
40350343 AAATTATTGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * **
40350370 AAATTACCGAAACACCCTTAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
40350397 AAATTACCGAAATACCTTCAATTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
40350424 AAATTATCGAAATTCCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * * *
40350451 AAACTACCAAAACACCCCCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
40350478 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
*
40350505 AAATTATCGAAGTACCCT
1 AAATTATCGAAATACCCT
40350523 TGTAATGTAA
Statistics
Matches: 236, Mismatches: 40, Indels: 22
0.79 0.13 0.07
Matches are distributed among these distances:
25 8 0.03
26 19 0.08
27 202 0.86
28 3 0.01
29 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:40350523 original size:27 final size:26
Alignment explanation
Indices: 40350474--40350562 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 26
40350464 ACCCCCGATT
40350474 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCG-AATACCCTTGTAG
*
40350501 TGTAAAATTATCGAAGTACCCTTGTAA
1 TGTAAAATTATCGAA-TACCCTTGTAG
* * *
40350528 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTATCGA-ATACCCTTGTAG
*
40350555 GGTAAAAT
1 TGTAAAAT
40350563 GACTCTTTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.94
28 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (26 bp):
TGTAAAATTATCGAATACCCTTGTAG
Found at i:40351040 original size:11 final size:11
Alignment explanation
Indices: 40351024--40351048 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
40351014 TTGTATGTAT
40351024 GATATTATTGC
1 GATATTATTGC
40351035 GATATTATTGC
1 GATATTATTGC
40351046 GAT
1 GAT
40351049 TTGAGCTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (11 bp):
GATATTATTGC
Found at i:40353455 original size:28 final size:28
Alignment explanation
Indices: 40353402--40353472 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
40353392 GTTGGGCTTG
* *
40353402 ATGGGCCATATGAATGTAATTGGGCCTA
1 ATGGGCCATATGAACGTAATTAGGCCTA
*
40353430 ATGGGCCATGTGAACG-ATATTAGGCCTAA
1 ATGGGCCATATGAACGTA-ATTAGGCCT-A
* *
40353459 AGGGGCCAAATGAA
1 ATGGGCCATATGAA
40353473 TAAGTGTGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 1 0.03
28 22 0.63
29 12 0.34
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (28 bp):
ATGGGCCATATGAACGTAATTAGGCCTA
Found at i:40353879 original size:27 final size:27
Alignment explanation
Indices: 40353771--40354054 Score: 312
Period size: 27 Copynumber: 10.7 Consensus size: 27
40353761 ATAATAAAGA
*
40353771 AAAATTATTGAAATACCCTCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* * *
40353798 ---ATTACCGAAATACCCCCGATTCGT
1 AAAATTATCGAAATACCCTCGATTTGT
**
40353822 -AAATTATCGAAATACCCTTTA-TTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* *
40353847 GAAATTA-CTAAAATACCCTCGATTTGT
1 AAAATTATC-GAAATACCCTCGATTTGT
*
40353874 AAAATTATCGAAATACCCCCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* * *
40353901 GAAATTATCGAAACACCCTCAATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* *
40353928 AAAATTA-CTGAAACACCCTTGATTTGT
1 AAAATTATC-GAAATACCCTCGATTTGT
* *
40353955 AAAATTATCAAAACACCCTCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
40353982 AAAATTATCGAAATACCCTCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* * * * *
40354009 AGAACTACCGAAACACCCCCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
40354036 AAAATTATCGAAATACCCT
1 AAAATTATCGAAATACCCT
40354055 TATAGTGTAA
Statistics
Matches: 213, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
24 20 0.09
25 4 0.02
26 32 0.15
27 155 0.73
28 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGATTTGT
Found at i:40353952 original size:81 final size:80
Alignment explanation
Indices: 40353771--40354053 Score: 349
Period size: 81 Copynumber: 3.6 Consensus size: 80
40353761 ATAATAAAGA
* * * *
40353771 AAAATTATTGAAATACCCTCGATTTGT---ATTACCGAAATACCCCCGATTCGTAAATTATCGAA
1 AAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGTAAATTATCGAA
**
40353833 ATACCCTTTA-TTGT
66 ATACCCTCAATTTGT
* * *
40353847 GAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGTGAAATTATCGA
1 AAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGT-AAATTATCGA
*
40353912 AACACCCTCAATTTGT
65 AATACCCTCAATTTGT
* * * *
40353928 AAAATTACTGAAACACCCTTGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTATCGA
1 AAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGT-AAATTATCGA
*
40353993 AATACCCTCGATTTGT
65 AATACCCTCAATTTGT
* * * *
40354009 AGAACTACCGAAACACCCCCGATTTGTAAAATTATCGAAATACCC
1 AAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCC
40354054 TTATAGTGTA
Statistics
Matches: 177, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
76 24 0.14
79 22 0.12
80 18 0.10
81 113 0.64
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (80 bp):
AAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGTAAATTATCGAA
ATACCCTCAATTTGT
Found at i:40354078 original size:27 final size:27
Alignment explanation
Indices: 40354033--40354095 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
40354023 ACCCCCGATT
* * *
40354033 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATGACCGAAATACCCCTATAG
* *
40354060 TGTAAAATGACCGATATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCCTATAG
*
40354087 GGTAAAATG
1 TGTAAAATG
40354096 CCTCTTTTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTATAG
Found at i:40354668 original size:27 final size:27
Alignment explanation
Indices: 40354622--40354709 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
40354612 TAAGGCTAAG
* *
40354622 ATGGGCTAGG-CCCAATTGAT-TCTGTT
1 ATGGGCTTGGACCCAAATGATAT-TGTT
40354648 ATGGGCTTGGACCCAAATGATATTGTT
1 ATGGGCTTGGACCCAAATGATATTGTT
*
40354675 ATGGGCTTGGACCCAAATGATATTGTA
1 ATGGGCTTGGACCCAAATGATATTGTT
*
40354702 ACGGGCTT
1 ATGGGCTT
40354710 TCGCCCATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 9 0.16
27 46 0.82
28 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (27 bp):
ATGGGCTTGGACCCAAATGATATTGTT
Found at i:40357363 original size:27 final size:27
Alignment explanation
Indices: 40357325--40357638 Score: 319
Period size: 27 Copynumber: 11.7 Consensus size: 27
40357315 TAATAAAGAG
* *
40357325 AAATTACTGAAATACCTTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
40357352 AAATTACCGAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-AATTTGTA
** * * *
40357379 AAATTATTGAAATACCTTCGA-TTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
40357405 AAATTACTGAAATACCCTCGATTTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
40357432 AAATTACTGAAACACCCTCAGTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
40357459 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
40357486 AAATTACCGAAACACCTTTAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
40357513 AAATTACCGAAATACCCTCAGTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
**
40357540 AAATTACCGAAATACCCTCGTTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
40357567 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* ** *
40357594 AAATTATCGAAATACCCT-TGTAGTGTA
1 AAATTACCGAAATACCCTCAAT-TTGTA
*
40357621 AAATTACCGAAATTCCCT
1 AAATTACCGAAATACCCT
40357639 TGTAGTGTAA
Statistics
Matches: 245, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 25 0.10
27 219 0.89
28 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAATTTGTA
Found at i:40357518 original size:81 final size:81
Alignment explanation
Indices: 40357325--40357638 Score: 364
Period size: 81 Copynumber: 3.9 Consensus size: 81
40357315 TAATAAAGAG
* * * * *
40357325 AAATTACTGAAATACCTTCAATTTGTAAAATTACCGAAATACCC-CTAATTTGTAAAATTATTGA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATACCCTC-AGTTTGTAAAATTATCGA
* *
40357389 AATACCTTCGA-TTGTG
65 AATACCCTCGATTTGTA
* * * * * *
40357405 AAATTACTGAAATACCCTCGATTTGTGAAATTACTGAAACACCCTCAGTTTGTAAAATTATCGAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATCGAA
*
40357470 ACACCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * *
40357486 AAATTACCGAAACACCTTTAATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATCGAA
*
40357551 ATACCCTCGTTTTGTA
66 ATACCCTCGATTTGTA
* * * * * *
40357567 AAATTACCAAAACACCCTCGATTTGTAAAATTATCGAAATACCCT-TGTAGTGTAAAATTACCGA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATACCCTCAGT-TTGTAAAATTATCGA
*
40357631 AATTCCCT
65 AATACCCT
40357639 TGTAGTGTAA
Statistics
Matches: 202, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
80 66 0.33
81 136 0.67
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (81 bp):
AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATCGAA
ATACCCTCGATTTGTA
Found at i:40359310 original size:42 final size:42
Alignment explanation
Indices: 40359259--40359517 Score: 219
Period size: 42 Copynumber: 6.2 Consensus size: 42
40359249 CGGTTTAGTC
40359259 GATG-ACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCAT
1 GATGCACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCAT
* *
40359300 GATGCACTTATGTGCCAGTATATTCGCTTCATTTTAGCTAAT
1 GATGCACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCAT
* * * * * **
40359342 GATGCACTTATGTGCTAGTATATAT-GATTCAATTCATCTGGT
1 GATGCACTTATGTGCCAGTATAT-TCGCTTCAGTTTAGCTCAT
* * * ** * *
40359384 GATACACTTATGTGCTAGTATAATCGCTTTGGTTCATC-CAAT
1 GATGCACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTC-AT
* *
40359426 GATGCACTTATGTGCCAGTATAATT-G-TCTCAGCTT-GTCTAAT
1 GATGCACTTATGTGCCAGTAT-ATTCGCT-TCAGTTTAG-CTCAT
* *
40359468 GATGCACTTATGTGCTAGTATATTTC-CTTCAGTTTATC-CAAT
1 GATGCACTTATGTGCCAGTATA-TTCGCTTCAGTTTAGCTC-AT
40359510 GATGCACT
1 GATGCACT
40359518 GTGGTGCTAG
Statistics
Matches: 175, Mismatches: 30, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
41 7 0.04
42 164 0.94
43 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (42 bp):
GATGCACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCAT
Found at i:40359362 original size:84 final size:82
Alignment explanation
Indices: 40359259--40359517 Score: 272
Period size: 84 Copynumber: 3.1 Consensus size: 82
40359249 CGGTTTAGTC
* *
40359259 GATG-ACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCATGATGCACTTATGTGCCAGTATAT
1 GATGCACTTATGTGCCAGTATATT-G-TTCAGTTTAGCTAATGATGCACTTATGTGCTAGTATAT
* * *
40359323 TCGCTTCATTTTAGCTAAT
64 TCGCTTCAGTTTATCCAAT
* * * * ** * *
40359342 GATGCACTTATGTGCTAGTATATATGATTCAATTCATCTGGTGATACACTTATGTGCTAGTATAA
1 GATGCACTTATGTGCCAGTATAT-TG-TTCAGTTTAGCTAATGATGCACTTATGTGCTAGTATAT
** *
40359407 TCGCTTTGGTTCATCCAAT
64 TCGCTTCAGTTTATCCAAT
*
40359426 GATGCACTTATGTGCCAGTATAATTGTCTCAGCTT-GTCTAATGATGCACTTATGTGCTAGTATA
1 GATGCACTTATGTGCCAGTAT-ATTGT-TCAGTTTAG-CTAATGATGCACTTATGTGCTAGTATA
40359490 TTTC-CTTCAGTTTATCCAAT
63 -TTCGCTTCAGTTTATCCAAT
40359510 GATGCACT
1 GATGCACT
40359518 GTGGTGCTAG
Statistics
Matches: 142, Mismatches: 28, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
83 5 0.04
84 132 0.93
85 5 0.04
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (82 bp):
GATGCACTTATGTGCCAGTATATTGTTCAGTTTAGCTAATGATGCACTTATGTGCTAGTATATTC
GCTTCAGTTTATCCAAT
Found at i:40359488 original size:126 final size:126
Alignment explanation
Indices: 40359263--40359490 Score: 320
Period size: 126 Copynumber: 1.8 Consensus size: 126
40359253 TTAGTCGATG
* *
40359263 ACTTATGTGCCAGTATATTCGCTTCAGTTTAGCTCATGATGCACTTATGTGCCAGTATATTCGCT
1 ACTTATGTGCCAGTATAATCGCTTCAGTTCAGCTCATGATGCACTTATGTGCCAGTATATTCGCT
**
40359328 TCATTTTAGCTAATGATGCACTTATGTGCTAGTATATATGATTCAATTCATCTGGTGATAC
66 TCAGCTTAGCTAATGATGCACTTATGTGCTAGTATATATGATTCAATTCATCTGGTGATAC
* ** *
40359389 ACTTATGTGCTAGTATAATCGCTTTGGTTCATC-CAATGATGCACTTATGTGCCAGTATAATT-G
1 ACTTATGTGCCAGTATAATCGCTTCAGTTCAGCTC-ATGATGCACTTATGTGCCAGTAT-ATTCG
40359452 -TCTCAGCTT-GTCTAATGATGCACTTATGTGCTAGTATAT
64 CT-TCAGCTTAG-CTAATGATGCACTTATGTGCTAGTATAT
40359491 TTCCTTCAGT
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
125 3 0.03
126 84 0.93
127 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (126 bp):
ACTTATGTGCCAGTATAATCGCTTCAGTTCAGCTCATGATGCACTTATGTGCCAGTATATTCGCT
TCAGCTTAGCTAATGATGCACTTATGTGCTAGTATATATGATTCAATTCATCTGGTGATAC
Found at i:40359525 original size:126 final size:126
Alignment explanation
Indices: 40359298--40359527 Score: 288
Period size: 126 Copynumber: 1.8 Consensus size: 126
40359288 AGTTTAGCTC
**
40359298 ATGATGCACTTATGTGCCAGTATATTCGCTTCATTTTAGCTAATGATGCACTTATGTGCTAGTAT
1 ATGATGCACTTATGTGCCAGTATATTCGCTTCAGCTTAGCTAATGATGCACTTATGTGCTAGTAT
* *** *
40359363 ATATGATTCAATTCATCTGGTGATACACTTATGTGCTAGTATAATCGCTTTGGTTCATCCA
66 ATATCATTCAATTCATCCAATGATACACTTAGGTGCTAGTATAATCGCTTTGGTTCATCCA
40359424 ATGATGCACTTATGTGCCAGTATAATT-G-TCTCAGCTT-GTCTAATGATGCACTTATGTGCTAG
1 ATGATGCACTTATGTGCCAGTAT-ATTCGCT-TCAGCTTAG-CTAATGATGCACTTATGTGCTAG
* * * * *
40359486 TATATTTCCTTCAGTTTATCCAATGATGCACTGT-GGTGCTAG
63 TATATATCATTCAATTCATCCAATGATACACT-TAGGTGCTAG
40359528 ATTGGGGTGT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
125 2 0.02
126 82 0.93
127 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (126 bp):
ATGATGCACTTATGTGCCAGTATATTCGCTTCAGCTTAGCTAATGATGCACTTATGTGCTAGTAT
ATATCATTCAATTCATCCAATGATACACTTAGGTGCTAGTATAATCGCTTTGGTTCATCCA
Found at i:40366980 original size:47 final size:47
Alignment explanation
Indices: 40366926--40367119 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
40366916 TTAGGATTTT
** * *
40366926 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
40366973 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
40367020 ATGTGATAAATGTGAGCATGAATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
40367067 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
40367114 ATGTGA
1 ATGTGA
40367120 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:40367026 original size:22 final size:22
Alignment explanation
Indices: 40366955--40367028 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
40366945 GTATATATGA
40366955 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
40366977 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
40367002 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
40367024 GATAA
1 GATAA
40367029 ATGTGAGCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 13 0.33
23 9 0.23
24 9 0.23
25 8 0.21
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:40367152 original size:48 final size:48
Alignment explanation
Indices: 40367089--40367323 Score: 373
Period size: 48 Copynumber: 4.8 Consensus size: 48
40367079 TGAACATGCA
40367089 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
40367137 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
40367185 TATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
40367233 CATATGTGGTGAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
40367285 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
40367324 GGCGATGTGC
Statistics
Matches: 172, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 126 0.73
49 1 0.01
50 2 0.01
51 1 0.01
52 40 0.23
53 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:40367372 original size:148 final size:143
Alignment explanation
Indices: 40367090--40367363 Score: 349
Period size: 148 Copynumber: 1.9 Consensus size: 143
40367080 GAACATGCAT
*
40367090 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
* * * * *
40367155 ATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATTGTGAAATA
66 ATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGT-AAGCCGAACGACCAATGTGAAATA
40367220 TGTATGAGATATGC
130 TGTATGAGATATGC
*
40367234 ATATGTGGTGAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
* * * *
40367298 GCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATAT-T-GT-GGCCGAACGACCAATGT
61 GCCGAATGGCTAATGTGAAATATGTAGGAGATAT--GTATATGTGGTAAGCCGAACGACCAATGT
40367360 GAAA
124 GAAA
40367364 GGTGTGTATT
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
143 1 0.01
144 26 0.23
146 17 0.15
147 1 0.01
148 60 0.54
149 1 0.01
150 6 0.05
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (143 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAGCCGAACGACCAATGTGAAATAT
GTATGAGATATGC
Found at i:40367577 original size:37 final size:37
Alignment explanation
Indices: 40367469--40367577 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
40367459 GGAAATATAT
*
40367469 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
40367506 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
40367543 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
40367578 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:40369726 original size:26 final size:25
Alignment explanation
Indices: 40369697--40369748 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
40369687 ACTTTTGCTA
40369697 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
40369723 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACT-ATTTGTGAAATGTGAAAT
40369749 TTATGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 18 0.75
27 2 0.08
28 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:40373264 original size:37 final size:37
Alignment explanation
Indices: 40373211--40373330 Score: 145
Period size: 37 Copynumber: 3.2 Consensus size: 37
40373201 GAGTACGAAT
* * *
40373211 TAAGACTATAGCTGGGCTATGGCATCGTAATACCGTG
1 TAAGACCATAGATGGGCTATGGCATCGTAATACCATG
*
40373248 TAAGACCATAGATGGGCTATGGCATCATAATGA-CATG
1 TAAGACCATAGATGGGCTATGGCATCGTAAT-ACCATG
* * *
40373285 TAAGACCATA-ACTGGGCTATGGCATTGTGATCCCATG
1 TAAGACCATAGA-TGGGCTATGGCATCGTAATACCATG
40373322 TAAGACCAT
1 TAAGACCAT
40373331 GTCAGGGACA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
36 1 0.01
37 70 0.97
38 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (37 bp):
TAAGACCATAGATGGGCTATGGCATCGTAATACCATG
Found at i:40373363 original size:48 final size:48
Alignment explanation
Indices: 40373310--40373442 Score: 203
Period size: 48 Copynumber: 2.8 Consensus size: 48
40373300 GCTATGGCAT
*
40373310 TGTGATCCCATGTAAGACCATGTCAGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* *
40373358 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* ** *
40373406 TTTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
40373443 CGATATAAGA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:40373461 original size:42 final size:43
Alignment explanation
Indices: 40373368--40373462 Score: 104
Period size: 48 Copynumber: 2.1 Consensus size: 43
40373358 TGTGATCCCA
**
40373368 TGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCA-----CTCGATATAAGATTTCG
40373416 TGTAAGACCATGTCTGGGACATGGCA-TCGATATAAGACTTT-G
1 TGTAAGACCATGTCTGGGACATGGCACTCGATATAAGA-TTTCG
40373458 TGTAA
1 TGTAA
40373463 AGCCATAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
42 15 0.34
43 3 0.07
48 26 0.59
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATGGCACTCGATATAAGATTTCG
Found at i:40375401 original size:27 final size:27
Alignment explanation
Indices: 40375371--40375461 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
40375361 CCCAATATTA
* * *
40375371 GTAAAATTATCGAAATACCCTTGTAGT
1 GTAAAATGATCGAAATACCCCTGTAGG
* *
40375398 GTAAAATGATCGTAATGCCCCTGTAGG
1 GTAAAATGATCGAAATACCCCTGTAGG
* * *
40375425 GTAAAATGA-CCATAATACCCCTATATG
1 GTAAAATGATCGA-AATACCCCTGTAGG
*
40375452 GTAGAATGAT
1 GTAAAATGAT
40375462 GGTTATGCCC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (27 bp):
GTAAAATGATCGAAATACCCCTGTAGG
Found at i:40397041 original size:48 final size:48
Alignment explanation
Indices: 40396970--40397351 Score: 433
Period size: 48 Copynumber: 7.9 Consensus size: 48
40396960 GATACTAGGT
* * *
40396970 TATGAGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * * *
40397018 TATGAGAGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * * * *
40397066 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * * *
40397114 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * * * * *
40397162 CATGTGGGCTAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * *
40397210 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
* * * * *
40397258 CATGTA-TGCTAGTGTAAGACCATGTTTGGAACATGGAATTGGCATCAATA
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC--TA
* * *
40397308 TATGAGAGCCAGTGTAAGACCATGTCGGGGACATGGCATCGGCA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
40397352 ACTTACCCTT
Statistics
Matches: 270, Mismatches: 60, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
48 233 0.86
49 2 0.01
50 35 0.13
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCTA
Found at i:40397144 original size:96 final size:96
Alignment explanation
Indices: 40396975--40397350 Score: 592
Period size: 96 Copynumber: 3.9 Consensus size: 96
40396965 TAGGTTATGA
* * *
40396975 GAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGGCATTTATATGAGAGCTAGTGTAAAACCA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTATATGAGAGCTAGTGTAAGACCA
*
40397040 TGTCTGGGACATGGCATCGGCCTCGATATGT
66 TGTCTGGGACATGGCATCGGCCTCGACATGT
*
40397071 GAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTATATGAGAGCTAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTATATGAGAGCTAGTGTAAGACCA
*
40397136 TGTCTGGGACATAGCATCGGCCTCGACATGT
66 TGTCTGGGACATGGCATCGGCCTCGACATGT
* * *
40397167 GGGCTAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTATATGAGAGCTAGTGTAAGACCA
*
40397232 TGTCTGGGACATGGCATCGGCCTCAACATGT
66 TGTCTGGGACATGGCATCGGCCTCGACATGT
* * *
40397263 -ATGCTAGTGTAAGACCATGTTTGGAACATGGAATTGGCATCAATATATGAGAGCCAGTGTAAGA
1 GA-GCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCAT--TTATATGAGAGCTAGTGTAAGA
*
40397327 CCATGTCGGGGACATGGCATCGGC
63 CCATGTCTGGGACATGGCATCGGC
40397351 AACTTACCCT
Statistics
Matches: 258, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
96 215 0.83
98 43 0.17
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTATATGAGAGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCGGCCTCGACATGT
Found at i:40403096 original size:30 final size:30
Alignment explanation
Indices: 40403057--40403119 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
40403047 ACTTATTTTA
*
40403057 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTCAATTTTGTTATTATTTTAAAGGCAT
*
40403087 TTGTCAATTTTGTTATTATTTTAGAGGCAT
1 TTGTCAATTTTGTTATTATTTTAAAGGCAT
40403117 TTG
1 TTG
40403120 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.56
Consensus pattern (30 bp):
TTGTCAATTTTGTTATTATTTTAAAGGCAT
Found at i:40412237 original size:18 final size:19
Alignment explanation
Indices: 40412214--40412254 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
40412204 ATATGCACAG
40412214 TCAAATACAGAT-ACAGAT
1 TCAAATACAGATAACAGAT
*
40412232 TCAAATTCAGATAACAGAT
1 TCAAATACAGATAACAGAT
40412251 TCAA
1 TCAA
40412255 TTTTAGATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (19 bp):
TCAAATACAGATAACAGAT
Found at i:40412250 original size:19 final size:19
Alignment explanation
Indices: 40412214--40412269 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
40412204 ATATGCACAG
*
40412214 TCAAATACAGAT-ACAGAT
1 TCAAATTCAGATAACAGAT
40412232 TCAAATTCAGATAACAGAT
1 TCAAATTCAGATAACAGAT
* *
40412251 TCAATTTTAGATATACAGA
1 TCAAATTCAGATA-ACAGA
40412270 CTCCTACCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 11 0.33
19 17 0.52
20 5 0.15
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (19 bp):
TCAAATTCAGATAACAGAT
Found at i:40415982 original size:43 final size:42
Alignment explanation
Indices: 40415934--40416092 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
40415924 AGCTCGTGCA
* *
40415934 ATGCCAACGTCCCAGACGTGGTCTGACATGTAATAAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATAAAATA-CG
** * * *
40415977 ATGCCATTGTCCCAGACAG-GGTCTTACACGAAATCATATACG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAATAAAATACG
* * * * *
40416019 ATACCAACGTCCCAAACGTAGTCTTACACGTAAATCATAAGTA-A
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AAT-A-AAATACG
* * *
40416063 ATGCCAGCATCCCAGACATGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
40416093 ATAACACACA
Statistics
Matches: 88, Mismatches: 23, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.28
43 34 0.39
44 25 0.28
45 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATAAAATACG
Found at i:40416087 original size:44 final size:42
Alignment explanation
Indices: 40415986--40416093 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 42
40415976 GATGCCATTG
* * *
40415986 TCCCAGACAGGGTCTTACACGAAATCATATACGATACCAACG
1 TCCCAGACATGGTCTTACACGAAATCATATACAATACCAACA
* * * * *
40416028 TCCCAAACGTAGTCTTACACGTAAATCATAAGTA-AATGCCAGCA
1 TCCCAGACATGGTCTTACACG-AAATCAT-A-TACAATACCAACA
40416072 TCCCAGACATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
40416094 TAACACACAT
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
42 17 0.33
43 8 0.15
44 25 0.48
45 2 0.04
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCATATACAATACCAACA
Found at i:40434971 original size:26 final size:26
Alignment explanation
Indices: 40434942--40435049 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
40434932 TGATACAAAT
40434942 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
40434968 TGATAATGGGTTAGGTCAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
40434994 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
40435020 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
40435046 TGAT
1 TGAT
40435050 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:40438798 original size:24 final size:24
Alignment explanation
Indices: 40438744--40438792 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
40438734 GATTTAAACA
*
40438744 TTCATA-TTTATATTATTAAAATT
1 TTCATATTTTATAATATTAAAATT
40438767 TTCATATTTTATAATA-TAAAACTT
1 TTCATATTTTATAATATTAAAA-TT
40438791 TT
1 TT
40438793 ATTATTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (24 bp):
TTCATATTTTATAATATTAAAATT
Found at i:40438930 original size:25 final size:25
Alignment explanation
Indices: 40438902--40438965 Score: 58
Period size: 26 Copynumber: 2.5 Consensus size: 25
40438892 TATTATTAAT
*
40438902 GTAAATT-TATTATTCATATAAAATC
1 GTAAATTATATTATTCAT-TAAAATA
* *
40438927 GTAATATTATATAATTTATTAAAATA
1 GTAA-ATTATATTATTCATTAAAATA
* *
40438953 ATAAATTGTATTA
1 GTAAATTATATTA
40438966 ATAATTTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
25 11 0.35
26 12 0.39
27 8 0.26
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (25 bp):
GTAAATTATATTATTCATTAAAATA
Found at i:40441714 original size:2 final size:2
Alignment explanation
Indices: 40441707--40441740 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
40441697 TAAAAGAACG
40441707 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
40441741 AGACCTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:40451806 original size:18 final size:18
Alignment explanation
Indices: 40451769--40451806 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
40451759 ACCAGTACCA
40451769 AAAATGGACGGTGAAGATG
1 AAAATGGAC-GTGAAGATG
40451788 AAAATGGA-GTGACAGATG
1 AAAATGGACGTGA-AGATG
40451806 A
1 A
40451807 GCCAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 6 0.33
19 8 0.44
ACGTcount: A:0.45, C:0.05, G:0.34, T:0.16
Consensus pattern (18 bp):
AAAATGGACGTGAAGATG
Found at i:40452724 original size:24 final size:24
Alignment explanation
Indices: 40452697--40452755 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 24
40452687 AGAAGATGCT
*
40452697 CCAAAAGCAGGAGTGCTTGAACCC
1 CCAAAAGCAGGAGTACTTGAACCC
* *
40452721 CCAAAAGCA-GA--ACTTGAAGCT
1 CCAAAAGCAGGAGTACTTGAACCC
40452742 CCAAAAGCAGGAGT
1 CCAAAAGCAGGAGT
40452756 TGCGGAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 16 0.55
22 2 0.07
23 2 0.07
24 9 0.31
ACGTcount: A:0.39, C:0.25, G:0.24, T:0.12
Consensus pattern (24 bp):
CCAAAAGCAGGAGTACTTGAACCC
Found at i:40452903 original size:24 final size:24
Alignment explanation
Indices: 40452876--40453001 Score: 137
Period size: 24 Copynumber: 5.2 Consensus size: 24
40452866 TTCCAGTTGA
* *
40452876 ACCAAATGCAGGGGTGCTCGTGGC
1 ACCAAACGCAGGGGTGCTTGTGGC
* * * *
40452900 ACCAAATGCGGGGGTACTTGAGGC
1 ACCAAACGCAGGGGTGCTTGTGGC
40452924 ACCAAACGCAGGGGTGCTTGTGGC
1 ACCAAACGCAGGGGTGCTTGTGGC
* * *
40452948 ACCGAAAC-CTGGAGTGCTTGAGGC
1 ACC-AAACGCAGGGGTGCTTGTGGC
* *
40452972 GCCAAACGCAGGGGTGCTTGTCGC
1 ACCAAACGCAGGGGTGCTTGTGGC
40452996 ACCAAA
1 ACCAAA
40453002 AGCCGGGCTA
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
23 4 0.05
24 75 0.90
25 4 0.05
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.16
Consensus pattern (24 bp):
ACCAAACGCAGGGGTGCTTGTGGC
Found at i:40452928 original size:48 final size:47
Alignment explanation
Indices: 40452876--40453001 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 47
40452866 TTCCAGTTGA
* * * *
40452876 ACCAAATGCAGGGGTGCTCGTGGCACCAAATGCGGGGGTACTTGAGGC
1 ACCAAACGCAGGGGTGCTTGTGGCACCAAA-CCGGGAGTACTTGAGGC
* *
40452924 ACCAAACGCAGGGGTGCTTGTGGCACCGAAACCTGGAGTGCTTGAGGC
1 ACCAAACGCAGGGGTGCTTGTGGCACC-AAACCGGGAGTACTTGAGGC
* *
40452972 GCCAAACGCAGGGGTGCTTGTCGCACCAAA
1 ACCAAACGCAGGGGTGCTTGTGGCACCAAA
40453002 AGCCGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
47 3 0.04
48 63 0.91
49 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.16
Consensus pattern (47 bp):
ACCAAACGCAGGGGTGCTTGTGGCACCAAACCGGGAGTACTTGAGGC
Found at i:40453025 original size:48 final size:47
Alignment explanation
Indices: 40452874--40453031 Score: 156
Period size: 48 Copynumber: 3.3 Consensus size: 47
40452864 ACTTCCAGTT
* * * *
40452874 GAACCAAATGCAGGGGTGCTCGTGGCACCAAATGCGGGGGTACTTGAG
1 GAACCAAACGCAGGGGTGCTTGTGGCACCAAAAGC-CGGGTACTTGAG
* * *
40452922 GCACCAAACGCAGGGGTGCTTGTGGCACCGAAA-CCTGGAGTGCTTGAG
1 GAACCAAACGCAGGGGTGCTTGTGGCACCAAAAGCC-GG-GTACTTGAG
** * * *
40452970 GCGCCAAACGCAGGGGTGCTTGTCGCACCAAAAGCCGGGCTACTAGTG
1 GAACCAAACGCAGGGGTGCTTGTGGCACCAAAAGCCGGG-TACTTGAG
*
40453018 GAACCAAAGGCAGG
1 GAACCAAACGCAGG
40453032 ACTAGAACCA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
47 4 0.04
48 84 0.93
49 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (47 bp):
GAACCAAACGCAGGGGTGCTTGTGGCACCAAAAGCCGGGTACTTGAG
Found at i:40457075 original size:3 final size:3
Alignment explanation
Indices: 40457062--40457094 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
40457052 AAATAAATAC
40457062 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AA
40457095 CCGAATAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:40457185 original size:18 final size:18
Alignment explanation
Indices: 40457162--40457196 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
40457152 AATAAAAAGC
40457162 TAAATAAA-ATAAAATAAA
1 TAAATAAACA-AAAATAAA
40457180 TAAATAAACAAAAATAA
1 TAAATAAACAAAAATAA
40457197 TAATAGACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (18 bp):
TAAATAAACAAAAATAAA
Found at i:40458854 original size:44 final size:43
Alignment explanation
Indices: 40458779--40459033 Score: 261
Period size: 44 Copynumber: 5.8 Consensus size: 43
40458769 TCGTAGATTT
* * *
40458779 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-ATCTTC
* * *
40458823 AATATGCTCCACTGTAACTTCAGGGAGATAAGATTT-ATGGGC-TC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGAT---CTTC
* *
40458867 AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTG-TGGC-TC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGAT--CTTC
* *
40458910 TAATCTGCTCCACTGCAACTTTAGAGAAATAAGATTT-ATGGCTTC
1 -AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGAT--CTTC
* *
40458955 AATCTGCTCCACTGCAACTTCAGAGAGGTAAGGTTTG-TGGCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGAT--CTTC
40458999 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
40459034 CGCCACGATG
Statistics
Matches: 186, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 176 0.95
45 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGATCTTC
Found at i:40458930 original size:88 final size:88
Alignment explanation
Indices: 40458779--40459033 Score: 361
Period size: 88 Copynumber: 2.9 Consensus size: 88
40458769 TCGTAGATTT
* *** * *
40458779 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCATCTTCAATATGCTCCACTGTAACTTC
1 AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCACTGCAACTTC
*
40458844 AGGGAGATAAGATTTATGGGC-TC
66 AGAGAGATAAGATTTAT-GGCTTC
40458867 AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTGGC-TCTAATCTGCTCCACTGCAACTT
1 AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTC-AATCTGCTCCACTGCAACTT
* *
40458931 TAGAGAAATAAGATTTATGGCTTC
65 CAGAGAGATAAGATTTATGGCTTC
* * * *
40458955 AATCTGCTCCACTGCAACTTCAGAGAGGTAAGGTTTGTGGCTTCAATCTGCTCCACTGCAACTTC
1 AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCACTGCAACTTC
40459020 AGAGAGATAAGATT
66 AGAGAGATAAGATT
40459034 CGCCACGATG
Statistics
Matches: 149, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
87 5 0.03
88 142 0.95
89 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (88 bp):
AATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCACTGCAACTTC
AGAGAGATAAGATTTATGGCTTC
Found at i:40458974 original size:132 final size:134
Alignment explanation
Indices: 40458727--40459033 Score: 381
Period size: 132 Copynumber: 2.3 Consensus size: 134
40458717 CTCACATCTA
* * *
40458727 CAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGATTTAATCTGTTCCACT
1 CAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--A-TCG-AGATCTAATCTGCTCCACT
* * *
40458792 GCAACTTCAGGGAAATAAGATTTGCATCTTCAATATGCTCCACTGTAACTTCAGGGAGATAAGAT
62 GCAACTTCAGAGAAATAAGATTT-CATCTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGAT
40458857 TTATGGGC-T
126 TTAT-GGCTT
* *
40458866 CAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTG-T-G-GCTCTAATCTGCTCCACTGCAA
1 CAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATCGAGATCTAATCTGCTCCACTGCAA
* * * * *
40458928 CTTTAGAGAAATAAGATTT-ATGGCTTCAATCTGCTCCACTGCAACTTCAGAGAGGTAAGGTTTG
66 CTTCAGAGAAATAAGATTTCAT--CTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTA
40458992 TGGCTT
129 TGGCTT
*
40458998 CAATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
1 CAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
40459034 CGCCACGATG
Statistics
Matches: 150, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
130 2 0.01
131 3 0.02
132 107 0.71
134 1 0.01
135 1 0.01
139 36 0.24
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (134 bp):
CAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATCGAGATCTAATCTGCTCCACTGCAA
CTTCAGAGAAATAAGATTTCATCTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATG
GCTT
Found at i:40467156 original size:19 final size:19
Alignment explanation
Indices: 40467140--40467184 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
40467130 TTATGAAACT
*
40467140 TAATGCATATGATGAAATG
1 TAATGCAGATGATGAAATG
*
40467159 TAATGCAGATGAATGCAATG
1 TAATGCAGATG-ATGAAATG
40467179 -AATGCA
1 TAATGCA
40467185 AAAAGAGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (19 bp):
TAATGCAGATGATGAAATG
Found at i:40470986 original size:3 final size:3
Alignment explanation
Indices: 40470978--40471011 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
40470968 ATAAATACAC
*
40470978 AAT AAT AAT AAT AAT AAT AAT -AT ACT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
40471012 CGGAATAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:40471110 original size:18 final size:18
Alignment explanation
Indices: 40471079--40471113 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40471069 AATAAAAAGG
*
40471079 TAAATAAAATAAAATAAA
1 TAAATAAAAGAAAATAAA
*
40471097 TAAATAAACGAAAATAA
1 TAAATAAAAGAAAATAA
40471114 TAATGGGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
TAAATAAAAGAAAATAAA
Found at i:40478991 original size:102 final size:102
Alignment explanation
Indices: 40478815--40479013 Score: 312
Period size: 102 Copynumber: 2.0 Consensus size: 102
40478805 TTAAAAGAAC
* * *
40478815 GAGTTTATGTTTTTAAGCTATTTTGAACCCTAGAAATGAAAATAAACCATTCAGTCACAGTGAAT
1 GAGTTTATGTTTTTAAGCTATTTTGAACCCTAGAAATAAAAATAAACCATTCAGTCACAGTAAAC
*
40478880 ATGTTGAGTTGTGAAGTACTAAATATTGTTTGGAAAT
66 ATGTTGAGTTGTGAAATACTAAATATTGTTTGGAAAT
40478917 GAGTTTATGTTTTTAAGC-AGTTTTGAACCCT-GAAAATAAAAATAAACCATTCAGTCACAGTAA
1 GAGTTTATGTTTTTAAGCTA-TTTTGAACCCTAG-AAATAAAAATAAACCATTCAGTCACAGTAA
* *
40478980 ACATGTTGAGTTGTGAAATATTAAATATTTTTTG
64 ACATGTTGAGTTGTGAAATACTAAATATTGTTTG
40479014 AAAAAATGGA
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
101 2 0.02
102 87 0.98
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (102 bp):
GAGTTTATGTTTTTAAGCTATTTTGAACCCTAGAAATAAAAATAAACCATTCAGTCACAGTAAAC
ATGTTGAGTTGTGAAATACTAAATATTGTTTGGAAAT
Found at i:40479069 original size:12 final size:12
Alignment explanation
Indices: 40479051--40479080 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
40479041 GTAGGTTTCC
40479051 AAAATGGAAATG
1 AAAATGGAAATG
*
40479063 GAAATGGAAATG
1 AAAATGGAAATG
40479075 AAAATG
1 AAAATG
40479081 ATTCATTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:40483008 original size:45 final size:45
Alignment explanation
Indices: 40482957--40483042 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
40482947 ATGTAATCTG
40482957 AACTCATTGAGTTGTGGTCTGAGTTCA-TGATATATGTGACATCCA
1 AACTCATTGAGTTGTGGTCTGAGTT-AGTGATATATGTGACATCCA
*
40483002 AACTCATTGAGTTGTGGTCTGAGTTAGTTATATATGTGACA
1 AACTCATTGAGTTGTGGTCTGAGTTAGTGATATATGTGACA
40483043 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTGAGTTAGTGATATATGTGACATCCA
Found at i:40497835 original size:25 final size:25
Alignment explanation
Indices: 40497807--40497855 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
40497797 TCCTAAAATG
40497807 ATAATTTTTAGTCTACGAAATCCAT
1 ATAATTTTTAGTCTACGAAATCCAT
40497832 ATAATTTTTAGTCTACGAAATCCA
1 ATAATTTTTAGTCTACGAAATCCA
40497856 AGAATGTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (25 bp):
ATAATTTTTAGTCTACGAAATCCAT
Found at i:40500453 original size:44 final size:44
Alignment explanation
Indices: 40500363--40500497 Score: 107
Period size: 44 Copynumber: 3.1 Consensus size: 44
40500353 TCTTTTCCAA
* * * *
40500363 GTAGCTTC-ATTCTAAC-CCACTGCAACTTCA-GGGGTATAGGAATT
1 GTAGCTTCAATT-T-ACTCCACTACAACTTCATGGAG-ATAAGACTT
* * ** *
40500407 GTAGTTTTAATTTACTCCGTTGCAACTTC-TGGAAGATAAGACTT
1 GTAGCTTCAATTTACTCCACTACAACTTCATGG-AGATAAGACTT
* *
40500451 GTAGCTTCAATTTGCTCCACTACAACTTCATGGAGATAAGATTT
1 GTAGCTTCAATTTACTCCACTACAACTTCATGGAGATAAGACTT
40500495 GTA
1 GTA
40500498 ACTTGTAGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
43 2 0.03
44 63 0.88
45 7 0.10
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
GTAGCTTCAATTTACTCCACTACAACTTCATGGAGATAAGACTT
Found at i:40500709 original size:89 final size:89
Alignment explanation
Indices: 40500602--40500819 Score: 303
Period size: 89 Copynumber: 2.4 Consensus size: 89
40500592 ATTTGTCGCG
**
40500602 TCAGTCTGCTCTACTGCAACTTCAACAAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACT
1 TCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACT
*
40500667 TCA-AGGAGATAAGATTTGCTATCT
66 TCATA-GAGATAAGATTCGCTATCT
* * * * * *
40500691 TCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGTTCTACTGCAACT
1 TCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACT
*
40500756 TCATAGAGATAAGATTCGCTATTT
66 TCATAGAGATAAGATTCGCTATCT
* * *
40500780 TCAATCTGCTCTTCTGCAACTTAAAGGAGATAAGATTTGT
1 TCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGT
40500820 TACGGTGACT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 111 0.99
90 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (89 bp):
TCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACT
TCATAGAGATAAGATTCGCTATCT
Found at i:40500711 original size:45 final size:44
Alignment explanation
Indices: 40500591--40500819 Score: 262
Period size: 44 Copynumber: 5.2 Consensus size: 44
40500581 GAAGGTATAG
* * * **
40500591 GATTTGTCGCGTCAGTCTGCTCTACTGCAACTTCAACAAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAAGGAGATAA
* *
40500635 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAAGGAGATAA
* * * * *
40500679 GATTTGCTATCTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAAGGAGATAA
*
40500724 GATTTGTAGCTTCAATCTGTTCTACTGCAACTTCATA-GAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTGCAACTTCA-AGGAGATAA
* ** * *
40500768 GATTCGCTATTTTCAATCTGCTCTTCTGCAACTTAAAGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAAGGAGATAA
40500813 GATTTGT
1 GATTTGT
40500820 TACGGTGACT
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
44 83 0.53
45 75 0.47
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAAGGAGATAA
Found at i:40504817 original size:14 final size:14
Alignment explanation
Indices: 40504798--40504839 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
40504788 GGACTTGGAC
40504798 TTTTATTTATTTGG
1 TTTTATTTATTTGG
40504812 TTTTATTTATTT--
1 TTTTATTTATTTGG
*
40504824 TATTATTT-TTTGG
1 TTTTATTTATTTGG
40504837 TTT
1 TTT
40504840 ATGATGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 3 0.12
12 7 0.29
13 2 0.08
14 12 0.50
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TTTTATTTATTTGG
Found at i:40505313 original size:25 final size:26
Alignment explanation
Indices: 40505276--40505327 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
40505266 TGAAATGGGT
*
40505276 AACATTAAATGGATAAATGGA-ATGA
1 AACATTAAATGGAGAAATGGATATGA
* * *
40505301 AACATTGAGTGGAGAAATTGATATGA
1 AACATTAAATGGAGAAATGGATATGA
40505327 A
1 A
40505328 TTATTAGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.48, C:0.04, G:0.23, T:0.25
Consensus pattern (26 bp):
AACATTAAATGGAGAAATGGATATGA
Found at i:40505399 original size:13 final size:13
Alignment explanation
Indices: 40505381--40505406 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40505371 TGTATAATAC
40505381 GAAATGGTTATAT
1 GAAATGGTTATAT
40505394 GAAATGGTTATAT
1 GAAATGGTTATAT
40505407 AAAGTAGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
GAAATGGTTATAT
Found at i:40505525 original size:13 final size:13
Alignment explanation
Indices: 40505507--40505531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40505497 GTAAAAAGGG
40505507 ACATTTGAAATGA
1 ACATTTGAAATGA
40505520 ACATTTGAAATG
1 ACATTTGAAATG
40505532 CTAAATGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (13 bp):
ACATTTGAAATGA
Found at i:40510716 original size:24 final size:24
Alignment explanation
Indices: 40510675--40510732 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
40510665 TCCTCATCAA
* * *
40510675 CTGAAGTTGTGCCCACTGCACAAG
1 CTGAAGTTGAGACAACTGCACAAG
*
40510699 CTGAAGTTGAGACAACTGCACTAG
1 CTGAAGTTGAGACAACTGCACAAG
40510723 CT-AATGTTGA
1 CTGAA-GTTGA
40510733 TGTGATTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (24 bp):
CTGAAGTTGAGACAACTGCACAAG
Found at i:40512808 original size:26 final size:26
Alignment explanation
Indices: 40512779--40512836 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
40512769 TGGTACAAAT
40512779 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
40512805 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
40512831 TGATAA
1 TGATAA
40512837 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:40514497 original size:27 final size:27
Alignment explanation
Indices: 40514456--40514595 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
40514446 GAGGAAGCGT
*
40514456 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
40514483 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
40514510 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
40514537 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
40514565 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
40514591 TCTGG
1 TCTGG
40514596 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:40514541 original size:54 final size:55
Alignment explanation
Indices: 40514456--40514595 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
40514446 GAGGAAGCGT
* * *
40514456 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
40514510 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
40514565 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
40514596 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:40514681 original size:19 final size:22
Alignment explanation
Indices: 40514657--40514696 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
40514647 CTCTCCACAC
40514657 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
40514676 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
40514697 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:40516167 original size:21 final size:22
Alignment explanation
Indices: 40516134--40516176 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
40516124 ATGCCTCTTT
* *
40516134 TATGACAAGTCTA-TGATATGG
1 TATGAAAACTCTAGTGATATGG
*
40516155 TATGAAAACTCTAGTGTTATGG
1 TATGAAAACTCTAGTGATATGG
40516177 CAGTTTCATC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (22 bp):
TATGAAAACTCTAGTGATATGG
Found at i:40516785 original size:21 final size:21
Alignment explanation
Indices: 40516755--40516794 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
40516745 ACCTTTTCTA
* *
40516755 AAGTTCAAAGTCAAAACCATT
1 AAGTTAAAAGGCAAAACCATT
40516776 AAGTTAAAAGGCAAAACCA
1 AAGTTAAAAGGCAAAACCA
40516795 CTTCATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.17
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACCATT
Found at i:40521085 original size:21 final size:21
Alignment explanation
Indices: 40521061--40521116 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 21
40521051 TTTTTATGAA
40521061 ATTAATAAATAATTATTATTT
1 ATTAATAAATAATTATTATTT
*
40521082 ATT-A-AAATTA-TATTATTT
1 ATTAATAAATAATTATTATTT
*
40521100 -TAAAT-AATAATT-TTATT
1 ATTAATAAATAATTATTATT
40521117 AATGAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
17 1 0.03
18 18 0.62
19 6 0.21
20 1 0.03
21 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTAATAAATAATTATTATTT
Found at i:40522697 original size:21 final size:21
Alignment explanation
Indices: 40522673--40522722 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
40522663 GAGCAACTAC
*
40522673 AAACATTTAACATTCAAATCA-
1 AAACATTTAACATGCAAA-CAT
* *
40522694 AAACATATCACATGCAAACAT
1 AAACATTTAACATGCAAACAT
40522715 AAACATTT
1 AAACATTT
40522723 CAAACCATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.26
Consensus pattern (21 bp):
AAACATTTAACATGCAAACAT
Found at i:40530592 original size:94 final size:94
Alignment explanation
Indices: 40530412--40530606 Score: 232
Period size: 94 Copynumber: 2.1 Consensus size: 94
40530402 TATGTCTGCT
* * **
40530412 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGCATGAGAGCCAGTGTAAGGTATGTCTGGG
1 AGTGTAAGACATGTTTGGGACATACATCAGCCACAGCACGAGAGCCAGTGTAAGACATGTCTGGG
* **
40530477 ACATGTATCGACCTCGAGATATTTAAGCC
66 ACATGCATCGACCTCGAGATATACAAGCC
* * *
40530506 AGTGTAAGACATGTTTGGGACATACATC-GGCATTGAG-ACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTTTGGGACATACATCAGCCA--CAGCACGAGAGCCAGTGTAAGACATGTCTG
* * * *
40530569 GGACATGCATCGGCCTTGCGATATACAAGCT
64 GGACATGCATCGACCTCGAGATATACAAGCC
40530600 AGTGTAA
1 AGTGTAA
40530607 AACCTGTCTG
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
93 3 0.04
94 80 0.94
95 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATACATCAGCCACAGCACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGACCTCGAGATATACAAGCC
Found at i:40530699 original size:49 final size:49
Alignment explanation
Indices: 40530412--40530765 Score: 197
Period size: 46 Copynumber: 7.5 Consensus size: 49
40530402 TATGTCTGCT
* * * *
40530412 AGTGTAAGACATGTTTGGGACAT-GCATC-AGC-C-ACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAG-ATGAAAGCC
** * * * **
40530458 AGTGTAAGGTATGTCTGGGACAT-GTATCGACCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * * * *
40530506 AGTGTAAGACATGTTTGGGACAT-ACATCGGCATTG--AGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* *
40530552 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGCGAT--AT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGACC-T-CGATAGATGA-AAGCC
* * * * * * * *
40530600 AGTGTAAAACCTGTCT-GGACATGGCGTC-AGCTTG-T-GGTG--TGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* *
40530643 AGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * * *
40530692 AGTGTAAGACCTCTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
40530741 AGTGTAAGAACATGTCTGGGACATG
1 AGTGTAAG-ACATGTCTGGGACATG
40530766 ATGTCGGTAT
Statistics
Matches: 232, Mismatches: 56, Indels: 36
0.72 0.17 0.11
Matches are distributed among these distances:
43 15 0.06
44 12 0.05
45 4 0.02
46 61 0.26
47 14 0.06
48 59 0.25
49 53 0.23
50 14 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:40540834 original size:16 final size:18
Alignment explanation
Indices: 40540813--40540849 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
40540803 AGTCTCTAGT
*
40540813 AGTTT-ACTATAGT-TTC
1 AGTTTAACTACAGTCTTC
40540829 AGTTTAACTACAGTCTTC
1 AGTTTAACTACAGTCTTC
40540847 AGT
1 AGT
40540850 ATATACTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (18 bp):
AGTTTAACTACAGTCTTC
Found at i:40554315 original size:30 final size:30
Alignment explanation
Indices: 40554279--40554340 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
40554269 ACGGTCAGGG
* *
40554279 ACATGGGTGTGTACCCAGGCCGTGTAAGTC
1 ACATGGGCGTGTACCCAGGCCGTGTAACTC
** *
40554309 ACATGGGCGTGTGTCCAGGCTGTGTAACTC
1 ACATGGGCGTGTACCCAGGCCGTGTAACTC
40554339 AC
1 AC
40554341 TGTTTATGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (30 bp):
ACATGGGCGTGTACCCAGGCCGTGTAACTC
Found at i:40565866 original size:46 final size:46
Alignment explanation
Indices: 40565816--40565944 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
40565806 TGGTTGAGCA
*
40565816 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
40565862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
40565908 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40565945 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:40572047 original size:36 final size:37
Alignment explanation
Indices: 40571987--40572059 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
40571977 TTTGAGGACG
40571987 AAAATCCTTAAAGGGGGGGAGTTGTAATATCCCGAAT
1 AAAATCCTTAAAGGGGGGGAGTTGTAATATCCCGAAT
40572024 AAAATCCTTAAA-GGGGGGAGTTGTAATATCCCGAAT
1 AAAATCCTTAAAGGGGGGGAGTTGTAATATCCCGAAT
40572060 TAGGGCCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 24 0.67
37 12 0.33
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.25
Consensus pattern (37 bp):
AAAATCCTTAAAGGGGGGGAGTTGTAATATCCCGAAT
Found at i:40573385 original size:46 final size:46
Alignment explanation
Indices: 40573329--40573504 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
40573319 TGGTTGAGCA
*
40573329 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
40573375 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
40573420 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
40573468 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
40573505 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:40573485 original size:93 final size:93
Alignment explanation
Indices: 40573326--40573497 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
40573316 GGATGGTTGA
* * * *
40573326 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
40573391 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
40573419 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
40573484 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
40573498 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:40583933 original size:33 final size:33
Alignment explanation
Indices: 40583896--40583963 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
40583886 CTAAGACAGT
40583896 ATCGGTCGGATCCGTTATATATTGTTACTATAG
1 ATCGGTCGGATCCGTTATATATTGTTACTATAG
40583929 ATCGGTCGGATCCGTTATATATTGTTACTATAG
1 ATCGGTCGGATCCGTTATATATTGTTACTATAG
40583962 AT
1 AT
40583964 GAGATCGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (33 bp):
ATCGGTCGGATCCGTTATATATTGTTACTATAG
Found at i:40590256 original size:14 final size:13
Alignment explanation
Indices: 40590228--40590260 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
40590218 TAAGTTTGTG
40590228 ATGG-AATGAATT
1 ATGGTAATGAATT
40590240 ATGGTAATGAGATT
1 ATGGTAATGA-ATT
40590254 ATGGTAA
1 ATGGTAA
40590261 ATCACGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
ATGGTAATGAATT
Found at i:40594928 original size:54 final size:53
Alignment explanation
Indices: 40594869--40595059 Score: 156
Period size: 54 Copynumber: 3.6 Consensus size: 53
40594859 CATCACGTAG
* * * *
40594869 GGGCAAAACAATCATTTTACCTCATAAAGGAAAGACCGTCATTTTACCTCATAA
1 GGGCAAAACAGTCATTTTACCTCATAAGGGAAA-ACAGTCATTTTACCACATAA
* * * *
40594923 GGGCAAAATC-GTTATTTTATCACATAAGGGCAAAACAGTCATTTTGCCACATAA
1 GGGCAAAA-CAGTCATTTTACCTCATAAGGG-AAAACAGTCATTTTACCACATAA
* * *
40594977 GCGC-AAACACGTCATTTTACCTCATAAGGGAAAA-ATTGTCAATTTATCACAT-A
1 GGGCAAAACA-GTCATTTTACCTCATAAGGGAAAACA--GTCATTTTACCACATAA
* * * * *
40595030 GGGAAAAATAGACATTTCATCTCATAAGGG
1 GGGCAAAACAGTCATTTTACCTCATAAGGG
40595060 TTCAGGTACG
Statistics
Matches: 109, Mismatches: 21, Indels: 15
0.75 0.14 0.10
Matches are distributed among these distances:
52 2 0.02
53 27 0.25
54 76 0.70
55 4 0.04
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (53 bp):
GGGCAAAACAGTCATTTTACCTCATAAGGGAAAACAGTCATTTTACCACATAA
Found at i:40594958 original size:81 final size:81
Alignment explanation
Indices: 40594860--40595037 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
40594850 ATACACATAC
* * *
40594860 ATCACGTAGGGGCAAAACAATCATTTTACCTCATAAAG-GAAAGAC-CGTCATTTTACCTCATAA
1 ATCACATAAGGGCAAAACAATCATTTTACCACAT-AAGCGAAA-ACACGTCATTTTACCTCATAA
* * *
40594923 GGGCAAAATCGTTATTTT
64 GGGAAAAATCGTCAATTT
* * *
40594941 ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGCGCAAACACGTCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAATCATTTTACCACATAAGCGAAAACACGTCATTTTACCTCATAAGG
*
40595006 GAAAAATTGTCAATTT
66 GAAAAATCGTCAATTT
*
40595022 ATCACAT-AGGGAAAAA
1 ATCACATAAGGGCAAAA
40595038 TAGACATTTC
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 13 0.15
81 71 0.85
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAATCATTTTACCACATAAGCGAAAACACGTCATTTTACCTCATAAGG
GAAAAATCGTCAATTT
Found at i:40595017 original size:27 final size:27
Alignment explanation
Indices: 40594880--40595059 Score: 141
Period size: 27 Copynumber: 6.7 Consensus size: 27
40594870 GGCAAAACAA
* * *
40594880 TCATTTTACCTCATAAAGGAAAGACCG
1 TCATTTTACCTCATAAGGGAAAAATCG
*
40594907 TCATTTTACCTCATAAGGGCAAAATCG
1 TCATTTTACCTCATAAGGGAAAAATCG
* * * *
40594934 TTATTTTATCACATAAGGGCAAAA-CAG
1 TCATTTTACCTCATAAGGGAAAAATC-G
* * * *
40594961 TCATTTTGCCACATAAGCGCAAACA-CG
1 TCATTTTACCTCATAAG-GGAAAAATCG
*
40594988 TCATTTTACCTCATAAGGGAAAAATTG
1 TCATTTTACCTCATAAGGGAAAAATCG
* * * *
40595015 TCAATTTATCACAT-AGGGAAAAATAG
1 TCATTTTACCTCATAAGGGAAAAATCG
* * *
40595041 ACATTTCATCTCATAAGGG
1 TCATTTTACCTCATAAGGG
40595060 TTCAGGTACG
Statistics
Matches: 123, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 27 0.22
27 91 0.74
28 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGAAAAATCG
Found at i:40595055 original size:26 final size:26
Alignment explanation
Indices: 40594992--40595055 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
40594982 AACACGTCAT
* * *
40594992 TTTACCTCATAAGGGAAAAATTGTCAA
1 TTTATCTCAT-AGGGAAAAATAGACAA
*
40595019 TTTATCACATAGGGAAAAATAGAC-A
1 TTTATCTCATAGGGAAAAATAGACAA
40595044 TTTCATCTCATA
1 TTT-ATCTCATA
40595056 AGGGTTCAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 4 0.13
26 19 0.61
27 8 0.26
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (26 bp):
TTTATCTCATAGGGAAAAATAGACAA
Found at i:40609679 original size:21 final size:21
Alignment explanation
Indices: 40609655--40609722 Score: 102
Period size: 21 Copynumber: 3.2 Consensus size: 21
40609645 CAAGGTTCTA
*
40609655 GGTTCATGGTTTGAGGTTTGG
1 GGTTTATGGTTTGAGGTTTGG
*
40609676 GGTTTAAGGTTTGAGGTTTGG
1 GGTTTATGGTTTGAGGTTTGG
40609697 GGTTTATGGTTTG-GTGTTTGG
1 GGTTTATGGTTTGAG-GTTTGG
40609718 GGTTT
1 GGTTT
40609723 GGGATTTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 1 0.02
21 42 0.98
ACGTcount: A:0.09, C:0.01, G:0.43, T:0.47
Consensus pattern (21 bp):
GGTTTATGGTTTGAGGTTTGG
Found at i:40609724 original size:7 final size:7
Alignment explanation
Indices: 40609662--40609725 Score: 65
Period size: 7 Copynumber: 9.1 Consensus size: 7
40609652 CTAGGTTCAT
*
40609662 GGTTTGA
1 GGTTTGG
40609669 GGTTTGG
1 GGTTTGG
**
40609676 GGTTTAA
1 GGTTTGG
*
40609683 GGTTTGA
1 GGTTTGG
40609690 GGTTTGG
1 GGTTTGG
**
40609697 GGTTTAT
1 GGTTTGG
40609704 GGTTTGG
1 GGTTTGG
*
40609711 TGTTTGG
1 GGTTTGG
40609718 GGTTTGG
1 GGTTTGG
40609725 G
1 G
40609726 ATTTAAGACA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.45
Consensus pattern (7 bp):
GGTTTGG
Found at i:40610275 original size:7 final size:7
Alignment explanation
Indices: 40610265--40610315 Score: 66
Period size: 7 Copynumber: 7.3 Consensus size: 7
40610255 GAGGTTTAAA
*
40610265 GTTCATG
1 GTTCAAG
40610272 GTTCAAG
1 GTTCAAG
*
40610279 GTGCAAG
1 GTTCAAG
40610286 GTTCAAG
1 GTTCAAG
*
40610293 GTTCGAG
1 GTTCAAG
*
40610300 GTTTAAG
1 GTTCAAG
40610307 GTTCAAG
1 GTTCAAG
40610314 GT
1 GT
40610316 GTGATGTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (7 bp):
GTTCAAG
Found at i:40610324 original size:21 final size:20
Alignment explanation
Indices: 40610283--40610356 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 20
40610273 TTCAAGGTGC
*
40610283 AAGGTTCAAGGTTCGAGGTTT
1 AAGGTTCAAGGTT-GATGTTT
40610304 AAGGTTCAAGGTGTGATGTTT
1 AAGGTTCAAGGT-TGATGTTT
* * * *
40610325 GAGGTTCAAGATTCATGGCTT
1 AAGGTTCAAGGTTGAT-GTTT
40610346 AAGGTTCAAGG
1 AAGGTTCAAGG
40610357 GTTGGGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 3 0.07
21 40 0.91
22 1 0.02
ACGTcount: A:0.26, C:0.09, G:0.32, T:0.32
Consensus pattern (20 bp):
AAGGTTCAAGGTTGATGTTT
Found at i:40611202 original size:20 final size:21
Alignment explanation
Indices: 40611177--40611216 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
40611167 CACTTGAAGC
40611177 AGGGC-ACACG-TCCGTGTGGA
1 AGGGCAACACGCT-CGTGTGGA
40611197 AGGGCAACACGCTCGTGTGG
1 AGGGCAACACGCTCGTGTGG
40611217 CCATTGTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 12 0.67
22 1 0.06
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCTCGTGTGGA
Found at i:40612515 original size:49 final size:49
Alignment explanation
Indices: 40612397--40612572 Score: 187
Period size: 49 Copynumber: 3.6 Consensus size: 49
40612387 GATAAAATGC
* * ** * * *
40612397 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTAGCACAT-TAAAT-T
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCAGTGT
* * *
40612445 CGATGCCATGCCCCAAACAGGTCTTACACTGACTTTCATATATCAAG-GT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGT
* * * *
40612494 CGATGTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGT
40612543 CGATGCCATGTCCCAGACAGGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
40612573 AACGCACAAC
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
47 18 0.17
48 18 0.17
49 71 0.66
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGT
Found at i:40621723 original size:6 final size:6
Alignment explanation
Indices: 40621712--40621738 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
40621702 TTGTTCTAAT
40621712 TGTGGG TGTGGG TGTGGG TGTGGG TGT
1 TGTGGG TGTGGG TGTGGG TGTGGG TGT
40621739 TAGGAGGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (6 bp):
TGTGGG
Found at i:40622013 original size:18 final size:18
Alignment explanation
Indices: 40621979--40622014 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
40621969 AAAAGGAAAC
*
40621979 ATATAAGGGTTAAGATAT
1 ATATAAGGGCTAAGATAT
*
40621997 ATATAAGGGCTAGGATAT
1 ATATAAGGGCTAAGATAT
40622015 GCACCTGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (18 bp):
ATATAAGGGCTAAGATAT
Found at i:40623587 original size:9 final size:9
Alignment explanation
Indices: 40623554--40623609 Score: 69
Period size: 9 Copynumber: 6.2 Consensus size: 9
40623544 ATTATAAAAT
40623554 AAAAATTAA
1 AAAAATTAA
* *
40623563 TTAAAATTAC
1 -AAAAATTAA
*
40623573 ATAAATTAA
1 AAAAATTAA
40623582 AAAAATTAA
1 AAAAATTAA
40623591 AAAAATT-A
1 AAAAATTAA
40623599 AAAAATTAA
1 AAAAATTAA
40623608 AA
1 AA
40623610 TTAACTCTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
8 8 0.21
9 24 0.62
10 7 0.18
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAAATTAA
Found at i:40623594 original size:26 final size:27
Alignment explanation
Indices: 40623554--40623609 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
40623544 ATTATAAAAT
* *
40623554 AAAAATTAATTAAAATTACATAAATTAA
1 AAAAATTAAATAAAATTA-AAAAATTAA
40623582 AAAAATTAAA-AAAATTAAAAAATTAA
1 AAAAATTAAATAAAATTAAAAAATTAA
40623608 AA
1 AA
40623610 TTAACTCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 10 0.38
27 7 0.27
28 9 0.35
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (27 bp):
AAAAATTAAATAAAATTAAAAAATTAA
Found at i:40628574 original size:20 final size:19
Alignment explanation
Indices: 40628537--40628576 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
40628527 TAATATTTTC
* *
40628537 TCATAAAAAAGATTGAAAA
1 TCATAAAAAAAATAGAAAA
40628556 TCATAAAAAAAATAAGAAAA
1 TCATAAAAAAAAT-AGAAAA
40628576 T
1 T
40628577 TTGTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (19 bp):
TCATAAAAAAAATAGAAAA
Found at i:40628648 original size:19 final size:19
Alignment explanation
Indices: 40628599--40628666 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
40628589 AAAAAATATT
40628599 ATTTATTAAAAAC--ATTGAA
1 ATTTA-TAAAAACTTATT-AA
* *
40628618 ATTAATATAAACTTATTAA
1 ATTTATAAAAACTTATTAA
40628637 ATTTATAAAAACTTA-TAA
1 ATTTATAAAAACTTATTAA
*
40628655 ATATTGTAAAAA
1 AT-TTATAAAAA
40628667 TATAAAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 11 0.27
19 27 0.66
20 3 0.07
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTTATAAAAACTTATTAA
Found at i:40628691 original size:27 final size:27
Alignment explanation
Indices: 40628640--40628702 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
40628630 TTATTAAATT
*
40628640 TATAAAAACTTATAAATATTGTAAAAA
1 TATAAAAACTTATAAATATTATAAAAA
*
40628667 TATAAAAACTCTAATAAAT-TATAAAAAAA
1 TATAAAAACT-T-ATAAATAT-TATAAAAA
40628696 TATAAAA
1 TATAAAA
40628703 TTAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 10 0.32
28 2 0.06
29 19 0.61
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (27 bp):
TATAAAAACTTATAAATATTATAAAAA
Found at i:40629323 original size:38 final size:38
Alignment explanation
Indices: 40629272--40629345 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 38
40629262 TCAATTCAGG
40629272 TTTTTATGATTTTATATAAATTTTAATAC-TTTTTATTC
1 TTTTTATGATTTTATA-AAATTTTAATACATTTTTATTC
*
40629310 TTTTTATGATTTTATAGAATTTTAATACATTTTTAT
1 TTTTTATGATTTTATAAAATTTTAATACATTTTTAT
40629346 GAAATTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 11 0.32
38 23 0.68
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (38 bp):
TTTTTATGATTTTATAAAATTTTAATACATTTTTATTC
Found at i:40629364 original size:21 final size:22
Alignment explanation
Indices: 40629314--40629366 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
40629304 TTATTCTTTT
40629314 TATGATTTTATAGAATTTTAATA
1 TATG-TTTTATAGAATTTTAATA
*
40629337 CAT-TTTTAT-GAAATTTTAA-A
1 TATGTTTTATAG-AATTTTAATA
40629357 TATGTTTTAT
1 TATGTTTTAT
40629367 TAATTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.15
21 20 0.77
23 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.55
Consensus pattern (22 bp):
TATGTTTTATAGAATTTTAATA
Found at i:40629436 original size:18 final size:18
Alignment explanation
Indices: 40629280--40629503 Score: 93
Period size: 20 Copynumber: 11.8 Consensus size: 18
40629270 GGTTTTTATG
*
40629280 ATTTTATATAAATTTTAAT
1 ATTTT-TATAATTTTTAAT
**
40629299 ACTTTTTATTCTTTTT-AT
1 A-TTTTTATAATTTTTAAT
*
40629317 GA-TTTTATAGAATTTTAAT
1 -ATTTTTATA-ATTTTTAAT
*
40629336 ACATTTTTATGAAATTTTAAAT
1 --ATTTTTAT--AATTTTTAAT
*
40629358 ATGTTTTATTAATTTATAAT
1 AT-TTTTA-TAATTTTTAAT
* *
40629378 -TTATTA-GATTTATT-AT
1 ATTTTTATAATTT-TTAAT
* * *
40629394 ATTTTTGATAGTATTTATT
1 ATTTTT-ATAATTTTTAAT
*
40629413 AATTTTTATAATTTTTAAA
1 -ATTTTTATAATTTTTAAT
* *
40629432 ATTTTAAATCAATTTTCATAT
1 ATTTT-TAT-AATTTTTA-AT
40629453 ATTTTT-TAATTTTT-AT
1 ATTTTTATAATTTTTAAT
* *
40629469 ATTTTTTTGATATTTTTACT
1 ATTTTTAT-A-ATTTTTAAT
40629489 ATTTTTATAATTTTT
1 ATTTTTATAATTTTT
40629504 TTTTCTGATT
Statistics
Matches: 152, Mismatches: 30, Indels: 47
0.66 0.13 0.21
Matches are distributed among these distances:
16 14 0.09
17 12 0.08
18 31 0.20
19 33 0.22
20 36 0.24
21 17 0.11
22 8 0.05
23 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (18 bp):
ATTTTTATAATTTTTAAT
Found at i:40629436 original size:38 final size:36
Alignment explanation
Indices: 40629370--40629535 Score: 86
Period size: 38 Copynumber: 4.6 Consensus size: 36
40629360 GTTTTATTAA
*
40629370 TTTATAATTTATTA-GATTTATTAT--ATTTTTGATAGT
1 TTTATAATTT-TTATAATTT-TTATAAATTTTTGATA-T
**
40629406 ATTTATTAATTTTTATAATTTTTA-AAATTTTAAATCAAT
1 -TTTA-TAATTTTTATAATTTTTATAAATTTTTGAT--AT
**
40629445 TTTCATATATTTTT-TAATTTTTATATTTTTTTGATAT
1 TTT-ATA-ATTTTTATAATTTTTATAAATTTTTGATAT
*
40629482 TTT-TACTATTTTTATAATTTTT-T---TTTCTGAT-T
1 TTTATA--ATTTTTATAATTTTTATAAATTTTTGATAT
40629514 TTTATAATTTTT-TAATATTTTA
1 TTTATAATTTTTATAAT-TTTTA
40629536 ATGGGAAAAA
Statistics
Matches: 107, Mismatches: 8, Indels: 33
0.72 0.05 0.22
Matches are distributed among these distances:
30 4 0.04
31 10 0.09
32 4 0.04
33 9 0.08
35 2 0.02
36 8 0.07
37 23 0.21
38 31 0.29
39 15 0.14
40 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (36 bp):
TTTATAATTTTTATAATTTTTATAAATTTTTGATAT
Found at i:40629476 original size:29 final size:29
Alignment explanation
Indices: 40629444--40629505 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
40629434 TTTAAATCAA
*
40629444 TTTTCATATATTTT-TTAATTTTTAT-ATTT
1 TTTTCATAT-TTTTACT-ATTTTTATAATTT
*
40629473 TTTTGATATTTTTACTATTTTTATAATTT
1 TTTTCATATTTTTACTATTTTTATAATTT
40629502 TTTT
1 TTTT
40629506 TTCTGATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.73
Consensus pattern (29 bp):
TTTTCATATTTTTACTATTTTTATAATTT
Found at i:40629514 original size:22 final size:21
Alignment explanation
Indices: 40629481--40629526 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
40629471 TTTTTTGATA
40629481 TTTTTACTATTTTTATAATTT
1 TTTTTACTATTTTTATAATTT
*
40629502 TTTTTTCTGATTTTTATAATTT
1 TTTTTACT-ATTTTTATAATTT
40629524 TTT
1 TTT
40629527 AATATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTACTATTTTTATAATTT
Found at i:40629525 original size:9 final size:9
Alignment explanation
Indices: 40629272--40629503 Score: 100
Period size: 9 Copynumber: 24.6 Consensus size: 9
40629262 TCAATTCAGG
*
40629272 TTTTTATGA
1 TTTTTATAA
40629281 TTTTATATAAA
1 TTTT-TAT-AA
* *
40629292 TTTTAATAC
1 TTTTTATAA
**
40629301 TTTTTATTC
1 TTTTTATAA
*
40629310 TTTTTATGA
1 TTTTTATAA
*
40629319 TTTTATAGAA
1 TTTT-TATAA
*
40629329 TTTTAATACA
1 TTTTTATA-A
40629339 TTTTTATGAA
1 TTTTTAT-AA
* *
40629349 ATTTTAAATA
1 TTTTTATA-A
40629359 TGTTTTATTAA
1 T-TTTTA-TAA
40629370 --TTTATAA
1 TTTTTATAA
*
40629377 TTTATTA-GA
1 TTT-TTATAA
40629386 TTTATTAT-A
1 TTT-TTATAA
*
40629395 TTTTTGATAG
1 TTTTT-ATAA
*
40629405 TATTTATTAA
1 TTTTTA-TAA
40629415 TTTTTATAA
1 TTTTTATAA
*
40629424 TTTTTAAAA
1 TTTTTATAA
*
40629433 TTTTAAATCAA
1 TTTT-TAT-AA
*
40629444 TTTTCATATA
1 TTTTTATA-A
40629454 TTTTT-TAA
1 TTTTTATAA
40629462 TTTTTAT-A
1 TTTTTATAA
*
40629470 TTTTTTTGATA
1 TTTTTAT-A-A
40629481 TTTTTACT-A
1 TTTTTA-TAA
40629490 TTTTTATAA
1 TTTTTATAA
40629499 TTTTT
1 TTTTT
40629504 TTTTCTGATT
Statistics
Matches: 171, Mismatches: 28, Indels: 48
0.69 0.11 0.19
Matches are distributed among these distances:
7 3 0.02
8 20 0.12
9 74 0.43
10 48 0.28
11 24 0.14
12 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:40629563 original size:30 final size:30
Alignment explanation
Indices: 40629522--40629581 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
40629512 TTTTTATAAT
* *
40629522 TTTTTAATATTTTAATGGGAAAAATATTAG
1 TTTTCAATATTTTAATGAGAAAAATATTAG
40629552 TTTTCAATATTTTAATGAGAAAAATATTAG
1 TTTTCAATATTTTAATGAGAAAAATATTAG
40629582 ATTAACCCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.45
Consensus pattern (30 bp):
TTTTCAATATTTTAATGAGAAAAATATTAG
Found at i:40630420 original size:29 final size:29
Alignment explanation
Indices: 40630387--40630443 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
40630377 AAAGTTTAAG
40630387 ATTTTTTTACTTTT-AGAATTTAGTCTTT
1 ATTTTTTTACTTTTAAGAATTTAGTCTTT
* *
40630415 ATTTTTTTATTTTTAATAATTTAGTCTTT
1 ATTTTTTTACTTTTAAGAATTTAGTCTTT
40630444 TTACTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (29 bp):
ATTTTTTTACTTTTAAGAATTTAGTCTTT
Done.