Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 127 of 295
Found at i:43579086 original size:208 final size:204
Alignment explanation
Indices: 43578660--43579188 Score: 674
Period size: 208 Copynumber: 2.6 Consensus size: 204
43578650 TTATTAATTA
43578660 TTATAAATTGTTTGTGTTTAGTTTAGTG-TT-TTGTGATTTTTTATGAATGTAATTTTTTTTTGT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTT-T
* * * * *
43578723 TTTTTAAATTATTTTATAGTTATTTTGTTA-TGAATTTCTGATTACGTTATAAATTGTTTGTGTT
65 TTTTTAAATTATTTTAAAGTTATTTTGTTAGT-AATTTATAATTA-GGT-T--ATTGTTCGTGTT
* * *
43578787 TAGTTTAGTGTTTTGTAATTTTTTATGAATGTAATTTTTTATTTATTTTTAAGTCATTTTTTTAG
125 TAGTTTAGTGTTTTGTAATTTTTTATGAATGTAATTTTTTAATTATTTTAAAGTCATTTTGTTAG
*
43578852 TAATTTATGGTTAGG
190 TAATTTATGATTAGG
* * *
43578867 TTATTAATTGTTTGTGTTTAGTTTAATGTTTATTGTAATTTTTTATGAATGTAAGTTTTTTTTAT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAA-TTTTTTTT-T
* * **
43578932 TTTTTTTAATTATTTGAAAGTTATTTTGCAAGTAATTTATAATTAGGTT-TTGTTCGTGTTTAGT
64 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTATTGTTCGTGTTTAGT
* *
43578996 TTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTAATTATTTTAAAGTTATTTTGTTAGT
129 TTAGTG-TT-TTGTAATTTTTTATGAATGT-AATTTTTTAATTATTTTAAAGTCATTTTGTTAGT
*
43579061 AATTTATGATTATG
191 AATTTATGATTAGG
* * * * *
43579075 TTATAAATTGTTTGTATTTAGTTTAGTTTTTATTGTGACTTGTTATAAATGTAAATTTTTTTTGT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGT-AATTTTTTTT-T
*
43579140 GTTTTTAAATTATTTTAAAGTT-TTTT-TTAGTAATTTATAATTAGGTTAT
64 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTAT
43579189 AATTTTTTTG
Statistics
Matches: 279, Mismatches: 33, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
205 20 0.07
206 21 0.08
207 50 0.18
208 117 0.42
209 25 0.09
210 44 0.16
211 2 0.01
ACGTcount: A:0.25, C:0.01, G:0.14, T:0.60
Consensus pattern (204 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTTTT
TTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATAATTAGGTTATTGTTCGTGTTTAGTTT
AGTGTTTTGTAATTTTTTATGAATGTAATTTTTTAATTATTTTAAAGTCATTTTGTTAGTAATTT
ATGATTAGG
Found at i:43579500 original size:11 final size:12
Alignment explanation
Indices: 43579473--43579502 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
43579463 ATTTATGAGA
*
43579473 TTTTTTATTGTG
1 TTTTTTACTGTG
43579485 TTTTTTACTGTG
1 TTTTTTACTGTG
43579497 TTTTTT
1 TTTTTT
43579503 GTTACTCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.03, G:0.13, T:0.77
Consensus pattern (12 bp):
TTTTTTACTGTG
Found at i:43583270 original size:25 final size:26
Alignment explanation
Indices: 43583242--43583290 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
43583232 ATAAACATCA
*
43583242 AACTAA-ACAAATAA-TTTATAATAGT
1 AACTAACA-AAATAACTTTAGAATAGT
43583267 AACTAACAAAATAACTTTAGAATA
1 AACTAACAAAATAACTTTAGAATA
43583291 AATTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (26 bp):
AACTAACAAAATAACTTTAGAATAGT
Found at i:43583807 original size:33 final size:33
Alignment explanation
Indices: 43583768--43583835 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
43583758 ACTCCCACCG
43583768 ACATAATATTTTAGTGTTTAATCGTACTGGCAT
1 ACATAATATTTTAGTGTTTAATCGTACTGGCAT
43583801 ACATAATATTTTAGTGTTTAATCGTACTGGCAT
1 ACATAATATTTTAGTGTTTAATCGTACTGGCAT
43583834 AC
1 AC
43583836 CATTTTGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (33 bp):
ACATAATATTTTAGTGTTTAATCGTACTGGCAT
Found at i:43583849 original size:29 final size:32
Alignment explanation
Indices: 43583772--43583851 Score: 85
Period size: 33 Copynumber: 2.6 Consensus size: 32
43583762 CCACCGACAT
* *
43583772 AATATTTTAGTGTTTAATCGTACTGGCATACA
1 AATATTTGAGTATTTAATCGTACTGGCATACA
* *
43583804 TAATATTTTAGTGTTTAATCGTACTGGCATAC-
1 -AATATTTGAGTATTTAATCGTACTGGCATACA
*
43583836 CAT-TTTGA-TATTTAAT
1 AATATTTGAGTATTTAAT
43583852 TTTTTTTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 7 0.16
30 4 0.09
31 2 0.05
33 31 0.70
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (32 bp):
AATATTTGAGTATTTAATCGTACTGGCATACA
Found at i:43586964 original size:31 final size:31
Alignment explanation
Indices: 43586929--43586987 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
43586919 ATTGTCATTA
43586929 AACTATTCAAAAGTTTTCATTTAAGTCACTG
1 AACTATTCAAAAGTTTTCATTTAAGTCACTG
* *
43586960 AACTATTTAAAAGTTTTTATTTAAGTCA
1 AACTATTCAAAAGTTTTCATTTAAGTCA
43586988 TTGGCTGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.42
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTCATTTAAGTCACTG
Found at i:43590908 original size:43 final size:42
Alignment explanation
Indices: 43590822--43590934 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 42
43590812 CATCGACTTA
* **
43590822 TGATTTACGTGTAAGACCATGTCTGGGACATCGGTATCGTATT
1 TGATTT-CGTGTAAGACCATGCCTGGGACATCGACATCGTATT
*
43590865 TGATTTCGTGTAAGACCCTGCCTGGGACAGT-GACATCGATATT
1 TGATTTCGTGTAAGACCATGCCTGGGACA-TCGACATCG-TATT
* * * * *
43590908 TGGTTACATGTAAGACCACGTCTGGGA
1 TGATTTCGTGTAAGACCATGCCTGGGA
43590935 TGTCGGCATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGCCTGGGACATCGACATCGTATT
Found at i:43593216 original size:19 final size:18
Alignment explanation
Indices: 43593183--43593220 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
43593173 TTAAATAAAT
*
43593183 AAATTTAACAATTAATTA
1 AAATTAAACAATTAATTA
43593201 AAATTAAACTAATTAATTA
1 AAATTAAAC-AATTAATTA
43593220 A
1 A
43593221 TTATAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTAAACAATTAATTA
Found at i:43594317 original size:18 final size:18
Alignment explanation
Indices: 43594283--43594344 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
43594273 AGCTCGACTC
*
43594283 AAATATATTAA--ATTAT
1 AAATATATTAATTAATAT
43594299 AAATATATTAATTAATAT
1 AAATATATTAATTAATAT
* * *
43594317 AATTATATTTATTAAAAT
1 AAATATATTAATTAATAT
43594335 ATAATA-ATTA
1 A-AATATATTA
43594345 TTTGTAGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
16 11 0.30
18 23 0.62
19 3 0.08
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTAATTAATAT
Found at i:43594335 original size:20 final size:20
Alignment explanation
Indices: 43594288--43594339 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 20
43594278 GACTCAAATA
* *
43594288 TATTAAATTATAAATATATT
1 TATTAAAATATAATTATATT
*
43594308 AATT--AATATAATTATATT
1 TATTAAAATATAATTATATT
43594326 TATTAAAATATAAT
1 TATTAAAATATAAT
43594340 AATTATTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 15 0.58
20 11 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TATTAAAATATAATTATATT
Found at i:43595147 original size:10 final size:10
Alignment explanation
Indices: 43595132--43595177 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
43595122 AGTTCACTTG
43595132 AGCTCGTTTC
1 AGCTCGTTTC
43595142 AGCTCGTTTC
1 AGCTCGTTTC
* *
43595152 AGCTTGATTTT
1 AGCTCG-TTTC
43595163 AGCTCGTTTC
1 AGCTCGTTTC
43595173 AGCTC
1 AGCTC
43595178 ATTCCTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.13, C:0.26, G:0.20, T:0.41
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:43596671 original size:11 final size:11
Alignment explanation
Indices: 43596655--43596679 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
43596645 ACCGAGTATG
43596655 TTTAAAAATGA
1 TTTAAAAATGA
43596666 TTTAAAAATGA
1 TTTAAAAATGA
43596677 TTT
1 TTT
43596680 TCAATCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTAAAAATGA
Found at i:43596873 original size:18 final size:18
Alignment explanation
Indices: 43596847--43596883 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
43596837 TACTTGGCCT
43596847 TCAAGATTGATACCAAAA
1 TCAAGATTGATACCAAAA
* *
43596865 TCAATATTGATACCCAAA
1 TCAAGATTGATACCAAAA
43596883 T
1 T
43596884 TGCTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (18 bp):
TCAAGATTGATACCAAAA
Found at i:43603401 original size:31 final size:29
Alignment explanation
Indices: 43603347--43603405 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
43603337 GTAATAAAAA
43603347 TTATTATTTATTAAGTAGATATTTATTAT
1 TTATTATTTATTAAGTAGATATTTATTAT
43603376 TTATTA-TTATTAAGTTAAAGATATTTATTA
1 TTATTATTTATTAAG-T--AGATATTTATTA
43603406 GATAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.30
29 7 0.26
31 12 0.44
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (29 bp):
TTATTATTTATTAAGTAGATATTTATTAT
Found at i:43604450 original size:6 final size:6
Alignment explanation
Indices: 43604439--43604485 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
43604429 TGTCGAATAT
* * *
43604439 TGTTAC TGTTAC TGTTAC TGCTAC TGCTAC TGTTTC TGATTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TG-TTAC TGTT
43604486 TAGGTACTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.15, C:0.19, G:0.17, T:0.49
Consensus pattern (6 bp):
TGTTAC
Found at i:43608457 original size:17 final size:17
Alignment explanation
Indices: 43608416--43608463 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
43608406 CATTATCCCC
*
43608416 AATGCACTGAC-ATGAA
1 AATGCAATGACAATGAA
* *
43608432 TATGGAATGACAATGAA
1 AATGCAATGACAATGAA
43608449 AATGCAATGACAATG
1 AATGCAATGACAATG
43608464 TATACTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (17 bp):
AATGCAATGACAATGAA
Found at i:43609570 original size:17 final size:18
Alignment explanation
Indices: 43609550--43609583 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43609540 AAGTGAATTG
43609550 AAATTG-AAAAATTAAAT
1 AAATTGCAAAAATTAAAT
*
43609567 AAATTGCAGAAATTAAA
1 AAATTGCAAAAATTAAA
43609584 ATGAGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAAAAATTAAAT
Found at i:43610358 original size:27 final size:26
Alignment explanation
Indices: 43610328--43610389 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
43610318 AGATAATTAA
43610328 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
43610355 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
43610382 AATAAAAT
1 AATAAAAT
43610390 GCAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:43611997 original size:15 final size:14
Alignment explanation
Indices: 43611977--43612048 Score: 67
Period size: 15 Copynumber: 5.0 Consensus size: 14
43611967 TTAATATCTG
43611977 AAAATAATAAATAAT
1 AAAATAATAAA-AAT
*
43611992 AAAATAAGATAAAAT
1 AAAATAATA-AAAAT
43612007 -AAATAA-AAAAAT
1 AAAATAATAAAAAT
*
43612019 AAAAAAAATAAAAAT
1 -AAAATAATAAAAAT
*
43612034 AAAAAAAATAAAAAT
1 -AAAATAATAAAAAT
43612049 TGGGTTGCCT
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
12 5 0.10
13 1 0.02
14 11 0.22
15 32 0.63
16 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.18
Consensus pattern (14 bp):
AAAATAATAAAAAT
Found at i:43612003 original size:5 final size:5
Alignment explanation
Indices: 43611989--43612046 Score: 63
Period size: 5 Copynumber: 12.4 Consensus size: 5
43611979 AATAATAAAT
*
43611989 AATAA AATAA GATAA AAT-A AAT-A AA-AA AATAA AA-AA AATAAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA
43612036 AA-AA AATAA AA
1 AATAA AATAA AA
43612047 ATTGGGTTGC
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
4 18 0.39
5 23 0.50
6 5 0.11
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:43612010 original size:22 final size:21
Alignment explanation
Indices: 43611982--43612046 Score: 87
Period size: 22 Copynumber: 3.1 Consensus size: 21
43611972 ATCTGAAAAT
43611982 AATAAATAATAAAATAAGATAA
1 AATAAATAATAAAATAA-ATAA
* *
43612004 AATAAATAAAAAAATAAAAAA
1 AATAAATAATAAAATAAATAA
*
43612025 AATAAA-AATAAAAAAAATAA
1 AATAAATAATAAAATAAATAA
43612045 AA
1 AA
43612047 ATTGGGTTGC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
20 13 0.34
21 9 0.24
22 16 0.42
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.17
Consensus pattern (21 bp):
AATAAATAATAAAATAAATAA
Found at i:43612014 original size:9 final size:9
Alignment explanation
Indices: 43611977--43612045 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
43611967 TTAATATCTG
43611977 AAAAT-AAT
1 AAAATAAAT
43611985 -AAAT-AAT
1 AAAATAAAT
43611992 AAAATAAGAT
1 AAAATAA-AT
43612002 AAAATAAAT
1 AAAATAAAT
43612011 AAAA-AAAT
1 AAAATAAAT
*
43612019 AAAAAAAAT
1 AAAATAAAT
*
43612028 AAAAATAAAA
1 -AAAATAAAT
43612038 AAAATAAA
1 AAAATAAA
43612046 AATTGGGTTG
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
7 7 0.13
8 12 0.22
9 19 0.35
10 16 0.30
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.17
Consensus pattern (9 bp):
AAAATAAAT
Found at i:43612047 original size:22 final size:22
Alignment explanation
Indices: 43611977--43612047 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 22
43611967 TTAATATCTG
*
43611977 AAAATAATAAAT-AATAAAATAA
1 AAAATAA-AAATAAAAAAAATAA
* *
43611999 GATAAA-ATAAATAAAAAAATAAAA
1 -A-AAATAAAAATAAAAAAA-ATAA
43612023 AAAATAAAAATAAAAAAAATAA
1 AAAATAAAAATAAAAAAAATAA
43612045 AAA
1 AAA
43612048 TTGGGTTGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
22 13 0.33
23 20 0.51
24 6 0.15
ACGTcount: A:0.82, C:0.00, G:0.01, T:0.17
Consensus pattern (22 bp):
AAAATAAAAATAAAAAAAATAA
Found at i:43615742 original size:27 final size:26
Alignment explanation
Indices: 43615712--43615773 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
43615702 AGATAATTAA
43615712 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
43615739 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
43615766 AATAAAAT
1 AATAAAAT
43615774 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:43625152 original size:102 final size:102
Alignment explanation
Indices: 43624976--43625169 Score: 343
Period size: 102 Copynumber: 1.9 Consensus size: 102
43624966 ACTATAGCCA
* * *
43624976 ATTATAAGAGTTAGATAGTTTCTGCAAGTATACAGGTCAAGTTGTAATATAATTACAACAAATTA
1 ATTATAAGAGTTAGACAGTTTATGCAAGTATACAGGTCAAGTTGTAATATAATTACAACAAAGTA
43625041 GGTAAGTACTCCGAGGATCACACCCAATGAAGGCGCC
66 GGTAAGTACTCCGAGGATCACACCCAATGAAGGCGCC
* *
43625078 ATTATAAGAGTTAGGCAGTTTATGCAAGTATACAGGTCAAGTTGTAATATAGTTACAACAAAGTA
1 ATTATAAGAGTTAGACAGTTTATGCAAGTATACAGGTCAAGTTGTAATATAATTACAACAAAGTA
43625143 GGTAAGTACTCCGAGGATCACACCCAA
66 GGTAAGTACTCCGAGGATCACACCCAA
43625170 GGGAGGCGGA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 87 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (102 bp):
ATTATAAGAGTTAGACAGTTTATGCAAGTATACAGGTCAAGTTGTAATATAATTACAACAAAGTA
GGTAAGTACTCCGAGGATCACACCCAATGAAGGCGCC
Found at i:43629232 original size:15 final size:16
Alignment explanation
Indices: 43629212--43629244 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
43629202 TATATATTTT
43629212 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
43629227 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
43629244 T
1 T
43629245 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:43629316 original size:21 final size:22
Alignment explanation
Indices: 43629290--43629348 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
43629280 GTTTTAAGAA
*
43629290 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
43629311 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
43629333 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
43629349 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:43629379 original size:25 final size:26
Alignment explanation
Indices: 43629319--43629367 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
43629309 ATTTGTTTTA
*
43629319 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
43629343 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
43629368 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:43629543 original size:16 final size:16
Alignment explanation
Indices: 43629522--43629562 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
43629512 ATTTGTATGG
43629522 GCCCGGCCCGAACCCA
1 GCCCGGCCCGAACCCA
*
43629538 GCCCGGCCCGAACCCG
1 GCCCGGCCCGAACCCA
43629554 GCCCGGCCC
1 GCCCGGCCC
43629563 ATGATCACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.59, G:0.29, T:0.00
Consensus pattern (16 bp):
GCCCGGCCCGAACCCA
Found at i:43636041 original size:25 final size:25
Alignment explanation
Indices: 43636013--43636083 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
43636003 TAGACTTTTT
* * *
43636013 AGATAATACATCACACAGGCTCTTC
1 AGATAATACACCAAAAAGGCTCTTC
*
43636038 AGATAATTCACCAAAAAGGCTCTTC
1 AGATAATACACCAAAAAGGCTCTTC
* * *
43636063 AGATAATTCACTACAAAGGCT
1 AGATAATACACCAAAAAGGCT
43636084 TGGTTTGGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (25 bp):
AGATAATACACCAAAAAGGCTCTTC
Found at i:43637314 original size:48 final size:48
Alignment explanation
Indices: 43637209--43637625 Score: 205
Period size: 46 Copynumber: 8.8 Consensus size: 48
43637199 TTATTTGTGT
* *
43637209 GCTAGTGTAATA-CATGTCTGGGACAT-GCATTGGCTACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-T--ATTGAGATGAGA
* *
43637255 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGA
** *
43637303 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATG-AGA
* * * *
43637349 GCTAGTGTAA-AACATGTCTGAGACAT-GCATCGGT-TACGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAT-TGAGATGAGA
* * *
43637394 TC-AGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTA-T-AGA-G-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G---GTATTGAGATGAGA
* * ** ** *
43637441 G-TCAGTGTAAGACCATGTTTGGGACATGGTATCGACACAGATATGTGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGA--TGAGA
* * * ** * ** *
43637491 GCTAGTGTAAGACCATGTCTAGGACATGGCGTTGGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAT-GAGA
* * *
43637540 G-TCAGTGTAAGACCATGTTTGAGACATGGCAT-TG-AGTTGATGGAT-A-A
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTGA--GATGAGA
* *
43637587 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATT
43637626 ATACCCTATG
Statistics
Matches: 286, Mismatches: 51, Indels: 66
0.71 0.13 0.16
Matches are distributed among these distances:
44 8 0.03
45 19 0.07
46 69 0.24
47 62 0.22
48 61 0.21
49 31 0.11
50 35 0.12
51 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGA
Found at i:43637353 original size:46 final size:46
Alignment explanation
Indices: 43637209--43637518 Score: 217
Period size: 46 Copynumber: 6.6 Consensus size: 46
43637199 TTATTTGTGT
* * *
43637209 GCTAGTGTAATACATGTCTGGGACATGCATTGGCTAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGAGA
* * *
43637255 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGA
43637303 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-AGA
* * * *
43637349 GCTAGTGTAAAACATGTCTGAGACATGCATCGGTTACGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
* * * *
43637394 TC-AGTGTAAGACCATGTCTAGGACATGGCATCAGC-ACG-TAT-AGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAGA
* * * * *
43637438 GGTGTCAGTGTAAGACCATGTTTGGGACATGGTATCGAC-ACAGATATGTGAGA
1 -G-CT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGA--TGAGA
*
43637491 GCTAGTGTAAGACCATGTCTAGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
43637519 GCGTTGGCCT
Statistics
Matches: 212, Mismatches: 31, Indels: 39
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.00
44 10 0.05
45 17 0.08
46 67 0.32
47 31 0.15
48 53 0.25
49 3 0.01
50 24 0.11
51 1 0.00
52 2 0.01
53 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
Found at i:43643858 original size:21 final size:21
Alignment explanation
Indices: 43643797--43643859 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
43643787 AGCCGTGTGG
*
43643797 CTACTCCACATGCCCATCTAA
1 CTACTCCACATGCCCATGTAA
* **
43643818 CTACTGCACATGCCTGTGTAA
1 CTACTCCACATGCCCATGTAA
* *
43643839 CTACTTCATATGCCCATGTAA
1 CTACTCCACATGCCCATGTAA
43643860 GTAGACCATG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (21 bp):
CTACTCCACATGCCCATGTAA
Found at i:43646493 original size:37 final size:37
Alignment explanation
Indices: 43646447--43646524 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
43646437 AAAACACTAT
* *
43646447 AATATAACACGATAGTCCGCAACAAATGTACGACCTC
1 AATAAAACACGATAGTCCGCAACAAATGTACAACCTC
*
43646484 AATAAAACACGATAGTCCGCAACAGATGTACAACCTC
1 AATAAAACACGATAGTCCGCAACAAATGTACAACCTC
43646521 AATA
1 AATA
43646525 TATCTAGTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.44, C:0.26, G:0.13, T:0.18
Consensus pattern (37 bp):
AATAAAACACGATAGTCCGCAACAAATGTACAACCTC
Found at i:43649370 original size:15 final size:16
Alignment explanation
Indices: 43649350--43649386 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
43649340 AATTGAAATG
43649350 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
43649365 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
43649381 AT-AAAA
1 ATGAAAA
43649387 AAGAAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:43667393 original size:21 final size:21
Alignment explanation
Indices: 43667369--43667445 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
43667359 CGACCTGTAG
* *
43667369 CACGGGTGTGTCCCAGGGTCA
1 CACGGGCGTATCCCAGGGTCA
*
43667390 CACGGGCATATCCCAGGGTCA
1 CACGGGCGTATCCCAGGGTCA
43667411 CACGGGCGTATCCCAGGGTCA
1 CACGGGCGTATCCCAGGGTCA
*
43667432 CACGGGCGTGTCCC
1 CACGGGCGTATCCC
43667446 TCGGACTACA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.16
Consensus pattern (21 bp):
CACGGGCGTATCCCAGGGTCA
Found at i:43667886 original size:20 final size:20
Alignment explanation
Indices: 43667858--43667918 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
43667848 ATATGTGTAA
43667858 TAGAGGCACAAATGTGCAAT
1 TAGAGGCACAAATGTGCAAT
* * *
43667878 TAGAAGCACCAAA-GTGGAAA
1 TAGAGGCA-CAAATGTGCAAT
*
43667898 CAGAGGCACAAATGTTGCAAT
1 TAGAGGCACAAATG-TGCAAT
43667919 CTCACACCAG
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
19 4 0.13
20 19 0.61
21 8 0.26
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (20 bp):
TAGAGGCACAAATGTGCAAT
Found at i:43667890 original size:21 final size:19
Alignment explanation
Indices: 43667850--43667918 Score: 50
Period size: 20 Copynumber: 3.5 Consensus size: 19
43667840 GGCATCAAAT
* *
43667850 ATGTGTAATAGAGGCACAA
1 ATGTGCAATAGAAGCACAA
43667869 ATGTGCAATTAGAAGCACCAA
1 ATGTGCAA-TAGAAGCA-CAA
* * *
43667890 A-GTGGAAACAGAGGCACAA
1 ATGT-GCAATAGAAGCACAA
43667909 ATGTTGCAAT
1 ATG-TGCAAT
43667919 CTCACACCAG
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
19 11 0.29
20 19 0.50
21 8 0.21
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (19 bp):
ATGTGCAATAGAAGCACAA
Found at i:43668896 original size:42 final size:42
Alignment explanation
Indices: 43668838--43668931 Score: 179
Period size: 42 Copynumber: 2.2 Consensus size: 42
43668828 GGTGTAGGGG
43668838 ACACACGGCCGAACGACACGCCTATGGGGCTGACCGTGTGTC
1 ACACACGGCCGAACGACACGCCTATGGGGCTGACCGTGTGTC
*
43668880 ACACACGGCCGAACGACATGCCTATGGGGCTGACCGTGTGTC
1 ACACACGGCCGAACGACACGCCTATGGGGCTGACCGTGTGTC
43668922 ACACACGGCC
1 ACACACGGCC
43668932 TAGACACATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.22, C:0.34, G:0.30, T:0.14
Consensus pattern (42 bp):
ACACACGGCCGAACGACACGCCTATGGGGCTGACCGTGTGTC
Found at i:43687929 original size:26 final size:26
Alignment explanation
Indices: 43687899--43687954 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
43687889 TGAAATTCCC
43687899 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
43687925 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
43687951 ATCA
1 ATCA
43687955 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:43693389 original size:25 final size:26
Alignment explanation
Indices: 43693352--43693401 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
43693342 TCAAACATGC
43693352 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
43693378 ATTTCGGT-AATTTATCTCTAGGGG
1 ATTTAGGTCAATTTAACCCTAGGGG
43693402 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:43694920 original size:26 final size:26
Alignment explanation
Indices: 43694890--43694971 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
43694880 TGAAATTCCC
43694890 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
43694916 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
43694942 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
43694968 ATCA
1 ATCA
43694972 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:43695366 original size:15 final size:15
Alignment explanation
Indices: 43695346--43695375 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
43695336 TTCAATAGGA
43695346 TATGCATAATTAGTT
1 TATGCATAATTAGTT
43695361 TATGCATAATTAGTT
1 TATGCATAATTAGTT
43695376 CAACATGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
TATGCATAATTAGTT
Found at i:43699999 original size:38 final size:38
Alignment explanation
Indices: 43699919--43700054 Score: 166
Period size: 38 Copynumber: 3.5 Consensus size: 38
43699909 GAATCCAGTC
* * * *
43699919 ACCAGCACAAAACCTGCAGGACTTTAAGCTCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
*
43699959 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
* **
43699997 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
43700035 ACCAGCA-TATAGCCTGCGGG
1 ACCAGCACTA-AGCCTGCGGG
43700055 TCTTTAATCC
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 62 0.73
39 5 0.06
40 17 0.20
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:43701667 original size:30 final size:31
Alignment explanation
Indices: 43701586--43701668 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
43701576 TCAGTTTCGA
*
43701586 CATAT-ACTGGGCCGAATCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
43701616 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
43701647 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
43701669 ACTGTAAGCG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 17 0.35
31 32 0.65
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:43701916 original size:25 final size:25
Alignment explanation
Indices: 43701888--43701957 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
43701878 CTCTTTTAAT
* *
43701888 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
43701913 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
43701938 AATTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
43701958 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:43702829 original size:27 final size:27
Alignment explanation
Indices: 43702767--43702844 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
43702757 GGGCATATTC
*
43702767 GTCATTTTACCATACAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
* *
43702794 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
43702821 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
43702845 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:43702915 original size:27 final size:28
Alignment explanation
Indices: 43702885--43702992 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 28
43702875 GTAAATCTAC
43702885 AAACCAAGGGTATTT-TAGTAATTTTGT
1 AAACCAAGGGTATTTCTAGTAATTTTGT
43702912 AAACCAAGGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTCTAGTAATTTTGT
*
43702938 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTTCTAGTAATTTTGT
* *
43702968 AAA-TAAGGGGTATTT-TGGTAATTTT
1 AAACCAA-GGGTATTTCTAGTAATTTT
43702993 ACAAATTGAG
Statistics
Matches: 71, Mismatches: 2, Indels: 16
0.80 0.02 0.18
Matches are distributed among these distances:
26 4 0.06
27 38 0.54
28 8 0.11
29 20 0.28
30 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTAGTAATTTTGT
Found at i:43702920 original size:54 final size:54
Alignment explanation
Indices: 43702862--43703071 Score: 185
Period size: 54 Copynumber: 3.9 Consensus size: 54
43702852 TTTCATCCTA
* * * *
43702862 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAC
* * *
43702916 CAAGGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAA-
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAAC
* *** * ***
43702971 TAAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAC
* *
43703026 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 CAAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT
43703072 CTACCCTATA
Statistics
Matches: 127, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
53 1 0.01
54 72 0.57
55 18 0.14
56 35 0.28
57 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:43702998 original size:27 final size:26
Alignment explanation
Indices: 43702948--43703099 Score: 135
Period size: 27 Copynumber: 5.7 Consensus size: 26
43702938 AGAAAGTCAA
**
43702948 GGGTATTTCT-GTAATTTTGTAAATAAG
1 GGGTATTT-TGGTAATTTTACAAAT-AG
*
43702975 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAATAG
* * *
43703001 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAA-TAG
*
43703029 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
* **
43703056 GGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTTGGTAATTTTA-CAAATAG
**
43703083 GGGTATTTCAGTAATTT
1 GGGTATTTTGGTAATTT
43703100 CACATCAAGG
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.02
27 98 0.95
28 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:43703210 original size:27 final size:27
Alignment explanation
Indices: 43703107--43703193 Score: 138
Period size: 27 Copynumber: 3.2 Consensus size: 27
43703097 TTTCACATCA
* * *
43703107 AGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTCTATAAATCG
*
43703134 AGGGTAAAATAGTAATTCTATAAATCA
1 AGGGTAAAATAGTAATTCTATAAATCG
43703161 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTAAAATAGTAATTCTATAAATCG
43703188 AGGGTA
1 AGGGTA
43703194 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.30
Consensus pattern (27 bp):
AGGGTAAAATAGTAATTCTATAAATCG
Found at i:43703231 original size:27 final size:27
Alignment explanation
Indices: 43703145--43703220 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
43703135 GGGTAAAATA
* * *** *
43703145 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGCACTTTG
*
43703172 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGCACTTTG
* *
43703199 GTAATTTTATAAGTCGAGGGCA
1 GTAATTCTATAAATCGAGGGCA
43703221 TTTCTGTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGCACTTTG
Found at i:43711269 original size:38 final size:38
Alignment explanation
Indices: 43711186--43711308 Score: 174
Period size: 38 Copynumber: 3.2 Consensus size: 38
43711176 GAATCCAGTC
* ***
43711186 ACCAGCACAAAACCTGCGGGACTTTAAGCTTAGATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
43711226 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
43711264 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
43711302 ACCAGCA
1 ACCAGCA
43711309 TATAGCCTAC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
38 52 0.69
39 5 0.07
40 18 0.24
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:43711316 original size:38 final size:37
Alignment explanation
Indices: 43711218--43711321 Score: 154
Period size: 38 Copynumber: 2.7 Consensus size: 37
43711208 TTTAAGCTTA
*
43711218 GATATAATACCAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCA-TAAGCCTGCGGGATTTAACCCG
*
43711256 GATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCA-TAAGCCTGCGGGATTTAACCCG
*
43711294 GATATAATACCAGCATATAGCCTACGGG
1 GATATAATACCAGCATA-AGCCTGCGGG
43711322 TCTTTGAGCC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 1 0.02
38 60 0.98
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (37 bp):
GATATAATACCAGCATAAGCCTGCGGGATTTAACCCG
Found at i:43717448 original size:49 final size:49
Alignment explanation
Indices: 43717387--43717561 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
43717377 CTGGTACGCA
*
43717387 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACG
* * * * * * * *
43717436 TAGTAGCGTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCTAGTACACG
*
43717487 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACG
43717536 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
43717562 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 65 0.61
50 2 0.02
51 39 0.37
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACG
Found at i:43717533 original size:100 final size:100
Alignment explanation
Indices: 43717380--43717566 Score: 347
Period size: 100 Copynumber: 1.9 Consensus size: 100
43717370 AAGCTATCTG
*
43717380 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCGT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCCT
43717445 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
66 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
* *
43717480 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCCT
43717545 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
43717567 CCTCACAATA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCACAGTTTTCGA
Found at i:43722488 original size:21 final size:22
Alignment explanation
Indices: 43722464--43722507 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
43722454 ACCTAAGATG
*
43722464 TGAATTGAATTAAATTGA-GTA
1 TGAAATGAATTAAATTGACGTA
*
43722485 TGAAATGGATTAAATTGACGTA
1 TGAAATGAATTAAATTGACGTA
43722507 T
1 T
43722508 TAGATTAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.36
Consensus pattern (22 bp):
TGAAATGAATTAAATTGACGTA
Found at i:43723138 original size:24 final size:24
Alignment explanation
Indices: 43723078--43723242 Score: 81
Period size: 24 Copynumber: 6.9 Consensus size: 24
43723068 TTCCCGTTAC
* * *
43723078 ATGGCTCTTTGTAAGCTTCTTGAT
1 ATGGCTCTTTGTGAGCTTCCTAAT
*
43723102 A-GGCTCTTCGTGAGCTTCCTAAT
1 ATGGCTCTTTGTGAGCTTCCTAAT
* * *
43723125 ATGGTTCTTTGTGAACTTCCCAATT
1 ATGGCTCTTTGTGAGCTTCCTAA-T
* * *
43723150 ATTGCTC-TTATGAGCTTCTCGTTAT
1 ATGGCTCTTTGTGAGCTTC-C-TAAT
* * * * *
43723175 ATAGC-C-TGGATAAACTTCCCAAT
1 ATGGCTCTTTG-TGAGCTTCCTAAT
* *
43723198 A-GGCTCTTTGCGAGCTTCTTGAA-
1 ATGGCTCTTTGTGAGCTTCCT-AAT
*
43723221 ATGGCTCTATGTGAGCTTCCTA
1 ATGGCTCTTTGTGAGCTTCCTA
43723243 TGATAAGGCT
Statistics
Matches: 101, Mismatches: 31, Indels: 19
0.67 0.21 0.13
Matches are distributed among these distances:
22 2 0.02
23 30 0.30
24 50 0.50
25 18 0.18
26 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (24 bp):
ATGGCTCTTTGTGAGCTTCCTAAT
Found at i:43725971 original size:40 final size:39
Alignment explanation
Indices: 43725781--43725964 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
43725771 CGAATGATGT
* * * *
43725781 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
43725821 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
43725861 CCGGCCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
43725899 TCCGGGTTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
43725940 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
43725965 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:43725986 original size:79 final size:79
Alignment explanation
Indices: 43725833--43725997 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
43725823 GGACTAAGAT
* * **
43725833 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGCCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGAATTTGTGCGAGTTACTAATACCGGCCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
43725898 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
43725912 CCGAAGGAATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGAATTTGTGCGAGTTACTAAT-ACCGGCCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
43725975 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
43725991 CCGAAGG
1 CCGAAGG
43725998 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGAATTTGTGCGAGTTACTAATACCGGCCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:43730866 original size:49 final size:47
Alignment explanation
Indices: 43730787--43731287 Score: 753
Period size: 47 Copynumber: 10.6 Consensus size: 47
43730777 TATTTGAATA
*
43730787 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
43730834 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
43730883 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
43730932 AATGTGAAAGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
43730979 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43731028 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
43731075 AATGTGAACA-TG--CATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43731120 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43731167 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
43731214 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
43731261 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
43731288 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 18, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
45 43 0.10
46 1 0.00
47 244 0.57
49 139 0.32
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:43730895 original size:96 final size:94
Alignment explanation
Indices: 43730787--43731287 Score: 753
Period size: 96 Copynumber: 5.3 Consensus size: 94
43730777 TATTTGAATA
*
43730787 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
43730852 TATGTGATAAGGCCTAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
43730883 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
43730948 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
43730979 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
43731043 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43731075 AATGTGAACA-TG--CATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
43731136 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43731167 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
43731231 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
43731261 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
43731288 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 16, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
92 91 0.24
93 2 0.01
94 94 0.25
96 146 0.38
97 2 0.01
98 46 0.12
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:43738096 original size:39 final size:40
Alignment explanation
Indices: 43738000--43738180 Score: 183
Period size: 40 Copynumber: 4.5 Consensus size: 40
43737990 ATGATGTCCG
* * * *
43738000 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCA
*
43738039 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCA
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* **
43738080 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* * *
43738119 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TAAATCCA
*
43738159 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
43738181 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 35 0.29
40 72 0.60
41 13 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:43738202 original size:79 final size:78
Alignment explanation
Indices: 43738049--43738213 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
43738039 GGACTAAGAT
**
43738049 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAA-TCCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
43738114 ATCTGGGTTAAGTC
65 ATCTCGGTTAAATC
* * *
43738128 CCGAAGGCATTTGTGCGAGTTACTTTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTAC--TAATCCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
43738191 TATATC-CGGTTAAATT
62 TAAATCTCGGTTAAATC
43738207 CCGAAGG
1 CCGAAGG
43738214 TACGTGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
79 47 0.64
80 23 0.32
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATCCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCTCGGTTAAATC
Found at i:43743261 original size:5 final size:5
Alignment explanation
Indices: 43743251--43743278 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
43743241 TATCTTCTTG
43743251 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
43743279 GAACACATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:43759053 original size:25 final size:25
Alignment explanation
Indices: 43759025--43759073 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
43759015 ACTTGCCTTA
43759025 GTCTATACTTAGTATGGTTAATTAG
1 GTCTATACTTAGTATGGTTAATTAG
43759050 GTCTATACTTAGTATGGTTAATTA
1 GTCTATACTTAGTATGGTTAATTA
43759074 ATTATCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (25 bp):
GTCTATACTTAGTATGGTTAATTAG
Found at i:43761320 original size:30 final size:31
Alignment explanation
Indices: 43761284--43761364 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
43761274 CGTATGGGCT
*
43761284 ACATGGGCGTGTAAGCCCATAC-GGCAGGCC
1 ACATGGGCGTGTAAGCCCATACGGGAAGGCC
*
43761314 ACATGGGCGTGTAAGCCCACACGGGAAGGCC
1 ACATGGGCGTGTAAGCCCATACGGGAAGGCC
* *
43761345 ACATGGGTGTGTGAGCCCAT
1 ACATGGGCGTGTAAGCCCAT
43761365 TTTTTTGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 21 0.47
31 24 0.53
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.15
Consensus pattern (31 bp):
ACATGGGCGTGTAAGCCCATACGGGAAGGCC
Found at i:43764639 original size:27 final size:27
Alignment explanation
Indices: 43764603--43764893 Score: 300
Period size: 27 Copynumber: 10.9 Consensus size: 27
43764593 AATACCCCAA
* * *
43764603 TTGTAAAATTACCAAAGTACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * * *
43764630 TTATAAAATTACCAAAATATCGTC-AA
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
43764656 TTATAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
*
43764683 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACCAAAATACCCTCGA-T
* * * * *
43764710 TTGCAAAATTACTAAAATACCTTTGCT
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
43764737 TTGTAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
43764764 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
43764791 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
43764818 TTGTAAAATTACCAAAATACCGTTGA-
1 TTGTAAAATTACCAAAATACCCTCGAT
*
43764844 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
43764871 TTATAAAATTACCGAAATACCCT
1 TTGTAAAATTACCAAAATACCCT
43764894 TGTAGGGTAG
Statistics
Matches: 213, Mismatches: 47, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
26 45 0.21
27 168 0.79
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAT
Found at i:43764773 original size:81 final size:79
Alignment explanation
Indices: 43764583--43764891 Score: 345
Period size: 81 Copynumber: 3.9 Consensus size: 79
43764573 TTAATTTACC
* * *
43764583 AAATTACTGAAATACCC-CAATTGTAAAATTACCAAAGTACCCTTGGTTTATAAAATTACCAAAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCAAAA
* * * *
43764647 TATCGT-CAATTATA
66 TACCTTGC-TTTGTA
* ** *
43764661 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTCAGTTTGCAAAATTACTAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACC-AAAGTACCCTCGGTTTATAAAATTACCAA
43764725 AATACCTTTGCTTTGTA
64 AATACC-TTGCTTTGTA
* *
43764742 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCAAA
* *
43764807 ATATCCTCGATTTGTA
65 ATA-CCTTGCTTTGTA
* * * * * * *
43764823 AAATTACCAAAATACCGTTGATTGTAAAATTACTAAAATACCCTCGATTTATAAAATTACCGAAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCAAAA
43764888 TACC
66 TACC
43764892 CTTGTAGGGT
Statistics
Matches: 196, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
78 16 0.08
79 4 0.02
80 82 0.42
81 91 0.46
82 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (79 bp):
AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCAAAA
TACCTTGCTTTGTA
Found at i:43764907 original size:27 final size:27
Alignment explanation
Indices: 43764877--43765558 Score: 826
Period size: 27 Copynumber: 25.3 Consensus size: 27
43764867 CGATTTATAA
*
43764877 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
43764904 AATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
43764931 AATTACCGAAATACCCCTGTAATGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
43764958 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
43764985 AATTATTGAAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43765012 AATTACTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43765039 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
43765066 AATTATCGAAATACCCTTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
43765093 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
43765120 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
43765147 AATTATTGAAATGCCCCTATGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43765174 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
43765201 AAATATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43765228 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43765255 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
43765282 AAATACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
43765309 AAACATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
43765336 AAATACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43765363 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
43765390 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
43765417 AAATATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
43765444 AATT-CCTGAAATACCCCTGTAGGGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
**
43765471 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43765498 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
43765525 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
43765552 AATTACC
1 AATTACC
43765559 ATTTTACCCG
Statistics
Matches: 576, Mismatches: 77, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 574 1.00
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:43764910 original size:161 final size:160
Alignment explanation
Indices: 43764583--43764920 Score: 423
Period size: 161 Copynumber: 2.1 Consensus size: 160
43764573 TTAATTTACC
**
43764583 AAATTACTGAAATACCC-CAATTGTAAAATTACCAAAGTACCCTTGGTTTATAAAATTACCAAAA
1 AAATTACTGAAATACCCTCAATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCAAAA
* * *
43764647 TATCGTCAATTATAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAGTTT
66 TATCCTCAATTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTT
* * * **
43764712 GCAAAATTACTAAAATACCTTTGCTTTGTA
131 ACAAAATTACCAAAATACCCTTGCTGGGTA
* * *
43764742 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTC-AATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCAAA
* * * * *
43764807 ATATCCTCGATTTGTAAAATTACCAAAATACCGTTGA-TTGTAAAATTACTAAAATACCCTC-GA
65 ATATCCTC-AATTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAG-
* *
43764870 TTTATAAAATTACCGAAATACCCTTG-TAGGGTA
128 TTTACAAAATTACCAAAATACCCTTGCT-GGGTA
*
43764903 GAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
43764921 TATAAGGTAG
Statistics
Matches: 152, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
159 16 0.11
160 3 0.02
161 110 0.72
162 23 0.15
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (160 bp):
AAATTACTGAAATACCCTCAATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCAAAA
TATCCTCAATTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTT
ACAAAATTACCAAAATACCCTTGCTGGGTA
Found at i:43765828 original size:27 final size:27
Alignment explanation
Indices: 43765789--43765864 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
43765779 AAGCGTCCTA
*
43765789 GTGGCTATGCCACAAATATCTGT-TCTG
1 GTGGCTATACCAC-AATATCTGTATCTG
*
43765816 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTATACCACAATATCTGTATCTG
* * **
43765843 GTGACTTTGTCACAATATCTGT
1 GTGGCTATACCACAATATCTGT
43765865 TGACCGATCG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.21
27 33 0.79
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTATACCACAATATCTGTATCTG
Found at i:43765975 original size:26 final size:25
Alignment explanation
Indices: 43765945--43766018 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
43765935 ATTATAGACC
43765945 TGTTATCAATGGCTGAGTGCCGGTCA
1 TGTTATCAA-GGCTGAGTGCCGGTCA
* *
43765971 TGTTACTGAAGGCTGAGTGTCGGTCA
1 TGTTA-TCAAGGCTGAGTGCCGGTCA
* *
43765997 TGTTACCGAAGGCTGTGTGCCG
1 TGTTATC-AAGGCTGAGTGCCG
43766019 TTATTGTAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 37 0.93
27 3 0.08
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.30
Consensus pattern (25 bp):
TGTTATCAAGGCTGAGTGCCGGTCA
Found at i:43766057 original size:104 final size:104
Alignment explanation
Indices: 43765877--43766096 Score: 350
Period size: 104 Copynumber: 2.1 Consensus size: 104
43765867 ACCGATCGAT
* * *
43765877 GGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCGGTTATTGTAGGCTTCGTGCTGATTATAG
1 GGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCGTTATTGTAGGCTTCATGCCGATTATAG
* * **
43765942 ACCTGTTATCAATGGCTGAGTGCCGGTCATGTTACTGAA
66 ACCCGTTATCAATAGCTGAGTGCCGGTCATGTTACCAAA
* *
43765981 GGCTGAGTGTCGGTCATGTTACCGAAGGCTGTGTGCCGTTATTGTAGGCTTCATGCCGATTATAG
1 GGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCGTTATTGTAGGCTTCATGCCGATTATAG
43766046 ACCCGTTATCAATAGCTGAGTGCCGGTCATGTTACCAAA
66 ACCCGTTATCAATAGCTGAGTGCCGGTCATGTTACCAAA
*
43766085 GGCTGTGTGCCG
1 GGCTGAGTGCCG
43766097 TTATTGTGGG
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
104 105 1.00
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
GGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCGTTATTGTAGGCTTCATGCCGATTATAG
ACCCGTTATCAATAGCTGAGTGCCGGTCATGTTACCAAA
Found at i:43766137 original size:19 final size:20
Alignment explanation
Indices: 43766091--43766137 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
43766081 CAAAGGCTGT
*
43766091 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
**
43766111 GTATCGATATTGT-GGCTTC
1 GTGCCGATATTGTGGGCTTC
43766130 GTGCCGAT
1 GTGCCGAT
43766138 TATAGACCCG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.11, C:0.19, G:0.32, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:43766211 original size:27 final size:27
Alignment explanation
Indices: 43766181--43766253 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
43766171 ATTTTGTTAA
* *
43766181 GTGGCTTTGTCACATTATCTG-ATTCTG
1 GTGGCTCTGTCACAATATCTGTA-TCTG
*
43766208 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGTCACAATATCTGTATCTG
* *
43766235 GTGACTCTGTCATAATATC
1 GTGGCTCTGTCACAATATC
43766254 AGTTTTGGCA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGTCACAATATCTGTATCTG
Found at i:43770816 original size:27 final size:27
Alignment explanation
Indices: 43770778--43770830 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
43770768 TTTCGAGGTC
43770778 AAAATTTTCTTTTAGGAGATAGAGTTT
1 AAAATTTTCTTTTAGGAGATAGAGTTT
*
43770805 AAAATTTTCTTTTAGGGGATAGAGTT
1 AAAATTTTCTTTTAGGAGATAGAGTT
43770831 GTAACGCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (27 bp):
AAAATTTTCTTTTAGGAGATAGAGTTT
Found at i:43771918 original size:18 final size:18
Alignment explanation
Indices: 43771879--43771920 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
43771869 CAATTGGGCC
43771879 GTGTGGGCCACACGAGCT
1 GTGTGGGCCACACGAGCT
*
43771897 -TGTGGGCCCACAC-AGGT
1 GTGTGGG-CCACACGAGCT
43771914 GTGTGGG
1 GTGTGGG
43771921 ATTCTGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.14, C:0.24, G:0.43, T:0.19
Consensus pattern (18 bp):
GTGTGGGCCACACGAGCT
Found at i:43776748 original size:47 final size:47
Alignment explanation
Indices: 43776697--43777015 Score: 523
Period size: 47 Copynumber: 6.7 Consensus size: 47
43776687 TTAGGATTCT
* * *
43776697 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
43776744 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
43776793 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
43776840 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
43776887 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
43776934 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
43776981 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
43777016 TCCCGAAAGG
Statistics
Matches: 257, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 211 0.82
49 45 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:43777184 original size:37 final size:37
Alignment explanation
Indices: 43777134--43777249 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
43777124 CCGAGCTCTA
43777134 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
43777171 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
43777208 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
43777245 AAGAC
1 AAGAC
43777250 TTCGTAATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:43779802 original size:15 final size:16
Alignment explanation
Indices: 43779782--43779811 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43779772 TTGATCTCTC
43779782 TTTTT-AAATATTTAT
1 TTTTTAAAATATTTAT
43779797 TTTTTAAAATATTTA
1 TTTTTAAAATATTTA
43779812 CTATACTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTTAAAATATTTAT
Found at i:43781269 original size:169 final size:169
Alignment explanation
Indices: 43781036--43781379 Score: 679
Period size: 169 Copynumber: 2.0 Consensus size: 169
43781026 ATTTGAAAGG
43781036 GTTTAGGAAAAAATATTAGGCCCAAAAAGTGGGTTTGAGCAAAAAAATTAGGTCCGTTTAAAATA
1 GTTTAGGAAAAAATATTAGGCCCAAAAAGTGGGTTTGAGCAAAAAAATTAGGTCCGTTTAAAATA
43781101 TAGGTCGGGATTGGGTTTGAACATTTAATGCCCAAGCTCGGCCCAGCCCGACCTATTTTTAAGTT
66 TAGGTCGGGATTGGGTTTGAACATTTAATGCCCAAGCTCGGCCCAGCCCGACCTATTTTTAAGTT
43781166 TATAATATTTTATATTATGTTATTTTTATATATTATGTA
131 TATAATATTTTATATTATGTTATTTTTATATATTATGTA
43781205 GTTTAGGAAAAAATATTAGGCCCAAAAAGTGGGTTTGAGCAAAAAAATTAGGTCCGTTTAAAATA
1 GTTTAGGAAAAAATATTAGGCCCAAAAAGTGGGTTTGAGCAAAAAAATTAGGTCCGTTTAAAATA
43781270 TAGGTCGGGATTGGGTTTGAACATTTAATGCCCAAGCTCGGCCCAGCCCGACCTATTTTTAAGTT
66 TAGGTCGGGATTGGGTTTGAACATTTAATGCCCAAGCTCGGCCCAGCCCGACCTATTTTTAAGTT
43781335 TATAATATTTTATATTATGTTATTTTTATATATTATGTA
131 TATAATATTTTATATTATGTTATTTTTATATATTATGTA
*
43781374 ATTTAG
1 GTTTAG
43781380 AACACATTAA
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 174 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (169 bp):
GTTTAGGAAAAAATATTAGGCCCAAAAAGTGGGTTTGAGCAAAAAAATTAGGTCCGTTTAAAATA
TAGGTCGGGATTGGGTTTGAACATTTAATGCCCAAGCTCGGCCCAGCCCGACCTATTTTTAAGTT
TATAATATTTTATATTATGTTATTTTTATATATTATGTA
Found at i:43781378 original size:16 final size:18
Alignment explanation
Indices: 43781339--43781372 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43781329 TAAGTTTATA
43781339 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
43781356 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
43781373 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:43782977 original size:10 final size:10
Alignment explanation
Indices: 43782962--43782990 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
43782952 CTTGAGCTTC
43782962 TTCTTTTTTT
1 TTCTTTTTTT
43782972 TTC-TTTTTT
1 TTCTTTTTTT
43782981 TTCTTTTTTT
1 TTCTTTTTTT
43782991 ATCCGGAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:43785238 original size:7 final size:7
Alignment explanation
Indices: 43785226--43785256 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
43785216 CATGTGTTCT
43785226 TTTTTAA
1 TTTTTAA
43785233 TTTTTAA
1 TTTTTAA
43785240 TTTTTAA
1 TTTTTAA
43785247 TTTTTAA
1 TTTTTAA
43785254 TTT
1 TTT
43785257 CGAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTAA
Found at i:43796034 original size:33 final size:33
Alignment explanation
Indices: 43795988--43796056 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
43795978 AACTGGAAAG
*
43795988 TAAACTTACCGATTTTTTAGCATACATCCATAT
1 TAAACTTACCGATTTATTAGCATACATCCATAT
*
43796021 TAAACTTATCGATTTATTAGCATACATCCATAT
1 TAAACTTACCGATTTATTAGCATACATCCATAT
43796054 TAA
1 TAA
43796057 GCAATAAGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (33 bp):
TAAACTTACCGATTTATTAGCATACATCCATAT
Found at i:43806238 original size:40 final size:40
Alignment explanation
Indices: 43805935--43806224 Score: 474
Period size: 40 Copynumber: 7.3 Consensus size: 40
43805925 TCCTCGTTCA
* * * ** *
43805935 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43805974 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43806014 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43806054 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43806094 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43806134 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
43806174 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
43806214 AAGGCCTTCGG
1 AATGCCTTCGG
43806225 ATCTTAGTCC
Statistics
Matches: 239, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 33 0.14
40 206 0.86
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:43806286 original size:41 final size:41
Alignment explanation
Indices: 43806209--43806286 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
43806199 TTAGTATCTC
* * *
43806209 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43806250 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43806287 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:43813224 original size:15 final size:15
Alignment explanation
Indices: 43813204--43813235 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
43813194 TCTGTTTTCA
43813204 AAGTAAACCTTACCT
1 AAGTAAACCTTACCT
43813219 AAGTAAACCTTACCT
1 AAGTAAACCTTACCT
43813234 AA
1 AA
43813236 TTTGGGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.25, G:0.06, T:0.25
Consensus pattern (15 bp):
AAGTAAACCTTACCT
Found at i:43814271 original size:40 final size:40
Alignment explanation
Indices: 43813969--43814257 Score: 465
Period size: 40 Copynumber: 7.3 Consensus size: 40
43813959 TCCTCGTTCA
* * * ** *
43813969 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43814008 AATGCCTTC-GGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43814047 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43814087 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43814127 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
43814167 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
43814207 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
43814247 AAGGCCTTCGG
1 AATGCCTTCGG
43814258 ATCTTAGTCC
Statistics
Matches: 237, Mismatches: 11, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
38 23 0.10
39 18 0.08
40 196 0.83
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:43814319 original size:41 final size:41
Alignment explanation
Indices: 43814242--43814319 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
43814232 TTAGTATCTC
* * *
43814242 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43814283 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43814320 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:43817011 original size:32 final size:32
Alignment explanation
Indices: 43816975--43817051 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
43816965 TAGTACAGTG
*
43816975 TATAGGGTATTAAAAATGTAAATACAAATGAC
1 TATAGGGTATGAAAAATGTAAATACAAATGAC
*
43817007 TATAGGGTATGAAAAATGTAAATACGAATGAC
1 TATAGGGTATGAAAAATGTAAATACAAATGAC
*
43817039 TATAGGATATGAA
1 TATAGGGTATGAA
43817052 TATGCAAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.27
Consensus pattern (32 bp):
TATAGGGTATGAAAAATGTAAATACAAATGAC
Found at i:43817067 original size:31 final size:30
Alignment explanation
Indices: 43817001--43817099 Score: 108
Period size: 31 Copynumber: 3.2 Consensus size: 30
43816991 TGTAAATACA
* * *
43817001 AATGACTATAGGGTATGAAAAATGTAAATACG
1 AATGACTATA-GGTATG-AATATGCAAATATG
43817033 AATGACTATAGGATATGAATATGCAAATATG
1 AATGACTATAGG-TATGAATATGCAAATATG
** *
43817064 AATGGTTATAAGGTATGAATATGCAAAAATG
1 AATGACTAT-AGGTATGAATATGCAAATATG
43817095 AATGA
1 AATGA
43817100 TTGATGCACT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
31 41 0.71
32 17 0.29
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.27
Consensus pattern (30 bp):
AATGACTATAGGTATGAATATGCAAATATG
Found at i:43820091 original size:40 final size:39
Alignment explanation
Indices: 43820042--43820248 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 39
43820032 ACTTCAGTTC
* *
43820042 CCCTGAATGTACATACGTGCCCCTATTTGTACTTTGATA
1 CCCTGAATGCACATACGTGCCCCTATTTGTACTTCGATA
* * ** * ** *
43820081 CCTCTAAATGTAGGTACGTGTCGTTGTTTGTACTAT-GATA
1 CC-CTGAATGCACATACGTGCCCCTATTTGTACT-TCGATA
* * *
43820121 CCCCTGAATGCACACACGTGCCCTTATTTGTGCTTCGATA
1 -CCCTGAATGCACATACGTGCCCCTATTTGTACTTCGATA
* * * * *
43820161 TCCATGAATGCACATACATGCCCCTTTTTGTACTACGGTA
1 -CCCTGAATGCACATACGTGCCCCTATTTGTACTTCGATA
* *
43820201 CCCTTGAATGCACACATGTGCCCCTATTTGTACTTCGATA
1 CCC-TGAATGCACATACGTGCCCCTATTTGTACTTCGATA
43820241 CCTCTGAA
1 CC-CTGAA
43820249 AGCATTATAA
Statistics
Matches: 130, Mismatches: 32, Indels: 11
0.75 0.18 0.06
Matches are distributed among these distances:
39 5 0.04
40 121 0.93
41 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.34
Consensus pattern (39 bp):
CCCTGAATGCACATACGTGCCCCTATTTGTACTTCGATA
Found at i:43823794 original size:97 final size:96
Alignment explanation
Indices: 43823675--43823884 Score: 269
Period size: 97 Copynumber: 2.2 Consensus size: 96
43823665 GAGACACGAC
* ** * * * *
43823675 CGTGTAACCCATATTTCGAATTGTACATGGTTTAGGTACATGACTATGTCCTTGAGTGACATGGC
1 CGTGTGACCCATATTTCGAATTGTACACAGTTTAGGCACATGACCATGTCCCTGAGCGACATGGC
* * *
43823740 CTAGGCTTTGTCATACAGCCTGGTCACATGG-
66 CGAGGCTTTATCATACAGCCTGGCCA-ATGGT
*
43823771 CTGTGTGACCCATATTTTGAATTGTACACAGTTTAGGCACATGACCATGTCCCTGAGCGACATGG
1 C-GTGTGACCCATATTTCGAATTGTACACAGTTTAGGCACATGACCATGTCCCTGAGCGACATGG
* *
43823836 CCGGGGCTTTATCATACAGGCTGGCCAATGGT
65 CCGAGGCTTTATCATACAGCCTGGCCAATGGT
*
43823868 CGTGTGACCCTTATTTC
1 CGTGTGACCCATATTTC
43823885 CAAAATTTTT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
96 19 0.20
97 78 0.80
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (96 bp):
CGTGTGACCCATATTTCGAATTGTACACAGTTTAGGCACATGACCATGTCCCTGAGCGACATGGC
CGAGGCTTTATCATACAGCCTGGCCAATGGT
Found at i:43826766 original size:23 final size:24
Alignment explanation
Indices: 43826735--43826779 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
43826725 TTCAGGTCAC
*
43826735 GTAGTATCGGAAG-ATGACATAAGA
1 GTAGTATC-GAAGCAAGACATAAGA
43826759 GTAG-ATCGAAGCAAGACATAA
1 GTAGTATCGAAGCAAGACATAA
43826780 ACTATTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (24 bp):
GTAGTATCGAAGCAAGACATAAGA
Found at i:43834118 original size:23 final size:23
Alignment explanation
Indices: 43834087--43834138 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
43834077 TAAACATTTG
43834087 ATGCCTACGAGTCTTGCACCTCA
1 ATGCCTACGAGTCTTGCACCTCA
* * * *
43834110 ATGCTTACGGGTTTTGCACCTCG
1 ATGCCTACGAGTCTTGCACCTCA
43834133 ATGCCT
1 ATGCCT
43834139 TGGTGTGGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (23 bp):
ATGCCTACGAGTCTTGCACCTCA
Found at i:43836429 original size:19 final size:19
Alignment explanation
Indices: 43836399--43836443 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
43836389 TTTGGCCAAG
43836399 TATCGATA--TTTTTGAAA
1 TATCGATACCTTTTTGAAA
43836416 TATCGATACCTTTTTGAAA
1 TATCGATACCTTTTTGAAA
*
43836435 AAT-GATACC
1 TATCGATACC
43836444 AACATAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 8 0.32
18 6 0.24
19 11 0.44
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (19 bp):
TATCGATACCTTTTTGAAA
Found at i:43840769 original size:29 final size:29
Alignment explanation
Indices: 43840712--43840826 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
43840702 GTGAGTATGA
* * * *
43840712 ATATGAATGTGA-CTGGACCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
43840740 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
43840769 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
43840798 ATATGAATAT-AATTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
43840826 A
1 A
43840827 GATACAAGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 28 0.38
29 46 0.62
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:43845326 original size:29 final size:29
Alignment explanation
Indices: 43845291--43845381 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
43845281 GGACCTAACA
43845291 GGCCATATAAATGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* * *
43845320 GGTCATATACA-GTTGATTTGGGCGTAATG
1 GGCCATATAAATG-TGATTTGGGCCTAATG
* * *
43845349 GGCCATATGAATATGA-TTGGGCTTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
43845377 GGCCA
1 GGCCA
43845382 GATACAGGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (29 bp):
GGCCATATAAATGTGATTTGGGCCTAATG
Found at i:43846489 original size:17 final size:18
Alignment explanation
Indices: 43846456--43846490 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
43846446 TTTTAAGAAG
43846456 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
43846474 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
43846491 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:43847326 original size:196 final size:195
Alignment explanation
Indices: 43846968--43847359 Score: 676
Period size: 196 Copynumber: 2.0 Consensus size: 195
43846958 TGGAGGCGGT
*
43846968 CTTGTCCCCAATGGAATAAAAAACGGTCATTTAAACAAAAGCTCAAGGTTCATGTTGCTACTTGA
1 CTTGTCCCCAATGGAAAAAAAAACGGTCATTTAAACAAAAGCTCAAGGTTCATGTTGCTACTTGA
* * *
43847033 AGTAATAAGGATTCATTCGATAATGAAGATCAAGAAGTAGCCAACCTTTGTCGTATTGCCATTAA
66 AGAAATAAGGATTCATCCGATAATGAAGATCAAGAAGTAGCCAACCTTTGTCGTATGGCCATTAA
* * * *
43847098 TGATTCAAAGGTAACTTCTAGCTAATCAATTTCAATTTCCTATTCTTTTTTTGAGTTACAAGATG
131 TGATCCAAAGGTAACTTCTAACTAATCAATTTCAATTTCCTATTCTCTTTATGAGTTACAAGATG
* *
43847163 CTTGTCCCCAATGGAAGAAAAAAAGGGTCATTTAAACAAAAGCTCAAGGTTCATGTTGCTAGTTG
1 CTTGTCCCCAATGGAA-AAAAAAACGGTCATTTAAACAAAAGCTCAAGGTTCATGTTGCTACTTG
43847228 AAGAAATAAGGATTCATCCGATAATGAAGATCAAGAAGTAGCCAACCTTTGTCGTATGGCCATTA
65 AAGAAATAAGGATTCATCCGATAATGAAGATCAAGAAGTAGCCAACCTTTGTCGTATGGCCATTA
*
43847293 ATGATCCAAAGGTAACTTCTAACTAATCAATTTCAATTTCCTATTCTCTTTATGAGTTGCAAGAT
130 ATGATCCAAAGGTAACTTCTAACTAATCAATTTCAATTTCCTATTCTCTTTATGAGTTACAAGAT
43847358 G
195 G
43847359 C
1 C
43847360 CTATGATGAA
Statistics
Matches: 185, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
195 16 0.09
196 169 0.91
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (195 bp):
CTTGTCCCCAATGGAAAAAAAAACGGTCATTTAAACAAAAGCTCAAGGTTCATGTTGCTACTTGA
AGAAATAAGGATTCATCCGATAATGAAGATCAAGAAGTAGCCAACCTTTGTCGTATGGCCATTAA
TGATCCAAAGGTAACTTCTAACTAATCAATTTCAATTTCCTATTCTCTTTATGAGTTACAAGATG
Found at i:43851373 original size:48 final size:48
Alignment explanation
Indices: 43851315--43851489 Score: 183
Period size: 48 Copynumber: 3.7 Consensus size: 48
43851305 CCACATTGAG
* * *
43851315 AGCCAGTGTAAGACATGTCTGGGACATACATTGGCCTCGAGATATACC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
* * ** * *
43851363 AGCCAGTGTAAGACATGTCTGGGACATGCACCGGCATTAAGAT-GA-G
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
* * *
43851409 AGCTAGTGTAAGATAAGTCTGGGACATGCATCGGCCTCGAGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
* * * *
43851457 AGCTAGTGTAAGACGTATTTGGGACATGGCATC
1 AGCCAGTGTAAGACATGTCTGGGACAT-GCATC
43851490 AGCTTGTTGT
Statistics
Matches: 102, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
46 36 0.35
47 2 0.02
48 59 0.58
49 5 0.05
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
Found at i:43851433 original size:94 final size:94
Alignment explanation
Indices: 43851311--43851484 Score: 258
Period size: 94 Copynumber: 1.9 Consensus size: 94
43851301 TCGACCACAT
* * *
43851311 TGAGAGCCAGTGTAAGACATGTCTGGGACATACATTGGCCTCGAGATATACCAGCCAGTGTAAGA
1 TGAGAGCCAGTGTAAGACAAGTCTGGGACATACATCGGCCTCGAGATATACAAGCCAGTGTAAGA
*
43851376 CATGTCTGGGACATGCACCGGCATTAAGA
66 CATATCTGGGACATGCACCGGCATTAAGA
* * * *
43851405 TGAGAGCTAGTGTAAGATAAGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACAAGTCTGGGACATACATCGGCCTCGAGATATACAAGCCAGTGTAAGA
* *
43851470 CGTATTTGGGACATG
66 CATATCTGGGACATG
43851485 GCATCAGCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (94 bp):
TGAGAGCCAGTGTAAGACAAGTCTGGGACATACATCGGCCTCGAGATATACAAGCCAGTGTAAGA
CATATCTGGGACATGCACCGGCATTAAGA
Found at i:43851573 original size:93 final size:93
Alignment explanation
Indices: 43851461--43851678 Score: 230
Period size: 98 Copynumber: 2.3 Consensus size: 93
43851451 TATACAAGCT
** * * **
43851461 AGTGTAAGACGTATTTGGGACATGGCATCAG-CT-TGT-TGTGTGTCAATGTAAGACCTGTCTAA
1 AGTGTAAGACCCATCTGGGACATGGCATCAGCCTATATATGAATGTCAATGTAAGACCTGTCTAA
43851523 GACATGGCATCGACATCGTTAGATGAG-AGCC
66 GACATGGCATCGAC-T--TT-GATGAGCAGCC
* *
43851554 AGTGTAAGACCCATCTGGGACACGGCATCAGCCTCAATATATGAATGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACCCATCTGGGACATGGCATCAGCCT--ATATATGAATGTCAATGTAAGACCTGTCT
* *
43851619 AGGACATGGCATCGACTTTGATGTGCTAGCC
64 AAGACATGGCATCGACTTTGATGAGC-AGCC
43851650 AGTGTAAGA-CCATGTCTGGGACATGGCAT
1 AGTGTAAGACCCA--TCTGGGACATGGCAT
43851679 TGGCATCTTA
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
93 27 0.26
94 7 0.07
95 5 0.05
96 13 0.12
97 17 0.16
98 36 0.34
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACCCATCTGGGACATGGCATCAGCCTATATATGAATGTCAATGTAAGACCTGTCTAA
GACATGGCATCGACTTTGATGAGCAGCC
Found at i:43857419 original size:20 final size:20
Alignment explanation
Indices: 43857396--43857453 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
43857386 TAAACATGGT
43857396 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
43857416 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
*
43857436 ATGTATGATATACACATG
1 ATGTATGATATGCACATG
43857454 GTGTATTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:43857534 original size:23 final size:23
Alignment explanation
Indices: 43857504--43857576 Score: 101
Period size: 23 Copynumber: 3.1 Consensus size: 23
43857494 AGGAAGTGCA
*
43857504 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
43857527 AAAGGGCTTATGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
* *
43857550 AAAAGGGATTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
43857574 AAA
1 AAA
43857577 AGAGGCTAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 24 0.55
24 20 0.45
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:43857564 original size:24 final size:24
Alignment explanation
Indices: 43857503--43857597 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
43857493 GAGGAAGTGC
*
43857503 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
43857527 -AAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
43857550 AAAAGGGATTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
43857574 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
43857598 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 21 0.35
24 29 0.48
25 10 0.17
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:43863073 original size:48 final size:48
Alignment explanation
Indices: 43862958--43863131 Score: 203
Period size: 48 Copynumber: 3.6 Consensus size: 48
43862948 TATGTGTGCT
* * * *
43862958 AGTGTAAGACATGTCTGGGACATGCA-TCGACCAC-AAAT-TGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTAG-CCTCGAGATAT-ACAAGCC
*
43863004 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATATACAAGCC
* ** *
43863052 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATATACAAGCC
*
43863100 AGTGTAAGACCTGTCTGGGACATGGCATTAGC
1 AGTGTAAGACATGTCTGGGACAT-GCATTAGC
43863132 TTGTTGCGTG
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
46 29 0.26
47 6 0.05
48 69 0.63
49 6 0.05
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATATACAAGCC
Found at i:43869799 original size:40 final size:39
Alignment explanation
Indices: 43869735--43869946 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
43869725 TCTTCGGAAT
* *
43869735 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
43869774 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
43869814 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
43869854 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
43869894 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
43869934 TTAGCCCGGATAT
1 TTAGCCCGGATAT
43869947 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:43869862 original size:80 final size:80
Alignment explanation
Indices: 43869735--43869946 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
43869725 TCTTCGGAAT
* * * * *
43869735 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
43869799 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
43869814 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
43869879 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
43869894 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
43869947 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:43877867 original size:40 final size:39
Alignment explanation
Indices: 43877803--43878014 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
43877793 TCTTCGGAAT
* *
43877803 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
43877842 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
43877882 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
43877922 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
43877962 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
43878002 TTAGCCCGGATAT
1 TTAGCCCGGATAT
43878015 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:43877930 original size:80 final size:80
Alignment explanation
Indices: 43877803--43878014 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
43877793 TCTTCGGAAT
* * * * *
43877803 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
43877867 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
43877882 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
43877947 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
43877962 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
43878015 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:43884822 original size:25 final size:25
Alignment explanation
Indices: 43884788--43884836 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
43884778 TTATAATATG
*
43884788 AAAAAAGACTATTTTGCCCCTAGGT
1 AAAAAAGACTATTTTACCCCTAGGT
* *
43884813 AAAAATGACTGTTTTACCCCTAGG
1 AAAAAAGACTATTTTACCCCTAGG
43884837 GTTTAATCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (25 bp):
AAAAAAGACTATTTTACCCCTAGGT
Found at i:43884992 original size:24 final size:24
Alignment explanation
Indices: 43884960--43885006 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
43884950 AGGAAGTGCG
**
43884960 AAAAAGGCTTTGCC-CCAGTTATT
1 AAAAAGGCTAGGCCTCCAGTTATT
43884983 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAA-AGGCTAGGCCTCCAGTTAT
43885007 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 8 0.40
25 8 0.40
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTAGGCCTCCAGTTATT
Found at i:43892748 original size:21 final size:21
Alignment explanation
Indices: 43892723--43892783 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
43892713 ATATTGTTAT
* *
43892723 ACATGATATGGTATGGTATGC
1 ACATGATATGCTATGATATGC
* *
43892744 ACATGGTATGTTATGATATGC
1 ACATGATATGCTATGATATGC
43892765 ACATGATATGCTATGATAT
1 ACATGATATGCTATGATAT
43892784 ACTCATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (21 bp):
ACATGATATGCTATGATATGC
Found at i:43900075 original size:13 final size:13
Alignment explanation
Indices: 43900051--43900116 Score: 71
Period size: 13 Copynumber: 4.9 Consensus size: 13
43900041 ATACAAATTG
43900051 GTTATATGGAAATA
1 GTTATAT-GAAATA
*
43900065 GTTATATGAAATG
1 GTTATATGAAATA
43900078 GTTATAT-AAATAA
1 GTTATATGAAAT-A
*
43900091 GATATATGAAAATA
1 GTTATATG-AAATA
*
43900105 GATATATGAAAT
1 GTTATATGAAAT
43900117 GGAACATTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
12 4 0.09
13 22 0.48
14 16 0.35
15 4 0.09
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (13 bp):
GTTATATGAAATA
Found at i:43900082 original size:40 final size:40
Alignment explanation
Indices: 43900037--43900118 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
43900027 TGTTATGTTA
** * * *
43900037 GGTTATACAAATTGGTTATATGGAAATAGTTATATGAAAT
1 GGTTATACAAATAAGATATATGAAAATAGATATATGAAAT
*
43900077 GGTTATATAAATAAGATATATGAAAATAGATATATGAAAT
1 GGTTATACAAATAAGATATATGAAAATAGATATATGAAAT
43900117 GG
1 GG
43900119 AACATTGGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.45, C:0.01, G:0.20, T:0.34
Consensus pattern (40 bp):
GGTTATACAAATAAGATATATGAAAATAGATATATGAAAT
Found at i:43900103 original size:15 final size:14
Alignment explanation
Indices: 43900053--43900115 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
43900043 ACAAATTGGT
* *
43900053 TATATGGAAATAGT
1 TATATGAAAATAGA
* *
43900067 TATATG-AAATGGT
1 TATATGAAAATAGA
43900080 TATAT--AAATAAGA
1 TATATGAAAAT-AGA
43900093 TATATGAAAATAGA
1 TATATGAAAATAGA
43900107 TATATGAAA
1 TATATGAAA
43900116 TGGAACATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
12 4 0.09
13 17 0.40
14 18 0.42
15 4 0.09
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.33
Consensus pattern (14 bp):
TATATGAAAATAGA
Found at i:43900103 original size:27 final size:26
Alignment explanation
Indices: 43900049--43900116 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
43900039 TTATACAAAT
*
43900049 TGGTTATATGGAAATAGTTATATGAAA
1 TGGTTATAT-GAAATAGATATATGAAA
43900076 TGGTTATAT-AAATAAGATATATGAAAA
1 TGGTTATATGAAAT-AGATATATG-AAA
* *
43900103 TAGATATATGAAAT
1 TGGTTATATGAAAT
43900117 GGAACATTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 4 0.11
26 8 0.23
27 19 0.54
28 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (26 bp):
TGGTTATATGAAATAGATATATGAAA
Done.