Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 126 of 295
Found at i:43171803 original size:2 final size:2
Alignment explanation
Indices: 43171796--43171820 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
43171786 CAAATGTAAA
43171796 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
43171821 ACTTAAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:43201863 original size:119 final size:120
Alignment explanation
Indices: 43201656--43201879 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
43201646 CTACTCGTTC
*
43201656 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
1 AAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
* *
43201721 TTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
66 TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
* * ** *
43201776 AAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 AAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* * *
43201838 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
43201880 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 4 0.04
119 65 0.72
120 21 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
Found at i:43201879 original size:40 final size:40
Alignment explanation
Indices: 43201655--43201879 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
43201645 GCTACTCGTT
* *
43201655 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
43201695 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43201735 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43201775 TAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
43201814 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
43201855 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43201880 CATCATTCGA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:43207979 original size:27 final size:27
Alignment explanation
Indices: 43207942--43208145 Score: 259
Period size: 27 Copynumber: 7.5 Consensus size: 27
43207932 TAAATTGTAC
43207942 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
43207969 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
43207996 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
43208022 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
43208050 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
43208078 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
43208105 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
43208132 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
43208146 AGACTCAATA
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 130 0.84
28 24 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43213312 original size:119 final size:120
Alignment explanation
Indices: 43213104--43213328 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
43213094 GCTACTCGTT
*
43213104 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
43213169 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
43213224 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATTCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * * *
43213286 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 AGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
43213329 CATCATTCGA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:43213328 original size:40 final size:40
Alignment explanation
Indices: 43213085--43213328 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
43213075 CGGAATTTAA
** *
43213085 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
43213125 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43213165 CCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
43213205 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43213244 CCGGA-ATTAGTATCTCGCACAAATTCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
43213284 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
43213324 CCGGA
1 CCGGA
43213329 CATCATTCGA
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 131 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:43216463 original size:28 final size:28
Alignment explanation
Indices: 43216423--43216485 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
43216413 GTCATTATCA
43216423 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
43216451 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
43216479 ACCCCAT
1 ACCCCAT
43216486 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:43221799 original size:28 final size:28
Alignment explanation
Indices: 43221759--43221821 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
43221749 GTCATTATCA
43221759 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
43221787 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
*
43221815 ACTCCAT
1 ACCCCAT
43221822 TACTATGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:43224415 original size:6 final size:6
Alignment explanation
Indices: 43224404--43224433 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
43224394 ATTTTATTTT
43224404 AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA
43224434 TTTAAATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:43230328 original size:39 final size:39
Alignment explanation
Indices: 43230272--43230473 Score: 278
Period size: 39 Copynumber: 5.2 Consensus size: 39
43230262 TTTAAGCCGT
* * *
43230272 GATATAATACCAGCACGAATGCCTTCGGGGCTTAGCCTG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* *
43230311 GATATAACACCAACACGAATGCCTTCGGGGCTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
** * *
43230350 GATATAACACCCTCACAAATGCCTTCGGGACTTAGCCCA
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* *
43230389 GATATAACACCAGCATGAATGCCTTCGGAACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* *
43230428 AATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
*
43230467 AATATAA
1 GATATAA
43230474 TTCTCCATTA
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 145 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (39 bp):
GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
Found at i:43237430 original size:26 final size:26
Alignment explanation
Indices: 43237394--43237445 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
43237384 ATCAAACGAA
43237394 GCATGCACTAAGTTATATTTCATGCT
1 GCATGCACTAAGTTATATTTCATGCT
43237420 GCATGCACTAAGTTATATTTCATGCT
1 GCATGCACTAAGTTATATTTCATGCT
43237446 TACATTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (26 bp):
GCATGCACTAAGTTATATTTCATGCT
Found at i:43239318 original size:15 final size:15
Alignment explanation
Indices: 43239300--43239330 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
43239290 TTGTGGCAAA
43239300 TCAACTCCATCACAC
1 TCAACTCCATCACAC
43239315 TCAACTCCATCACAC
1 TCAACTCCATCACAC
43239330 T
1 T
43239331 TAAATCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.45, G:0.00, T:0.23
Consensus pattern (15 bp):
TCAACTCCATCACAC
Found at i:43241242 original size:44 final size:44
Alignment explanation
Indices: 43241175--43241290 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
43241165 CATGGCATAG
* *
43241175 GATTTCGATATATGTGTGTGAGTAAGACCATGGCATCGATATGT
1 GATTTCGATATATGTGTGCGAGTAAGACCATGGCAACGATATGT
* *
43241219 TATTTCGATATATGTGTGCGAGTAAGACCATGTCAACGATATGT
1 GATTTCGATATATGTGTGCGAGTAAGACCATGGCAACGATATGT
* *
43241263 GATTTTGATATATGTGTACGAGTAAGAC
1 GATTTCGATATATGTGTGCGAGTAAGAC
43241291 ACTATCTGGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.34
Consensus pattern (44 bp):
GATTTCGATATATGTGTGCGAGTAAGACCATGGCAACGATATGT
Found at i:43249166 original size:30 final size:30
Alignment explanation
Indices: 43249132--43249200 Score: 129
Period size: 31 Copynumber: 2.3 Consensus size: 30
43249122 TTTCTCAGAT
43249132 TTTTAGGTAAGCATATATTTAGCCAATTTA
1 TTTTAGGTAAGCATATATTTAGCCAATTTA
43249162 TTTTAGGGTAAGCATATATTTAGCCAATTTA
1 TTTTA-GGTAAGCATATATTTAGCCAATTTA
43249193 TTTTAGGT
1 TTTTAGGT
43249201 TTCATAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 8 0.21
31 30 0.79
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (30 bp):
TTTTAGGTAAGCATATATTTAGCCAATTTA
Found at i:43249685 original size:14 final size:14
Alignment explanation
Indices: 43249668--43249701 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
43249658 AAGAAAATGT
43249668 TTATTTGTAGTGTA
1 TTATTTGTAGTGTA
43249682 TTATTTGTAGTGTA
1 TTATTTGTAGTGTA
43249696 TTATTT
1 TTATTT
43249702 ATCTTATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (14 bp):
TTATTTGTAGTGTA
Found at i:43250531 original size:160 final size:160
Alignment explanation
Indices: 43250246--43250553 Score: 388
Period size: 160 Copynumber: 1.9 Consensus size: 160
43250236 TGGCATACCA
* * * **
43250246 TCCTTTTTTGGCTTCTAGTTCTTGTACTCGTACCAGACTGTGGGAAAAAAAATCACAACCCCAAA
1 TCCTTTTTTGGATTCTAGTTCTTGTACTCGTACCAAACTGAGACAAAAAAAATCACAACCCCAAA
43250311 TTAGATTTAAATATTTCAAAACTTGACAATATAAAATATTTTACAATATACCTATGATCCAGTTC
66 TTAGATTTAAATATTTCAAAACTTGACAATATAAAATATTTTACAATATACCTATGATCCAGTTC
* *
43250376 TGTTAGGTTGAATGCATGGTCTTCTATTGT
131 TGTTAGCTTGAAGGCATGGTCTTCTATTGT
* *
43250406 TCCTTTTTTGGATT-TAGTTCTTGTACTCGTGCCAAATTGAGACAATAAAAAATCACAACCCCAA
1 TCCTTTTTTGGATTCTAGTTCTTGTACTCGTACCAAACTGAGACAA-AAAAAATCACAACCCCAA
*** * * ** * * *
43250470 ATTAGATTTAAATATTTTGGAACTTGATAGTGA-AAAA-ATGTTTATGATTTACTTGTGATCCAG
65 ATTAGATTTAAATATTTCAAAACTTGACAAT-ATAAAATAT-TTTACAATATACCTATGATCCAG
*
43250533 TTGTGTTAGCTTGAAGGCATG
128 TTCTGTTAGCTTGAAGGCATG
43250554 ATCATTTGTT
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
159 27 0.22
160 97 0.78
161 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (160 bp):
TCCTTTTTTGGATTCTAGTTCTTGTACTCGTACCAAACTGAGACAAAAAAAATCACAACCCCAAA
TTAGATTTAAATATTTCAAAACTTGACAATATAAAATATTTTACAATATACCTATGATCCAGTTC
TGTTAGCTTGAAGGCATGGTCTTCTATTGT
Found at i:43251499 original size:31 final size:31
Alignment explanation
Indices: 43251461--43251521 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
43251451 ATTTACAAAA
43251461 CATCAGTAATAAATTCGTGCAAAATAAATAG
1 CATCAGTAATAAATTCGTGCAAAATAAATAG
* *
43251492 CATCAGTAATTAATTGGTGCAAAATAAATA
1 CATCAGTAATAAATTCGTGCAAAATAAATA
43251522 TTATTATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.48, C:0.11, G:0.13, T:0.28
Consensus pattern (31 bp):
CATCAGTAATAAATTCGTGCAAAATAAATAG
Found at i:43254571 original size:47 final size:47
Alignment explanation
Indices: 43254517--43255308 Score: 1332
Period size: 47 Copynumber: 16.6 Consensus size: 47
43254507 GTATATTTGA
*
43254517 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43254564 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
43254613 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43254660 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
43254709 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
43254756 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43254803 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
43254852 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43254899 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
43254948 ATGAATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43254995 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
43255044 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
43255091 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
43255138 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
43255185 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
43255232 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
43255279 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
43255309 TCCCGAAGGG
Statistics
Matches: 707, Mismatches: 28, Indels: 20
0.94 0.04 0.03
Matches are distributed among these distances:
47 480 0.68
49 227 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:43254625 original size:96 final size:94
Alignment explanation
Indices: 43254517--43255308 Score: 1332
Period size: 96 Copynumber: 8.3 Consensus size: 94
43254507 GTATATTTGA
*
43254517 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
43254582 ATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
43254613 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
43254678 ATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
43254709 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
43254774 ATATGTGATAAGGCCTAATAGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
43254803 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
43254868 ATATATGTGATAAGGCCGAATGGCCAATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
43254899 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
43254964 ATATATGTGATAAGGCCTAATAGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
43254995 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
43255060 ATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
43255091 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
43255156 ATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
*
43255185 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * *
43255250 ATATGTGACAGGGCCGAGTGGCCAATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
* *
43255279 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
43255309 TCCCGAAGGG
Statistics
Matches: 667, Mismatches: 27, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 239 0.36
96 428 0.64
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:43254936 original size:239 final size:239
Alignment explanation
Indices: 43254517--43255308 Score: 1398
Period size: 239 Copynumber: 3.3 Consensus size: 239
43254507 GTATATTTGA
43254517 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
43254582 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
43254647 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
43254712 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
43254756 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
43254821 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
43254886 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
43254951 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTG
196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
43254995 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
43255059 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
64 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * *
43255123 CTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
129 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
43255186 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTG
194 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * * * * * *
43255232 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
43255297 A-A-ATGTGATAAG
66 ATATATGTGATAAG
43255309 TCCCGAAGGG
Statistics
Matches: 535, Mismatches: 14, Indels: 12
0.95 0.02 0.02
Matches are distributed among these distances:
235 51 0.10
236 1 0.00
237 93 0.17
239 344 0.64
241 46 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (239 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
Found at i:43262829 original size:25 final size:25
Alignment explanation
Indices: 43262801--43262849 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
43262791 TACAATCTAT
* * *
43262801 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAATCTCAGGATATACTAC
*
43262826 CTATAGCAATTTCAGGATATACTA
1 CTATAGCAATCTCAGGATATACTA
43262850 TCAAAAATAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (25 bp):
CTATAGCAATCTCAGGATATACTAC
Found at i:43284622 original size:28 final size:29
Alignment explanation
Indices: 43284585--43284678 Score: 127
Period size: 29 Copynumber: 3.3 Consensus size: 29
43284575 AAGTCTACAA
* * *
43284585 ACATGCATATGGCCCACTAAGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
43284613 TCATTCATATAGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
43284642 ACATTCATATGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
43284671 ACATTCAT
1 ACATTCAT
43284679 GTACATGCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 19 0.33
29 38 0.67
ACGTcount: A:0.33, C:0.32, G:0.11, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:43284923 original size:16 final size:16
Alignment explanation
Indices: 43284891--43284925 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
43284881 ATAGCCAAAC
*
43284891 TTTCAGCTTTTTAGCA
1 TTTCAGCTTTTCAGCA
*
43284907 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCAGCA
43284923 TTT
1 TTT
43284926 GGGCTTTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:43297033 original size:23 final size:23
Alignment explanation
Indices: 43297007--43297053 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
43296997 CCTAAATTCC
43297007 AATTTAATCCCTAACCAAAACTA
1 AATTTAATCCCTAACCAAAACTA
43297030 AATTTAATCCCTAACCAAAACTA
1 AATTTAATCCCTAACCAAAACTA
43297053 A
1 A
43297054 CTTTGTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (23 bp):
AATTTAATCCCTAACCAAAACTA
Found at i:43297241 original size:25 final size:25
Alignment explanation
Indices: 43297207--43297256 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
43297197 TTTATTTTAC
*
43297207 AATCCAATCATTTTCTCAATTCTAA
1 AATCCAATCATTTTCTCAACTCTAA
43297232 AATCCAATCATTTTCTCAACTCTAA
1 AATCCAATCATTTTCTCAACTCTAA
43297257 CTTGAAATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (25 bp):
AATCCAATCATTTTCTCAACTCTAA
Found at i:43297466 original size:25 final size:26
Alignment explanation
Indices: 43297431--43297479 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
43297421 AAACCCTAGT
*
43297431 TTTTCCTTTCT-TTCTTTTTTTCTCCC
1 TTTTCCTTTCTCTT-TTTTCTTCTCCC
43297457 TTTT-CTTTCTCTTTTTTCTTCTC
1 TTTTCCTTTCTCTTTTTTCTTCTC
43297480 TATTTCGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTCCTTTCTCTTTTTTCTTCTCCC
Found at i:43297623 original size:23 final size:22
Alignment explanation
Indices: 43297591--43297637 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
43297581 CTTAAATAAT
* * *
43297591 AAGTAATGTATATAATTAGTAC
1 AAGTAATGTACATAAATACTAC
43297613 AAGTATATGTACATAAATACTAC
1 AAGTA-ATGTACATAAATACTAC
43297636 AA
1 AA
43297638 ATGTTATTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (22 bp):
AAGTAATGTACATAAATACTAC
Found at i:43299665 original size:12 final size:12
Alignment explanation
Indices: 43299648--43299672 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43299638 GCGGCACACG
43299648 CCCGTGTGGCCA
1 CCCGTGTGGCCA
43299660 CCCGTGTGGCCA
1 CCCGTGTGGCCA
43299672 C
1 C
43299673 GAAACCACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (12 bp):
CCCGTGTGGCCA
Found at i:43300917 original size:2 final size:2
Alignment explanation
Indices: 43300910--43300945 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
43300900 ATACTCAAAC
* *
43300910 AT AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43300946 CAAATTAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43308614 original size:48 final size:47
Alignment explanation
Indices: 43308562--43308936 Score: 200
Period size: 48 Copynumber: 7.9 Consensus size: 47
43308552 GCCATATTAT
43308562 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * * *
43308609 CGAGAGCCAGTGTAAGA-TATGTCTAGAACAT-GCATCGGC-TTCA-A
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
*
43308653 GATGTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGC--T-ACGA
1 GA-G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
* * * * *
43308699 GATGTGTCAGTGTAAGAACATGTCTGGGACATGGCACCAGCACGTAT-AGA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TGAGA
* ** * ** * *
43308749 G-GTGTGAGTGTAAGACCATGTCTGGGACTTGGCATTAGCATGGATA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
** * * * * **
43308795 TCTGAGAGTTAGTGTAAGACCATGTCCGGGACATGGCGTCGGCCTCGATTTT
1 ---GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GA
* * * *
43308847 GATAGTCAGTGGAAGACCATGTCTGGGACATGGCATCGAC-TTGATG-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
* * * * *
43308893 GATAAGCTAGTGTAAGACCATGTCTGGAACATCGCATCAGCATT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
43308937 ATACCCTATG
Statistics
Matches: 260, Mismatches: 46, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 14 0.05
45 18 0.07
46 54 0.21
47 42 0.16
48 55 0.21
49 35 0.13
50 37 0.14
51 2 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
Found at i:43308663 original size:46 final size:46
Alignment explanation
Indices: 43308565--43308731 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
43308555 ATATTATGAG
*
43308565 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-GAGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTCGAGATGTA
* * * *
43308612 GAGCCAGTGTAAGATATGTCTAGAACATGCATCGGCTTCAAGATGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTA
* *
43308659 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCTACGAGATGT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTA
*
43308704 -GTCAGTGTAAGAACATGTCTGGGACATG
1 AGCCAGTGTAAG-ACATGTCTGGGACATG
43308732 GCACCAGCAC
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
44 10 0.10
45 18 0.17
46 51 0.49
47 12 0.12
48 13 0.12
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTA
Found at i:43308729 original size:45 final size:45
Alignment explanation
Indices: 43308523--43308731 Score: 172
Period size: 46 Copynumber: 4.5 Consensus size: 45
43308513 TTTGTGTGCT
** * * * ** *
43308523 AGTGTAAGTTATGTCTGGGAGATGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATG-TAGCC
* *
43308569 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-G-AGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--T-ACAAGATGTAGCC
* * * *
43308617 AGTGTAAGATATGTCTAGAACATGCATCGGCTTCAAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT-AGCC
* * *
43308663 AGTGTAAGACATGTCTGGGACATGCATTGGCTACGAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGCC
43308707 AGTGTAAGAACATGTCTGGGACATG
1 AGTGTAAG-ACATGTCTGGGACATG
43308732 GCACCAGCAC
Statistics
Matches: 134, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.02
44 12 0.09
45 16 0.12
46 55 0.41
47 23 0.17
48 21 0.16
50 1 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGCC
Found at i:43308875 original size:49 final size:50
Alignment explanation
Indices: 43308704--43308883 Score: 179
Period size: 50 Copynumber: 3.7 Consensus size: 50
43308694 TACGAGATGT
* * * *
43308704 GTCAGTGTAAGAACATGTCTGGGACATGGCACCAGCA-CG-TAT-AGAGGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATATCTGA-GA
* * * *
43308752 GTGAGTGTAAGACCATGTCTGGGACTTGGCATTAGCATGGATATCTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATATCTGAGA
* * * * * * *
43308802 GTTAGTGTAAGACCATGTCCGGGACATGGCGTCGGCCTCGAT-TTTGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATATCTGAGA
*
43308851 GTCAGTGGAAGACCATGTCTGGGACATGGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
43308884 GACTTGATGG
Statistics
Matches: 107, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
48 32 0.30
49 35 0.33
50 38 0.36
51 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATATCTGAGA
Found at i:43316724 original size:46 final size:47
Alignment explanation
Indices: 43316605--43316916 Score: 191
Period size: 46 Copynumber: 6.6 Consensus size: 47
43316595 GACGAGAACT
* * * **
43316605 AGTGTAAGA-CATGTCTAGGATAT-GCATCGGCCT-CGAGATGTAAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAGATGT-AGTC
* *
43316651 AGTGTAAGA-CATGTCT-GGAGCAT-GCATCGGCTACGAGATGT-GTT
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCAGCTACGAGATGTAGTC
* * *
43316695 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTATAGAGGT-GTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACG---AGATGTAGTC
* * * *
43316743 AGTGTAAGACAATGTCTTGGACATGGCATCAGC-ACGGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTAC-GAGATGT-AG-TC
* * **
43316792 TAGTGTAAGACTATGTCTGGGACATGGCATCAGCTTCGATTTCGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAT-G-TAGTC
** * * *
43316842 AGTGTAAGATGATGTCTTGGACATGGCATCAACT-TGATGGATG-AG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGA--GATGTAGTC
*
43316888 AATGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
43316917 TGGCATTATA
Statistics
Matches: 219, Mismatches: 29, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 74 0.34
47 2 0.01
48 42 0.19
49 32 0.15
50 37 0.17
51 4 0.02
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGATGTAGTC
Found at i:43316751 original size:48 final size:46
Alignment explanation
Indices: 43316651--43316921 Score: 165
Period size: 48 Copynumber: 5.7 Consensus size: 46
43316641 GATGTAAACC
*
43316651 AGTGTAAGA-CATGTCT-GGAGCAT-GCATCGGCTACG--AGATGTGTT
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGGC-ACGATAGAGGTG-T
43316695 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-ATAGAGGTGT
* * * * *
43316742 GAGTGTAAGACAATGTCTTGGACATGGCATCAGCACGGATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATA-GAG-GTG-T
* * * *** *
43316793 AGTGTAAGACTATGTCTGGGACATGGCATCAGCTTCGATTTCGATAGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATAGAGGT-GT
** * ** ** * * * *
43316841 CAGTGTAAGATGATGTCTTGGACATGGCATCAACTTGATGGATGAGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGTGT
* *
43316888 AATGTAAGACCATGTCTGGGACATGGCATTGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
43316922 TTATACCCTA
Statistics
Matches: 179, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
44 9 0.05
45 13 0.07
46 37 0.21
47 2 0.01
48 46 0.26
49 34 0.19
50 36 0.20
51 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGTGT
Found at i:43316815 original size:50 final size:47
Alignment explanation
Indices: 43316694--43316916 Score: 166
Period size: 48 Copynumber: 4.6 Consensus size: 47
43316684 CGAGATGTGT
* * * *
43316694 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTG
1 TAGTGTAAGACAATGTCTGGGACATGGCATCAGCACGGATAGAGGAG
* *
43316741 TGAGTGTAAGACAATGTCTTGGACATGGCATCAGCACGGATATGTGAGAG
1 T-AGTGTAAGACAATGTCTGGGACATGGCATCAGCACGGATA-GAG-GAG
* * * *
43316791 CTAGTGTAAGACTATGTCTGGGACATGGCATCAGCTTC-GATTTCGA-TAG
1 -TAGTGTAAGACAATGTCTGGGACATGGCATCAGC-ACGGA--TAGAGGAG
** * * * *
43316840 TCAGTGTAAGATGATGTCTTGGACATGGCATCA--ACTTGATGGATGAG
1 T-AGTGTAAGACAATGTCTGGGACATGGCATCAGCAC-GGATAGAGGAG
* * *
43316887 CAATGTAAGACCATGTCTGGGACATGGCAT
1 TAGTGTAAGACAATGTCTGGGACATGGCAT
43316917 TGGCATTATA
Statistics
Matches: 142, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
46 29 0.20
47 3 0.02
48 39 0.27
49 32 0.23
50 35 0.25
51 3 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (47 bp):
TAGTGTAAGACAATGTCTGGGACATGGCATCAGCACGGATAGAGGAG
Found at i:43325055 original size:46 final size:47
Alignment explanation
Indices: 43324646--43325060 Score: 207
Period size: 48 Copynumber: 8.8 Consensus size: 47
43324636 GGATATATCA
*
43324646 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-G
** * * * *
43324696 CTAATGCATGTCCCAGACAT-GTCTTACACTAG----CAAAACTCTTAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-T-GTGG
* * * *
43324740 CCGATG-AGTGTCCCAGACA-CGTCTTATACTGGCTATCTC-T-GTCGAGG
1 CCGATGCA-TGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GTGG
* * ** * * * *
43324787 CCAATAG-ATGCCCCAGACAT-GTCTTACTGTGGCACTCAT-CTCTGTA
1 CCGAT-GCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG-G
* * * * * * *
43324833 CCGATGCCATGTCCCAGACCTGGTCTTACTCTGGCACTTAT-CTCTGTA
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG-G
* *
43324881 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
* * * * ** *
43324929 CTGATGCATGTCCCAAACAT-GTCTTACACTAGCCCTTGT-CTAGAT-G
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TGG
*
43324975 CCGATGAAATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
* * *
43325023 CCGAAGCATGTCCTAGACAT-GTCTTACACTGGCGCTCA
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCA
43325061 AATCACCCAA
Statistics
Matches: 281, Mismatches: 60, Indels: 52
0.72 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 30 0.11
45 6 0.02
46 44 0.16
47 77 0.27
48 99 0.35
49 18 0.06
50 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
Found at i:43343887 original size:27 final size:27
Alignment explanation
Indices: 43343826--43343888 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
43343816 CCTATGGGAA
* *
43343826 AGGCGACACAAATGGTGCCAATCTTGT
1 AGGCGGCACAAATGGTGCCAATATTGT
*
43343853 AGGCGGCACAAGTGGTGCCAATATTGT
1 AGGCGGCACAAATGGTGCCAATATTGT
*
43343880 AGGTGGCAC
1 AGGCGGCAC
43343889 TAGTTTCCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.21
Consensus pattern (27 bp):
AGGCGGCACAAATGGTGCCAATATTGT
Found at i:43350312 original size:32 final size:31
Alignment explanation
Indices: 43350235--43350316 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
43350225 CTTCCTGCAT
* * *
43350235 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATACAACCAAAAACAACAAATATAGCA
* * * *
43350266 TAAAATGCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
43350297 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
43350317 TTAATTCAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 26 0.62
32 16 0.38
ACGTcount: A:0.59, C:0.20, G:0.06, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAGCA
Found at i:43350600 original size:21 final size:21
Alignment explanation
Indices: 43350548--43350641 Score: 90
Period size: 21 Copynumber: 4.6 Consensus size: 21
43350538 TCTGCTGCCA
43350548 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
43350569 TCACT-CTTGCCTCTGCCTCTC
1 TCGCTGC-TGCCTCTGCCTCCC
*
43350590 TCGCTGCTGCCGT-TACCTCCC
1 TCGCTGCTGCC-TCTGCCTCCC
43350611 TCGCTGCTG---CTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
43350629 TCTCTGCTACCTC
1 TCGCTGCTGCCTC
43350642 CGCTCTAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 14 0.24
20 1 0.02
21 41 0.71
22 2 0.03
ACGTcount: A:0.03, C:0.49, G:0.16, T:0.32
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:43351267 original size:18 final size:18
Alignment explanation
Indices: 43351235--43351272 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
43351225 TACAATATAG
43351235 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
43351254 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
43351271 TA
1 TA
43351273 TTTGAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:43356229 original size:9 final size:9
Alignment explanation
Indices: 43356215--43356574 Score: 120
Period size: 9 Copynumber: 41.1 Consensus size: 9
43356205 TATGTATTAC
*
43356215 GTAAGTTAA
1 GTAAGTTAT
*
43356224 GTAAGTTTT
1 GTAAGTTAT
* *
43356233 GTAACTTTT
1 GTAAGTTAT
*
43356242 GTAAGTTTT
1 GTAAGTTAT
43356251 GTAAGTTAT
1 GTAAGTTAT
43356260 GTAAGTTAT
1 GTAAGTTAT
* * *
43356269 AATATGATAT
1 -GTAAGTTAT
* *
43356279 -AAACTTAT
1 GTAAGTTAT
* *
43356287 GTAAGGTGT
1 GTAAGTTAT
43356296 GTAAGTTAT
1 GTAAGTTAT
*
43356305 GTAAATTAT
1 GTAAGTTAT
* **
43356314 GATATGAAAT
1 G-TAAGTTAT
* *
43356324 AT-ATTTAT
1 GTAAGTTAT
* *
43356332 -TTA-TTAC
1 GTAAGTTAT
43356339 GTAAGTTAT
1 GTAAGTTAT
43356348 GTAAGTTAT
1 GTAAGTTAT
* *
43356357 AT-ATTTAT
1 GTAAGTTAT
43356365 GT-A-TTAT
1 GTAAGTTAT
* *
43356372 GTAAATTTT
1 GTAAGTTAT
43356381 GTAAGTTAT
1 GTAAGTTAT
43356390 GTAAGTTAT
1 GTAAGTTAT
* *
43356399 GATATGATAT
1 G-TAAGTTAT
* *
43356409 AT-ATTTAT
1 GTAAGTTAT
**
43356417 GTAAGGAAT
1 GTAAGTTAT
43356426 GTAAGTTAT
1 GTAAGTTAT
*
43356435 GTAAATTAT
1 GTAAGTTAT
* **
43356444 GATATGAAAT
1 G-TAAGTTAT
* *
43356454 AT-ATTTAT
1 GTAAGTTAT
* *
43356462 -TTA-TTAC
1 GTAAGTTAT
43356469 GTAAGTTAT
1 GTAAGTTAT
43356478 GTAAGTTAT
1 GTAAGTTAT
* *
43356487 AT-ATTTAT
1 GTAAGTTAT
*
43356495 AT-A-TTAT
1 GTAAGTTAT
*
43356502 GTAAGTTTT
1 GTAAGTTAT
43356511 GTAAGTTAT
1 GTAAGTTAT
*
43356520 GTGAGTTAT
1 GTAAGTTAT
* *
43356529 GATATGATAT
1 G-TAAGTTAT
* *
43356539 -AAATTTAT
1 GTAAGTTAT
**
43356547 GTAAGGAAT
1 GTAAGTTAT
43356556 GTAAGTTAT
1 GTAAGTTAT
*
43356565 GTAAATTAT
1 GTAAGTTAT
43356574 G
1 G
43356575 ATATCAAATA
Statistics
Matches: 251, Mismatches: 82, Indels: 36
0.68 0.22 0.10
Matches are distributed among these distances:
7 19 0.08
8 39 0.16
9 168 0.67
10 25 0.10
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:43356359 original size:33 final size:33
Alignment explanation
Indices: 43356322--43356647 Score: 149
Period size: 33 Copynumber: 10.0 Consensus size: 33
43356312 ATGATATGAA
*
43356322 ATATATTTATTTATTACGTAAGTTATGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
* * *
43356355 ATATATTTATGTATTATGTAAATTTTGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
* * * * * *
43356388 ATGTAAGTTATGATATGATATATATTTATGTAAG--
1 ATAT-ATTTAT-TTATTATGTA-AGTTATGTAAGTT
* * * * **
43356422 -GA-ATGTA---AGTTATGTAAATTATGATATGAA
1 ATATATTTATTTA-TTATGTAAGTTATG-TAAGTT
*
43356452 ATATATTTATTTATTACGTAAGTTATGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
* *
43356485 ATATATTTATATATTATGTAAGTTTTGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
* * * * * *
43356518 ATGTGAGTTATGATATGATATAAATTTATGTAAG--
1 ATAT-ATTTAT-TTATTATGT-AAGTTATGTAAGTT
* * * ****
43356552 -GA-ATGTA---AGTTATGTAAATTATGATATCAA
1 ATATATTTATTTA-TTATGTAAGTTATG-TAAGTT
*
43356582 ATATATTTATTTATTACGTAAGTTATGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
* *
43356615 ATATATTTATATATTATGTAAGTTTTGTAAGTT
1 ATATATTTATTTATTATGTAAGTTATGTAAGTT
43356648 TTGTAAATTA
Statistics
Matches: 214, Mismatches: 55, Indels: 48
0.68 0.17 0.15
Matches are distributed among these distances:
27 15 0.07
28 14 0.07
31 8 0.04
32 8 0.04
33 100 0.47
34 34 0.16
35 16 0.07
36 19 0.09
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (33 bp):
ATATATTTATTTATTATGTAAGTTATGTAAGTT
Found at i:43356404 original size:130 final size:130
Alignment explanation
Indices: 43356241--43356675 Score: 762
Period size: 130 Copynumber: 3.3 Consensus size: 130
43356231 TTGTAACTTT
* * **
43356241 TGTAAGTTTTGTAAGTTATGTAAGTTATAATATGATATAAACTTATGTAAGGTGTGTAAGTTATG
1 TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGAATGTAAGTTATG
*
43356306 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATGTATTA
66 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
* *
43356371 TGTAAATTTTGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGGAATGTAAGTTATG
1 TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGAATGTAAGTTATG
43356436 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
66 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
*
43356501 TGTAAGTTTTGTAAGTTATGTGAGTTATGATATGATATAAATTTATGTAAGGAATGTAAGTTATG
1 TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGAATGTAAGTTATG
*
43356566 TAAATTATGATATCAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
66 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
* * *
43356631 TGTAAGTTTTGTAAGTTTTGTAAATTATGATATGATATATATTTA
1 TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTA
43356676 ACATTAAGAT
Statistics
Matches: 290, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 290 1.00
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (130 bp):
TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGAATGTAAGTTATG
TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
Found at i:43359187 original size:43 final size:43
Alignment explanation
Indices: 43359127--43359339 Score: 291
Period size: 43 Copynumber: 4.8 Consensus size: 43
43359117 TTTATTGGAA
*
43359127 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* * * *
43359170 AAAAACACCTCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
43359213 AAAAGCGTCGCTAAAGGTCAAGGCTTTTAGCGGCTTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
43359256 AAAAGCGCCGCTAAAGGTCAAGGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCT--A----AA-GGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
43359306 AAAAGCGCCGCTAAAGGTCAAGGATTTTAGCGGC
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGC
43359340 ACTTTTTTTA
Statistics
Matches: 151, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
43 106 0.70
44 2 0.01
45 1 0.01
48 1 0.01
49 2 0.01
50 39 0.26
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:43359285 original size:50 final size:50
Alignment explanation
Indices: 43359228--43359328 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
43359218 CGTCGCTAAA
*
43359228 GGTCAAGGCTTTTAGCGGCTTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
1 GGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
43359278 GGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
1 GGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
43359328 G
1 G
43359329 ATTTTAGCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.23
Consensus pattern (50 bp):
GGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAG
Found at i:43360229 original size:37 final size:37
Alignment explanation
Indices: 43360171--43360319 Score: 271
Period size: 37 Copynumber: 4.0 Consensus size: 37
43360161 GCTCAGACGA
* * *
43360171 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
43360208 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
43360245 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
43360282 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
43360319 A
1 A
43360320 TTTCCAAGTT
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:43360588 original size:47 final size:47
Alignment explanation
Indices: 43360525--43361007 Score: 678
Period size: 47 Copynumber: 10.1 Consensus size: 47
43360515 ACACGTTTCG
* * * * ** *
43360525 CATTAGCCATTCGGCCTTACCACATAAATTCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
43360572 CATTGGCCATTTGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
43360619 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
43360666 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
43360713 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
43360766 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
43360813 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
43360860 CAGTGGCCATTCGGCCTTATCACACATACGCATTTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
43360907 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
43360958 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
43361005 CAT
1 CAT
43361008 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 32, Indels: 20
0.88 0.07 0.04
Matches are distributed among these distances:
47 307 0.78
49 1 0.00
51 44 0.11
53 42 0.11
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:43360900 original size:194 final size:192
Alignment explanation
Indices: 43360525--43361007 Score: 794
Period size: 194 Copynumber: 2.5 Consensus size: 192
43360515 ACACGTTTCG
* * * * *
43360525 CATTAGCCATTCGGCCTTA-C-CACATA-A-ATTCATGTTCATATTCATCACATTGGCCATTTGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
43360586 CCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
* *
43360651 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
131 TGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
43360713 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTC
43360778 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
64 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
43360843 CATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATTTTCACATTCATCA
129 CATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
43360907 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
43360972 CCTTATCACACATACGCATGTTCACATCCATCACAT
66 CCTTATCACACATACGCATGTTCACATTCATCACAT
43361008 AAAATCCTAA
Statistics
Matches: 274, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
188 18 0.07
189 1 0.00
192 81 0.30
193 1 0.00
194 173 0.63
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (192 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
TGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:43360932 original size:24 final size:24
Alignment explanation
Indices: 43360858--43360933 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
43360848 TCACATCCAT
*
43360858 CACAGTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
** ** *
43360882 CACATACG-CATT-TTCACAT-TCA
1 CACATTGGCCATTCGGC-CTTATCA
43360904 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
43360929 CACAT
1 CACAT
43360934 ATATATACGG
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
22 4 0.11
23 12 0.33
24 16 0.44
25 4 0.11
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:43368675 original size:9 final size:9
Alignment explanation
Indices: 43368564--43368665 Score: 125
Period size: 9 Copynumber: 11.4 Consensus size: 9
43368554 TATTTAAGTA
*
43368564 TTATGTAAG
1 TTATATAAG
*
43368573 TTATGTAAG
1 TTATATAAG
*
43368582 TTATAT-AT
1 TTATATAAG
*
43368590 TTATCTAAG
1 TTATATAAG
43368599 TTATATAAG
1 TTATATAAG
43368608 TTATATAAG
1 TTATATAAG
* *
43368617 TTATGTATG
1 TTATATAAG
43368626 TTATATAAG
1 TTATATAAG
*
43368635 TTATGTAAG
1 TTATATAAG
*
43368644 TTATATATG
1 TTATATAAG
43368653 TTATATAAG
1 TTATATAAG
43368662 TTAT
1 TTAT
43368666 GTAAATTATG
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
8 6 0.08
9 73 0.92
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.49
Consensus pattern (9 bp):
TTATATAAG
Found at i:43369029 original size:24 final size:24
Alignment explanation
Indices: 43368997--43369064 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
43368987 ACTTAAATGG
43368997 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
43369021 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
43369045 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
43369065 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:43373565 original size:15 final size:15
Alignment explanation
Indices: 43373545--43373576 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
43373535 AAATAATAAT
*
43373545 TTATATATATTTATC
1 TTATATACATTTATC
43373560 TTATATACATTTATC
1 TTATATACATTTATC
43373575 TT
1 TT
43373577 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:43374016 original size:18 final size:18
Alignment explanation
Indices: 43373993--43374043 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
43373983 TTACACCTTA
43373993 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
43374011 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
43374029 AATATATATATATAA
1 AATATATAT-TATAA
43374044 CAAGGGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:43374395 original size:41 final size:41
Alignment explanation
Indices: 43374349--43374702 Score: 521
Period size: 41 Copynumber: 8.6 Consensus size: 41
43374339 TTACTTTTTT
* * *
43374349 GCGGCGTTTTTCCATAAGCCCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
*
43374390 GCGGCGTTTTTCCATAAA-CGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCA-AAAGCGCCGCTAAAACCTCGGCCTATA
* *
43374431 GCGGCGTTTCTACAAAAGCGCCGCTAAAACCTCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
*
43374472 GCGGCGTTTTTCCAAAAGCGCTGCTAAAACCTCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
* * *
43374513 GCGACGTTTCTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
*
43374554 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCAGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
*
43374595 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
* * * * * *
43374636 GCAGCGTTTTTGCAGAAGCGCCACTAAAACCTCGACTTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
*
43374677 GCGGCGTTTTTCCAAAAGTGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
43374703 TTGTATAGTT
Statistics
Matches: 283, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
40 3 0.01
41 278 0.98
42 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGGCCTATA
Found at i:43374745 original size:41 final size:41
Alignment explanation
Indices: 43374709--43374797 Score: 124
Period size: 41 Copynumber: 2.2 Consensus size: 41
43374699 GCTATTGTAT
*
43374709 AGTTTTTAGCGGCGTTTGGGCCAAAAACACCACTATTGCTC
1 AGTTTTTAGCGGCGTTTGGACCAAAAACACCACTATTGCTC
* * **
43374750 AGTTTTTAGCGGCGTTTGGATCAAAAACGCTGCTATTGCTC
1 AGTTTTTAGCGGCGTTTGGACCAAAAACACCACTATTGCTC
*
43374791 TGTTTTT
1 AGTTTTT
43374798 TACGGTGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (41 bp):
AGTTTTTAGCGGCGTTTGGACCAAAAACACCACTATTGCTC
Found at i:43376230 original size:18 final size:18
Alignment explanation
Indices: 43376196--43376230 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
43376186 TAGATTTATT
*
43376196 TAATATATAATTTAAAAA
1 TAATATATAATTAAAAAA
43376214 TAATATA-AATTAAAAAA
1 TAATATATAATTAAAAAA
43376231 CAATCAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATATATAATTAAAAAA
Found at i:43376410 original size:26 final size:26
Alignment explanation
Indices: 43376346--43376417 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
43376336 AGAATTAGAT
* * *
43376346 AAAATTTAAAATATTGAAA-ATTATTT
1 AAAATTTGAAATCTT-AAATATTATTC
43376372 AAAATTTGAAATCTTAAATATTATTC
1 AAAATTTGAAATCTTAAATATTATTC
*
43376398 TAAATTTGAAATCTTTAAAT
1 AAAATTTGAAATC-TTAAAT
43376418 TTTGAAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 3 0.08
26 31 0.77
27 6 0.15
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (26 bp):
AAAATTTGAAATCTTAAATATTATTC
Found at i:43379622 original size:26 final size:26
Alignment explanation
Indices: 43379591--43379698 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
43379581 TGAAATGCCC
43379591 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
43379617 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* * *
43379643 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
43379669 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
43379695 ATCA
1 ATCA
43379699 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 3 0.04
26 69 0.93
27 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:43380958 original size:68 final size:68
Alignment explanation
Indices: 43380874--43381030 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
43380864 CTTAAAATTA
* * * *
43380874 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
43380938 ATGT
65 ATGT
* * * * * *
43380942 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGTTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
43381007 TGT
66 TGT
*
43381010 AGCTGTCCGAATATGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
43381031 TCACAGTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 3 0.04
68 72 0.95
69 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.42
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:43383739 original size:43 final size:43
Alignment explanation
Indices: 43383690--43383806 Score: 198
Period size: 43 Copynumber: 2.7 Consensus size: 43
43383680 GCATGAAACT
* *
43383690 CGGTGATATGTATTCGGGCCTTTGTGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
43383733 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
* *
43383776 CAGTGATGTGTATTCGGGTCTTCGTGCCTAG
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAG
43383807 CATAATGCCG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.11, C:0.21, G:0.33, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
Found at i:43384011 original size:29 final size:29
Alignment explanation
Indices: 43383978--43384079 Score: 84
Period size: 29 Copynumber: 3.5 Consensus size: 29
43383968 ATGATTAGAG
43383978 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTGTGTGTGCAAATTCCTTTAACCGA
* ** **
43384007 GCACTATGTGTGTG-AGA-T-CGGTAATTGA
1 GCAC--TGTGTGTGCAAATTCCTTTAACCGA
* *
43384035 GGCACTGTGTGTACGAATTCCTTTAACCGA
1 -GCACTGTGTGTGCAAATTCCTTTAACCGA
*
43384065 GCACTATGTGTGCAA
1 GCACTGTGTGTGCAA
43384080 GATCGGTAAT
Statistics
Matches: 52, Mismatches: 15, Indels: 12
0.66 0.19 0.15
Matches are distributed among these distances:
27 7 0.13
28 7 0.13
29 22 0.42
30 8 0.15
31 8 0.15
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCAAATTCCTTTAACCGA
Found at i:43384097 original size:29 final size:29
Alignment explanation
Indices: 43384007--43384106 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
43383997 CTTTAACCGA
**
43384007 GCACTATGTGTGTGAGATCGGTAATTGAG
1 GCACTATGTGTGCAAGATCGGTAATTGAG
* * * ** **
43384036 GCACTGTGTGTACGAA-TTCCTTTAACCGA-
1 GCACTATGTGTGC-AAGAT-CGGTAATTGAG
43384065 GCACTATGTGTGCAAGATCGGTAATTGAG
1 GCACTATGTGTGCAAGATCGGTAATTGAG
*
43384094 GCACTGTGTGTGC
1 GCACTATGTGTGC
43384107 GAGTTCTTCA
Statistics
Matches: 50, Mismatches: 17, Indels: 8
0.67 0.23 0.11
Matches are distributed among these distances:
28 8 0.16
29 35 0.70
30 7 0.14
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAGATCGGTAATTGAG
Found at i:43384153 original size:28 final size:28
Alignment explanation
Indices: 43384065--43384161 Score: 79
Period size: 28 Copynumber: 3.4 Consensus size: 28
43384055 CTTTAACCGA
* * *
43384065 GCACTATGTGTGCAAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
43384094 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
43384122 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
43384150 GCACTAAGTGTG
1 GCACTATGTGTG
43384162 TGAAATGAGA
Statistics
Matches: 51, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
28 31 0.61
29 20 0.39
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:43384161 original size:58 final size:58
Alignment explanation
Indices: 43383975--43384143 Score: 277
Period size: 58 Copynumber: 2.9 Consensus size: 58
43383965 CGAATGATTA
* *
43383975 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
43384033 GAGGCACTGTGTGTACGAATTCCTTTAACCGAGCACTATGTGTGCAAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
43384091 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
43384144 CAGTGGGCAC
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 30 0.29
58 73 0.71
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:43386546 original size:68 final size:68
Alignment explanation
Indices: 43386462--43386618 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
43386452 CTTAAAATTA
* * * *
43386462 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
43386526 ATGT
65 ATGT
* * * * * *
43386530 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGTTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
43386595 TGT
66 TGT
*
43386598 AGCTGTCCGAATATGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
43386619 TCACAGTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 3 0.04
68 72 0.95
69 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.42
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:43388841 original size:15 final size:16
Alignment explanation
Indices: 43388797--43388843 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
43388787 TATACCATTT
43388797 AAACCCC-AAACCAT-
1 AAACCCCTAAACCATG
43388811 AAACCCCTAAACCATG
1 AAACCCCTAAACCATG
*
43388827 AAA-CCTTAAACCATG
1 AAACCCCTAAACCATG
43388842 AA
1 AA
43388844 TAACCACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 7 0.23
15 20 0.67
16 3 0.10
ACGTcount: A:0.49, C:0.34, G:0.04, T:0.13
Consensus pattern (16 bp):
AAACCCCTAAACCATG
Found at i:43388891 original size:7 final size:7
Alignment explanation
Indices: 43388879--43388934 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
43388869 CCCCAACCCT
43388879 TAAACCA
1 TAAACCA
43388886 TAAACCA
1 TAAACCA
*
43388893 -AAATCCC
1 TAAA-CCA
*
43388900 TAAACCT
1 TAAACCA
*
43388907 TAAAACA
1 TAAACCA
*
43388914 TTAACTCA
1 TAAAC-CA
43388922 TAAACCA
1 TAAACCA
43388929 TAAACC
1 TAAACC
43388935 CCTTTCCCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
6 3 0.08
7 27 0.69
8 9 0.23
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:43389038 original size:29 final size:29
Alignment explanation
Indices: 43388976--43389059 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 29
43388966 ACCAGCCCTC
* * *
43388976 AACCCCTAACCCCTATCCCTTTAACCATTA
1 AACCCATAACCCATAACCC-TTAACCATTA
* *
43389006 AACCCGTAACCCATAACCCTTAATCATTA
1 AACCCATAACCCATAACCCTTAACCATTA
*
43389035 AACCCATAATCCATAACCCTTAACC
1 AACCCATAACCCATAACCCTTAACC
43389060 CTTTACCCAC
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 31 0.66
30 16 0.34
ACGTcount: A:0.36, C:0.39, G:0.01, T:0.24
Consensus pattern (29 bp):
AACCCATAACCCATAACCCTTAACCATTA
Found at i:43389057 original size:22 final size:22
Alignment explanation
Indices: 43389013--43389057 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
43389003 TTAAACCCGT
* *
43389013 AACCCATAACCCTTAATCATTA
1 AACCCATAACCCATAACCATTA
* *
43389035 AACCCATAATCCATAACCCTTA
1 AACCCATAACCCATAACCATTA
43389057 A
1 A
43389058 CCCTTTACCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.24
Consensus pattern (22 bp):
AACCCATAACCCATAACCATTA
Found at i:43389061 original size:7 final size:7
Alignment explanation
Indices: 43388971--43389067 Score: 50
Period size: 7 Copynumber: 13.4 Consensus size: 7
43388961 ATTAAACCAG
*
43388971 CCCTCAA
1 CCCTTAA
*
43388978 CCCCTAA
1 CCCTTAA
* *
43388985 CCCCTAT
1 CCCTTAA
43388992 CCCTTTAA
1 CCC-TTAA
*
43389000 CCATTAAA
1 CCCTT-AA
*
43389008 CCCGTAA
1 CCCTTAA
*
43389015 CCCATAA
1 CCCTTAA
43389022 CCCTTAA
1 CCCTTAA
* *
43389029 TCATTAAA
1 CCCTT-AA
*
43389037 CCCATAA
1 CCCTTAA
* *
43389044 TCCATAA
1 CCCTTAA
43389051 CCCTTAA
1 CCCTTAA
*
43389058 CCCTTTA
1 CCCTTAA
43389065 CCC
1 CCC
43389068 ACTAATCCTT
Statistics
Matches: 68, Mismatches: 19, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
7 55 0.81
8 13 0.19
ACGTcount: A:0.32, C:0.42, G:0.01, T:0.25
Consensus pattern (7 bp):
CCCTTAA
Found at i:43389471 original size:28 final size:29
Alignment explanation
Indices: 43389431--43389485 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
43389421 AATAAATTGT
*
43389431 ATTTTAATCAATATAA-ATATAAATAAACC
1 ATTTAAATCAATA-AATATATAAATAAACC
*
43389460 ATTTAAAT-AATAAATATATACATAAA
1 ATTTAAATCAATAAATATATAAATAAA
43389486 ATACTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (29 bp):
ATTTAAATCAATAAATATATAAATAAACC
Found at i:43404883 original size:27 final size:30
Alignment explanation
Indices: 43404819--43404919 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 30
43404809 TGACATGGGT
* *
43404819 GTGTG-TCAGGCCATGTGGAACACAC-AAGC
1 GTGTGCTCAGACCATGTGGAACACACGGA-C
*
43404848 TTGTG-TCAGACCATGTGG-A-ACACGGAC
1 GTGTGCTCAGACCATGTGGAACACACGGAC
* * *
43404875 GTGT-CTCAGGCCGTGTGGAACACACGGGC
1 GTGTGCTCAGACCATGTGGAACACACGGAC
43404904 GTGTGC-CAGACCATGT
1 GTGTGCTCAGACCATGT
43404920 ATAGTCACAC
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
27 19 0.33
28 3 0.05
29 35 0.60
30 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.20
Consensus pattern (30 bp):
GTGTGCTCAGACCATGTGGAACACACGGAC
Found at i:43407057 original size:21 final size:21
Alignment explanation
Indices: 43407007--43407082 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
43406997 TTACAACAAA
* * *
43407007 TACAGATCATGCTTACCAAAT
1 TACAGATCATACTTATCATAT
* *
43407028 AACATATCATACTTATCATAT
1 TACAGATCATACTTATCATAT
* * *
43407049 TATAGATCATACATGTCATAT
1 TACAGATCATACTTATCATAT
43407070 TACAGATCATACT
1 TACAGATCATACT
43407083 GAGCATATAA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAGATCATACTTATCATAT
Found at i:43407089 original size:21 final size:21
Alignment explanation
Indices: 43407033--43407090 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
43407023 CAAATAACAT
* *
43407033 ATCATACTTATCATATTATAG
1 ATCATACTGATCATATTACAG
43407054 ATCATACATG-TCATATTACAG
1 ATCATAC-TGATCATATTACAG
*
43407075 ATCATACTGAGCATAT
1 ATCATACTGATCATAT
43407091 AACATATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (21 bp):
ATCATACTGATCATATTACAG
Found at i:43416220 original size:41 final size:41
Alignment explanation
Indices: 43416143--43416255 Score: 104
Period size: 41 Copynumber: 2.8 Consensus size: 41
43416133 ATATTCGGGT
* * * * * * * *
43416143 TTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTAAATCGGGC
1 TTTGAGCCTACCAGGCTTTGTGCCGGTGTATAAAATCAGAC
43416184 TTT-ATGCCTACCAGGCTTAT-TGCCGGTGTATAAAATCAGAC
1 TTTGA-GCCTACCAGGCTT-TGTGCCGGTGTATAAAATCAGAC
* *
43416225 TTTGAGTCTAGCAGGCTTTGTGCCGGTGTAT
1 TTTGAGCCTACCAGGCTTTGTGCCGGTGTAT
43416256 GATACAAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
40 2 0.03
41 54 0.93
42 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
TTTGAGCCTACCAGGCTTTGTGCCGGTGTATAAAATCAGAC
Found at i:43423956 original size:7 final size:7
Alignment explanation
Indices: 43423946--43424127 Score: 77
Period size: 7 Copynumber: 24.9 Consensus size: 7
43423936 CTCAAAATAA
43423946 AAAAAAT
1 AAAAAAT
43423953 AAAAAATT
1 AAAAAA-T
*
43423961 AAAAATT
1 AAAAAAT
43423968 AAAAAAAT
1 -AAAAAAT
* *
43423976 TAATAAT
1 AAAAAAT
** *
43423983 AATTTATT
1 AA-AAAAT
*
43423991 TAAAAAT
1 AAAAAAT
*
43423998 TAAAAA-
1 AAAAAAT
*
43424004 AAAATAT
1 AAAAAAT
43424011 AAATAAAT
1 AAA-AAAT
*
43424019 AAAATAAA
1 AAAA-AAT
43424027 AATAAAATT
1 AA-AAAA-T
*
43424036 AAAAAAA
1 AAAAAAT
43424043 AAAAAAT
1 AAAAAAT
43424050 ATAATTAATAT
1 A-AA--AA-AT
43424061 AAAAAA-
1 AAAAAAT
43424067 AAAAAA-
1 AAAAAAT
*
43424073 AATAAAT
1 AAAAAAT
43424080 AAAAAA-
1 AAAAAAT
43424086 AAAAAAT
1 AAAAAAT
43424093 AATTAAAA-
1 AA--AAAAT
** *
43424101 ATTAGAT
1 AAAAAAT
43424108 AAAAAAT
1 AAAAAAT
43424115 AAAAAAT
1 AAAAAAT
43424122 AAAAAA
1 AAAAAA
43424128 ATAATAAAAA
Statistics
Matches: 132, Mismatches: 26, Indels: 34
0.69 0.14 0.18
Matches are distributed among these distances:
6 23 0.17
7 57 0.43
8 37 0.28
9 8 0.06
10 4 0.03
11 3 0.02
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.23
Consensus pattern (7 bp):
AAAAAAT
Found at i:43424027 original size:20 final size:18
Alignment explanation
Indices: 43424000--43424137 Score: 111
Period size: 18 Copynumber: 7.3 Consensus size: 18
43423990 TTAAAAATTA
43424000 AAAAAAAATATAAATAAAT
1 AAAAAAAA-ATAAATAAAT
*
43424019 AAAATAAAAATAAAATTAAAA
1 AAAA-AAAAAT-AAA-TAAAT
43424040 AAAAAAAAATATAATTAATAT
1 AAAAAAAAATA-AA-TAA-AT
*
43424061 AAAAAAAAAAAAAATAAAT
1 -AAAAAAAAATAAATAAAT
*
43424080 AAAAAAAAA-AAATAATT
1 AAAAAAAAATAAATAAAT
* *
43424097 AAAAATTAGATAAA-AAAT
1 AAAAA-AAAATAAATAAAT
*
43424115 AAAAAATAAAAAAAT-AAT
1 AAAAAA-AAATAAATAAAT
43424133 AAAAA
1 AAAAA
43424138 CACCGTATAG
Statistics
Matches: 99, Mismatches: 10, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
17 12 0.12
18 32 0.32
19 12 0.12
20 22 0.22
21 11 0.11
22 10 0.10
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (18 bp):
AAAAAAAAATAAATAAAT
Found at i:43424039 original size:6 final size:5
Alignment explanation
Indices: 43423993--43424094 Score: 70
Period size: 5 Copynumber: 20.4 Consensus size: 5
43423983 AATTTATTTA
*
43423993 AAAATT AAAAA AAAAT ATAAAT -AAAT AAAAT AAAAAT AAAATT AAAA-
1 AAAA-T AAAAT AAAAT A-AAAT AAAAT AAAAT -AAAAT AAAA-T AAAAT
* * * * *
43424040 AAAAA AAAAT ATAATT AATAT AAAAA AAAAA AAAAT -AAAT AAAA- AAAA-
1 AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
43424088 AAAAT AA
1 AAAAT AA
43424095 TTAAAAATTA
Statistics
Matches: 79, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
4 20 0.25
5 37 0.47
6 22 0.28
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:43424042 original size:37 final size:33
Alignment explanation
Indices: 43423992--43424125 Score: 112
Period size: 37 Copynumber: 3.8 Consensus size: 33
43423982 TAATTTATTT
43423992 AAAAATTAAAAAAAAATATAAATAAATAAAATAAAA
1 AAAAATTAAAAAAAAA-A-AAA-AAATAAAATAAAA
*
43424028 ATAAAATTAAAAAAAAAAAAATATAATTAATATAAAA
1 A-AAAATTAAAAAAAAAAAAA-A-AA-TAAAATAAAA
**
43424065 AAAAA--AAAAATAAATAAAAAAAA-AAAATAATT
1 AAAAATTAAAAA-AAA-AAAAAAAATAAAATAAAA
* *
43424097 AAAAATTAGATAAAAAATAAAAAATAAAA
1 AAAAATTA-AAAAAAAAAAAAAAATAAAA
43424126 AAATAATAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
32 11 0.13
33 7 0.08
34 15 0.18
35 12 0.14
36 13 0.16
37 25 0.30
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (33 bp):
AAAAATTAAAAAAAAAAAAAAAATAAAATAAAA
Found at i:43424044 original size:41 final size:40
Alignment explanation
Indices: 43423994--43424130 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 40
43423984 ATTTATTTAA
* * *
43423994 AAATTAAAAAAAAATATAAATAAATAAAATAAAAATAAAATT
1 AAATAAAAAAAAAATATAATTAAATAAAA-AAAAA-AAAAAT
43424036 AAA-AAAAAAAAAATATAATTAATATAAAAAAAAAAAAAAT
1 AAATAAAAAAAAAATATAATTAA-ATAAAAAAAAAAAAAAT
* ** * *
43424076 AAATAAAAAAAAAAAATAATTAAA-AATTAGATAAAAAAT
1 AAATAAAAAAAAAATATAATTAAATAAAAAAAAAAAAAAT
43424115 AAA-AAATAAAAAAATA
1 AAATAAA-AAAAAAATA
43424131 ATAAAAACAC
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
38 3 0.04
39 22 0.27
40 9 0.11
41 40 0.48
42 9 0.11
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.20
Consensus pattern (40 bp):
AAATAAAAAAAAAATATAATTAAATAAAAAAAAAAAAAAT
Found at i:43424072 original size:69 final size:70
Alignment explanation
Indices: 43423940--43424123 Score: 193
Period size: 68 Copynumber: 2.6 Consensus size: 70
43423930 CTAGACCTCA
** * * *
43423940 AAATAAAAAAAATAAAAAATTAAAAATTAAAAAAATTAATAATAATTTATTTAAAAATTAAAAAA
1 AAATAAAAAAAAT-AAAAATTAAAAATTAAAAAAAAAAAAAATAATTAATATAAAAA--AAAAAA
43424005 AAAT--AT
63 AAATAAAT
*
43424011 AAATAAATAAAATAAAAA-T-AAAATTAAAAAAAAAAAAATATAATTAATATAAAAAAAAAAAAA
1 AAATAAAAAAAATAAAAATTAAAAATTAAAAAAAAAAAAA-ATAATTAATATAAAAAAAAAAAAA
43424074 ATAAAT
65 ATAAAT
*
43424080 -AA-AAAAAAAA-AATAATTAAAAATTAGATAAAAAATAAAAAATAA
1 AAATAAAAAAAATAAAAATTAAAAATTA-A-AAAAAA-AAAAAATAA
43424124 AAAAATAATA
Statistics
Matches: 97, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
66 4 0.04
67 18 0.19
68 25 0.26
69 18 0.19
70 15 0.15
71 17 0.18
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.23
Consensus pattern (70 bp):
AAATAAAAAAAATAAAAATTAAAAATTAAAAAAAAAAAAAATAATTAATATAAAAAAAAAAAAAA
TAAAT
Found at i:43424074 original size:46 final size:45
Alignment explanation
Indices: 43423990--43424125 Score: 131
Period size: 45 Copynumber: 3.0 Consensus size: 45
43423980 AATAATTTAT
* *
43423990 TTAAAAATTAAAAAAAA-AT-ATAA-ATAAATAAAATAAAAATAAAA
1 TTAAAAA--AAAAAAAATATAATAATATAAAAAAAAAAAAAATAAAA
43424034 TTAAAAAAAAAAAAATATAATTAATATAAAAAAAAAAAAAAT-AAA
1 TTAAAAAAAAAAAAATATAA-TAATATAAAAAAAAAAAAAATAAAA
* *
43424079 TAAAAAAAAAAAATAAT-TAAAAAT-TAGATAAAAAATAAAAAATAAAA
1 TTAAAAAAAAAAA-AATATAATAATATA-A-AAAAAA-AAAAAATAAAA
43424126 AAATAATAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 15
0.81 0.04 0.15
Matches are distributed among these distances:
42 8 0.10
43 4 0.05
44 12 0.15
45 27 0.34
46 25 0.32
47 3 0.04
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.21
Consensus pattern (45 bp):
TTAAAAAAAAAAAAATATAATAATATAAAAAAAAAAAAAATAAAA
Found at i:43479743 original size:27 final size:27
Alignment explanation
Indices: 43479713--43479890 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43479703 ATATTGAGTC
* * * *
43479713 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
43479740 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43479767 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
43479795 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
43479822 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
43479849 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43479876 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43479891 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:43479852 original size:82 final size:81
Alignment explanation
Indices: 43479734--43479889 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43479724 TGCTATATAA
* *
43479734 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43479799 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43479816 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43479880 CACTTAGTGC
65 CACTTAGTGC
43479890 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43498509 original size:40 final size:40
Alignment explanation
Indices: 43498449--43498541 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
43498439 CTCGGTATCA
* *
43498449 CACACTTAGTGTCTCATATAGCTGAAGCTATTCCAATTCG
1 CACACTTAGTGTCTCATATAGCCGAAGCTATTCCAAATCG
*
43498489 CACACTTAGTG-CT-ATTTATAGCCGAAGCTATTTCAAATCG
1 CACACTTAGTGTCTCA--TATAGCCGAAGCTATTCCAAATCG
*
43498529 CATACTTAGTGTC
1 CACACTTAGTGTC
43498542 GAACATAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 42 0.91
41 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (40 bp):
CACACTTAGTGTCTCATATAGCCGAAGCTATTCCAAATCG
Found at i:43502053 original size:11 final size:11
Alignment explanation
Indices: 43502037--43502074 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
43502027 TTTTTAAATG
43502037 AAAATATTTAT
1 AAAATATTTAT
*
43502048 AAAATATATA-
1 AAAATATTTAT
43502058 AAATATATTTAT
1 AAA-ATATTTAT
43502070 AAAAT
1 AAAAT
43502075 TCTATAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 3 0.13
11 17 0.74
12 3 0.13
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AAAATATTTAT
Found at i:43507016 original size:31 final size:31
Alignment explanation
Indices: 43506980--43507046 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
43506970 GATATTTGTC
* * *
43506980 TTGTATGGTTTTTCTTGTATT-ACTTATATTT
1 TTGTATAGTTTGTCTTGTATTGA-TTATATCT
43507011 TTGTATAGTTTGTCTTGTATTGATTATATCT
1 TTGTATAGTTTGTCTTGTATTGATTATATCT
43507042 TTGTA
1 TTGTA
43507047 CGAGACTTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.18, C:0.06, G:0.15, T:0.61
Consensus pattern (31 bp):
TTGTATAGTTTGTCTTGTATTGATTATATCT
Found at i:43509314 original size:40 final size:38
Alignment explanation
Indices: 43509243--43509337 Score: 91
Period size: 40 Copynumber: 2.4 Consensus size: 38
43509233 CGGTACCATG
* * *
43509243 TGGTGTGTAGGGTTGGATGGGTTAATTTTATCCCCACA
1 TGGTGTGTAGGGCTGGATAGGTTAATCTTATCCCCACA
* * * *
43509281 CTTGGTGTGTATGGCTGGGTAGGTTGATCTTATCTCCACA
1 --TGGTGTGTAGGGCTGGATAGGTTAATCTTATCCCCACA
* *
43509321 TGGTGTGTTGGGTTGGA
1 TGGTGTGTAGGGCTGGA
43509338 CGGAGATGGT
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
38 13 0.30
40 31 0.70
ACGTcount: A:0.15, C:0.13, G:0.35, T:0.38
Consensus pattern (38 bp):
TGGTGTGTAGGGCTGGATAGGTTAATCTTATCCCCACA
Found at i:43517577 original size:20 final size:20
Alignment explanation
Indices: 43517552--43517593 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
43517542 CCAAACAACC
* *
43517552 AAAATGTCTAGATAGTCCAA
1 AAAATGTCCAAATAGTCCAA
43517572 AAAATGTCCAAATAGTCCAA
1 AAAATGTCCAAATAGTCCAA
43517592 AA
1 AA
43517594 TTTACCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (20 bp):
AAAATGTCCAAATAGTCCAA
Found at i:43523472 original size:11 final size:11
Alignment explanation
Indices: 43523456--43523485 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
43523446 CTCTGTGGCC
43523456 TTCAACCAATA
1 TTCAACCAATA
43523467 TTCAACCAATA
1 TTCAACCAATA
43523478 TTCAACCA
1 TTCAACCA
43523486 TAGTTGGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (11 bp):
TTCAACCAATA
Found at i:43531614 original size:29 final size:31
Alignment explanation
Indices: 43531582--43531641 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
43531572 TCAAACATTT
*
43531582 TTACTTTCCTTC-AAAACTTTTAC-CCCTTC
1 TTACTTTCCCTCTAAAACTTTTACTCCCTTC
43531611 TTACTTTCCCTCTAAAACTTTTACTCCCTTC
1 TTACTTTCCCTCTAAAACTTTTACTCCCTTC
43531642 CATCCCAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (31 bp):
TTACTTTCCCTCTAAAACTTTTACTCCCTTC
Found at i:43532493 original size:6 final size:6
Alignment explanation
Indices: 43532482--43532513 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
43532472 ATGAGGATTA
43532482 CAGTGC CAGTGC CAGTGC CAGTGC CAGTGC CA
1 CAGTGC CAGTGC CAGTGC CAGTGC CAGTGC CA
43532514 AAGCCAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (6 bp):
CAGTGC
Found at i:43532519 original size:18 final size:18
Alignment explanation
Indices: 43532482--43532520 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
43532472 ATGAGGATTA
**
43532482 CAGTGCCAGTGCCAGTGC
1 CAGTGCCAGTGCCAAAGC
43532500 CAGTGCCAGTGCCAAAGC
1 CAGTGCCAGTGCCAAAGC
43532518 CAG
1 CAG
43532521 AGCACATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.33, G:0.31, T:0.13
Consensus pattern (18 bp):
CAGTGCCAGTGCCAAAGC
Found at i:43536479 original size:21 final size:20
Alignment explanation
Indices: 43536447--43536486 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
43536437 AAAATTTTCC
43536447 AAAAAATCAAAGAAAAATAA
1 AAAAAATCAAAGAAAAATAA
*
43536467 AAAAAATTTAAAGAAAAATA
1 AAAAAA-TCAAAGAAAAATA
43536487 TAGAATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAAATCAAAGAAAAATAA
Found at i:43540790 original size:23 final size:24
Alignment explanation
Indices: 43540770--43540815 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
43540760 CCATAAAATC
43540770 ACTTGTA-AAAACAAGACAAAAAA
1 ACTTGTACAAAACAAGACAAAAAA
* *
43540793 ACTTGTACAAGATAAGACAAAAA
1 ACTTGTACAAAACAAGACAAAAA
43540816 TTTCTAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.61, C:0.13, G:0.11, T:0.15
Consensus pattern (24 bp):
ACTTGTACAAAACAAGACAAAAAA
Found at i:43540791 original size:24 final size:25
Alignment explanation
Indices: 43540764--43540816 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
43540754 AATCATCCAT
*
43540764 AAAATCACTTGTA-AAAACAAGACA
1 AAAATAACTTGTACAAAACAAGACA
* *
43540788 AAAA-AACTTGTACAAGATAAGACA
1 AAAATAACTTGTACAAAACAAGACA
43540812 AAAAT
1 AAAAT
43540817 TTCTAGATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.60, C:0.13, G:0.09, T:0.17
Consensus pattern (25 bp):
AAAATAACTTGTACAAAACAAGACA
Found at i:43544435 original size:15 final size:16
Alignment explanation
Indices: 43544417--43544448 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
43544407 GAAAATATAT
43544417 AAATATAAA-AAAATA
1 AAATATAAATAAAATA
43544432 AAATATAAATAAAATA
1 AAATATAAATAAAATA
43544448 A
1 A
43544449 TTAATATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAATATAAATAAAATA
Found at i:43549608 original size:87 final size:86
Alignment explanation
Indices: 43549507--43549702 Score: 254
Period size: 87 Copynumber: 2.3 Consensus size: 86
43549497 AATTTTTTTA
* *
43549507 AATGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTTGGCAAA-AAAA
1 AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCG-TTTGG-AAATAAAA
* * *
43549571 TCAAAATA-TAATAAAATCCGTTG
64 T-AAAAAAGAAAAAAAATCCGTTG
* * *
43549594 AATGGTGGGAATAAATCCCGAAATAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAGTA
1 AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAATA
43549659 AAAAAGGAAAAAAAATCCGTTG
66 AAAAA-GAAAAAAAATCCGTTG
*
43549681 -ATGGCGAGAATAAATCCCGAAA
1 AATGGCGGGAATAAATCCCGAAA
43549703 TAAAGTCTGT
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
85 8 0.08
86 29 0.30
87 59 0.61
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (86 bp):
AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAATA
AAAAAGAAAAAAAATCCGTTG
Found at i:43549933 original size:291 final size:292
Alignment explanation
Indices: 43549409--43550129 Score: 1033
Period size: 291 Copynumber: 2.5 Consensus size: 292
43549399 AATTAAATCA
* **
43549409 AAATAAAGTCTATTAAACGACATG-AATAAATCAC-GAAACAGAATTATTTGATTAAGTCTTCGT
1 AAATAAAGTCTGTTAAACG-GGTGAAATAAATC-CTGAAACAGAATTATTTGATTAAGTCTTCGT
* * * * * *
43549472 TTAGAAACAAATCAGTATTGAATAAAATTTTTTTAAATGGCGGGAATAAATCCCGAAACAGATTT
64 TTGGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTT
* * *
43549537 TATTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCGTTGAATGGTGG
129 TATTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACGCTGG
* * * *
43549602 GAATAAATCCCGAAATAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAGT-AAAAAAGG
194 GAATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGG
43549666 AAAAAAAATCCGTTG-ATGGC-GAGAATAAATCCCG
259 -AAAAAAATCCGTTGAATGGCAG-GAATAAATCCCG
* * * * *
43549700 AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTAAAACAAAATTATTTGATTAAATATTCATTT
1 AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTTT
* * *
43549765 GGAAACAAATTAATATCAAATAAAATCTTGTTAAACGGCGGGAATAAATCTCGAAACAGATTTTA
66 GGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTTA
* *
43549830 TTTAATTTTAATTTCTTGTTTTGGCAACAAAATCAAAATATAATAAAATCCATTGAACGACT-GG
131 TTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACG-CTGGG
* *
43549894 AATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGA
195 AATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGA
* *
43549959 ATAAAATTCGTTGAATGGCAGGAATAAATCCCG
260 AAAAAATCCGTTGAATGGCAGGAATAAATCCCG
*
43549992 AAATAAAGTCTGTTAAAC-GGTGAGAATAAATCCTGAAATAGAATTATTTGATTAAGTCTTCGTT
1 AAATAAAGTCTGTTAAACGGGTGA-AATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTT
* * *
43550056 TGGAAACAAATCAATATCGAATAAAATCTTGTTAAATAGCGGGAATAAATCTCAAAACAAATTTT
65 TGGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTT
43550121 ATTTAATTT
130 ATTTAATTT
43550130 GGAAACAAAA
Statistics
Matches: 381, Mismatches: 42, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
290 3 0.01
291 231 0.61
292 146 0.38
293 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (292 bp):
AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTTT
GGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTTA
TTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACGCTGGGA
ATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGAA
AAAAATCCGTTGAATGGCAGGAATAAATCCCG
Found at i:43549962 original size:87 final size:87
Alignment explanation
Indices: 43549805--43549988 Score: 226
Period size: 87 Copynumber: 2.1 Consensus size: 87
43549795 TTAAACGGCG
* * * * * * *
43549805 GGAATAAATCTCGAAACAGATTTTATTTAATTTTAATTTCTTGTTTTGGCAACAAAATCAAAATA
1 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
* *
43549870 TAATAAAATCCATTGAACGACT
66 GAATAAAATCCATTGAACGACA
*
43549892 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCG-TTTAGAAATAAAATAAAAAAA
1 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
* * * *
43549956 GGAATAAAATTCGTTGAATGGCA
66 -GAATAAAATCCATTGAACGACA
43549979 GGAATAAATC
1 GGAATAAATC
43549989 CCGAAATAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
86 16 0.20
87 66 0.80
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (87 bp):
GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
GAATAAAATCCATTGAACGACA
Found at i:43550156 original size:74 final size:73
Alignment explanation
Indices: 43550054--43550203 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 73
43550044 TAAGTCTTCG
* * * *
43550054 TTTGGAAACAAATCAATATCGAATAAAATCTTGTTAAATAGCGGGAATAAATCTCAAAACAAATT
1 TTTGGAAACAAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAATT
43550119 TTATTTAA
66 TTATTTAA
* ** * *
43550127 TTTGGAAACAAAATTAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTTGAAGCAGAT
1 TTTGGAAAC-AAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAAT
43550192 TTTATTTAA
65 TTTATTTAA
43550201 TTT
1 TTT
43550204 TAATTTCTCG
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 9 0.13
74 58 0.87
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (73 bp):
TTTGGAAACAAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAATT
TTATTTAA
Found at i:43557127 original size:87 final size:86
Alignment explanation
Indices: 43557026--43557221 Score: 254
Period size: 87 Copynumber: 2.3 Consensus size: 86
43557016 AATTTTTTTA
* *
43557026 AATGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTTGGCAAA-AAAA
1 AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCG-TTTGG-AAATAAAA
* * *
43557090 TCAAAATA-TAATAAAATCCGTTG
64 T-AAAAAAGAAAAAAAATCCGTTG
* * *
43557113 AATGGTGGGAATAAATCCCGAAATAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAGTA
1 AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAATA
43557178 AAAAAGGAAAAAAAATCCGTTG
66 AAAAA-GAAAAAAAATCCGTTG
*
43557200 -ATGGCGAGAATAAATCCCGAAA
1 AATGGCGGGAATAAATCCCGAAA
43557222 TAAAGTCTGT
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
85 8 0.08
86 29 0.30
87 59 0.61
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (86 bp):
AATGGCGGGAATAAATCCCGAAACAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAATA
AAAAAGAAAAAAAATCCGTTG
Found at i:43557452 original size:291 final size:292
Alignment explanation
Indices: 43556928--43557648 Score: 1042
Period size: 291 Copynumber: 2.5 Consensus size: 292
43556918 AATTAAATCA
* **
43556928 AAATAAAGTCTATTAAACGACATG-AATAAATCAC-GAAACAGAATTATTTGATTAAGTCTTCGT
1 AAATAAAGTCTGTTAAACG-GGTGAAATAAATC-CTGAAACAGAATTATTTGATTAAGTCTTCGT
* * * * * *
43556991 TTAGAAACAAATCAGTATTGAATAAAATTTTTTTAAATGGCGGGAATAAATCCCGAAACAGATTT
64 TTGGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTT
* * *
43557056 TATTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCGTTGAATGGTGG
129 TATTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACGCTGG
* * * *
43557121 GAATAAATCCCGAAATAAATTTTATTTAACTTTAATTTCTCGTTTGGAAATAAAGT-AAAAAAGG
194 GAATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGG
43557185 AAAAAAAATCCGTTG-ATGGC-GAGAATAAATCCCG
259 -AAAAAAATCCGTTGAATGGCAG-GAATAAATCCCG
* * * * *
43557219 AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTAAAACAAAATTATTTGATTAAATATTCATTT
1 AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTTT
* *
43557284 GGAAACAAATTAATATCAAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTTA
66 GGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTTA
* *
43557349 TTTAATTTTAATTTCTTGTTTTGGCAACAAAATCAAAATATAATAAAATCCATTGAACGACT-GG
131 TTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACG-CTGGG
* *
43557413 AATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGA
195 AATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGA
* *
43557478 ATAAAATTCGTTGAATGGCAGGAATAAATCCCG
260 AAAAAATCCGTTGAATGGCAGGAATAAATCCCG
*
43557511 AAATAAAGTCTGTTAAAC-GGTGAGAATAAATCCTGAAATAGAATTATTTGATTAAGTCTTCGTT
1 AAATAAAGTCTGTTAAACGGGTGA-AATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTT
* * *
43557575 TGGAAACAAATCAATATCGAATAAAATCTTGTTAAATAGCGGGAATAAATCTCAAAACAAATTTT
65 TGGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTT
43557640 ATTTAATTT
130 ATTTAATTT
43557649 GGAAACAAAA
Statistics
Matches: 383, Mismatches: 40, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
290 3 0.01
291 232 0.61
292 147 0.38
293 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (292 bp):
AAATAAAGTCTGTTAAACGGGTGAAATAAATCCTGAAACAGAATTATTTGATTAAGTCTTCGTTT
GGAAACAAATCAATATCGAATAAAATCTTGTTAAATGGCGGGAATAAATCTCGAAACAGATTTTA
TTTAATTTTAATTTCTCGTTTTGGCAAAAAAATCAAAATATAATAAAATCCATTGAACGCTGGGA
ATAAATCCCAAAACAAATTTTATTTAACTTTAATTTCTCGTTTAGAAATAAAATAAAAAAAGGAA
AAAAATCCGTTGAATGGCAGGAATAAATCCCG
Found at i:43557481 original size:87 final size:87
Alignment explanation
Indices: 43557324--43557507 Score: 226
Period size: 87 Copynumber: 2.1 Consensus size: 87
43557314 TTAAATGGCG
* * * * * * *
43557324 GGAATAAATCTCGAAACAGATTTTATTTAATTTTAATTTCTTGTTTTGGCAACAAAATCAAAATA
1 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
* *
43557389 TAATAAAATCCATTGAACGACT
66 GAATAAAATCCATTGAACGACA
*
43557411 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCG-TTTAGAAATAAAATAAAAAAA
1 GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
* * * *
43557475 GGAATAAAATTCGTTGAATGGCA
66 -GAATAAAATCCATTGAACGACA
43557498 GGAATAAATC
1 GGAATAAATC
43557508 CCGAAATAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
86 16 0.20
87 66 0.80
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (87 bp):
GGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTTCTCGTTTTAGAAACAAAATAAAAAAA
GAATAAAATCCATTGAACGACA
Found at i:43557675 original size:74 final size:73
Alignment explanation
Indices: 43557573--43557722 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 73
43557563 TAAGTCTTCG
* * * *
43557573 TTTGGAAACAAATCAATATCGAATAAAATCTTGTTAAATAGCGGGAATAAATCTCAAAACAAATT
1 TTTGGAAACAAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAATT
43557638 TTATTTAA
66 TTATTTAA
* ** * *
43557646 TTTGGAAACAAAATTAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTTGAAGCAGAT
1 TTTGGAAAC-AAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAAT
43557711 TTTATTTAA
65 TTTATTTAA
43557720 TTT
1 TTT
43557723 TAATTTCTCG
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 9 0.13
74 58 0.87
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (73 bp):
TTTGGAAACAAATCAAAATCGAATAAAATCTTGTTAAAAAGCGAGAATAAAGCTCAAAACAAATT
TTATTTAA
Found at i:43567396 original size:2 final size:2
Alignment explanation
Indices: 43567391--43567421 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
43567381 AATATATAAT
43567391 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
43567422 CTATATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:43568336 original size:4 final size:4
Alignment explanation
Indices: 43568329--43568377 Score: 66
Period size: 4 Copynumber: 12.2 Consensus size: 4
43568319 GAGGAAGGAG
43568329 AAGA AAGA AAGGA AA-A GAAG- AAGA AAGA AAGA AAGA AAGA AAGA AAGA
1 AAGA AAGA AA-GA AAGA -AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
43568377 A
1 A
43568378 GGCATGTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
3 4 0.10
4 33 0.80
5 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:43568352 original size:20 final size:18
Alignment explanation
Indices: 43568314--43568375 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
43568304 GAGGGAAAGA
* *
43568314 AAAGAGAGGAAGGAGAAG
1 AAAGAAAGGAAAGAGAAG
43568332 AAAGAAAGGAAAAGAAGAAG
1 AAAGAAAGG-AAAG-AGAAG
43568352 AAAGAAA-GAAAGA-AAG
1 AAAGAAAGGAAAGAGAAG
43568368 AAAGAAAG
1 AAAGAAAG
43568376 AAGGCATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 10 0.26
17 1 0.03
18 12 0.31
19 4 0.10
20 12 0.31
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (18 bp):
AAAGAAAGGAAAGAGAAG
Found at i:43568360 original size:28 final size:28
Alignment explanation
Indices: 43568308--43568367 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
43568298 AAAAAAGAGG
* *
43568308 GAAA-GAAAAGAGAGGAAGGAGAAGAAA
1 GAAAGGAAAAGAGAAGAAAGAGAAGAAA
43568335 GAAAGGAAAAGAAGAAGAAAGA-AAGAAA
1 GAAAGGAAAAG-AGAAGAAAGAGAAGAAA
43568363 GAAAG
1 GAAAG
43568368 AAAGAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.14
28 17 0.59
29 8 0.28
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
GAAAGGAAAAGAGAAGAAAGAGAAGAAA
Found at i:43568366 original size:23 final size:23
Alignment explanation
Indices: 43568308--43568377 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
43568298 AAAAAAGAGG
43568308 GAAAGAAAAGAGAGGAAGGAGAAGAAA
1 GAAAGAAAAGA-A-GAA-GA-AAGAAA
43568335 GAAAGGAAAAGAAGAAGAAAGAAA
1 GAAA-GAAAAGAAGAAGAAAGAAA
43568359 GAAAG-AAAG-A-AAGAAAGAA
1 GAAAGAAAAGAAGAAGAAAGAA
43568378 GGCATGTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
20 9 0.21
21 1 0.02
22 4 0.10
23 1 0.02
24 10 0.24
25 2 0.05
26 3 0.07
27 5 0.12
28 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (23 bp):
GAAAGAAAAGAAGAAGAAAGAAA
Found at i:43568997 original size:9 final size:10
Alignment explanation
Indices: 43568976--43569008 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
43568966 GAATGTTATG
43568976 TTTTAAAATT
1 TTTTAAAATT
43568986 TTTTAAAATT
1 TTTTAAAATT
*
43568996 TTTTAAAGTT
1 TTTTAAAATT
43569006 TTT
1 TTT
43569009 ATATTAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:43572058 original size:14 final size:14
Alignment explanation
Indices: 43572039--43572071 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
43572029 TAATATATTT
43572039 AATTTATATAACAA
1 AATTTATATAACAA
*
43572053 AATTTATATTACAA
1 AATTTATATAACAA
43572067 AATTT
1 AATTT
43572072 GTTCCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTATATAACAA
Found at i:43572152 original size:66 final size:63
Alignment explanation
Indices: 43571930--43572150 Score: 304
Period size: 62 Copynumber: 3.5 Consensus size: 63
43571920 CAATGTACCT
*
43571930 AATTTATATTACAAAGTTTGTTCCAA-TTTTAATGTTATAATGTATTTAATTTATATAAA-AA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAAACAA
* *
43571991 AATTTATATTGCAAAGTTTGTTCCAATTTTTAATGTTGTAATATATTTAATTTATAT-AACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAAACAA
* * *
43572053 AATTTATATTACAAAATTTGTTCCAATTTTTAGTGATGTAATGTATTTAATTTATATTATAAACA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAA-TT-TA-TATAAACA
43572118 A
63 A
* * * *
43572119 AAGTTATATTATAAAGTTTGTTACAAGTTTTA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTA
43572151 GTTGTTTAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
61 27 0.19
62 75 0.53
63 2 0.01
64 2 0.01
65 3 0.02
66 32 0.23
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (63 bp):
AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAAACAA
Found at i:43573183 original size:14 final size:14
Alignment explanation
Indices: 43573164--43573197 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
43573154 AAATTACATG
43573164 TTAGAATAGTATCA
1 TTAGAATAGTATCA
43573178 TTAGAATAGTATCA
1 TTAGAATAGTATCA
43573192 TTAGAA
1 TTAGAA
43573198 AAAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:43575253 original size:9 final size:8
Alignment explanation
Indices: 43575236--43575296 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
43575226 CCTTCCCGCC
*
43575236 CTCTCCTT
1 CTCTTCTT
43575244 CTCCTTCTT
1 CT-CTTCTT
43575253 CTTCTTCTT
1 C-TCTTCTT
43575262 CTCTTCTT
1 CTCTTCTT
* *
43575270 TTCTTTTT
1 CTCTTCTT
* *
43575278 TTCTCCTT
1 CTCTTCTT
43575286 CTCTTTCTT
1 CTC-TTCTT
43575295 CT
1 CT
43575297 ATTTCTTCAG
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
8 23 0.53
9 19 0.44
10 1 0.02
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (8 bp):
CTCTTCTT
Found at i:43577030 original size:50 final size:48
Alignment explanation
Indices: 43576908--43577229 Score: 190
Period size: 46 Copynumber: 6.8 Consensus size: 48
43576898 CATGGGTAAG
*
43576908 GTGCCGATGCCATGTCCCAGACAT-AGTCTTACACTAGCTATCATCTTC
1 GTGCCGATGCCATGTCCCAGACATGA-TCTTACACTAGCTATCATCTCC
* * *
43576956 GAGGCCGATGCCATGTCCCTGACATGATCTTACACTAGCTCTCA-CATAACC
1 G-TGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTATCATC-T--CC
* *
43577007 GTGCCGATGCTATGTCCCAGACATGGTCTTACACTTA-C-A-CATCT-C
1 GTGCCGATGCCATGTCCCAGACATGATCTTACAC-TAGCTATCATCTCC
* * * *
43577052 GCAGCCGATG-CATGTCCCAAACATG-TCTTACACTGGCT-TACGTCT-C
1 G-TGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTAT-CATCTCC
* * * * *
43577098 GAGGCCGATG-CATGTCCCAGACATG-TTTTACACTAGC-ACTCGTTTCA
1 G-TGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTA-TCATCTCC
* * * * * * * * * *
43577145 ATACCGATGTCATGTTCTAGACATGGTCTTACACTGGCTCTCATAT-T
1 GTGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTATCATCTCC
* *
43577192 GTGGCCGATG-CATGTCCTAGACAT-TTCTTACACTAGCT
1 GT-GCCGATGCCATGTCCCAGACATGATCTTACACTAGCT
43577230 CACATAAGTG
Statistics
Matches: 218, Mismatches: 37, Indels: 40
0.74 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 9 0.04
45 15 0.07
46 66 0.30
47 28 0.13
48 25 0.11
49 39 0.18
50 31 0.14
51 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTATCATCTCC
Found at i:43578790 original size:109 final size:107
Alignment explanation
Indices: 43578660--43579207 Score: 547
Period size: 109 Copynumber: 5.2 Consensus size: 107
43578650 TTATTAATTA
43578660 TTATAAATTGTTTGTGTTTAGTTTAGTGTT-TTGTGATTTTTTATGAATGTAATTTTTTTTTGTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAA-TTTTTTTT-TT
* * *
43578724 TTTTAAATTATTTTATAGTTATTTTGTTA-TGAATTTCTGATTACG
64 TTTT-AATTATTTTAAAGTTATTTTGTTAGT-AATTTATGATTAGG
* *
43578769 TTATAAATTGTTTGTGTTTAGTTTAGTGTT-TTGTAATTTTTTATGAATGTAA----TTTTTTAT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAATTTTTTTTTTTT
* * *
43578829 TT-A-T-TTTT-AAGTCATTTTTTTAGTAATTTATGGTTAGG
66 TTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * *
43578867 TTATTAATTGTTTGTGTTTAGTTTAATGTTTATTGTAATTTTTTATGAATGTAAGTTTTTTTTAT
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAA---TTTTTT-T
* ** *
43578932 TTTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTAGG
61 TTTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* *
43578979 -T-T---TTGTTCGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAA-------ATTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAATTTTTTTTTTT
*
43579032 TTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTATG
65 TTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * * * *
43579075 TTATAAATTGTTTGTATTTAGTTTAGTTTTTATTGTGACTTGTTATAAATGTAAATTTTTTTTGT
1 TTATAAATTGTTTGTGTTTAGTTTAG-TGTTATTGTGATTTTTTATGAATGT-AATTTTTTTT-T
*
43579140 GTTTTTAAATTATTTTAAAGTT-TTTT-TTAGTAATTTATAATTAGG
63 -TTTTT-AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
*
43579185 TTAT-AATT-TTTTTGTTTAGTTTA
1 TTATAAATTGTTTGTGTTTAGTTTA
43579208 ACATGTATTA
Statistics
Matches: 369, Mismatches: 38, Indels: 65
0.78 0.08 0.14
Matches are distributed among these distances:
96 41 0.11
97 1 0.00
98 49 0.13
99 7 0.02
100 23 0.06
101 38 0.10
102 3 0.01
103 5 0.01
104 4 0.01
107 46 0.12
108 20 0.05
109 56 0.15
110 24 0.07
111 13 0.04
112 39 0.11
ACGTcount: A:0.25, C:0.01, G:0.14, T:0.60
Consensus pattern (107 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAATTTTTTTTTTTT
TTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
Found at i:43579025 original size:107 final size:106
Alignment explanation
Indices: 43578821--43579207 Score: 357
Period size: 112 Copynumber: 3.6 Consensus size: 106
43578811 ATGAATGTAA
* * * * **
43578821 TTTTTTATTTATTTTTAAGTCATTTTTTTAGTAATTTATGGTTAGGTTATTAATTGTTTGTGTTT
1 TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGG---TT-ATTGTTTGTGTTT
* *
43578886 AGTTTAATGTTTATTGTAATTTTTTATGAATGTAAGTTTTTTTTATT
62 AGTTTAGTGTTTATTGTGATTTTTTATGAATGTAA-TTTTTTTTA-T
* ** *
43578933 TTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTAGGTT-TTGTTCGTGTTTAGTT
1 TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTATTGTTTGTGTTTAGTT
43578997 TAGTGTTTATTGTGATTTTTTATGAATGTAA--------A-
66 TAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTAT
* * *
43579029 TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTTTGTATTT
1 TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTA-GGT-T--ATTGTTTGTGTTT
* * * * *
43579094 AGTTTAGTTTTTATTGTGACTTGTTATAAATGTAAATTTTTTTTGT
62 AGTTTAGTGTTTATTGTGATTTTTTATGAATGT-AATTTTTTTTAT
* * *
43579140 GTTTTTAAATTATTTTAAAGTT-TTTT-TTAGTAATTTATAATTAGGTTATAATTTTTTTGTTTA
1 -TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTAT--TGTTTGTGTTTA
43579203 GTTTA
63 GTTTA
43579208 ACATGTATTA
Statistics
Matches: 227, Mismatches: 30, Indels: 40
0.76 0.10 0.13
Matches are distributed among these distances:
96 40 0.18
97 2 0.01
98 2 0.01
101 39 0.17
102 2 0.01
106 2 0.01
107 44 0.19
108 15 0.07
109 4 0.02
110 16 0.07
111 4 0.02
112 57 0.25
ACGTcount: A:0.25, C:0.01, G:0.13, T:0.60
Consensus pattern (106 bp):
TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTATTGTTTGTGTTTAGTT
TAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTAT
Found at i:43579040 original size:96 final size:99
Alignment explanation
Indices: 43578933--43579135 Score: 268
Period size: 101 Copynumber: 2.1 Consensus size: 99
43578923 TTTTTTTATT
*
43578933 TTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTA-GGT-T-TTGTTCGTGTTTAG
1 TTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTATGGTATATTGTTCGTATTTAG
* * *
43578995 TTTAGTGTTTATTGTGATTTTTTATGAATGTAAA
66 TTTAGTGTTTATTGTGACTTGTTATAAATGTAAA
* ** * * *
43579029 TTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTTTGTATTT
1 TTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTATGGTAT--ATTGTTCGTATTT
*
43579094 AGTTTAGTTTTTATTGTGACTTGTTATAAATGTAAA
64 AGTTTAGTGTTTATTGTGACTTGTTATAAATGTAAA
43579130 TTTTTT
1 TTTTTT
43579136 TTGTGTTTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
96 40 0.44
97 2 0.02
98 1 0.01
101 48 0.53
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (99 bp):
TTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTATGGTATATTGTTCGTATTTAG
TTTAGTGTTTATTGTGACTTGTTATAAATGTAAA
Done.