Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 131 of 295
Found at i:44936839 original size:129 final size:129
Alignment explanation
Indices: 44936597--44936899 Score: 304
Period size: 129 Copynumber: 2.4 Consensus size: 129
44936587 TTTGCTAAAA
* * * * *
44936597 TTAGTGGCGTTTGTATGAAAAGCGCCGCTATAGGTCATGTTCTTTAGCGGCATTTTTGAGAAAAG
1 TTAGCGGCGTTTGTATGAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACATTTGTGAGAAAAG
* *
44936662 CACCGCCAAAGATCACGTTCTTTAGCGGCGTTTGTATGAAAAGAGCCGCCAAAGGTCACGTTCT
66 CACCGCCAAAGATCACGTTCTTTAGCGGAGTTTGTATGAAAAGAGCCGCCAAAGGTCAAGTTCT
* ** * **
44936726 TTAGCGGCGTTTGTTTGGTAAGCACCGCTAAAGGTCATGTTCTTTAGCGACGTTTGT-ACGGGAA
1 TTAGCGGCGTTTGTATGAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACATTTGTGA-GAAAA
* * * * * ** * * *
44936790 GCGCCGCTAAAGGTCATGTTCTTTAGCGGATTTTGTATGGCAAGCGCCGCTAGAGGTCAAGTTCT
65 GCACCGCCAAAGATCACGTTCTTTAGCGGAGTTTGTATGAAAAGAGCCGCCAAAGGTCAAGTTCT
* * * * *** *
44936855 TCAGCGGCGCTT-TCTCAAAAATGCCGCTAAATGTCATGTTCTTTA
1 TTAGCGGCGTTTGTATGAAAAGCACCGCTAAAGGTCATGTTCTTTA
44936900 ACGGTGTTTT
Statistics
Matches: 140, Mismatches: 33, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
128 26 0.19
129 114 0.81
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (129 bp):
TTAGCGGCGTTTGTATGAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACATTTGTGAGAAAAG
CACCGCCAAAGATCACGTTCTTTAGCGGAGTTTGTATGAAAAGAGCCGCCAAAGGTCAAGTTCT
Found at i:44938838 original size:31 final size:31
Alignment explanation
Indices: 44938779--44938848 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
44938769 TTTTAACAAC
* *
44938779 TCAGTGACTTAAATAAAATTTTTTAAATAAT
1 TCAGTGACTTAAATAAAATCTTTCAAATAAT
* *
44938810 TCAGTTACTTAAATGAAAA-CTTTCAAATAGT
1 TCAGTGACTTAAAT-AAAATCTTTCAAATAAT
*
44938841 TCAATGAC
1 TCAGTGAC
44938849 AAATTGTAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (31 bp):
TCAGTGACTTAAATAAAATCTTTCAAATAAT
Found at i:44940047 original size:17 final size:17
Alignment explanation
Indices: 44940023--44940064 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
44940013 CATTTATATT
* *
44940023 TTCTAAAAAATTATAAA
1 TTCTAAAAAAATAAAAA
44940040 TT-TAAAAAAATAAAAA
1 TTCTAAAAAAATAAAAA
44940056 TTCTAAAAA
1 TTCTAAAAA
44940065 CGTTCTAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (17 bp):
TTCTAAAAAAATAAAAA
Found at i:44942886 original size:15 final size:15
Alignment explanation
Indices: 44942868--44942899 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
44942858 GAATGATAAT
44942868 AATAATAATAATATA
1 AATAATAATAATATA
*
44942883 AATAATAATAGTATA
1 AATAATAATAATATA
44942898 AA
1 AA
44942900 ACGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:44943415 original size:48 final size:48
Alignment explanation
Indices: 44943356--44943488 Score: 137
Period size: 49 Copynumber: 2.8 Consensus size: 48
44943346 AATAGTATTG
* *
44943356 AGTATTAAAAGTATATACATAATATAGACAAAAATATATGCATAATGT
1 AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATGT
* * * * *
44943404 AGTATTGAAAGTATTTTCATGGGATA-ATATAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT--AATATAGATAAAAATATATGAATAATGT
*
44943453 -GATATTAAAAATATATACATAA-ATAGGATAAAAATA
1 AG-TATTAAAAGTATATACATAATATA-GATAAAAATA
44943489 AGAAATCAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
46 1 0.01
47 2 0.03
48 27 0.40
49 34 0.51
50 3 0.04
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.32
Consensus pattern (48 bp):
AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATGT
Found at i:44943834 original size:21 final size:22
Alignment explanation
Indices: 44943808--44943849 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
44943798 ATATATAATA
44943808 AAATAACTTAATATA-AATAAG
1 AAATAACTTAATATAGAATAAG
*
44943829 AAATAATTTAATATAGAATAA
1 AAATAACTTAATATAGAATAA
44943850 TAAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
AAATAACTTAATATAGAATAAG
Found at i:44945343 original size:132 final size:132
Alignment explanation
Indices: 44945172--44945626 Score: 687
Period size: 132 Copynumber: 3.4 Consensus size: 132
44945162 ATCGTCTTCT
* * * *
44945172 ACTACAAATTCAGGGAGACAAGATCTGCAATCTTTAGCCTACCCCACTACTGCTTAGGGAGATAG
1 ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAG
* *
44945237 GATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGGCAAGATTCGCCTTCTTCGATCTGCT
66 GATGGTGGCTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCT
44945302 CC
131 CC
* *
44945304 ACTACAACTTCAGGGAGGCAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAAATAG
1 ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAG
* *
44945369 GATGGTGGCTTAAATCTACTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGAGCTGCT
66 GATGGTGGCTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCT
44945434 CC
131 CC
*
44945436 ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCTACTACTGCTTAGGGAGATAG
1 ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAG
* * **
44945501 GATGGTGGCTTAAATCTGCTTCACTGTAACTTTAAGAAGGCAAGATTCGCCGTCTTTAATCTGCT
66 GATGGTGGCTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCT
44945566 CC
131 CC
** * * * * **
44945568 ACTGTAACTTCAGGGAGGTAAGATCTGTAATTTTCAGTCTGTTACC-CTACTGCTTAGGG
1 ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACT-CCACTACTGCTTAGGG
44945627 GTTTAAGGCA
Statistics
Matches: 294, Mismatches: 28, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
132 293 1.00
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (132 bp):
ACTACAACTTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAG
GATGGTGGCTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCT
CC
Found at i:44945470 original size:45 final size:44
Alignment explanation
Indices: 44945252--44945470 Score: 120
Period size: 45 Copynumber: 4.9 Consensus size: 44
44945242 TGGCTTAAAT
* * * ** *
44945252 CTGCTTCACTGCAACTTCAGGAAGGCAAGATTCGCCTTCTTCGAT
1 CTGCTCCACTACAACTTCAGGGAGGCAAGATT-GCAATCTTCGAG
*
44945297 CTGCTCCACTACAACTTCAGGGAGGCAAGATCTACAATCTTC-AG
1 CTGCTCCACTACAACTTCAGGGAGGCAAGAT-TGCAATCTTCGAG
* ** *** * **** ** *
44945341 CCTACTCCACTACTGCTT-AGGGAAATAGGA-TGGTGGCTTAAAT
1 -CTGCTCCACTACAACTTCAGGGAGGCAAGATTGCAATCTTCGAG
* * ** * **
44945384 CTACTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGAG
1 CTGCTCCACTACAACTTCAGGGAGGCAAGATT-GCAATCTTCGAG
44945429 CTGCTCCACTACAACTTCAGGGAGGCAAGATCTGCAATCTTC
1 CTGCTCCACTACAACTTCAGGGAGGCAAGAT-TGCAATCTTC
44945471 AGCCTACTCT
Statistics
Matches: 123, Mismatches: 44, Indels: 14
0.68 0.24 0.08
Matches are distributed among these distances:
42 16 0.13
43 8 0.07
44 10 0.08
45 87 0.71
46 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (44 bp):
CTGCTCCACTACAACTTCAGGGAGGCAAGATTGCAATCTTCGAG
Found at i:44945668 original size:44 final size:43
Alignment explanation
Indices: 44945605--44945850 Score: 194
Period size: 44 Copynumber: 5.7 Consensus size: 43
44945595 TAATTTTCAG
* * **
44945605 TCTGTTACCCTACTGCTTAGGGGTTTAAGGCACATTGTCTTTGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGGC-CATCATCTTTGA
* ** *
44945649 TCTGTTTCCCTAGTGCTTAGGGGGTTAA-G--ATCTATAATTCA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGGCCATC-ATCTTTGA
* * * * **
44945690 GCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCCTTTGA
1 -TCTGTTTCCCTACTGCTTAGGGGGTTAAGG-CCATCATCTTTGA
** * * * *
44945735 TCTGTTTCCCTTTTGCTTA-AGGGTTAAGATCCATCACCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAG-GCCATCATCTTTGA
* * * *
44945778 TCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATCATCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAG-GCCATCATCTTTGA
44945822 TCTGTTTCCCTACTGCTTAGGGGGTTAAG
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAG
44945851 ATCTGTAAAT
Statistics
Matches: 160, Mismatches: 34, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
40 2 0.01
41 4 0.03
42 23 0.14
43 37 0.23
44 88 0.55
45 3 0.02
46 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (43 bp):
TCTGTTTCCCTACTGCTTAGGGGGTTAAGGCCATCATCTTTGA
Found at i:44945851 original size:44 final size:44
Alignment explanation
Indices: 44945647--44945893 Score: 227
Period size: 44 Copynumber: 5.7 Consensus size: 44
44945637 CATTGTCTTT
* *
44945647 GATCTGTTTCCCTAGTGCTTAGGGGGTTAAGATCTAT-A-ATTC
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
* * * * ** * * *
44945689 -AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCCTTT
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
** * *
44945733 GATCTGTTTCCCTTTTGCTTA-AGGGTTAAGATCCATCACCTTC
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
* *
44945776 GATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATCATCTTC
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
* **
44945820 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
* * *
44945863 -AGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAG
44945894 GCTCTTAACC
Statistics
Matches: 165, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 28 0.17
43 65 0.39
44 70 0.42
45 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (44 bp):
GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTC
Found at i:44945870 original size:87 final size:87
Alignment explanation
Indices: 44945579--44946319 Score: 661
Period size: 87 Copynumber: 8.5 Consensus size: 87
44945569 CTGTAACTTC
* * * *
44945579 AGGGAGGTAAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGTTTAAGGCACATT-GT
1 AGGGAGATAAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-ACCTTCGT
* *
44945643 CTTTGATCTGTTTCCCTAGTGCTT
64 CTTCGATCTGTTTCCCTACTGCTT
* * * * * * *
44945667 AGGGGGTTAAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCCT
1 AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGACCTTCGTCT
* **
44945731 TTGATCTGTTTCCCTTTTGCTT
66 TCGATCTGTTTCCCTACTGCTT
* * ** ** * * * * *
44945753 AAGG-GTTAAGATCCATCACCTTC-GATCTGTTTCCCTACTGCTTAGGGGATTAA-GATCTATCA
1 AGGGAGATAAGATCTGT-AAATTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGACCT-TCG
44945815 TCTTCGATCTGTTTCCCTACTGCTT
63 TCTTCGATCTGTTTCCCTACTGCTT
* * ***
44945840 AGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-CTCTTAACC
1 AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGAC-CTTCGTC
* * *
44945904 TTTGATCT-ATTCCACCACTGCTT
65 TTCGATCTGTTTCC-CTACTGCTT
* * * * * *
44945927 AGGGAGACAAGATTTGTAAATTTAGCCTGTTACCCTACTGGTTAAGGGTTTAAGGCCCTTCGTCT
1 AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGACCTTCGTCT
* * *
44945992 TCGATTTG-CTCCACTATTGCTT
66 TCGATCTGTTTCC-CTACTGCTT
* * *
44946014 AGGGAGACAAGAT-TAGTAAATTTAGCCTGTTACCCTACTGCTTAAGGGG-TTAAGGCCCTTCGT
1 AGGGAGATAAGATCT-GTAAATTCAGCCTGTTACCCTACTGCTT-AGGGGTTTAAGGACCTTCGT
* *
44946077 CTTCGATCTG-CTCTACTACTGCTT
64 CTTCGATCTGTTTC-CCTACTGCTT
* * * * *
44946101 AGGGAGACAAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGAGTTTAAGG-TCTGTC-AC
1 AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGACCT-TCGTC
*
44946163 TTTCGATCTGTTTCCCTATTGCTT
65 -TTCGATCTGTTTCCCTACTGCTT
* *
44946187 AGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGAGG-TTAAGGACCTTCGTC
1 AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGG-GGTTTAAGGACCTTCGTC
*
44946251 TTCGATATGTTTCCCTACT-CTT
65 TTCGATCTGTTTCCCTACTGCTT
* * * * *
44946273 AAGGG-GTTAAGATCTTTAAATTTAGCTTGTTACCCTACTTCTTAGGG
1 -AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
44946320 AGATAATTCA
Statistics
Matches: 546, Mismatches: 82, Indels: 53
0.80 0.12 0.08
Matches are distributed among these distances:
85 21 0.04
86 171 0.31
87 316 0.58
88 38 0.07
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (87 bp):
AGGGAGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGACCTTCGTCT
TCGATCTGTTTCCCTACTGCTT
Found at i:44945965 original size:174 final size:174
Alignment explanation
Indices: 44945587--44946319 Score: 668
Period size: 173 Copynumber: 4.2 Consensus size: 174
44945577 TCAGGGAGGT
* * ** *
44945587 AAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGTTTAAGGCA-C-ATTGTCTTTGAT
1 AAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-ATCTATCATCTTCGAT
* * ** *
44945650 CTGTTTCCCTAGTGCTTAGGGGGTTAAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAAGGG
64 CTGTTTCCCTATTGCTTAGGGAGACAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTT-AGGG
* * * ** * **
44945714 TTTAAGGCCCATCGCCTTTGATCTGTTTCC-CTTTTGCTTAAGG-GTT
128 GTTAAGGCCCTTCGCCTTTGATCT-ATTCCACTACTGCTTAGGGAGAC
** * ** * * * *
44945760 AAGATCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGATTAA-GATCTATCATCTTCGATC
1 AAGATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGATCTATCATCTTCGATC
* * **
44945824 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGT
65 TGTTTCCCTATTGCTTAGGGAGACAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG-
* ** *
44945889 TTAAGGCTCTTAACCTTTGATCTATTCCACCACTGCTTAGGGAGAC
129 TTAAGGCCCTTCGCCTTTGATCTATTCCACTACTGCTTAGGGAGAC
* * * ** * *
44945935 AAGATTTGTAAATTTAGCCTGTTACCCTACTGGTTAAGGGTTTAAGGCCCT-TCGTCTTCGATTT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGATCTATCATCTTCGATCT
* *
44945999 G-CTCCACTATTGCTTAGGGAGACAAGAT-TAGTAAATTTAGCCTGTTACCCTACTGCTTAAGGG
66 GTTTCC-CTATTGCTTAGGGAGACAAGATCT-GTAAATTCAGCCTGTTACCCTACTGCTT-AGGG
* * ** *
44946062 GTTAAGGCCCTTCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGAC
128 GTTAAGGCCCTTCGCCTTTGATCTATTCCACTACTGCTTAGGGAGAC
* * * *
44946109 AAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGAGTTTAAGG-TCTGTCA-CTTTCGATC
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGATCTATCATC-TTCGATC
*
44946171 TGTTTCCCTATTGCTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGAGG
65 TGTTTCCCTATTGCTTAGGGAGACAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGG-GG
* * * * * **
44946236 TTAAGGACCTTCGTCTTCGATATGTTTCC-CTACT-CTTAAGGG-GTT
129 TTAAGGCCCTTCGCCTTTGATCT-ATTCCACTACTGCTT-AGGGAGAC
* * *
44946281 AAGATCTTTAAATTTAGCTTGTTACCCTACTTCTTAGGG
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
44946320 AGATAATTCA
Statistics
Matches: 462, Mismatches: 79, Indels: 38
0.80 0.14 0.07
Matches are distributed among these distances:
171 1 0.00
172 21 0.05
173 237 0.51
174 184 0.40
175 19 0.04
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (174 bp):
AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGATCTATCATCTTCGATCT
GTTTCCCTATTGCTTAGGGAGACAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTT
AAGGCCCTTCGCCTTTGATCTATTCCACTACTGCTTAGGGAGAC
Found at i:44946203 original size:44 final size:42
Alignment explanation
Indices: 44946092--44946232 Score: 149
Period size: 44 Copynumber: 3.3 Consensus size: 42
44946082 ATCTGCTCTA
44946092 CTACTGCTTAGGGAGACAAGATCTGTAATTCAACCTGTTACC
1 CTACTGCTTAGGGAGACAAGATCTGTAATTCAACCTGTTACC
** * * * * *
44946134 CTACTGCTTA-GGAGTTTAAGGTCTGTCACTTTCGATCTGTTTCC
1 CTACTGCTTAGGGAG-ACAAGATCTGT-A-ATTCAACCTGTTACC
* * *
44946178 CTATTGCTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACC
1 CTACTGCTTAGGGAGACAAGATCTGT-AATTCAACCTGTTACC
44946221 CTACTGCTTAGG
1 CTACTGCTTAGG
44946233 AGGTTAAGGA
Statistics
Matches: 76, Mismatches: 19, Indels: 7
0.75 0.19 0.07
Matches are distributed among these distances:
41 4 0.05
42 18 0.24
43 21 0.28
44 29 0.38
45 4 0.05
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (42 bp):
CTACTGCTTAGGGAGACAAGATCTGTAATTCAACCTGTTACC
Found at i:44946501 original size:64 final size:64
Alignment explanation
Indices: 44946388--44946515 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
44946378 TTCATGTATC
* * * *
44946388 TATGTTTATGCCAAATAATTAGGATGCTATGATTGAAATGGATCTAATGCTCCTAACTAAATGT
1 TATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGT
* *
44946452 TATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGT
1 TATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGT
44946516 GTAGAAATGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (64 bp):
TATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGT
Found at i:44951010 original size:9 final size:10
Alignment explanation
Indices: 44950997--44951042 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
44950987 AGGAAAGTCT
44950997 AATGCAAAT-
1 AATGCAAATG
44951006 AATGC-AATG
1 AATGCAAATG
44951015 CAATGCAAATG
1 -AATGCAAATG
*
44951026 CATG-AAATG
1 AATGCAAATG
44951035 AATGCAAA
1 AATGCAAA
44951043 AGAAAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:44951021 original size:19 final size:19
Alignment explanation
Indices: 44950997--44951042 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
44950987 AGGAAAGTCT
*
44950997 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
44951015 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
44951035 AATGCAAA
1 AATGCAAA
44951043 AGAAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:44953434 original size:26 final size:26
Alignment explanation
Indices: 44953384--44953435 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
44953374 TATATGTATT
*
44953384 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* *
44953410 AAAATATATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
44953436 TATACATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:44953713 original size:49 final size:49
Alignment explanation
Indices: 44953659--44953792 Score: 132
Period size: 49 Copynumber: 2.8 Consensus size: 49
44953649 AATAGTATTG
*
44953659 AGTATTAAAAGTATATACATAATATAGACA-AAAAATATATGCATAATGT
1 AGTATTAAAAGTATATACATAA-ATAGACATAAAAATATATGAATAATGT
* * * ** *
44953708 AGTATTGAAAGTATTTTCATGGGATA-ATATAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT-AAATAGACATAAAAATATATGAATAATGT
* *
44953757 -GATATTAAAAATATATACATAAATAG-GATAAAAATA
1 AG-TATTAAAAGTATATACATAAATAGACATAAAAATA
44953793 AGAAATCAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
48 15 0.22
49 52 0.78
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.32
Consensus pattern (49 bp):
AGTATTAAAAGTATATACATAAATAGACATAAAAATATATGAATAATGT
Found at i:44954137 original size:21 final size:22
Alignment explanation
Indices: 44954111--44954152 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
44954101 ATATATAATA
44954111 AAATAACTTAATATA-AATAAG
1 AAATAACTTAATATAGAATAAG
*
44954132 AAATAATTTAATATAGAATAA
1 AAATAACTTAATATAGAATAA
44954153 TAAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
AAATAACTTAATATAGAATAAG
Found at i:44955476 original size:22 final size:21
Alignment explanation
Indices: 44955451--44955491 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
44955441 TACATTTTAA
*
44955451 TAATAATATTATTAAATATATT
1 TAATAACATTATT-AATATATT
*
44955473 TAATAACATTCTTAATATA
1 TAATAACATTATTAATATA
44955492 ATTATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATAACATTATTAATATATT
Found at i:44956313 original size:16 final size:15
Alignment explanation
Indices: 44956292--44956332 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
44956282 ATTAGGGTTA
44956292 AGGTTTTGAAAATTTT
1 AGGTTTT-AAAATTTT
*
44956308 AGGTTTTTAAATTTT
1 AGGTTTTAAAATTTT
44956323 AGGGTTTTAA
1 A-GGTTTTAA
44956333 GGAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (15 bp):
AGGTTTTAAAATTTT
Found at i:44956321 original size:15 final size:15
Alignment explanation
Indices: 44956301--44956332 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
44956291 AAGGTTTTGA
*
44956301 AAATTTTAGGTTTTT
1 AAATTTTAGGGTTTT
44956316 AAATTTTAGGGTTTT
1 AAATTTTAGGGTTTT
44956331 AA
1 AA
44956333 GGAAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (15 bp):
AAATTTTAGGGTTTT
Found at i:44956444 original size:96 final size:99
Alignment explanation
Indices: 44956327--44956503 Score: 256
Period size: 96 Copynumber: 1.8 Consensus size: 99
44956317 AATTTTAGGG
* * *
44956327 TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTT-TGTTAATTAAATTAATTACT-AATT
1 TTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTAT-TTAAGTAAATTAATTA-TAAATT
44956390 T-T-AAAAAATTAGATTATGGTTTAGTGTTTATGGT
64 TATAAAAAAATTAGATTATGGTTTAGTGTTTATGGT
* *
44956424 TTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTATTTGAGTAAATTAATTATAAATTTA
1 TTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTATTTAAGTAAATTAATTATAAATTTA
44956488 TAAAAAAATTAGATTA
66 TAAAAAAATTAGATTA
44956504 GGATTTTAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
95 1 0.01
96 46 0.65
97 10 0.14
98 14 0.20
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.41
Consensus pattern (99 bp):
TTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTATTTAAGTAAATTAATTATAAATTTA
TAAAAAAATTAGATTATGGTTTAGTGTTTATGGT
Found at i:44957151 original size:126 final size:126
Alignment explanation
Indices: 44956613--44957151 Score: 834
Period size: 126 Copynumber: 4.3 Consensus size: 126
44956603 AAAAGCTTCT
*
44956613 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
44956678 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTGCTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
44956739 ACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
44956804 ATAGTGTAAAAAATGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
44956865 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
44956930 ATAGTGGT-AAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAA-AAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACT-GAAAGAAGCTCCC
* * * **
44956991 ACGTGGATGCTCTTTTGCTACAGTGGTCTT-TAAAAAAATAATTTTGAGAAGACGTGTCTGCATA
1 ACGTGGACGCTCTTTTGCTACAGTAGT-TTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCA
* *
44957055 AATAATGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
65 AATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
44957117 ACGTGGACGCTCTTTTGCTACAGTGGTTTCT-AAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAA
44957152 TAACTTGGGC
Statistics
Matches: 382, Mismatches: 25, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
125 12 0.03
126 363 0.95
127 7 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:44960330 original size:116 final size:116
Alignment explanation
Indices: 44960154--44960768 Score: 1088
Period size: 116 Copynumber: 5.3 Consensus size: 116
44960144 TTTATATTTT
* * **
44960154 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
44960219 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
44960270 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
44960335 AAAATATAAAAGTAAATTACAGTTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
44960386 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
44960451 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
44960502 ATTACATGAAATAATATAAAAATATTCAAAATTTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
44960567 AAAATAT-AAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
44960617 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATT-
*
44960682 AAAAATATAAAAGTGAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
44960734 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
44960769 TGTACAAATA
Statistics
Matches: 480, Mismatches: 17, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
115 105 0.22
116 300 0.62
117 75 0.16
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:44961804 original size:7 final size:7
Alignment explanation
Indices: 44961794--44961820 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
44961784 GTTAAATAAA
44961794 AAATACT
1 AAATACT
44961801 AAATACT
1 AAATACT
44961808 AAATACT
1 AAATACT
44961815 AAATAC
1 AAATAC
44961821 GAATCCACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:44961805 original size:14 final size:14
Alignment explanation
Indices: 44961786--44961819 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
44961776 AAATATTAGT
44961786 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
44961800 TAAATACTAAATAC
1 TAAATAAAAAATAC
44961814 TAAATA
1 TAAATA
44961820 CGAATCCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:44962993 original size:22 final size:22
Alignment explanation
Indices: 44962981--44963030 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
44962971 TAACGAGAGT
44962981 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
* *
44963003 TTTGAGA-G-ATTTGAGAGGAA
1 TTTGAGAGGAATTTAAGAGAAA
44963023 TTTGAGAG
1 TTTGAGAG
44963031 AATATTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:44963038 original size:11 final size:10
Alignment explanation
Indices: 44962981--44963038 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
44962971 TAACGAGAGT
44962981 TTTGAGAGGAA
1 TTTGAGA-GAA
*
44962992 TTTAAGAGAAA
1 TTTGAGAG-AA
44963003 TTTGAGAG-A
1 TTTGAGAGAA
44963012 TTTGAGAGGAA
1 TTTGAGA-GAA
44963023 TTTGAGAGAA
1 TTTGAGAGAA
44963033 TATTGA
1 T-TTGA
44963039 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 8 0.20
10 6 0.15
11 27 0.66
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:44963044 original size:31 final size:31
Alignment explanation
Indices: 44962981--44963044 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
44962971 TAACGAGAGT
*
44962981 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
*
44963012 TTTGAGAGGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-TTGAAAGA
44963043 TT
1 TT
44963045 GAAGATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
Found at i:44971311 original size:12 final size:12
Alignment explanation
Indices: 44971286--44971339 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
44971276 AGAAAATGAT
* *
44971286 AAATAAAGACAA
1 AAATAAAAAGAA
44971298 AAATAAAAAG-A
1 AAATAAAAAGAA
44971309 AAATAAAAAGAA
1 AAATAAAAAGAA
* **
44971321 AAACAAATCGAA
1 AAATAAAAAGAA
44971333 AAATAAA
1 AAATAAA
44971340 TAGACTCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 11 0.31
12 24 0.69
ACGTcount: A:0.78, C:0.06, G:0.07, T:0.09
Consensus pattern (12 bp):
AAATAAAAAGAA
Found at i:44971313 original size:11 final size:11
Alignment explanation
Indices: 44971297--44971322 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44971287 AATAAAGACA
44971297 AAAATAAAAAG
1 AAAATAAAAAG
44971308 AAAATAAAAAG
1 AAAATAAAAAG
44971319 AAAA
1 AAAA
44971323 ACAAATCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAATAAAAAG
Found at i:44978276 original size:39 final size:39
Alignment explanation
Indices: 44978222--44978299 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
44978212 GTTTCCGCTA
44978222 CTAAAATAAACTTTGTCATCATCTCCTCAAGGTTCGACT
1 CTAAAATAAACTTTGTCATCATCTCCTCAAGGTTCGACT
44978261 CTAAAATAAACTTTGTCATCATCTCCTCAAGGTTCGACT
1 CTAAAATAAACTTTGTCATCATCTCCTCAAGGTTCGACT
44978300 TTTTCTCTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (39 bp):
CTAAAATAAACTTTGTCATCATCTCCTCAAGGTTCGACT
Found at i:44983348 original size:243 final size:243
Alignment explanation
Indices: 44982920--44983407 Score: 967
Period size: 243 Copynumber: 2.0 Consensus size: 243
44982910 GGAGAATTAA
44982920 TTAAAATTCATAAAATAAATATTAAAGAGTCTTGAGGAGATTTTACAGAATATTGGGAGGCTTAA
1 TTAAAATTCATAAAATAAATATTAAAGAGTCTTGAGGAGATTTTACAGAATATTGGGAGGCTTAA
44982985 TTAAAACTTAAAGGGCTTAATGGTAATTCCCAAAAGTTTTGGGAGGCTAAGTCACCTCTTTGGTT
66 TTAAAACTTAAAGGGCTTAATGGTAATTCCCAAAAGTTTTGGGAGGCTAAGTCACCTCTTTGGTT
44983050 TCCCTGAAGATCCTCCTTATACAATCTTTGGTCAACGATAATGAATACTATCGAAGTTGGCATAG
131 TCCCTGAAGATCCTCCTTATACAATCTTTGGTCAACGATAATGAATACTATCGAAGTTGGCATAG
44983115 ATTATGTGATGTGTTTTCATTGGCCACTACTTTTTCAACATCAATAGC
196 ATTATGTGATGTGTTTTCATTGGCCACTACTTTTTCAACATCAATAGC
44983163 TTAAAATTCATAAAATAAATATTAAAGAGTCTTGAGGAGATTTTACAGAATATTGGGAGGCTTAA
1 TTAAAATTCATAAAATAAATATTAAAGAGTCTTGAGGAGATTTTACAGAATATTGGGAGGCTTAA
44983228 TTAAAACTTAAAGGGCTTAATGGTAATTCCCAAAAGTTTTGGGAGGCTAAGTCACCTCTTTGGTT
66 TTAAAACTTAAAGGGCTTAATGGTAATTCCCAAAAGTTTTGGGAGGCTAAGTCACCTCTTTGGTT
*
44983293 TCCCTGAGGATCCTCCTTATACAATCTTTGGTCAACGATAATGAATACTATCGAAGTTGGCATAG
131 TCCCTGAAGATCCTCCTTATACAATCTTTGGTCAACGATAATGAATACTATCGAAGTTGGCATAG
44983358 ATTATGTGATGTGTTTTCATTGGCCACTACTTTTTCAACATCAATAGC
196 ATTATGTGATGTGTTTTCATTGGCCACTACTTTTTCAACATCAATAGC
44983406 TT
1 TT
44983408 CAGGGGTAAA
Statistics
Matches: 244, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
243 244 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (243 bp):
TTAAAATTCATAAAATAAATATTAAAGAGTCTTGAGGAGATTTTACAGAATATTGGGAGGCTTAA
TTAAAACTTAAAGGGCTTAATGGTAATTCCCAAAAGTTTTGGGAGGCTAAGTCACCTCTTTGGTT
TCCCTGAAGATCCTCCTTATACAATCTTTGGTCAACGATAATGAATACTATCGAAGTTGGCATAG
ATTATGTGATGTGTTTTCATTGGCCACTACTTTTTCAACATCAATAGC
Found at i:44984353 original size:30 final size:30
Alignment explanation
Indices: 44984296--44984353 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
44984286 CTAAAGATAA
*
44984296 TGATGGGGCAGATGAGATTGAGTTTATGGC
1 TGATGGGGCAGATGAGATTGAGCTTATGGC
*
44984326 TGATGGGGCAGAT-AGGATTGGGCTTATG
1 TGATGGGGCAGATGA-GATTGAGCTTATG
44984354 ACCGATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.22, C:0.07, G:0.41, T:0.29
Consensus pattern (30 bp):
TGATGGGGCAGATGAGATTGAGCTTATGGC
Found at i:44988141 original size:15 final size:15
Alignment explanation
Indices: 44988121--44988149 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
44988111 CAAAAAAAAA
44988121 AAAAATAATAATAAT
1 AAAAATAATAATAAT
44988136 AAAAATAATAATAA
1 AAAAATAATAATAA
44988150 GTTGAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATAATAATAAT
Found at i:44990802 original size:23 final size:23
Alignment explanation
Indices: 44990774--44990818 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
44990764 AAAATTATAA
44990774 TATAAATAATATTT-TTAAAATTT
1 TATAAATAAT-TTTCTTAAAATTT
*
44990797 TATAAATAGTTTTCTTAAAATT
1 TATAAATAATTTTCTTAAAATT
44990819 AAATTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
TATAAATAATTTTCTTAAAATTT
Found at i:44992143 original size:24 final size:24
Alignment explanation
Indices: 44992091--44992143 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
44992081 AACAAGCTCA
* *
44992091 TTTAAAAGCTTATTTATTGGCTCG
1 TTTATAAGCTTATTTATTGACTCG
* *
44992115 TTTATAAGCTTGTTTATTGACTTG
1 TTTATAAGCTTATTTATTGACTCG
44992139 TTTAT
1 TTTAT
44992144 GACTCATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.23, C:0.09, G:0.15, T:0.53
Consensus pattern (24 bp):
TTTATAAGCTTATTTATTGACTCG
Found at i:44995759 original size:18 final size:18
Alignment explanation
Indices: 44995719--44995760 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
44995709 GTGGTAATTT
*
44995719 TTGGGCTTGATAGGCCAC
1 TTGGGCGTGATAGGCCAC
*
44995737 ATGGGCGTG-TAGGCCTAC
1 TTGGGCGTGATAGGCC-AC
44995755 TTGGGC
1 TTGGGC
44995761 CTATTTACTC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.14, C:0.21, G:0.38, T:0.26
Consensus pattern (18 bp):
TTGGGCGTGATAGGCCAC
Found at i:44996132 original size:20 final size:20
Alignment explanation
Indices: 44996107--44996203 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
44996097 AACTGTGGAC
*
44996107 CTACTGATGGCTTTATGCCG
1 CTACTGATGGCTTTGTGCCG
* * *
44996127 CTACTGATGTCTTTGGGCCA
1 CTACTGATGGCTTTGTGCCG
* * **
44996147 CTATTAATGGCTTTGTGTAG
1 CTACTGATGGCTTTGTGCCG
* * *
44996167 CTACTGACGACTTCGTGCCG
1 CTACTGATGGCTTTGTGCCG
*
44996187 CTACTCATGGCTTTGTG
1 CTACTGATGGCTTTGTG
44996204 TCATATACTG
Statistics
Matches: 55, Mismatches: 22, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.36
Consensus pattern (20 bp):
CTACTGATGGCTTTGTGCCG
Found at i:44996275 original size:26 final size:26
Alignment explanation
Indices: 44996213--44996296 Score: 100
Period size: 26 Copynumber: 3.2 Consensus size: 26
44996203 GTCATATACT
*
44996213 GATATTATTACTGGCAGCTCTGCTGC
1 GATATTATTACTGGCAGCTTTGCTGC
* * *
44996239 -ATTACTGTTACTGGCAGCTTTGTTGC
1 GA-TATTATTACTGGCAGCTTTGCTGC
44996265 GATATTATTACTGGCA-CATTTGCTGC
1 GATATTATTACTGGCAGC-TTTGCTGC
44996291 GATATT
1 GATATT
44996297 GGTGCGTTGG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
25 2 0.04
26 45 0.94
27 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (26 bp):
GATATTATTACTGGCAGCTTTGCTGC
Found at i:45004693 original size:17 final size:18
Alignment explanation
Indices: 45004659--45004694 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
45004649 TACAAAAAAA
*
45004659 TTCATTTTATGCAATTTT
1 TTCATTTTATGAAATTTT
45004677 TTCATTTT-TGAAATTTT
1 TTCATTTTATGAAATTTT
45004694 T
1 T
45004695 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64
Consensus pattern (18 bp):
TTCATTTTATGAAATTTT
Found at i:45011700 original size:50 final size:50
Alignment explanation
Indices: 45011645--45011745 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
45011635 ATGCCCGACC
*
45011645 ACCAATACAACCTCTTCAAATCATGACACATTTTCGTACTGCCCAGATGA
1 ACCAATACAACCTCTTCAAATCATGACACATTTTCATACTGCCCAGATGA
*
45011695 ACCAATACAACCTCTTCAAATCATGACACATTTTCATACTGCCCGGATGA
1 ACCAATACAACCTCTTCAAATCATGACACATTTTCATACTGCCCAGATGA
45011745 A
1 A
45011746 TAGACAAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.26
Consensus pattern (50 bp):
ACCAATACAACCTCTTCAAATCATGACACATTTTCATACTGCCCAGATGA
Found at i:45018471 original size:16 final size:17
Alignment explanation
Indices: 45018452--45018493 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
45018442 TTATTTAATC
45018452 AATTAATTAATTTT-TT
1 AATTAATTAATTTTCTT
*
45018468 AATTAAATAATTTTCTT
1 AATTAATTAATTTTCTT
45018485 AATCTAATT
1 AAT-TAATT
45018494 TTAGTTCCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 13 0.59
17 5 0.23
18 4 0.18
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTAATTAATTTTCTT
Found at i:45019339 original size:9 final size:10
Alignment explanation
Indices: 45019312--45019336 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45019302 TTTAATTGGA
45019312 AATTTTAATT
1 AATTTTAATT
45019322 AATTTTAATT
1 AATTTTAATT
45019332 AATTT
1 AATTT
45019337 AATAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:45037191 original size:25 final size:25
Alignment explanation
Indices: 45037157--45037211 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
45037147 TAAATTTATT
*
45037157 TTTATTATTAATAAAATTT-ACTTAA
1 TTTATAATT-ATAAAATTTGACTTAA
*
45037182 TTTATAATTATAAACTTTGACTTAA
1 TTTATAATTATAAAATTTGACTTAA
*
45037207 ATTAT
1 TTTAT
45037212 TTGAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTATAATTATAAAATTTGACTTAA
Found at i:45044804 original size:11 final size:11
Alignment explanation
Indices: 45044729--45044805 Score: 50
Period size: 11 Copynumber: 6.8 Consensus size: 11
45044719 TATATTTTTC
45044729 AAAAAATTATAA
1 AAAAAATT-TAA
** *
45044741 AAAACGTTTTA
1 AAAAAATTTAA
45044752 AAAAAATTCT--
1 AAAAAATT-TAA
* * *
45044762 AAAGAATATAT
1 AAAAAATTTAA
45044773 AAAAAATTTAA
1 AAAAAATTTAA
45044784 AATTAAAATTTAA
1 AA--AAAATTTAA
45044797 AAAAAATTT
1 AAAAAATTT
45044806 GGAACCTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 11
0.70 0.14 0.15
Matches are distributed among these distances:
9 1 0.02
10 6 0.12
11 25 0.50
12 7 0.14
13 11 0.22
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (11 bp):
AAAAAATTTAA
Found at i:45048942 original size:25 final size:26
Alignment explanation
Indices: 45048914--45048962 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
45048904 AAAGATTGTT
*
45048914 AAAACTCTTCTAAA-AAAACTCAAGA
1 AAAACTCTTCAAAAGAAAACTCAAGA
* *
45048939 AAAATTCTTGAAAAGAAAACTCAA
1 AAAACTCTTCAAAAGAAAACTCAA
45048963 AAGAGAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.57, C:0.16, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAACTCTTCAAAAGAAAACTCAAGA
Found at i:45055191 original size:16 final size:17
Alignment explanation
Indices: 45055170--45055211 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
45055160 ACATAATATT
45055170 TATTTTTATTTTTT-TG
1 TATTTTTATTTTTTATG
*
45055186 TATTTTCTTTTTTTTATG
1 TATTTT-TATTTTTTATG
45055204 TACTTTTT
1 TA-TTTTT
45055212 TATCACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 5 0.23
19 4 0.18
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TATTTTTATTTTTTATG
Found at i:45065051 original size:49 final size:49
Alignment explanation
Indices: 45064979--45065076 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
45064969 AAGATTATGC
*
45064979 TTGTAGGATATAAAATAGGAAATATTTACATGGTGCGTTTAGATGACAT
1 TTGTAGGATATAAAATAGGAAATATTTACATGGTGCATTTAGATGACAT
45065028 TTGTAGGATATAAAATAGGAAATATTTACATGGTGCATTTAGATGACAT
1 TTGTAGGATATAAAATAGGAAATATTTACATGGTGCATTTAGATGACAT
45065077 GCATAAATCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (49 bp):
TTGTAGGATATAAAATAGGAAATATTTACATGGTGCATTTAGATGACAT
Found at i:45067393 original size:31 final size:31
Alignment explanation
Indices: 45067355--45067418 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
45067345 TCATGGTTTT
45067355 CAAAGAAATAGAATAGTGTAACATTGTCCAC
1 CAAAGAAATAGAATAGTGTAACATTGTCCAC
**
45067386 CAAAGAAATAGAATAGTGTTGCATTGTCCAC
1 CAAAGAAATAGAATAGTGTAACATTGTCCAC
45067417 CA
1 CA
45067419 TTGAAGCGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (31 bp):
CAAAGAAATAGAATAGTGTAACATTGTCCAC
Found at i:45079185 original size:89 final size:89
Alignment explanation
Indices: 45079029--45079209 Score: 335
Period size: 89 Copynumber: 2.0 Consensus size: 89
45079019 ATGAATATGT
* *
45079029 TATGTATATGAATGATGTGTATTGATCGGTAATGCCTCGTAACCCTATTCTGACGACAGATACGG
1 TATGTATATGAATGATGTGTATTGATCAGTAATGCCTCGTAACCCTATTCTGACGACAAATACGG
45079094 GTTAGGGGTGTTTCATTTAATTGG
66 GTTAGGGGTGTTTCATTTAATTGG
*
45079118 TATGTATATGAATGATGTGTATTGATCAGTAATGCCTCGTAACCCTATTCTGACGACAAATATGG
1 TATGTATATGAATGATGTGTATTGATCAGTAATGCCTCGTAACCCTATTCTGACGACAAATACGG
45079183 GTTAGGGGTGTTTCATTTAATTGG
66 GTTAGGGGTGTTTCATTTAATTGG
45079207 TAT
1 TAT
45079210 TAGAGCTACG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (89 bp):
TATGTATATGAATGATGTGTATTGATCAGTAATGCCTCGTAACCCTATTCTGACGACAAATACGG
GTTAGGGGTGTTTCATTTAATTGG
Found at i:45080020 original size:13 final size:15
Alignment explanation
Indices: 45079991--45080022 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
45079981 GAGAAAGGCT
45079991 GATTCAGAGGTAAGA
1 GATTCAGAGGTAAGA
45080006 GATTC-GAGG-AAGA
1 GATTCAGAGGTAAGA
45080019 GATT
1 GATT
45080023 GATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.22
Consensus pattern (15 bp):
GATTCAGAGGTAAGA
Found at i:45082942 original size:12 final size:13
Alignment explanation
Indices: 45082925--45082954 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
45082915 TACAAAACTA
45082925 CATTTTAGTACC-
1 CATTTTAGTACCG
45082937 CATTTTAGTACCG
1 CATTTTAGTACCG
45082950 CATTT
1 CATTT
45082955 CACTCGCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.43
Consensus pattern (13 bp):
CATTTTAGTACCG
Found at i:45086128 original size:44 final size:43
Alignment explanation
Indices: 45085997--45086140 Score: 159
Period size: 42 Copynumber: 3.3 Consensus size: 43
45085987 CCAACGTCCT
* * * *
45085997 AGACGTGGTCTTACATGT-AATCAAATATTGATGCCACTATCCC
1 AGACATGGTCTTACATGTAAATCTAA-ATCGATGCCAATATCCC
* * * *
45086040 AGACAGGGTCTTACACG-AAAT-TAAATACGATGCTAATGTCCC
1 AGACATGGTCTTACATGTAAATCTAAAT-CGATGCCAATATCCC
45086082 AGACATGGTCTTACATGTAAATCTCAAATCGATGCCAATATCCC
1 AGACATGGTCTTACATGTAAATCT-AAATCGATGCCAATATCCC
*
45086126 AGACGTGGTCTTACA
1 AGACATGGTCTTACA
45086141 CAAAATTATA
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 28 0.34
43 21 0.25
44 28 0.34
45 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACATGTAAATCTAAATCGATGCCAATATCCC
Found at i:45086147 original size:86 final size:86
Alignment explanation
Indices: 45085992--45086183 Score: 230
Period size: 86 Copynumber: 2.2 Consensus size: 86
45085982 CAATGCCAAC
* * * *
45085992 GTCCTAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTATCCCAGACAGGGTCTTACACG
1 GTCCTAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAGGGTCTTACACA
45086057 AAATTA-A-ATACGATGCTAAT
66 AAATTATATATA-GATGCTAAT
* *
45086077 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGATGCCAATATCCCAGAC-GTGGTCTTAC
1 GTCCTAGACATGGTCTTACATGT-AATC-AAATATCGATGCCAATATCCCAGACAG-GGTCTTAC
* *
45086140 ACAAAATTATATATAGCTGCTACT
63 ACAAAATTATATATAGATGCTAAT
* *
45086164 GTCCTAGAAAGGGTCTTACA
1 GTCCTAGACATGGTCTTACA
45086184 CGATATCTCA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
85 22 0.24
86 39 0.43
87 27 0.30
88 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (86 bp):
GTCCTAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAGGGTCTTACACA
AAATTATATATAGATGCTAAT
Found at i:45090930 original size:58 final size:56
Alignment explanation
Indices: 45090787--45090932 Score: 161
Period size: 57 Copynumber: 2.6 Consensus size: 56
45090777 CCTCATAACA
* ** *
45090787 TATAATAGGATTACCAGTCCAGGATAAATCCTTTTTGTAATATATGCTCAGAAGAG
1 TATAATAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAG
* * * *
45090843 -ATCAATTAGGATTACCAG-CTCAAGCTAAATCCTAATTGTAACATATGTTCGAGAGGGG
1 TAT-AA-TAGGATTACCAGTC-CAGGCTAAATCCTAATTGTAACATATGCTC-AGAAGAG
45090901 TTATAATAGGATTACCAGTCCAGGCTAAATCC
1 -TATAATAGGATTACCAGTCCAGGCTAAATCC
45090933 CATCAGCAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
55 2 0.03
56 3 0.04
57 36 0.49
58 28 0.38
59 3 0.04
60 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (56 bp):
TATAATAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAG
Found at i:45092632 original size:21 final size:22
Alignment explanation
Indices: 45092580--45092632 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
45092570 AAATAAATTC
*
45092580 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
45092601 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
45092623 CATGTATCAT
1 CATGTATCAT
45092633 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:45093728 original size:20 final size:20
Alignment explanation
Indices: 45093687--45093731 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
45093677 AGCACATGTA
*
45093687 TTCATAAAATTTTAGAACTT
1 TTCATAAAATTTTAGAAATT
*
45093707 TTCATCAAATTTT-GCAAATT
1 TTCATAAAATTTTAG-AAATT
45093727 TTCAT
1 TTCAT
45093732 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTAGAAATT
Found at i:45108261 original size:57 final size:58
Alignment explanation
Indices: 45108171--45108311 Score: 169
Period size: 57 Copynumber: 2.4 Consensus size: 58
45108161 TAACATATAA
* * ** *
45108171 TAGGATTACTAGTGCAGGCTAAATCCTTTTTGTAATATCTGCTC-AGAAGAGATCA-AT
1 TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATGCTCGAG-AGAGATCATAT
* *
45108228 TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATGCTCGAGAGGGATTATAT
1 TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATGCTCGAGAGAGATCATAT
* * *
45108286 CAGGATTACCGGTCTAGGCTAAATCC
1 TAGGATTACCAGTCCAGGCTAAATCC
45108312 CATCAGCAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
57 45 0.62
58 27 0.38
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (58 bp):
TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATGCTCGAGAGAGATCATAT
Found at i:45116165 original size:27 final size:27
Alignment explanation
Indices: 45116135--45116332 Score: 218
Period size: 27 Copynumber: 7.3 Consensus size: 27
45116125 TATTGAAATG
** *
45116135 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * * *
45116162 CCCTGGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
45116189 CCTTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
45116216 CCCTCGATTTATAGAATTACCATTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
***
45116243 CCCTCGATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
45116270 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
45116297 CCCT-TAGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
45116324 CCCTCGATT
1 CCCTCGATT
45116333 ATGAAATTAC
Statistics
Matches: 141, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:45116207 original size:54 final size:54
Alignment explanation
Indices: 45116149--45116332 Score: 244
Period size: 54 Copynumber: 3.4 Consensus size: 54
45116139 CGATTTGTAG
* *
45116149 AATTACCATTTTACCCTGGATTTATAGAATTACCGTTTCACCTTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCTTCGATTTACAA
* *
45116203 AATTACTATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCTTCGATTTACAA
*** * * * *
45116257 AATTATTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTTAG-TTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCA-CCTTCGATTTACAA
*
45116311 AATTACCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
45116333 ATGAAATTAC
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
54 112 0.97
55 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCTTCGATTTACAA
Found at i:45116252 original size:81 final size:81
Alignment explanation
Indices: 45116135--45116332 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 81
45116125 TATTGAAATG
* * * * *
45116135 CCCTCGATTTGTAGAATTACCATTTTACCCTGGATTTATAGAATTACCGTTTCACCTTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATTTA
*
45116200 CAAAATTACTATTTTA
66 CAAAATTACCATTTTA
* ** *
45116216 CCCTCGATTTATAGAATTACCATTTCACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATTTA
45116281 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * *
45116297 CCCT-TAGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
45116333 ATGAAATTAC
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 100 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:45116502 original size:54 final size:55
Alignment explanation
Indices: 45116364--45116515 Score: 193
Period size: 54 Copynumber: 2.8 Consensus size: 55
45116354 TGTAGGATAG
* *
45116364 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTA-TAGAAATACCCTCTAATTTGTAA
* * * *
45116418 AATTACCGAAATACCACTAGTTTGTGAAATTATTGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATAGAAATACCCTCTAATTTGTAA
* **
45116472 AATTACCAAAATACCCCTAATTTACAAAATTATAGAAATACCCT
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATAGAAATACCCT
45116516 TGACTTTCTA
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 82 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (55 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTATAGAAATACCCTCTAATTTGTAA
Found at i:45116503 original size:27 final size:27
Alignment explanation
Indices: 45116364--45116490 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
45116354 TGTAGGATAG
45116364 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
45116391 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
45116418 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*** *
45116445 AATTATTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
45116472 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
45116491 ATTTACAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.03
27 80 0.92
28 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:45116510 original size:27 final size:27
Alignment explanation
Indices: 45116336--45116542 Score: 154
Period size: 27 Copynumber: 7.6 Consensus size: 27
45116326 CTCGATTATG
* **
45116336 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACAGAAATACCCCTAGTTTG-TA
*
45116363 GAATTACCA-AAATACCCCTAGTTTGTA
1 AAATTA-CAGAAATACCCCTAGTTTGTA
45116390 AAATTACCA-AAATACCCCTAGTTTGTA
1 AAATTA-CAGAAATACCCCTAGTTTGTA
* * *
45116417 AAATTACCGAAATACCACTAGTTTGTG
1 AAATTACAGAAATACCCCTAGTTTGTA
** *
45116444 AAATTATTGAAATA-CCCTCAATTTGTA
1 AAATTACAGAAATACCCCT-AGTTTGTA
* **
45116471 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-CAGAAATACCCCTAGTTTGTA
* * * *
45116498 AAATTATAGAAATACCCTTGACTTTCTAA
1 AAATTACAGAAATACCCCT-AGTTTGT-A
*
45116527 AAATTATAGAAATACC
1 AAATTACAGAAATACC
45116543 ATTGGTTTAC
Statistics
Matches: 149, Mismatches: 22, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
26 5 0.03
27 115 0.77
28 12 0.08
29 17 0.11
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACAGAAATACCCCTAGTTTGTA
Found at i:45117543 original size:25 final size:24
Alignment explanation
Indices: 45117505--45117574 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
45117495 AGGAAGTGCT
*
45117505 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
45117529 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
45117554 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
45117575 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:45117587 original size:24 final size:24
Alignment explanation
Indices: 45117504--45117587 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
45117494 GAGGAAGTGC
* *
45117504 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
45117529 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
45117553 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
45117577 TAAAAGAGGCT
1 TAAAAG-GGCT
45117588 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:45117769 original size:42 final size:42
Alignment explanation
Indices: 45117722--45117813 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
45117712 TAGTCTCCCC
* *
45117722 AAATGGGCTTACATGCATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
*
45117764 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
45117806 AAATGGGC
1 AAATGGGC
45117814 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
Found at i:45117872 original size:31 final size:31
Alignment explanation
Indices: 45117837--45117951 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
45117827 CATTTACAGT
*
45117837 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
45117868 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
45117899 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
45117930 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
45117952 TCAAGACTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:45129618 original size:76 final size:76
Alignment explanation
Indices: 45129523--45129672 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 76
45129513 ATAAGGAATA
*
45129523 GGCTTTTCCAGGTCCTAATT-GAAGTGCAGGGATGGGTAGGTCGATTATATCCCCACATGAGGTG
1 GGCTTTTCCACGTCCTAATTGGAA-TGCAGGGATGGGTAGGTCGATTATATCCCCACATGAGGTG
45129587 TAAGGTTGGATT
65 TAAGGTTGGATT
* *
45129599 GGCTTTTCGACGTCCTAATTGGAATGCAGGGATGGGTGGGTCGATTATATCCCCACATGAGGTGT
1 GGCTTTTCCACGTCCTAATTGGAATGCAGGGATGGGTAGGTCGATTATATCCCCACATGAGGTGT
45129664 AAGGTTGGA
66 AAGGTTGGA
45129673 CGGAGATGGT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
76 67 0.96
77 3 0.04
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (76 bp):
GGCTTTTCCACGTCCTAATTGGAATGCAGGGATGGGTAGGTCGATTATATCCCCACATGAGGTGT
AAGGTTGGATT
Found at i:45134242 original size:26 final size:27
Alignment explanation
Indices: 45134195--45134246 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
45134185 ATTTATTGTG
*
45134195 GTACAATTTTGAGTTGTGTTTATATTC
1 GTACAATTTTGAATTGTGTTTATATTC
45134222 GTACAA-TTTGAATTG-GTTTTATATT
1 GTACAATTTTGAATTGTG-TTTATATT
45134247 GAACTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 16 0.70
27 6 0.26
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (27 bp):
GTACAATTTTGAATTGTGTTTATATTC
Found at i:45139023 original size:20 final size:20
Alignment explanation
Indices: 45138998--45139050 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
45138988 TTTTGTCAAG
45138998 TATCGATAAATTTAAATAAA-
1 TATCGATAAATTTAAA-AAAT
*
45139018 TATCGATAAATTCAAAAAAT
1 TATCGATAAATTTAAAAAAT
*
45139038 TATCGATACATTT
1 TATCGATAAATTT
45139051 TTTGGTATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (20 bp):
TATCGATAAATTTAAAAAAT
Found at i:45141739 original size:26 final size:26
Alignment explanation
Indices: 45141710--45141817 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
45141700 TGGTACAAAT
45141710 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
45141736 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45141762 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45141788 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45141814 TGAT
1 TGAT
45141818 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:45143479 original size:27 final size:27
Alignment explanation
Indices: 45143439--45143525 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
45143429 AGGAAGAGTC
*
45143439 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
45143466 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
45143493 CTAGTAGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
45143520 CTGGTG
1 CTGGTG
45143526 ACTCCATCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.16
27 41 0.82
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:45149511 original size:22 final size:22
Alignment explanation
Indices: 45149475--45149525 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
45149465 AATGACTAAG
* *
45149475 TTTTAGGGTTCCAAGATTATAA
1 TTTTAGAGTTCCAAGATTAGAA
* * *
45149497 TTTTAGAGTTTCAAGTTTAGGA
1 TTTTAGAGTTCCAAGATTAGAA
45149519 TTTTAGA
1 TTTTAGA
45149526 ATATTATTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (22 bp):
TTTTAGAGTTCCAAGATTAGAA
Found at i:45150151 original size:15 final size:17
Alignment explanation
Indices: 45150128--45150160 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
45150118 TGACTTTATT
45150128 AATTACATAA-AATTTA
1 AATTACATAATAATTTA
45150144 AATT-CATAATAATTTA
1 AATTACATAATAATTTA
45150160 A
1 A
45150161 CATATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
AATTACATAATAATTTA
Found at i:45158864 original size:93 final size:94
Alignment explanation
Indices: 45158703--45158892 Score: 364
Period size: 93 Copynumber: 2.0 Consensus size: 94
45158693 GAAGAAGGAA
45158703 ATCAGCTGCTCTGAAGTACATATAAAAAAAAAAACAAGACTCCTTGCAATCTGTATGAGAAGTCA
1 ATCAGCTGCTCTGAAGTACATAT-AAAAAAAAAACAAGACTCCTTGCAATCTGTATGAGAAGTCA
45158768 TTTAGCTAACTTCTCAATCTTGTCTCTTAC
65 TTTAGCTAACTTCTCAATCTTGTCTCTTAC
45158798 ATCAGCTGCTCTGAAGTACATAT-AAAAAAAAACAAGACTCCTTGCAATCTGTATGAGAAGTCAT
1 ATCAGCTGCTCTGAAGTACATATAAAAAAAAAACAAGACTCCTTGCAATCTGTATGAGAAGTCAT
45158862 TTAGCTAACTTCTCAATCTTGTCTCTTAC
66 TTAGCTAACTTCTCAATCTTGTCTCTTAC
45158891 AT
1 AT
45158893 ATATATATAT
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
93 72 0.76
95 23 0.24
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (94 bp):
ATCAGCTGCTCTGAAGTACATATAAAAAAAAAACAAGACTCCTTGCAATCTGTATGAGAAGTCAT
TTAGCTAACTTCTCAATCTTGTCTCTTAC
Found at i:45160642 original size:5 final size:5
Alignment explanation
Indices: 45160632--45160663 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
45160622 TGTTTAACAA
45160632 TTTCT TTTCT TTTCT TTTCT TTTCT TTT-T TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
45160664 AAAAGAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTCT
Found at i:45161153 original size:21 final size:20
Alignment explanation
Indices: 45161120--45161158 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
45161110 ATTTACTACC
*
45161120 AAAATAAATAAATAAATTCT
1 AAAATAAAAAAATAAATTCT
*
45161140 AAAATTAAAAAAATTAATT
1 AAAA-TAAAAAAATAAATT
45161159 TCATTTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATAAAAAAATAAATTCT
Found at i:45163041 original size:18 final size:18
Alignment explanation
Indices: 45163014--45163061 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
45163004 TTTTTTAATG
*
45163014 TTTATAATATATTATTAA
1 TTTATTATATATTATTAA
45163032 TTTATTATATA-T-TTAA
1 TTTATTATATATTATTAA
*
45163048 TTT-TTATTTATTAT
1 TTTATTATATATTAT
45163062 AACTTACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 6 0.23
16 8 0.31
17 2 0.08
18 10 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATTATATATTATTAA
Found at i:45164685 original size:25 final size:25
Alignment explanation
Indices: 45164656--45164716 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
45164646 AATTGTTTCT
45164656 AAAATAATTAAAT-TAATATTTTTA
1 AAAATAATTAAATATAATATTTTTA
* * *
45164680 AGAAAT-ATAATAATATATTATTTTTT
1 A-AAATAATTA-AATATAATATTTTTA
45164706 AAAATAATTAA
1 AAAATAATTAA
45164717 TAATATACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
AAAATAATTAAATATAATATTTTTA
Found at i:45164722 original size:25 final size:25
Alignment explanation
Indices: 45164655--45164722 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
45164645 GAATTGTTTC
* *
45164655 TAAAATAATTAA-ATTAATATTTTT
1 TAAAATAATTAATAATATTATTTTT
* *
45164679 AAGAAATATAATAAT-ATATTATTTTT
1 TA-AAATA-ATTAATAATATTATTTTT
45164705 TAAAATAATTAATAATAT
1 TAAAATAATTAATAATAT
45164723 ACTAAAAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
24 6 0.18
25 14 0.41
26 14 0.41
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (25 bp):
TAAAATAATTAATAATATTATTTTT
Found at i:45170134 original size:39 final size:39
Alignment explanation
Indices: 45170067--45170206 Score: 201
Period size: 39 Copynumber: 3.5 Consensus size: 39
45170057 ACAAAGCATG
* *
45170067 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAAAGCCTT
*
45170107 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAAAGCCTT
*
45170147 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCTT
*
45170186 CGGAACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
45170207 TTCTCCATTA
Statistics
Matches: 95, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 74 0.78
40 21 0.22
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCTT
Found at i:45171500 original size:39 final size:39
Alignment explanation
Indices: 45171446--45171523 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
45171436 CTCTCCCTAA
*
45171446 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
45171485 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
45171524 CAACGTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:45174243 original size:5 final size:6
Alignment explanation
Indices: 45174233--45174257 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
45174223 ATTGATATTA
45174233 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
45174258 AAAATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:45174421 original size:13 final size:14
Alignment explanation
Indices: 45174405--45174446 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
45174395 TTTTGATTTT
45174405 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
45174418 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
45174433 ATTTTAAATAATAT
1 ATTTT-AATAATAT
45174447 TCTTCATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:45174431 original size:16 final size:16
Alignment explanation
Indices: 45174409--45174445 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
45174399 GATTTTATTT
45174409 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
45174426 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
45174441 TAATA
1 TAATA
45174446 TTCTTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:45174497 original size:15 final size:15
Alignment explanation
Indices: 45174477--45174528 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
45174467 ATACAATATT
45174477 AATATTTTAATAATA
1 AATATTTTAATAATA
*
45174492 AATATTTATTGCAATTATA
1 AATA-TT-TT--AATAATA
*
45174511 AATATATTAATAATA
1 AATATTTTAATAATA
45174526 AAT
1 AAT
45174529 GCTTTGCAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.43
16 2 0.07
17 4 0.13
18 1 0.03
19 10 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:45181745 original size:71 final size:72
Alignment explanation
Indices: 45181669--45181810 Score: 205
Period size: 71 Copynumber: 2.0 Consensus size: 72
45181659 TCAGTCTAAA
* * * *
45181669 TAAACAACATGAGTCCAAGTAAACAACAATACAACAAGATTATAATAAAAT-AACATAAGTAATA
1 TAAACAACATGAGTCCAAATAAACAACAACACAACAAGATTATAATAAAATAAACATAAGAAAAA
45181733 GTCCAAG
66 GTCCAAG
* ** *
45181740 TAAACAACTTGAGTTGAAATAAACAACAACACAACAAGATTTTAATAAAATAAACATAAGAAAAA
1 TAAACAACATGAGTCCAAATAAACAACAACACAACAAGATTATAATAAAATAAACATAAGAAAAA
45181805 GTCCAA
66 GTCCAA
45181811 AATACGACAA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
71 45 0.73
72 17 0.27
ACGTcount: A:0.56, C:0.15, G:0.09, T:0.20
Consensus pattern (72 bp):
TAAACAACATGAGTCCAAATAAACAACAACACAACAAGATTATAATAAAATAAACATAAGAAAAA
GTCCAAG
Found at i:45183294 original size:92 final size:93
Alignment explanation
Indices: 45183125--45183303 Score: 249
Period size: 92 Copynumber: 1.9 Consensus size: 93
45183115 GATGACATCA
* * * *
45183125 TATTGGTATAGCGAATTACCGCATTATACTGTACTGTATGTACGTTAGCTACGCTACGTACCATT
1 TATTGGTATAGCGAATTACCACATTACACTGTACTGAATGTACGTTAGCTACGCTACGTACCACT
45183190 GACTGAATTGGCAGTTT-TACTACAATC
66 GACTGAATTGGCAGTTTATACTACAATC
*
45183217 TATTGGTATAGC-AGATTACCACATTACACTGTACTGAATGTACGTTAGCTACGCTATGTACCAC
1 TATTGGTATAGCGA-ATTACCACATTACACTGTACTGAATGTACGTTAGCTACGCTACGTACCAC
*
45183281 T-ATTTG-ATCTGGCAGTTTATACT
65 TGA-CTGAAT-TGGCAGTTTATACT
45183304 GCATGTCTGT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
91 4 0.05
92 69 0.90
93 4 0.05
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (93 bp):
TATTGGTATAGCGAATTACCACATTACACTGTACTGAATGTACGTTAGCTACGCTACGTACCACT
GACTGAATTGGCAGTTTATACTACAATC
Found at i:45185501 original size:19 final size:20
Alignment explanation
Indices: 45185458--45185501 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
45185448 AGTGGGAGGG
*
45185458 AGTAAAAATTATGAGGGAAA
1 AGTAAAAATTATGAGGAAAA
*
45185478 A-TAAAAATTTTGA-GAAAA
1 AGTAAAAATTATGAGGAAAA
45185496 AGTAAA
1 AGTAAA
45185502 TGGGAGAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 5 0.24
19 15 0.71
20 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (20 bp):
AGTAAAAATTATGAGGAAAA
Found at i:45185681 original size:9 final size:9
Alignment explanation
Indices: 45185667--45185703 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
45185657 TATAGTTTAA
45185667 TATTCGAAT
1 TATTCGAAT
45185676 TATTCGAAT
1 TATTCGAAT
*
45185685 TATTCGAGT
1 TATTCGAAT
*
45185694 TATTCAAAT
1 TATTCGAAT
45185703 T
1 T
45185704 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45188900 original size:3 final size:3
Alignment explanation
Indices: 45188892--45188939 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
45188882 TAAATGAACT
* * *
45188892 GAA GAA GAA GAA GAA GAA GAA TAA GAA GAA GAA GAA GAG GAT GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
45188940 TGGAAAGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:45204115 original size:47 final size:47
Alignment explanation
Indices: 45204049--45206268 Score: 4101
Period size: 47 Copynumber: 47.1 Consensus size: 47
45204039 GAAATGATAG
*
45204049 TAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204096 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204143 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204190 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204237 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204284 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204331 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45204380 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45204428 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204475 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204522 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45204571 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45204619 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204666 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204713 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204807 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45204856 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
45204903 TAAGGCCTAGTGGCCGATGTGATGAATCTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45204950 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45204997 TAAGGCCTATTGGCCGATGTGATGAATGTGAAAGTGTATA-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45205043 TAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205090 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205137 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205184 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45205231 TAAGGCCTAATGCCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205278 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205325 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205371 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205418 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
45205465 TAAGGCCTAATGGCCGTTGTGATGAATATGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205512 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205559 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205606 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45205653 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205700 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205747 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205794 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45205841 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45205888 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
45205937 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45205984 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGA
*
45206032 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45206079 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45206126 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45206172 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
45206218 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45206265 TAAG
1 TAAG
45206269 TCCCGAAGGG
Statistics
Matches: 2125, Mismatches: 33, Indels: 30
0.97 0.02 0.01
Matches are distributed among these distances:
46 175 0.08
47 1624 0.76
48 141 0.07
49 185 0.09
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:45206442 original size:36 final size:37
Alignment explanation
Indices: 45206387--45206464 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
45206377 CCGAGCTCTA
* * *
45206387 AAGACCCGATGACTACGTGTGG-GATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45206423 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45206460 AAGAC
1 AAGAC
45206465 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.54
37 17 0.46
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45220382 original size:29 final size:30
Alignment explanation
Indices: 45220345--45220415 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
45220335 AGGAAACTAC
**
45220345 TAAATTTTGGGCCTACG-AGTGTTAACTTAT
1 TAAA-TTTGGGCCTACGAAGCCTTAACTTAT
* *
45220375 TAAATTTGGGCTTAGGAAGCCTTAACTTAT
1 TAAATTTGGGCCTACGAAGCCTTAACTTAT
*
45220405 TACATTTGGGC
1 TAAATTTGGGC
45220416 TATGGGTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 10 0.29
30 25 0.71
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (30 bp):
TAAATTTGGGCCTACGAAGCCTTAACTTAT
Found at i:45222802 original size:23 final size:22
Alignment explanation
Indices: 45222761--45222811 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
45222751 TACCAAATAA
* *
45222761 AATAATAAAATAATCATAAATAT
1 AATATTAAAATAATAATAAA-AT
* *
45222784 ATTATTAAAATATTAATAAAAT
1 AATATTAAAATAATAATAAAAT
45222806 AATATT
1 AATATT
45222812 TATCTAATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
AATATTAAAATAATAATAAAAT
Found at i:45224390 original size:16 final size:17
Alignment explanation
Indices: 45224369--45224401 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45224359 TTTATCAATA
45224369 TAAAG-ATAAATATTTT
1 TAAAGAATAAATATTTT
45224385 TAAAGAATAAATATTTT
1 TAAAGAATAAATATTTT
45224402 ATATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TAAAGAATAAATATTTT
Found at i:45226683 original size:69 final size:69
Alignment explanation
Indices: 45226610--45226894 Score: 257
Period size: 69 Copynumber: 4.1 Consensus size: 69
45226600 CTGACCCTCC
* * * * *
45226610 TTATCGCCTTTTCCACCATCTGCCTGTCCTCTGGCTTCAAACTGCGATTCTTCCTTACCCTTTTA
1 TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCTTCAAACTGCGATTCTTCCTTACCCTTTTG
*
45226675 CTCG
66 CTCA
** *** * * * * * *
45226679 TTATCACCTTTTGTATTGTCCACTTTTCCTCCGGCTTCAAACCGCAATTCGTCCTTACCCTTGTG
1 TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCTTCAAACTGCGATTCTTCCTTACCCTTTTG
45226744 CTCA
66 CTCA
* * * * *
45226748 TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCATCAAAATGTGATTCTTGCTTAGCCTTTTG
1 TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCTTCAAACTGCGATTCTTCCTTACCCTTTTG
*
45226813 CACA
66 CTCA
* ** * * * ** *
45226817 TTATCACCTTCTCCACCATTGGTCTTTCCTCCGGTTTC-AACATGTGATTCTTCCCGACCCTTGT
1 TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCTTCAAAC-TGCGATTCTTCCTTACCCTTTT
45226881 GCTCA
65 GCTCA
*
45226886 ATATCACCT
1 TTATCACCT
45226895 CCTTGTTCAT
Statistics
Matches: 167, Mismatches: 48, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
68 2 0.01
69 165 0.99
ACGTcount: A:0.16, C:0.34, G:0.12, T:0.38
Consensus pattern (69 bp):
TTATCACCTTTTCCACCATCCGCCTTTCCTCCGGCTTCAAACTGCGATTCTTCCTTACCCTTTTG
CTCA
Found at i:45231092 original size:21 final size:22
Alignment explanation
Indices: 45231066--45231106 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
45231056 TGTATTTTTG
45231066 TGTTTAATGG-TAGA-AAATGCA
1 TGTTT-ATGGTTAGAGAAATGCA
45231087 TGTTTATGGTTAGAGAAATG
1 TGTTTATGGTTAGAGAAATG
45231107 ACTTTTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (22 bp):
TGTTTATGGTTAGAGAAATGCA
Found at i:45231555 original size:24 final size:24
Alignment explanation
Indices: 45231511--45231564 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
45231501 ATGAAATGCT
*
45231511 ATATT-TATGTTTTAAATTGATTTA
1 ATATTATATGATTTAAATTGA-TTA
* *
45231535 ATATTATATGATTTATA-TGATTG
1 ATATTATATGATTTAAATTGATTA
45231558 ATATTAT
1 ATATTAT
45231565 GAGCAAGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 9 0.35
24 8 0.31
25 9 0.35
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (24 bp):
ATATTATATGATTTAAATTGATTA
Found at i:45234636 original size:16 final size:17
Alignment explanation
Indices: 45234605--45234637 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45234595 TTCATAAGTA
45234605 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
45234622 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
45234638 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:45234973 original size:46 final size:46
Alignment explanation
Indices: 45234918--45235188 Score: 316
Period size: 46 Copynumber: 5.9 Consensus size: 46
45234908 TTATCTTTGA
* * * *
45234918 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTAT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* * *** *
45234964 TAGGATGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATGTT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-T-AT
*
45235011 ACAT--TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 -CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* * *
45235056 CCTGTTGCCATGGTATCTTTCGACCATGGTCTTACACA-TTTCATAT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* *
45235102 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *
45235148 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTT
45235189 CATTTCAGAA
Statistics
Matches: 195, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.01
45 8 0.04
46 177 0.91
47 7 0.04
48 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:45235082 original size:92 final size:92
Alignment explanation
Indices: 45234923--45235191 Score: 385
Period size: 92 Copynumber: 2.9 Consensus size: 92
45234913 TTTGACATGA
* * * * * *** *
45234923 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTATTAGGATGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAAC
*** * *
45234988 CATGGTCTTGTTCATTTCATGTTACAT
66 CATGGTCTTACACATTTCATATCACAT
*
45235015 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCGAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAAC
**
45235080 CATGGTCTTACACATTTCATATCATGT
66 CATGGTCTTACACATTTCATATCACAT
45235107 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAAC
45235172 CATGGTCTTACACATTTCAT
66 CATGGTCTTACACATTTCAT
45235192 TTCAGAAAGC
Statistics
Matches: 159, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 159 1.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACAT
Found at i:45235171 original size:138 final size:138
Alignment explanation
Indices: 45234923--45235188 Score: 365
Period size: 138 Copynumber: 1.9 Consensus size: 138
45234913 TTTGACATGA
* * * *
45234923 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTATTAGGATGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGATGCCATGGTATCTTTCAAC
*** *
45234988 CATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
66 CATGGTCTTACACATTTCATGATACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
45235053 TATCCTGT
131 TATCCTGT
* * * *
45235061 TGCCATGGTATCTTTCGACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGATGCCATGGTATCTTTCAA
* * *
45235125 CCATGGTCTTACACATTTTAT-ATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
65 CCATGGTCTTACACATTTCATGATAC-ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
45235189 CATTTCAGAA
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
137 6 0.05
138 105 0.95
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGATGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATGATACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
TATCCTGT
Found at i:45238586 original size:29 final size:28
Alignment explanation
Indices: 45238535--45238600 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
45238525 TACATGCAAA
45238535 AATATAAATGAAAAAAATAAAAACTTTAC
1 AATATAAATGAAAAAAATAAAAA-TTTAC
* * **
45238564 AATATAAATG-CATAAATACAAAATTTGT
1 AATATAAATGAAAAAAATA-AAAATTTAC
45238592 AATATAAAT
1 AATATAAAT
45238601 TAGATGCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.29
Consensus pattern (28 bp):
AATATAAATGAAAAAAATAAAAATTTAC
Found at i:45241945 original size:20 final size:20
Alignment explanation
Indices: 45241920--45241969 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
45241910 CACAGTTGTT
*
45241920 GTAGAGCAACAAAATCATTA
1 GTAGAGCAACAAAATAATTA
45241940 GTAGAGCAACAAAATAATTA
1 GTAGAGCAACAAAATAATTA
*
45241960 GTAGGGCAAC
1 GTAGAGCAAC
45241970 CATTTGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (20 bp):
GTAGAGCAACAAAATAATTA
Found at i:45242238 original size:24 final size:24
Alignment explanation
Indices: 45242211--45242257 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45242201 TTTAGAGAAT
45242211 TTTGTGTTT-ATGTTTTTAGGGTTC
1 TTTGTGTTTGA-GTTTTTAGGGTTC
* *
45242235 TTTGTTTTTGAGTTTTTGGGGTT
1 TTTGTGTTTGAGTTTTTAGGGTT
45242258 TAGTTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.06, C:0.02, G:0.28, T:0.64
Consensus pattern (24 bp):
TTTGTGTTTGAGTTTTTAGGGTTC
Found at i:45245095 original size:48 final size:48
Alignment explanation
Indices: 45245002--45245124 Score: 124
Period size: 48 Copynumber: 2.6 Consensus size: 48
45244992 TAGGGTTTGG
*
45245002 CATGACATTTGGCAATCTGCCCATAGGTGTGGTGACTTCCGGTTTGAC
1 CATGACATTTGGCAATCTGCCCATAGGTGTGGTGACTTCCCGTTTGAC
* * * ** *
45245050 CATGGCATTTGGCAGTCTGCCCAT-GATTGTGGTGGGTTCCCGTTTGGC
1 CATGACATTTGGCAATCTGCCCATAG-GTGTGGTGACTTCCCGTTTGAC
* * *
45245098 TACGACA-TTGAACAATCTGCCCATAGG
1 CATGACATTTG-GCAATCTGCCCATAGG
45245125 CGTAGAGGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
47 4 0.07
48 54 0.92
49 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.30
Consensus pattern (48 bp):
CATGACATTTGGCAATCTGCCCATAGGTGTGGTGACTTCCCGTTTGAC
Found at i:45245192 original size:48 final size:48
Alignment explanation
Indices: 45245017--45245192 Score: 144
Period size: 48 Copynumber: 3.7 Consensus size: 48
45245007 CATTTGGCAA
* * * * *
45245017 TCTGCCCATAGGTGTGGTGACTTCCGGTTTGACCATGGCATTTG-GCAG
1 TCTGCCCATAGGTGTGATGGCTTCCAGTTTGGCCATGGCA-TTGAACAG
* * * * * * * *
45245065 TCTGCCCAT-GATTGTGGTGGGTTCCCGTTTGGCTACGACATTGAACAA
1 TCTGCCCATAG-GTGTGATGGCTTCCAGTTTGGCCATGGCATTGAACAG
* *
45245113 TCTGCCCATAGGCGTAGA-GGGTTCCTA-TTTGGCCATGGCATTGAACAG
1 TCTGCCCATAGGTGT-GATGGCTTCC-AGTTTGGCCATGGCATTGAACAG
*
45245161 TCTGCCCATAGGTGTGATAGCTTCCAGTTTGG
1 TCTGCCCATAGGTGTGATGGCTTCCAGTTTGG
45245193 TTGTGGCATT
Statistics
Matches: 100, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
47 7 0.07
48 91 0.91
49 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.31
Consensus pattern (48 bp):
TCTGCCCATAGGTGTGATGGCTTCCAGTTTGGCCATGGCATTGAACAG
Found at i:45245276 original size:11 final size:11
Alignment explanation
Indices: 45245260--45245285 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45245250 ATATACCCTG
45245260 TTGGATTGCAT
1 TTGGATTGCAT
45245271 TTGGATTGCAT
1 TTGGATTGCAT
45245282 TTGG
1 TTGG
45245286 TATCCCTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.31, T:0.46
Consensus pattern (11 bp):
TTGGATTGCAT
Found at i:45246210 original size:16 final size:15
Alignment explanation
Indices: 45246189--45246233 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
45246179 ATAATATGTG
45246189 AATAATATTATTTAAA
1 AATAATATTA-TTAAA
45246205 AATAATATTATT-AA
1 AATAATATTATTAAA
*
45246219 AAT-TTATTATTAAA
1 AATAATATTATTAAA
45246233 A
1 A
45246234 TGAAATTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 7 0.26
14 8 0.30
15 2 0.07
16 10 0.37
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATAATATTATTAAA
Found at i:45246226 original size:13 final size:13
Alignment explanation
Indices: 45246210--45246234 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45246200 TTAAAAATAA
45246210 TATTATTAAAATT
1 TATTATTAAAATT
45246223 TATTATTAAAAT
1 TATTATTAAAAT
45246235 GAAATTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTATTAAAATT
Found at i:45246271 original size:20 final size:22
Alignment explanation
Indices: 45246242--45246283 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
45246232 AATGAAATTG
*
45246242 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
45246262 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
45246284 TAGGACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:45246518 original size:14 final size:15
Alignment explanation
Indices: 45246501--45246530 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45246491 AACATGGAAT
45246501 TTATTTTT-AAATTA
1 TTATTTTTGAAATTA
45246515 TTATTTTTGAAATTA
1 TTATTTTTGAAATTA
45246530 T
1 T
45246531 ACAATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TTATTTTTGAAATTA
Found at i:45246677 original size:8 final size:8
Alignment explanation
Indices: 45246666--45246701 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
45246656 GAAATTTAAG
45246666 AAAAAATA
1 AAAAAATA
45246674 AAAAAATA
1 AAAAAATA
*
45246682 GAAAAAT-
1 AAAAAATA
45246689 AAAAAATA
1 AAAAAATA
45246697 AAAAA
1 AAAAA
45246702 TTTGATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:45246692 original size:6 final size:7
Alignment explanation
Indices: 45246666--45246702 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
45246656 GAAATTTAAG
45246666 AAAAAAT
1 AAAAAAT
45246673 AAAAAAAT
1 -AAAAAAT
45246681 AGAAAAAT
1 A-AAAAAT
45246689 AAAAAAT
1 AAAAAAT
45246696 AAAAAAT
1 AAAAAAT
45246703 TTGATAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 14 0.50
8 14 0.50
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:45261292 original size:23 final size:22
Alignment explanation
Indices: 45261252--45261312 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
45261242 TTCACACCAT
45261252 TTTTCAATTACAATTTTT-CAC
1 TTTTCAATTACAATTTTTCCAC
45261273 ATTTTCAATT-CAATCATTTTCCAC
1 -TTTTCAATTACAAT--TTTTCCAC
*
45261297 TTTTCAATCA-AATTTT
1 TTTTCAATTACAATTTT
45261313 CAATTCACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
21 7 0.21
22 9 0.26
23 15 0.44
24 3 0.09
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTCAATTACAATTTTTCCAC
Found at i:45261799 original size:17 final size:18
Alignment explanation
Indices: 45261765--45261800 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45261755 TGAATTTCTA
45261765 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
45261783 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
45261800 T
1 T
45261801 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Done.