Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 134 of 295
Found at i:45877601 original size:83 final size:81
Alignment explanation
Indices: 45877455--45877670 Score: 362
Period size: 83 Copynumber: 2.7 Consensus size: 81
45877445 GTCACCAGAT
* *
45877455 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATAATTG
45877519 TGGCATAGCCACCAGG
66 TGGCATAGCCACCAGG
* *
45877535 ACAGATATATGTGGCAGAGCCACCAGGTTAGATAATTGTGTGGCAGAGCCACCAGATCAGATAAT
1 ACAGATATATGTGGCAGAGCCACCAGATCAGAT-ATT-TGTGGCAGAGCCACCAGATCAGATAAT
45877600 TGTGGCATAGCCACCAGG
64 TGTGGCATAGCCACCAGG
*
45877618 ACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCACCAG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAG
45877671 GACGCTTCCT
Statistics
Matches: 126, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
80 8 0.06
81 37 0.29
82 5 0.04
83 76 0.60
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.19
Consensus pattern (81 bp):
ACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATAATTG
TGGCATAGCCACCAGG
Found at i:45880702 original size:3 final size:3
Alignment explanation
Indices: 45880694--45880724 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
45880684 TTCAAATTGA
45880694 AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
45880725 ATATTTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45880728 original size:12 final size:11
Alignment explanation
Indices: 45880694--45880724 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
45880684 TTCAAATTGA
45880694 AATAATAATAAT
1 AATAATAAT-AT
45880706 AATAATAATAT
1 AATAATAATAT
45880717 AATAATAA
1 AATAATAA
45880725 ATATTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAATAATAT
Found at i:45881780 original size:12 final size:13
Alignment explanation
Indices: 45881744--45881781 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
45881734 AAATATTTGA
45881744 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
45881757 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
45881771 CTTG-TCTTAAT
1 CTTGTTCTTAAT
45881782 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:45885439 original size:9 final size:9
Alignment explanation
Indices: 45885425--45885449 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
45885415 TTCTTCAGCT
45885425 TAATTTTTA
1 TAATTTTTA
45885434 TAATTTTTA
1 TAATTTTTA
45885443 TAATTTT
1 TAATTTT
45885450 ATTATTTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TAATTTTTA
Found at i:45886391 original size:27 final size:27
Alignment explanation
Indices: 45886352--45886405 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
45886342 GATTTTTTAC
*
45886352 AAAAATGTCAATT-AGGGATTAAATTG
1 AAAAATGTAAATTGAGGGATTAAATTG
*
45886378 AAAAAGTGTAAATTGAGGGGTTAAATTG
1 AAAAA-TGTAAATTGAGGGATTAAATTG
45886406 TCAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 7 0.29
28 12 0.50
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.30
Consensus pattern (27 bp):
AAAAATGTAAATTGAGGGATTAAATTG
Found at i:45886943 original size:43 final size:43
Alignment explanation
Indices: 45886895--45887040 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
45886885 ATCGAGATGA
* *
45886895 GATTACATGTAAGACCATGTTTGGGACATTGGAATTG-TATTGT
1 GATTACATGTAAGACCATGTTTGGGACATTGGAATCGTTA-TAT
* * *
45886938 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTTATAT
1 GATTACATGTAAGACCATGTTTGGGACATTGGAATCGTTATAT
* * * * *
45886981 GATTTCATGTAAGACCACGTTTGGGACGTTGGCATCGATATAT
1 GATTACATGTAAGACCATGTTTGGGACATTGGAATCGTTATAT
* *
45887024 GATAACA-ATAAGACCAT
1 GATTACATGTAAGACCAT
45887041 ATCTGGGATA
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 8 0.09
43 77 0.89
44 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTTTGGGACATTGGAATCGTTATAT
Found at i:45894581 original size:43 final size:42
Alignment explanation
Indices: 45894494--45894638 Score: 155
Period size: 43 Copynumber: 3.4 Consensus size: 42
45894484 CGAGATGAGG
* * * * *
45894494 TTACATGTAAGGCCATGTCTGGGACATTGGAATTGTATTGTGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATCGTA-TATGA
* *
45894537 TTACGTGTAAGACCATGTCTAGGAAATTGGCATCGTTATATGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATCG-TATATGA
* * * *
45894580 TTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATATATGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATCG-TATATGA
*
45894623 TAACATGTAAGACCAT
1 TTACATGTAAGACCAT
45894639 ATCTGGGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 83 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACATTGGCATCGTATATGA
Found at i:45895015 original size:43 final size:43
Alignment explanation
Indices: 45894956--45895042 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
45894946 TACTTTGTGT
* * * * *
45894956 GTTCATTCTCTGTTTTATAGATTATTAAAGCTAGTTCAGACTC
1 GTTCATTCTCTATTTTACAGATTATCAAAGCAAGCTCAGACTC
* *
45894999 GTTCGTTCTCTATTTTACAGATTATCGAAGCAAGCTCAGACTC
1 GTTCATTCTCTATTTTACAGATTATCAAAGCAAGCTCAGACTC
45895042 G
1 G
45895043 AGGATCATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (43 bp):
GTTCATTCTCTATTTTACAGATTATCAAAGCAAGCTCAGACTC
Found at i:45898475 original size:41 final size:41
Alignment explanation
Indices: 45898420--45898597 Score: 153
Period size: 41 Copynumber: 4.4 Consensus size: 41
45898410 GCACAAACGT
* * * *
45898420 CCTTCAAAATCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGAAACCAAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
45898461 CCTTCGAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGAAACCAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * * * *
45898502 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGAAACCAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * * *
45898542 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAGGC
1 CCTTCGAAACCAAGCCCGATTATGAGCACTGGCTCAAAAGC
45898583 CCTTCGAAACCAAGC
1 CCTTCGAAACCAAGC
45898598 TAGAATTTAA
Statistics
Matches: 110, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
40 40 0.36
41 65 0.59
42 5 0.05
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (41 bp):
CCTTCGAAACCAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:45901032 original size:16 final size:17
Alignment explanation
Indices: 45901011--45901043 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
45901001 AACATTACGG
*
45901011 GCAAAATTAT-AATTTT
1 GCAAAATCATAAATTTT
45901027 GCAAAATCATAAATTTT
1 GCAAAATCATAAATTTT
45901044 AGACTGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.39
Consensus pattern (17 bp):
GCAAAATCATAAATTTT
Found at i:45904133 original size:93 final size:93
Alignment explanation
Indices: 45904021--45904192 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
45904011 GCCCATAAGT
* *
45904021 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45904086 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
45904114 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45904179 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
45904193 CAAATCCTAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:45904188 original size:46 final size:46
Alignment explanation
Indices: 45904013--45904188 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
45904003 TGTAACCCGC
* *
45904013 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
45904059 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
45904105 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
45904152 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
45904189 TGCCCAAATC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:45906591 original size:15 final size:15
Alignment explanation
Indices: 45906559--45906622 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
45906549 CAAAGATAAC
45906559 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
45906572 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
45906587 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
45906602 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
45906617 AAGAAA
1 AAGAAA
45906623 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 3 0.07
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45915932 original size:46 final size:46
Alignment explanation
Indices: 45915882--45916057 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
45915872 TGATTGAGCA
45915882 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45915928 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
45915973 CATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45916021 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45916058 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.55
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45916038 original size:93 final size:93
Alignment explanation
Indices: 45915879--45916050 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
45915869 GGATGATTGA
* *
45915879 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
45915944 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
45915972 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
45916036 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
45916051 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45924762 original size:27 final size:27
Alignment explanation
Indices: 45924731--45924908 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45924721 TAAATTGTAC
45924731 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45924758 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45924784 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45924812 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45924840 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45924867 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45924894 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45924909 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45924845 original size:82 final size:81
Alignment explanation
Indices: 45924732--45924887 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45924722 AAATTGTACA
* *
45924732 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45924796 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
45924813 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45924878 TGCGAGTTGA
65 TGCGAATTGA
45924888 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45924899 original size:82 final size:81
Alignment explanation
Indices: 45924728--45924908 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
45924718 GATTAAATTG
* *
45924728 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45924793 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
45924809 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45924873 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45924891 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45924909 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45934625 original size:6 final size:6
Alignment explanation
Indices: 45934610--45934645 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
45934600 TTTCTTAATG
45934610 TTTA-T TTTATT TTTATT TTTATT TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
45934646 CTTTTGGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:45934626 original size:11 final size:11
Alignment explanation
Indices: 45934610--45934645 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
45934600 TTTCTTAATG
45934610 TTTATTTTATT
1 TTTATTTTATT
45934621 TTTATTTTTATT
1 TTTA-TTTTATT
45934633 TTTATTTTATT
1 TTTATTTTATT
45934644 TT
1 TT
45934646 CTTTTGGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:45934710 original size:11 final size:12
Alignment explanation
Indices: 45934668--45934710 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
45934658 TCTCCATCAT
45934668 TTTTTTTCTCTC
1 TTTTTTTCTCTC
45934680 TTTTCTTTCT-TC
1 TTTT-TTTCTCTC
*
45934692 TTTCTTTCTCT-
1 TTTTTTTCTCTC
45934703 TTTTTTTC
1 TTTTTTTC
45934711 AATTTTTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 12 0.44
12 10 0.37
13 5 0.19
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTTCTCTC
Found at i:45937726 original size:15 final size:15
Alignment explanation
Indices: 45937706--45937736 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45937696 AAGTATATAT
45937706 CTAGTTCAGACTTAA
1 CTAGTTCAGACTTAA
*
45937721 CTAGTTTAGACTTAA
1 CTAGTTCAGACTTAA
45937736 C
1 C
45937737 ATTATTAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (15 bp):
CTAGTTCAGACTTAA
Found at i:45952349 original size:9 final size:9
Alignment explanation
Indices: 45952332--45952364 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
45952322 TAAAAACTTA
45952332 ATCATCTAC
1 ATCATCTAC
*
45952341 ATTATCTAC
1 ATCATCTAC
45952350 ATCATCTAC
1 ATCATCTAC
45952359 ATCATC
1 ATCATC
45952365 CTCTCCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (9 bp):
ATCATCTAC
Found at i:45955577 original size:16 final size:17
Alignment explanation
Indices: 45955551--45955585 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
45955541 CTAAACCCCC
*
45955551 TAAATACCTAAGAGGAA
1 TAAATACCTAAGACGAA
45955568 TAAA-ACCTAAGACGAA
1 TAAATACCTAAGACGAA
45955584 TA
1 TA
45955586 TTCTTATCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.17
Consensus pattern (17 bp):
TAAATACCTAAGACGAA
Found at i:45960563 original size:96 final size:96
Alignment explanation
Indices: 45960399--45960581 Score: 330
Period size: 96 Copynumber: 1.9 Consensus size: 96
45960389 AACCCCTCGG
*
45960399 AAAAATATGATGGAGCCATATTCCAGCCCATGCGACAAAAACAGAACAACTCATGAAGAACAAAT
1 AAAAATATGATGGAGCCACATTCCAGCCCATGCGACAAAAACAGAACAACTCATGAAGAACAAAT
45960464 GTTATAGATCGATGAACTAGACGAATCTCAA
66 GTTATAGATCGATGAACTAGACGAATCTCAA
* * *
45960495 AAAAATGTGATGGAGCCACATTCCAGCCCATGCGACAGAAACAGAACAACTCATGAAGAACGAAT
1 AAAAATATGATGGAGCCACATTCCAGCCCATGCGACAAAAACAGAACAACTCATGAAGAACAAAT
45960560 GTTATAGATCGATGAACTAGAC
66 GTTATAGATCGATGAACTAGAC
45960582 AAATGGCGAA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (96 bp):
AAAAATATGATGGAGCCACATTCCAGCCCATGCGACAAAAACAGAACAACTCATGAAGAACAAAT
GTTATAGATCGATGAACTAGACGAATCTCAA
Found at i:45960997 original size:32 final size:32
Alignment explanation
Indices: 45960956--45961019 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
45960946 CCCGAGTGTT
*
45960956 AACACTGCTAATTTTCTTAATTTTATTTCATG
1 AACACTGCTAAGTTTCTTAATTTTATTTCATG
45960988 AACACTGCTAAGTTTCTTAATTTTATTTCATG
1 AACACTGCTAAGTTTCTTAATTTTATTTCATG
45961020 TTATTTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (32 bp):
AACACTGCTAAGTTTCTTAATTTTATTTCATG
Found at i:45961974 original size:10 final size:11
Alignment explanation
Indices: 45961958--45961987 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
45961948 TCATTCTTTC
45961958 TTTTTATTTTA
1 TTTTTATTTTA
45961969 -TTTTATTTTA
1 TTTTTATTTTA
45961979 TTTTTATTT
1 TTTTTATTT
45961988 ATCTGGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:45963714 original size:7 final size:7
Alignment explanation
Indices: 45963702--45963751 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
45963692 AGTCTATTTG
45963702 TTTTATT
1 TTTTATT
45963709 TTTTATT
1 TTTTATT
45963716 TTTT-TAT
1 TTTTAT-T
45963723 TTTTA-T
1 TTTTATT
45963729 TTTTA-T
1 TTTTATT
*
45963735 GTTTA-T
1 TTTTATT
45963741 TTTTATT
1 TTTTATT
45963748 TTTT
1 TTTT
45963752 TAGAGTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 17 0.45
7 21 0.55
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (7 bp):
TTTTATT
Found at i:45963717 original size:6 final size:6
Alignment explanation
Indices: 45963702--45963750 Score: 62
Period size: 6 Copynumber: 7.7 Consensus size: 6
45963692 AGTCTATTTG
*
45963702 TTTTATT TTTTATTT TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT TTTT
1 TTTTA-T TTTTA--T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
45963751 TTAGAGTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
6 27 0.69
7 5 0.13
8 7 0.18
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:45966814 original size:67 final size:67
Alignment explanation
Indices: 45966706--45966858 Score: 191
Period size: 67 Copynumber: 2.3 Consensus size: 67
45966696 GTGTATTGTG
** * * * *
45966706 ATATATGTGTAATGTGATGAATGTCTAAATGATTATGTGGTTGCCTATGCAAATTATCTTAAA-A
1 ATATATGTGTAATGTGATGAATACCCAAATGAGTATGTGGTT-ACTATGCAAATTATCCTAAATA
*
45966770 TGT
65 TGA
* *
45966773 ATATATGTGTAATGTGATGTATACCCAAATGAGTGTGTGGTTACTATGCAAATTATCCTAAATTA
1 ATATATGTGTAATGTGATGAATACCCAAATGAGTATGTGGTTACTATGCAAATTATCCTAAA-TA
45966838 TGA
65 TGA
*
45966841 ATATATGTGTATTGTGAT
1 ATATATGTGTAATGTGAT
45966859 ATTTGTTTAT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
66 18 0.24
67 36 0.49
68 20 0.27
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (67 bp):
ATATATGTGTAATGTGATGAATACCCAAATGAGTATGTGGTTACTATGCAAATTATCCTAAATAT
GA
Found at i:45966957 original size:39 final size:39
Alignment explanation
Indices: 45966914--45966989 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
45966904 ATGTTTTTGA
*
45966914 GTATTGCGATATATGCTTCAATGTTATGTGATTATATGG
1 GTATTGCGATATATGCTTCAATGTTAGGTGATTATATGG
* ***
45966953 GTATTGTGATATATGCTTGTGTGTTAGGTGATTATAT
1 GTATTGCGATATATGCTTCAATGTTAGGTGATTATAT
45966990 ATGTAATATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.24, C:0.05, G:0.25, T:0.46
Consensus pattern (39 bp):
GTATTGCGATATATGCTTCAATGTTAGGTGATTATATGG
Found at i:45967005 original size:39 final size:39
Alignment explanation
Indices: 45966921--45967010 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 39
45966911 TGAGTATTGC
*** * * * *
45966921 GATATATGCTTCAATGTTATGTGATTATATGGGTATTGT
1 GATATATGCTTGTGTGTTAGGTGATTATATAGGTAATAT
*
45966960 GATATATGCTTGTGTGTTAGGTGATTATATATGTAATAT
1 GATATATGCTTGTGTGTTAGGTGATTATATAGGTAATAT
*
45966999 GGTATATGCTTG
1 GATATATGCTTG
45967011 AAAGTGAATA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (39 bp):
GATATATGCTTGTGTGTTAGGTGATTATATAGGTAATAT
Found at i:45970290 original size:32 final size:32
Alignment explanation
Indices: 45970248--45970326 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
45970238 AAGGTGTAGC
* * * *
45970248 CATGTAGGCCACATGAGCTAGGCCAGA-CTGGG
1 CATGTGGGCCACACGAGCAAGGCCA-ATCTGGA
*
45970280 CATGTGGGCCACACGGGCAAGGCCAATCTGGA
1 CATGTGGGCCACACGAGCAAGGCCAATCTGGA
*
45970312 CGTGTGGGCCACACG
1 CATGTGGGCCACACG
45970327 GGCATATGGG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
31 1 0.03
32 39 0.98
ACGTcount: A:0.23, C:0.28, G:0.35, T:0.14
Consensus pattern (32 bp):
CATGTGGGCCACACGAGCAAGGCCAATCTGGA
Found at i:45970338 original size:17 final size:17
Alignment explanation
Indices: 45970316--45970356 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
45970306 TCTGGACGTG
45970316 TGGGCCACACGGGCATA
1 TGGGCCACACGGGCATA
* *
45970333 TGGGCCCATACGGGCATG
1 TGGG-CCACACGGGCATA
45970351 TGGGCC
1 TGGGCC
45970357 CTAGATTCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.17, C:0.29, G:0.39, T:0.15
Consensus pattern (17 bp):
TGGGCCACACGGGCATA
Found at i:45971192 original size:13 final size:13
Alignment explanation
Indices: 45971174--45971199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45971164 CACTTTATAC
45971174 AACAAATGGTTTT
1 AACAAATGGTTTT
45971187 AACAAATGGTTTT
1 AACAAATGGTTTT
45971200 TGGAAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:45976366 original size:43 final size:43
Alignment explanation
Indices: 45976313--45976530 Score: 251
Period size: 43 Copynumber: 5.1 Consensus size: 43
45976303 TGCATATAGA
* * *
45976313 CATCGATATGTGATTACGTGTAAGATCACGTCTAGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * *
45976356 CATCGGTATGTGATTACATGTAAGACCACGTCTGGGACGTTAG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
45976399 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * * * * *
45976442 CATCTATATGTGTTTATGAGTAAGATTC-TGTTTGGGACAG-TGG
1 CATCGATATGTGATTACGTGTAAGA-CCACGTCTGGGAC-GTTGG
* * * *
45976485 CATCGATATGAGATTACATGTAAGACCACATCAGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
45976528 CAT
1 CAT
45976531 TGTACCATAT
Statistics
Matches: 144, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
42 2 0.01
43 140 0.97
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
Found at i:45976849 original size:23 final size:24
Alignment explanation
Indices: 45976809--45976853 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
45976799 ATAATTGGCC
45976809 AAATGAAAAGTATATGTGATTTTGT
1 AAATGAAAAGTATATGTG-TTTTGT
45976834 AAATG-AAA-TATATGTGTTTT
1 AAATGAAAAGTATATGTGTTTT
45976854 CATATTTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 3 0.15
25 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (24 bp):
AAATGAAAAGTATATGTGTTTTGT
Found at i:45987412 original size:7 final size:6
Alignment explanation
Indices: 45987377--45987410 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
45987367 TTTTAAATCA
45987377 TATTTT TATTTT TATTTT TATTTT TATATTT TAT
1 TATTTT TATTTT TATTTT TATTTT TAT-TTT TAT
45987411 ATATTATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:45988466 original size:28 final size:27
Alignment explanation
Indices: 45988426--45988482 Score: 96
Period size: 28 Copynumber: 2.1 Consensus size: 27
45988416 ACTTTTTTTT
*
45988426 TTAAGTTAGTCACTTTGAATAAAAATAA
1 TTAAGTTAGTCACTTTAAAT-AAAATAA
45988454 TTAAGTTAGTCACTTTAAATAAAATAA
1 TTAAGTTAGTCACTTTAAATAAAATAA
45988481 TT
1 TT
45988483 GTGTAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (27 bp):
TTAAGTTAGTCACTTTAAATAAAATAA
Found at i:45989571 original size:20 final size:19
Alignment explanation
Indices: 45989542--45989580 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
45989532 AATCTGTGTG
45989542 TTTTTATTTTATTTTTTTA
1 TTTTTATTTTATTTTTTTA
45989561 TTTTTACTTTTATTTTTTTA
1 TTTTTA-TTTTATTTTTTTA
45989581 AAACAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTATTTTATTTTTTTA
Found at i:45996527 original size:24 final size:23
Alignment explanation
Indices: 45996500--45996560 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
45996490 ATATAGTATT
45996500 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
45996524 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
45996548 TAAGAAATATATA
1 TAA-AAATATATA
45996561 TAATTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:45996714 original size:23 final size:22
Alignment explanation
Indices: 45996687--45996803 Score: 96
Period size: 23 Copynumber: 5.3 Consensus size: 22
45996677 ACACATATAT
* *
45996687 ATATAGAAATAATAGTATTAGAA
1 ATATA-AAATAATAATATTAAAA
*
45996710 ATATACAAT-ATAATATTAAAA
1 ATATAAAATAATAATATTAAAA
* * *
45996731 ATATACATATAATAGTATAAAAA
1 ATATA-AAATAATAATATTAAAA
*
45996754 ATATATAACTAATAATATTAAAA
1 ATATA-AAATAATAATATTAAAA
* *
45996777 A-AT-ATATAATAATATAAAAAA
1 ATATAAAATAATAATAT-TAAAA
45996798 ATATAA
1 ATATAA
45996804 TATTGAAAAC
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
20 10 0.14
21 20 0.27
22 9 0.12
23 35 0.47
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (22 bp):
ATATAAAATAATAATATTAAAA
Found at i:45996732 original size:21 final size:22
Alignment explanation
Indices: 45996708--45996802 Score: 99
Period size: 20 Copynumber: 4.3 Consensus size: 22
45996698 ATAGTATTAG
45996708 AAATATACAATATAATATT-AA
1 AAATATACAATATAATATTAAA
45996729 AAATATAC-ATATAATAGTATAAA
1 AAATATACAATATAATA-T-TAAA
*
45996752 AAATATATAACTAATAATATTAAA
1 AAATATACAA-T-ATAATATTAAA
* *
45996776 AAATATA-TA-ATAATATAAAA
1 AAATATACAATATAATATTAAA
45996796 AAATATA
1 AAATATA
45996803 ATATTGAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
20 25 0.38
21 9 0.14
22 1 0.02
23 10 0.15
24 12 0.18
25 2 0.03
26 6 0.09
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (22 bp):
AAATATACAATATAATATTAAA
Found at i:45996742 original size:20 final size:20
Alignment explanation
Indices: 45996702--45996806 Score: 79
Period size: 21 Copynumber: 4.9 Consensus size: 20
45996692 GAAATAATAG
*
45996702 TATTAGAAATATACAATATAA
1 TATTAAAAATATAC-ATATAA
45996723 TATTAAAAATATACATATAA
1 TATTAAAAATATACATATAA
*
45996743 TAGTATAAAAAATATATAACTAATAA
1 TA-T-T-AAAAATATA-CA-T-ATAA
*
45996769 TATTAAAAA-ATATATAATAA
1 TATTAAAAATATACAT-ATAA
*
45996789 TATAAAAAAATATA-ATAT
1 TAT-TAAAAATATACATAT
45996807 TGAAAACATA
Statistics
Matches: 72, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
20 19 0.26
21 22 0.31
22 7 0.10
23 14 0.19
24 2 0.03
25 2 0.03
26 6 0.08
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (20 bp):
TATTAAAAATATACATATAA
Found at i:45996760 original size:46 final size:42
Alignment explanation
Indices: 45996708--45996803 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 42
45996698 ATAGTATTAG
*
45996708 AAATATACAAT-ATAATATTAAAAATATACATATAATAGTATAAAA
1 AAATATA-AATAATAATATTAAAAA-AT--ATATAATAATATAAAA
*
45996753 AATATATAACTAATAATATTAAAAAATATATAATAATATAAAA
1 AA-ATATAAATAATAATATTAAAAAATATATAATAATATAAAA
45996796 AAATATAA
1 AAATATAA
45996804 TATTGAAAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
42 6 0.13
43 17 0.36
45 6 0.13
46 18 0.38
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (42 bp):
AAATATAAATAATAATATTAAAAAATATATAATAATATAAAA
Found at i:45996819 original size:18 final size:16
Alignment explanation
Indices: 45996717--45996820 Score: 61
Period size: 18 Copynumber: 6.3 Consensus size: 16
45996707 GAAATATACA
45996717 ATATAATATTAAAAAT
1 ATATAATATTAAAAAT
* * *
45996733 ATA-CATA-TAATAGT
1 ATATAATATTAAAAAT
* * * *
45996747 ATAAAAAATATATAACT
1 ATATAATAT-TAAAAAT
45996764 A-ATAATATTAAAAAAT
1 ATATAATATT-AAAAAT
*
45996780 ATATAATAATATAAAAAA
1 ATATAAT-AT-TAAAAAT
45996798 ATATAATATTGAAAACAT
1 ATATAATATT-AAAA-AT
45996816 ATATA
1 ATATA
45996821 CATAACATAC
Statistics
Matches: 65, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
14 8 0.12
15 6 0.09
16 14 0.22
17 16 0.25
18 20 0.31
19 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (16 bp):
ATATAATATTAAAAAT
Found at i:45997044 original size:3 final size:3
Alignment explanation
Indices: 45997036--45997193 Score: 71
Period size: 3 Copynumber: 52.7 Consensus size: 3
45997026 ACACTAGTAT
*
45997036 TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TAA TTAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA TAA TAA
* * * ** * *
45997082 TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA TGAA
1 TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* *
45997128 -AA TAA TAC TAA CAA TAA TAA TAA -AGA TAA TAA TAGA -AA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA
** *
45997171 TAA TTG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
45997194 TGTAAAAAAT
Statistics
Matches: 115, Mismatches: 24, Indels: 32
0.67 0.14 0.19
Matches are distributed among these distances:
2 13 0.11
3 90 0.78
4 11 0.10
5 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:45998948 original size:13 final size:13
Alignment explanation
Indices: 45998930--45998963 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
45998920 TGACTATTTA
*
45998930 AAAAATAGACATT
1 AAAAATAGAAATT
45998943 AAAAATAGAAATT
1 AAAAATAGAAATT
*
45998956 GAAAATAG
1 AAAAATAG
45998964 CTCAGCGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (13 bp):
AAAAATAGAAATT
Found at i:45999071 original size:87 final size:87
Alignment explanation
Indices: 45998949--45999107 Score: 221
Period size: 87 Copynumber: 1.8 Consensus size: 87
45998939 CATTAAAAAT
* * *
45998949 AGAAATTGAAAATAGCTCAGCGTGTGAGCCAAGGCTCAACTCACTTCTCGCAATTTGAGTTGGTT
1 AGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
45999014 TTTGAAACTTAATTTGAAAAGC
66 TTCGAAACTTAATTTGAAAAGC
* * * * *
45999036 AGAATTTGAAAATACCTC-GACTTGTGATCCGAGGCTCCACTCACTTCTCGCAATATGAGTTGAT
1 AGAAATTGAAAATACCTCAG-CGTGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
45999100 TTTCGAAA
65 TTTCGAAA
45999108 ATGGAGATCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
86 1 0.02
87 61 0.98
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (87 bp):
AGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
TTCGAAACTTAATTTGAAAAGC
Found at i:45999216 original size:75 final size:75
Alignment explanation
Indices: 45999026--46000030 Score: 719
Period size: 74 Copynumber: 13.2 Consensus size: 75
45999016 TGAAACTTAA
* * * * *
45999026 TTTGAAA-AGCAGAATTTGAAAATACCTCGACTTGTGATCC-GAGGCTCCACTCACTTCTCGCAA
1 TTTGAAAGA-CAGAAATTGAAATTACCTCAAC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAA
45999089 TATGAGTTGA--TT
62 TATGAGTTGATTTT
* ** * ** *
45999101 TTCGAAA-ATGGAGATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
45999165 AGTTGATTAT
66 AGTTGATTTT
* * *
45999175 TTTGAAAGACAGAAATTGAAATTACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999240 AGTTGA-TTT
66 AGTTGATTTT
* * * * * * * *
45999249 TTTGAAAGACAGGAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTGTAGTATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999314 AGTTGAATTTT
66 AGTTG-ATTTT
* *
45999325 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999390 AGTTGATTTT
66 AGTTGATTTT
* * * * * *
45999400 TTTGAAAGACAGAAACTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACTTCTTGCAGTATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999465 AGTTGAATTTTTTT
66 AGTTG-A---TTTT
* * * * * *
45999479 TTTGAAAGACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCACTTCTTGTAGTATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999544 A---G-----
66 AGTTGATTTT
* ** * * * **
45999546 -TTG-AATACAGAAATAAAAATTATCTCAGCATGTCCCAAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999609 AGTTGATTTTTTT
66 AGTTGA---TTTT
* * * *
45999622 TTTGAAAGATAGAAATTGAAATTAGCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
45999687 ATTTGATTTA
66 AGTTGATTTT
**** * * *
45999697 AAAAAACAGACATAAAAATAGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAACTCAC
1 TTTGAA-AGAC--------AGAAATTGAAA-TTACCTC-A-ACGTG-TCCTGAGGCTCAACTCAC
45999760 CTCTCGCAATATGAGTTGATTTT
53 CTCTCGCAATATGAGTTGATTTT
* * * ** * * * * * *
45999783 TTTGAAAG-TAGAATTTGAAAATACCTCGGCATGCCCCGAGGCTCAACTCACCTCCCGTAACATG
1 TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
45999847 AGTTGA-TTT
66 AGTTGATTTT
* * * * * * *
45999856 TTTGACAA-ACA-ACATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAAAA
1 TTTGA-AAGACAGA-AATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
45999919 TGAGTTGATTTAAAAA
64 TGAGTTGATTT----T
* * * * * * *
45999935 ATAGACATAAAAACCGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAACTCACCTCTC
1 TTTG----AAAGACAGAAATTGAAA-TTACCTC-A-ACGTG-TCCTGAGGCTCAACTCACCTCTC
45999998 GCAATATGAGTTGATTTT
58 GCAATATGAGTTGATTTT
46000016 TTTGAAA-ACAGAAAT
1 TTTGAAAGACAGAAAT
46000031 GAGATATCCA
Statistics
Matches: 751, Mismatches: 123, Indels: 111
0.76 0.12 0.11
Matches are distributed among these distances:
65 47 0.06
66 3 0.00
68 1 0.00
71 3 0.00
72 34 0.05
73 11 0.01
74 172 0.23
75 141 0.19
76 92 0.12
77 6 0.01
78 56 0.07
79 66 0.09
81 2 0.00
82 2 0.00
83 13 0.02
84 16 0.02
85 42 0.06
86 42 0.06
87 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (75 bp):
TTTGAAAGACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTT
Found at i:45999383 original size:225 final size:214
Alignment explanation
Indices: 45999117--45999695 Score: 755
Period size: 225 Copynumber: 2.6 Consensus size: 214
45999107 AATGGAGATC
*
45999117 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAAA
1 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
*
45999182 GACAGAAATTGAAATTACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 GACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
45999247 TTTTTGAAAGACAGGAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTGTAGTA
131 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTGTAGTA
*
45999312 TGAGTTGAATTTTTTTGAAAGACAGAAATTG
196 TGAGTTGAA------T-----ACAGAAA-TA
* *
45999343 AAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
1 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
* * * * * * * *
45999407 GACAGAAACTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACTTCTTGCAGTATGAGTTGAA
66 GACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A
* * *
45999472 TTTTTTTTTTGAAAGACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCACTTCTTG
130 ----TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTG
45999537 TAGTATGAGTTGAATACAGAAATA
191 TAGTATGAGTTGAATACAGAAATA
* * **
45999561 AAAATTATCTCAGCATGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
1 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTG
* * *
45999626 AAAGATAGAAATTGAAATTAGCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTT
63 AAAGACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
45999691 GATTT
128 GATTT
45999696 AAAAAAACAG
Statistics
Matches: 310, Mismatches: 34, Indels: 27
0.84 0.09 0.07
Matches are distributed among these distances:
217 3 0.01
218 5 0.02
219 50 0.16
221 1 0.00
222 63 0.20
224 1 0.00
225 111 0.36
226 5 0.02
230 71 0.23
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (214 bp):
AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
GACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTGTAGTA
TGAGTTGAATACAGAAATA
Found at i:45999665 original size:297 final size:293
Alignment explanation
Indices: 45999026--45999695 Score: 730
Period size: 297 Copynumber: 2.3 Consensus size: 293
45999016 TGAAACTTAA
* * * *
45999026 TTTGAAA-AGCAGAATTTGAAAATACCTCGACTTGTGATCC-GAGGCTCCACTCACTTCTCGCAA
1 TTTGAAAGA-CAGAAATTGAAAATACCTCAAC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAA
** * * *
45999089 TATGAGTTGA--TTTTCGAAAATGGAGATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
62 TATGAGTTGATTTTTTCGAAAACAGAAATCAAAATTACCTCAACGTGTCCTAAGGCTCAACTCAC
*
45999152 CTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTTAGCGTGTCTTGAGG
127 CTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTTAACGTGTCTTGAGG
* * *
45999217 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGGAATTGAAAATACCTCAACGT
192 CTCAACTCACCTCTCGCAATATGA--TG----TTTGAAAGACAGGAAATAAAAATACCTCAACAT
** * * * *
45999282 GTCTTAAGGCTCAACTCACTTCTTGTAGTATGAGTTGAATTTT
251 GTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
*
45999325 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
45999390 AGTTGATTTTTTTGAAAGACAGAAACTGAAAA-TACCTCAACGTGTCCTAAGGCTCAACTCACTT
66 AGTTGATTTTTTCGAAA-ACAGAAA-TCAAAATTACCTCAACGTGTCCTAAGGCTCAACTCACCT
* * *
45999454 CTTGCAGTATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTGAAATTA-CTTCAACGTGTCTTG
129 CTCGCAATATGAGTTG-A---TTATTTTGAAAGACAGAAATTGAAATTACCTT-AACGTGTCTTG
* * * * * * *
45999518 AGGCTCAACTCACTTCTTGTAGTATGA-G-TTG-AATACA-GAAATAAAAATTATCTCAGCATGT
189 AGGCTCAACTCACCTCTCGCAATATGATGTTTGAAAGACAGGAAATAAAAA-TACCTCAACATGT
*
45999579 CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
253 CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTT
* * * * *
45999622 TTTGAAAGATAGAAATTGAAATTAGCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
45999687 ATTTGATTT
66 AGTTGATTT
45999696 AAAAAAACAG
Statistics
Matches: 316, Mismatches: 41, Indels: 30
0.82 0.11 0.08
Matches are distributed among these distances:
294 8 0.03
295 45 0.14
296 5 0.02
297 105 0.33
299 35 0.11
300 48 0.15
301 7 0.02
303 3 0.01
304 60 0.19
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (293 bp):
TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTCGAAAACAGAAATCAAAATTACCTCAACGTGTCCTAAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTTAACGTGTCTTGAGGCTCA
ACTCACCTCTCGCAATATGATGTTTGAAAGACAGGAAATAAAAATACCTCAACATGTCCCAAGGC
TCAACTCACCTCTCGCAATATGAGTTGAATTTT
Found at i:45999687 original size:143 final size:144
Alignment explanation
Indices: 45999432--45999692 Score: 391
Period size: 143 Copynumber: 1.8 Consensus size: 144
45999422 TACCTCAACG
* * * *
45999432 TGTCCTAAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTG
1 TGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTG
* * * * *
45999497 AAATTACTTCAACGTGTCTTGAGGCTCAACTCACTTCTTGTAGTATGAGTTGAATACAGAAATAA
66 AAATTACTTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATACAGAAATAA
45999562 AAATTATCTCAGCA
131 AAATTATCTCAGCA
*
45999576 TGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTTTTGAAAGATAGAAATTG
1 TGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTG
* *
45999640 AAATTAGCTT-AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGA
66 AAATTA-CTTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
45999693 TTTAAAAAAA
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
143 67 0.64
144 37 0.36
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (144 bp):
TGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTG
AAATTACTTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATACAGAAATAA
AAATTATCTCAGCA
Found at i:46001173 original size:30 final size:30
Alignment explanation
Indices: 46001137--46001197 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
46001127 TTCTCTTGGC
46001137 CGTACCTTCTTATCATGAGCGGCGATCATT
1 CGTACCTTCTTATCATGAGCGGCGATCATT
46001167 CGTACCTTCTTATCATGAGCGGCGATCATT
1 CGTACCTTCTTATCATGAGCGGCGATCATT
46001197 C
1 C
46001198 TCTTCTGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (30 bp):
CGTACCTTCTTATCATGAGCGGCGATCATT
Found at i:46004459 original size:26 final size:26
Alignment explanation
Indices: 46004430--46004537 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
46004420 TGATACAAAT
46004430 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
46004456 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
46004482 TAATAATGGGTTATGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46004508 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46004534 TGAT
1 TGAT
46004538 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46006334 original size:13 final size:12
Alignment explanation
Indices: 46006314--46006376 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 12
46006304 AAACCAAATT
46006314 TTTCAAAAGCAC
1 TTTCAAAAGCAC
* *
46006326 TTCTTAAAAGTAC
1 TT-TCAAAAGCAC
* *
46006339 ATTTCCACAGCAC
1 -TTTCAAAAGCAC
46006352 TTCTCAAAAGCAC
1 TT-TCAAAAGCAC
46006365 TTTTCAAAAGCA
1 -TTTCAAAAGCA
46006377 TTGCCAAACT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
12 4 0.10
13 31 0.79
14 4 0.10
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (12 bp):
TTTCAAAAGCAC
Found at i:46006376 original size:26 final size:26
Alignment explanation
Indices: 46006313--46006376 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
46006303 TAAACCAAAT
* *
46006313 TTTTCAAAAGCACTTCTTAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* * *
46006339 ATTTCCACAGCACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
46006365 TTTTCAAAAGCA
1 TTTTCAAAAGCA
46006377 TTGCCAAACT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:46017516 original size:24 final size:23
Alignment explanation
Indices: 46017489--46017549 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
46017479 ATATAGCATT
46017489 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
46017513 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
46017537 TAAGAAATATATA
1 TAA-AAATATATA
46017550 TAATTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:46017701 original size:21 final size:22
Alignment explanation
Indices: 46017676--46017778 Score: 106
Period size: 21 Copynumber: 4.8 Consensus size: 22
46017666 ACACATATAT
*
46017676 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAGAA
46017697 ATATACAAT-ATAATATTAGAA
1 ATATACAATAATAATATTAGAA
* * *
46017718 ATATACATATAATAGTATAAAAA
1 ATATACA-ATAATAATATTAGAA
*
46017741 ATATATAACTAATAATATTA-AA
1 ATATACAA-TAATAATATTAGAA
*
46017763 ATATA-TATAATAATAT
1 ATATACAATAATAATAT
46017779 ATAAAAAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
20 9 0.13
21 24 0.34
22 13 0.19
23 24 0.34
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATACAATAATAATATTAGAA
Found at i:46017701 original size:23 final size:23
Alignment explanation
Indices: 46017674--46017790 Score: 107
Period size: 23 Copynumber: 5.2 Consensus size: 23
46017664 ACACACATAT
* *
46017674 ATATATAAATAATAGTATTAGAA
1 ATATATAAATAATAATATTAAAA
* *
46017697 ATATA-CAAT-ATAATATTAGAA
1 ATATATAAATAATAATATTAAAA
* * * *
46017718 ATATACATATAATAGTATAAAAA
1 ATATATAAATAATAATATTAAAA
*
46017741 ATATATAACTAATAATATT-AAA
1 ATATATAAATAATAATATTAAAA
*
46017763 ATATATATAATAAT-ATATAAAAA
1 ATATATA-AATAATAATATTAAAA
46017786 ATATA
1 ATATA
46017791 ATATTGAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
21 16 0.21
22 19 0.25
23 41 0.54
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATATAAATAATAATATTAAAA
Found at i:46017772 original size:43 final size:42
Alignment explanation
Indices: 46017676--46017794 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 42
46017666 ACACATATAT
* * * *
46017676 ATATAAATAATAGTATTAGAAATATACAATATAATATTAGAA
1 ATATATATAATAGTATAAAAAATATATAATATAATATTAGAA
46017718 ATATACATATAATAGTATAAAAAATATATAACTAATAATATTA-AA
1 ATAT--ATATAATAGTATAAAAAATATATAA-T-ATAATATTAGAA
*
46017763 ATATATATAATAATATATAAAAA-ATATAATAT
1 ATATATATAATAGTATA-AAAAATATATAATAT
46017795 TGAAAACATA
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.03
42 5 0.07
43 18 0.27
44 26 0.39
45 7 0.10
46 9 0.13
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (42 bp):
ATATATATAATAGTATAAAAAATATATAATATAATATTAGAA
Found at i:46018017 original size:17 final size:16
Alignment explanation
Indices: 46017991--46018022 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
46017981 CTATATATAA
46017991 ATATATATACATACAT
1 ATATATATACATACAT
46018007 ATATAATATACATACA
1 ATAT-ATATACATACA
46018023 CTAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:46018073 original size:16 final size:17
Alignment explanation
Indices: 46018052--46018083 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
46018042 TAAAACTAGA
46018052 AATAATAATA-GTTAGT
1 AATAATAATACGTTAGT
46018068 AATAATAATACGTTAG
1 AATAATAATACGTTAG
46018084 AAAACAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.03, G:0.12, T:0.34
Consensus pattern (17 bp):
AATAATAATACGTTAGT
Found at i:46018124 original size:15 final size:14
Alignment explanation
Indices: 46018100--46018175 Score: 84
Period size: 14 Copynumber: 5.4 Consensus size: 14
46018090 ATTAATATGT
46018100 TAATAAAATAATAG
1 TAATAAAATAATAG
*
46018114 TAATGAAAATAATAC
1 TAAT-AAAATAATAG
*
46018129 TAACAATAATAATA-
1 TAATAA-AATAATAG
*
46018143 -AAGAAAATAATAG
1 TAATAAAATAATAG
*
46018156 AAATAAAATAATAG
1 TAATAAAATAATAG
46018170 TAATAA
1 TAATAA
46018176 TATTAATAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
12 7 0.13
13 4 0.08
14 23 0.43
15 19 0.36
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.25
Consensus pattern (14 bp):
TAATAAAATAATAG
Found at i:46018127 original size:3 final size:3
Alignment explanation
Indices: 46018100--46018186 Score: 58
Period size: 3 Copynumber: 29.7 Consensus size: 3
46018090 ATTAATATGT
* * *
46018100 TAA TAA -AA TAA TAG TAA TGAA -AA TAA TAC TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
46018144 -AGA AAA TAA TAGA -AA TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
46018187 TGTAAAAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
2 8 0.12
3 53 0.82
4 4 0.06
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:46018206 original size:44 final size:41
Alignment explanation
Indices: 46018104--46018184 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
46018094 ATATGTTAAT
*
46018104 AAAATAATAGTAATGAAAATAATACTAACAATAATAATAAAG
1 AAAATAATAGAAAT-AAAATAATACTAACAATAATAATAAAG
* * *
46018146 AAAATAATAGAAATAAAATAATAGTAATAATATTAATAA
1 AAAATAATAGAAATAAAATAATACTAACAATAATAATAA
46018185 TATGTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
41 22 0.63
42 13 0.37
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.26
Consensus pattern (41 bp):
AAAATAATAGAAATAAAATAATACTAACAATAATAATAAAG
Found at i:46021201 original size:27 final size:27
Alignment explanation
Indices: 46021169--46021346 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
46021159 ATATTGAGTC
* *
46021169 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
46021196 CACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46021223 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
46021251 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46021278 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
46021305 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
46021332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46021347 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46021329 original size:54 final size:55
Alignment explanation
Indices: 46021169--46021346 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
46021159 ATATTGAGTC
* * * * * * *
46021169 CGCACACTCAGTGCTATATAATC-AACTCACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
46021223 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
46021278 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
46021332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46021347 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
54 60 0.58
55 44 0.42
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:46026310 original size:3 final size:3
Alignment explanation
Indices: 46026302--46026338 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
46026292 AAGGTAAGTG
*
46026302 ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
46026339 CAAGAAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:46026456 original size:11 final size:11
Alignment explanation
Indices: 46026440--46026477 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
46026430 GAATAGATGA
46026440 TAATAAAATAG
1 TAATAAAATAG
*
46026451 TAATAATATA-
1 TAATAAAATAG
46026461 TAATAAAATAG
1 TAATAAAATAG
46026472 TAATAA
1 TAATAA
46026478 TAATGCAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (11 bp):
TAATAAAATAG
Found at i:46026463 original size:21 final size:21
Alignment explanation
Indices: 46026439--46026479 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
46026429 TGAATAGATG
46026439 ATAATAAAATAGTAATAATAT
1 ATAATAAAATAGTAATAATAT
46026460 ATAATAAAATAGTAATAATA
1 ATAATAAAATAGTAATAATA
46026480 ATGCAGGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
ATAATAAAATAGTAATAATAT
Found at i:46026574 original size:4 final size:4
Alignment explanation
Indices: 46026565--46026691 Score: 71
Period size: 4 Copynumber: 31.8 Consensus size: 4
46026555 ACAAGGATTA
* * * * *
46026565 AAAT AAAT AAAT AAAT AAAT AAAC AAGT GAAT AAA- ATAT AAAT AGAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * ** * *
46026612 AAGT AAAT GAAC AAGC AAAT GAAT GAAAT AAA- AGGAAT -AAT GAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A--AAT AAAT AAAT AAAT
* * *
46026661 AAAC AAGT AAAT AAAT AAAT GAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
46026692 AGAATTAAAA
Statistics
Matches: 90, Mismatches: 27, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
3 6 0.07
4 79 0.88
5 5 0.06
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:46026650 original size:53 final size:47
Alignment explanation
Indices: 46026568--46026703 Score: 112
Period size: 53 Copynumber: 2.7 Consensus size: 47
46026558 AGGATTAAAA
* * * ** * *
46026568 TAAATAAATAAATAAATAAACAAGTGAATAAAATATAAATAGATAAG
1 TAAATAAACAAATGAATAAATAAAAGAATAAAATATAAATAAACAAG
*
46026615 TAAATGAACAAGCAAATGAATGAAATAAAAGGAATAATGA-ATAAATAAACAAG
1 TAAAT--A-AA-CAAATGAAT-AAATAAAA-GAATAA-AATATAAATAAACAAG
*
46026668 TAAATAAATAAATGAATAAATAAAAGAATTAAAATA
1 TAAATAAACAAATGAATAAATAAAAGAA-TAAAATA
46026704 AAAAGGGTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
47 9 0.13
48 12 0.17
49 9 0.13
50 4 0.06
51 8 0.11
52 5 0.07
53 22 0.31
54 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.10, T:0.21
Consensus pattern (47 bp):
TAAATAAACAAATGAATAAATAAAAGAATAAAATATAAATAAACAAG
Found at i:46033705 original size:15 final size:14
Alignment explanation
Indices: 46033679--46033719 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 14
46033669 AAATTTAGTC
46033679 TTTATATTTTAATTT
1 TTTAT-TTTTAATTT
46033694 TATTATTTTTAATTT
1 T-TTATTTTTAATTT
46033709 TTGTATTTTTA
1 TT-TATTTTTA
46033720 GAATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.04
15 19 0.79
16 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (14 bp):
TTTATTTTTAATTT
Found at i:46037196 original size:21 final size:22
Alignment explanation
Indices: 46037165--46037206 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
46037155 TAATCATAAA
*
46037165 AATCAACAATTTAAATCTATTT
1 AATCAACAATTCAAATCTATTT
*
46037187 AATCAA-AATTCAAATTTATT
1 AATCAACAATTCAAATCTATT
46037207 CGACCCAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (22 bp):
AATCAACAATTCAAATCTATTT
Found at i:46047746 original size:3 final size:3
Alignment explanation
Indices: 46047740--46047780 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
46047730 ACATCTTCAT
* *
46047740 TTC TTC -TC TTC TTT TTC TTT TTC -TC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
46047781 ACTACCTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:46047765 original size:17 final size:17
Alignment explanation
Indices: 46047740--46047780 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
46047730 ACATCTTCAT
*
46047740 TTCTTCTCTTCTTTTTC
1 TTCTTCTCTTCTTCTTC
*
46047757 TTTTTCTCTTCTTCTTC
1 TTCTTCTCTTCTTCTTC
46047774 TTCTTCT
1 TTCTTCT
46047781 ACTACCTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCTTCTCTTCTTCTTC
Found at i:46048676 original size:6 final size:6
Alignment explanation
Indices: 46048665--46048844 Score: 149
Period size: 6 Copynumber: 29.8 Consensus size: 6
46048655 AACCAAAATG
*
46048665 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
* *
46048713 AGAATC AGAATC AGAATC AGTATG AGAATC AGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * * *
46048761 AGTAA-C AAAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATT
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * *
46048809 AGAATC AAAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
46048845 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 20, Indels: 30
0.74 0.11 0.16
Matches are distributed among these distances:
5 12 0.09
6 116 0.83
7 9 0.06
8 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:46048805 original size:30 final size:30
Alignment explanation
Indices: 46048688--46048844 Score: 175
Period size: 30 Copynumber: 5.4 Consensus size: 30
46048678 GAATCAGTAA
*
46048688 CAGAATCAGAATCAATATTAGTAACAGAAT
1 CAGAATCAGAATCAGTATTAGTAACAGAAT
46048718 CAGAATCAGAATCAGTA-T-G----AGAAT
1 CAGAATCAGAATCAGTATTAGTAACAGAAT
* * *
46048742 CAGTAA-CAGAATCAGAATCAGTAACAAAAT
1 CAG-AATCAGAATCAGTATTAGTAACAGAAT
46048772 CAGAATCAGAATCAGTATTAGTAACAGAAT
1 CAGAATCAGAATCAGTATTAGTAACAGAAT
* ** *
46048802 CAGAATTAGAATCAAAATTACGTGACAGAAT
1 CAGAATCAGAATCAGTATTA-GTAACAGAAT
46048833 CAGAATCAGAAT
1 CAGAATCAGAAT
46048845 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
24 18 0.17
25 2 0.02
26 1 0.01
28 1 0.01
29 3 0.03
30 61 0.58
31 20 0.19
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (30 bp):
CAGAATCAGAATCAGTATTAGTAACAGAAT
Found at i:46048999 original size:27 final size:26
Alignment explanation
Indices: 46048962--46049027 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
46048952 AGCATGGCTG
*
46048962 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
46048988 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
46049015 CCAGAATCAGATA
1 CCAGAA-CAGATA
46049028 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:46049032 original size:27 final size:27
Alignment explanation
Indices: 46048962--46049035 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
46048952 AGCATGGCTG
* *
46048962 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
46048988 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
46049015 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
46049036 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:46049042 original size:27 final size:27
Alignment explanation
Indices: 46048986--46049043 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
46048976 GTGACAGAGT
* * *
46048986 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
46049013 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
46049040 CACC
1 CACC
46049044 TAACAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:46049248 original size:22 final size:22
Alignment explanation
Indices: 46049200--46049258 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46049190 GTAAATACGT
*
46049200 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
46049222 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
46049244 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
46049259 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:46049425 original size:27 final size:26
Alignment explanation
Indices: 46049346--46049428 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
46049336 TCGATCGGTC
* * *
46049346 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
46049372 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
46049399 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
46049426 AAC
1 AAC
46049429 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:46049657 original size:27 final size:27
Alignment explanation
Indices: 46049627--46049822 Score: 205
Period size: 27 Copynumber: 7.3 Consensus size: 27
46049617 GGGGCAAAAT
* * *
46049627 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
46049654 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
46049681 GATATTTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
46049708 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46049735 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
46049762 CATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46049789 AG-ACATTCTACCCTACAGGGGTATTTC
1 GGTA-ATTCTACCCTACAAGGGTATTTC
*
46049816 AGTAATT
1 GGTAATT
46049823 TCACAATCAA
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:46049771 original size:81 final size:82
Alignment explanation
Indices: 46049629--46049822 Score: 239
Period size: 81 Copynumber: 2.4 Consensus size: 82
46049619 GGCAAAATGG
* * * * * * *
46049629 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCCATAATTCTACCC
46049694 TACAAGAGTATTTC-GA
66 TACAAGAGTATTTCAGA
* * *
46049710 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCCATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCCATAATTCTACCC
* * *
46049775 TATAGGGGTATTTCAGA
66 TACAAGAGTATTTCAGA
* *
46049792 -CATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
46049823 TCACAATCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 94 0.98
82 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCCATAATTCTACCC
TACAAGAGTATTTCAGA
Found at i:46049857 original size:27 final size:27
Alignment explanation
Indices: 46049827--46050319 Score: 577
Period size: 27 Copynumber: 18.3 Consensus size: 27
46049817 GTAATTTCAC
* *
46049827 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
46049854 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
46049881 AA-CTGAGAGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
46049908 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
46049935 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
46049962 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
46049989 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
46050016 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
46050043 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
46050070 AATCGAGAGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
46050097 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
46050124 AA-CAGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
46050151 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * * *
46050178 AATTAAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
46050205 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
46050232 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
46050259 AA-CTGAGGGTAAAACGGTAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
46050286 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
46050313 AATCGAG
1 AATCGAG
46050320 AGTACTTTGG
Statistics
Matches: 400, Mismatches: 56, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 390 0.98
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:46052175 original size:18 final size:17
Alignment explanation
Indices: 46052147--46052180 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46052137 GACCTTAGCC
46052147 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
46052164 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
46052181 CCAAAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:46052198 original size:6 final size:6
Alignment explanation
Indices: 46052168--46052375 Score: 178
Period size: 6 Copynumber: 34.3 Consensus size: 6
46052158 AAGAAACATT
* * * *
46052168 ATCAGA ATTAGA ACCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-A
*
46052217 A-CAGA ATCAGA ATCAGA ATCA-A TATTAGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA -ATCAG-A ATCAGA ATCAGA ATCAGA
* *
46052264 ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAG-A ATCAGA ATCAGA
* * * * *
46052313 ATCAGT ATTAGTA A-CAGA ATCAGA ATTAGA ATCAGA ATTACGTG A-CAGA
1 ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
46052362 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
46052376 GTGAATGCAA
Statistics
Matches: 162, Mismatches: 24, Indels: 32
0.74 0.11 0.15
Matches are distributed among these distances:
5 11 0.07
6 138 0.85
7 10 0.06
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:46052327 original size:79 final size:79
Alignment explanation
Indices: 46052200--46052375 Score: 293
Period size: 79 Copynumber: 2.2 Consensus size: 79
46052190 GAATCAGAAT
46052200 CAGAATCAGAATCAGTAA-CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGA
1 CAGAATCAGAATCAG-AATCAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGA
*
46052264 ATCAGAATTAGGTGA
65 ATCAGAATTACGTGA
* *
46052279 CAGAATCAGAATCAGAATCAGTAA-CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATTAGA
1 CAGAATCAGAATCAGAATCAG-AATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGA
46052343 ATCAGAATTACGTGA
65 ATCAGAATTACGTGA
46052358 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
46052376 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
78 2 0.02
79 88 0.96
80 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (79 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
TCAGAATTACGTGA
Found at i:46052563 original size:27 final size:27
Alignment explanation
Indices: 46052493--46052566 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
46052483 AGCATAGTTG
* *
46052493 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
46052519 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATAATGTGGCAGAGCCA
46052546 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
46052567 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 7 0.17
27 32 0.80
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:46052573 original size:27 final size:27
Alignment explanation
Indices: 46052517--46052574 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
46052507 GTGACAGAGT
* * *
46052517 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATATAGATAATGTGGCAAACC
46052544 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATAT-AGATAATGTGGCAAACC
46052571 CACC
1 CACC
46052575 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATATAGATAATGTGGCAAACC
Found at i:46052956 original size:27 final size:26
Alignment explanation
Indices: 46052877--46052959 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
46052867 TCGATCGGTC
* * *
46052877 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
46052903 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
46052930 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
46052957 AAC
1 AAC
46052960 GCCTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:46053188 original size:27 final size:27
Alignment explanation
Indices: 46053158--46053353 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
46053148 GGGGCAAAAT
* * *
46053158 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46053185 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46053212 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
46053239 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46053266 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * * *
46053293 AATAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
46053320 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
46053347 AGTAATT
1 GGTAATT
46053354 TCACAATCAA
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:46053260 original size:54 final size:54
Alignment explanation
Indices: 46053158--46053346 Score: 243
Period size: 54 Copynumber: 3.5 Consensus size: 54
46053148 GGGGCAAAAT
* * * * *
46053158 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
46053212 GGTATTTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * * *
46053266 GGTAATTCTATCCTATAAGGGTATTTCAATAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
46053320 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
46053347 AGTAATTTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 115 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:46053397 original size:27 final size:27
Alignment explanation
Indices: 46053365--46053931 Score: 704
Period size: 27 Copynumber: 21.0 Consensus size: 27
46053355 CACAATCAAT
* *
46053365 GGTAAAATGGTAATTCTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
46053392 GGTAAAACGATAATTTTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * *
46053419 AGT-AAACTAGTAATTCTGTAAATCAAG
1 GGTAAAAC-GGTAATTCTGTAAATCGAG
* **
46053446 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
46053473 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
46053500 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
46053527 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
46053554 GGTAAAACGGTAATTTTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
46053581 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
46053608 GGTAAAACAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
46053635 GGTAAAACAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* *
46053662 GGTAAAATGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
46053689 GGTAAAATAGTAATTCTGTAAAAT-GAG
1 GGTAAAACGGTAATTCTGT-AAATCGAG
*
46053716 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
46053743 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
46053770 GGTAAAACGATAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
46053797 GGTAAAATAGTAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
46053824 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
46053851 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * **
46053878 GGTAAAATGGTAATTTTAAAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
46053905 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
46053932 AGTACTTTGG
Statistics
Matches: 476, Mismatches: 48, Indels: 32
0.86 0.09 0.06
Matches are distributed among these distances:
26 13 0.03
27 449 0.94
28 14 0.03
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:46053459 original size:81 final size:81
Alignment explanation
Indices: 46053365--46053931 Score: 786
Period size: 81 Copynumber: 7.0 Consensus size: 81
46053355 CACAATCAAT
* * * * *
46053365 GGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGATAATTTTGTAAACTGAGAGT-AAACTAG
1 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAAC-GG
*
46053429 TAATTCTGTAAATCAAG
65 TAATTCTGTAAATCGAG
* *
46053446 GGTAAAACGGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACG
1 GGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACG
46053509 GTAATTCTGTAAATCGAG
64 GTAATTCTGTAAATCGAG
46053527 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGT
1 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGT
46053592 AATTCTGTAAATCGAG
66 AATTCTGTAAATCGAG
* * * *
46053608 GGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGT
1 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGT
*
46053673 AATTTTGTAAATCGAG
66 AATTCTGTAAATCGAG
** *
46053689 GGTAAAATAGTAATTCTGTAAAATGAGGGTAAAACGGTAATTTTGTAAA-TCGAGGGTAAAACGG
1 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAACGG
* **
46053753 TAATTTTACAAATCGAG
65 TAATTCTGTAAATCGAG
* * ** * *
46053770 GGTAAAACGATAATTCTATAAA-TCGAGGGTAAAATAGTAATTCTATAAACTGAGGGTAAAACGG
1 GGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGG
46053834 TAATTCTGTAAATCGAG
65 TAATTCTGTAAATCGAG
* * *
46053851 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTTT-AAAAATCGAGGGTAAAACGG
1 GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAACGG
46053915 TAATTCTGTAAATCGAG
65 TAATTCTGTAAATCGAG
46053932 AGTACTTTGG
Statistics
Matches: 438, Mismatches: 38, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.00
80 10 0.02
81 414 0.95
82 10 0.02
83 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGT
AATTCTGTAAATCGAG
Found at i:46055169 original size:21 final size:21
Alignment explanation
Indices: 46055141--46055180 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
46055131 AAGCATTTGG
46055141 GAGCAAAATGAG-CAAAAAAC
1 GAGCAAAATGAGACAAAAAAC
*
46055161 GAGCTAAAATTAGACAAAAA
1 GAGC-AAAATGAGACAAAAA
46055181 GAGCTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.10
Consensus pattern (21 bp):
GAGCAAAATGAGACAAAAAAC
Found at i:46061530 original size:2 final size:2
Alignment explanation
Indices: 46061525--46061550 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
46061515 AACTGATATC
46061525 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
46061551 TGTATTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:46061652 original size:20 final size:21
Alignment explanation
Indices: 46061629--46061675 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
46061619 TGATTTTTAT
46061629 TTTTTTTAATATT-TTTCTG-A
1 TTTTTTTAATATTCTTT-TGTA
*
46061649 TTTTTTTGATATTCTTTTGTA
1 TTTTTTTAATATTCTTTTGTA
46061670 TTTTTT
1 TTTTTT
46061676 ATTCTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.74
Consensus pattern (21 bp):
TTTTTTTAATATTCTTTTGTA
Found at i:46061666 original size:11 final size:10
Alignment explanation
Indices: 46061630--46061675 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
46061620 GATTTTTATT
*
46061630 TTTTTTAATA
1 TTTTTTGATA
46061640 TTTTTCTGAT-
1 TTTTT-TGATA
46061650 TTTTTTGATA
1 TTTTTTGATA
46061660 TTCTTTTG-TA
1 TT-TTTTGATA
46061670 TTTTTT
1 TTTTTT
46061676 ATTCTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
9 8 0.25
10 16 0.50
11 8 0.25
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (10 bp):
TTTTTTGATA
Found at i:46065240 original size:42 final size:42
Alignment explanation
Indices: 46065175--46065264 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
46065165 ATCCTAATTG
* *
46065175 AGAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAA
1 AGAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAA
* *
46065217 AGAAAATAGTTCCCTTGTCCTAATAAAGTACTAAAAGATAAA
1 AGAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAA
*
46065259 ATAAAA
1 AGAAAA
46065265 ATATTCCTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (42 bp):
AGAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAA
Found at i:46065311 original size:19 final size:18
Alignment explanation
Indices: 46065289--46065328 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
46065279 TGAATAAAAC
46065289 TTATATACCTAAATAAGAT
1 TTATATACCTAAATAA-AT
*
46065308 TTATCTACCTAAATAAAT
1 TTATATACCTAAATAAAT
46065326 TTA
1 TTA
46065329 AAATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATATACCTAAATAAAT
Found at i:46069119 original size:42 final size:42
Alignment explanation
Indices: 46069055--46069143 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
46069045 TCCTAATTGG
* * *
46069055 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAACAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
46069097 GAAAACAGTTCCCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAACAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
46069139 TAAAA
1 GAAAA
46069144 ATATTCCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.27
Consensus pattern (42 bp):
GAAAACAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:46069190 original size:19 final size:18
Alignment explanation
Indices: 46069168--46069207 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
46069158 TGAATAAAAC
*
46069168 TTATCTACTTAAATAAGAT
1 TTATCTACCTAAATAA-AT
46069187 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
46069205 TTA
1 TTA
46069208 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:46073934 original size:3 final size:3
Alignment explanation
Indices: 46073926--46073951 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
46073916 TAGAACTAAA
46073926 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
46073952 ACTTTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:46075113 original size:31 final size:31
Alignment explanation
Indices: 46075053--46075113 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
46075043 GTGTAATTAT
46075053 ATATATATATATAAAACTTAAATTGTGATTC
1 ATATATATATATAAAACTTAAATTGTGATTC
* * * * *
46075084 ATATGTATATATGAAATTTTAATTTTGATT
1 ATATATATATATAAAACTTAAATTGTGATT
46075114 ACTTTTTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (31 bp):
ATATATATATATAAAACTTAAATTGTGATTC
Found at i:46075683 original size:18 final size:18
Alignment explanation
Indices: 46075657--46075691 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
46075647 GAGTTAAACG
46075657 AATCAAGTTATTCGAGTT
1 AATCAAGTTATTCGAGTT
*
46075675 AATCGAGTTATTCGAGT
1 AATCAAGTTATTCGAGT
46075692 CAACACGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37
Consensus pattern (18 bp):
AATCAAGTTATTCGAGTT
Found at i:46075882 original size:26 final size:27
Alignment explanation
Indices: 46075827--46075884 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 27
46075817 ACTTTTCCTT
*
46075827 CAAAACTTTTATTCCTTCCCACTTTCTCC
1 CAAAACTTTTA-T-CTTCCCACTTCCTCC
46075856 CAAAACTTTTA-CTTCCC-CTTCCATCC
1 CAAAACTTTTATCTTCCCACTTCC-TCC
46075882 CAA
1 CAA
46075885 CCCCCCAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 4 0.15
26 12 0.44
29 11 0.41
ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36
Consensus pattern (27 bp):
CAAAACTTTTATCTTCCCACTTCCTCC
Found at i:46078515 original size:49 final size:49
Alignment explanation
Indices: 46078442--46078543 Score: 161
Period size: 49 Copynumber: 2.1 Consensus size: 49
46078432 TACTCGATGC
* * *
46078442 CATAGTCATATATCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCA
1 CATAGTCACATATCGACGCCATAGCCCAGCTATGGTCTTACACG-AATCA
46078492 CATA-TCACATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCA
1 CATAGTCACATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCA
46078540 CATA
1 CATA
46078544 CCTCACTGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
48 9 0.18
49 36 0.73
50 4 0.08
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (49 bp):
CATAGTCACATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCA
Found at i:46078688 original size:31 final size:31
Alignment explanation
Indices: 46078645--46078793 Score: 190
Period size: 31 Copynumber: 4.8 Consensus size: 31
46078635 CTTGTCACTT
* *
46078645 GTAGTCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
46078676 GTAGCCGGAGCTACCATTTTTTACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
46078707 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** * *
46078738 GTAGAAGAAGCTACCGCTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
46078769 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
46078794 TGTCATTTGT
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:46078875 original size:50 final size:51
Alignment explanation
Indices: 46078769--46078897 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
46078759 CACTGATCAA
* * * * *
46078769 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTAATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTAATCAGATAAGT
* *
46078820 GTAGCCGAAGCTATTACTTATCACTT-TCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTAATCAGATAAGT
*
46078870 GTAGCCGAAGCTATCGCTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
46078898 TGCCATGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 44 0.65
51 24 0.35
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTAATCAGATAAGT
Found at i:46083865 original size:19 final size:19
Alignment explanation
Indices: 46083841--46083878 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
46083831 GAAATGAATA
*
46083841 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
46083860 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
46083879 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:46084803 original size:19 final size:20
Alignment explanation
Indices: 46084770--46084809 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
46084760 ATATATGTAT
46084770 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
46084789 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
46084809 A
1 A
46084810 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:46085447 original size:44 final size:44
Alignment explanation
Indices: 46085387--46085663 Score: 409
Period size: 44 Copynumber: 6.4 Consensus size: 44
46085377 CCCCGTCTAA
* *
46085387 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
46085431 TACAGAGACGCTAAATCTGTTATCTTCGATCTGCTCTCCACCGT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
46085475 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
46085515 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
46085559 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
46085603 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
46085647 TATAGAGATGCCAAATC
1 TACAGAGACGCCAAATC
46085664 ATCTTGGATT
Statistics
Matches: 213, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 36 0.17
44 177 0.83
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:46085616 original size:128 final size:129
Alignment explanation
Indices: 46085361--46085663 Score: 412
Period size: 128 Copynumber: 2.3 Consensus size: 129
46085351 GCGATATCTG
* *** *
46085361 CTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTTC
1 CTATCTTCGATCTGCTCCCCG-CCGCTACAGAGACGCCAAATCCGCTATCTTCGATCTGCTCTTC
* * * *
46085426 GCCGCTACAGAGACGCTAAATCTGTTATCTTCGATCTGCTCTCCACCGTTACAGAGATGCCAAAT
65 GCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAAT
* * *
46085491 C-ATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTC-TCT
1 CTATCTTCGATCTGCTCCCCGCCGCTACAGAGACGCCAAATCCGCTATCTTCGATCTGCTCTTC-
*
46085554 GCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAAT
65 GCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAAT
* *
46085619 CTGTTATCTTCGATCTGCTCCCCGCCGCTATAGAGATGCCAAATC
1 C---TATCTTCGATCTGCTCCCCGCCGCTACAGAGACGCCAAATC
46085664 ATCTTGGATT
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
127 2 0.01
128 96 0.64
129 16 0.11
130 1 0.01
132 36 0.24
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (129 bp):
CTATCTTCGATCTGCTCCCCGCCGCTACAGAGACGCCAAATCCGCTATCTTCGATCTGCTCTTCG
CCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAAT
Found at i:46085745 original size:88 final size:88
Alignment explanation
Indices: 46085625--46085848 Score: 369
Period size: 88 Copynumber: 2.6 Consensus size: 88
46085615 AAATCTGTTA
* * * *
46085625 TCTTCGATCTGCTCCCCGCC-GCTATAGAGATGCCAAATCATCTTGGATTTGCTTCAATGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
46085689 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
* *
46085712 TCTTCGATCTGCTCCCTGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTTAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
*
46085777 ACGTGAAAGCCAAATTAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
46085800 TCTTCGATCTACTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGAT
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGAT
46085849 ATCTTCAGCT
Statistics
Matches: 127, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
87 19 0.15
88 108 0.85
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:46085764 original size:172 final size:171
Alignment explanation
Indices: 46085360--46085765 Score: 482
Period size: 172 Copynumber: 2.4 Consensus size: 171
46085350 GGCGATATCT
* * * * *
46085360 GCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTT
1 GCTATCTTCGATCTGCTCCCTGCCTGATACAGAGACGCCAAATCC--TATCTTCGATCTGCTCTC
* * *
46085425 CGCCGCTACAGAGACGCTAAATCTGTTATCTTCGATCTGCTCTCCACCGTTACAGAGATGCCAAA
64 CGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCACCGCTACAGAGATGCCAAA
*** * *
46085490 TCATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
129 TCATCTTCGATCTGCTCTCTGAAACTACAGAGAAGCCAAATCA
* *
46085533 GCTATCTTCGATCTGCTCTCTGCC-GCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTC
1 GCTATCTTCGATCTGCTCCCTGCCTGATACAGAGACGCCAAATC--CTATCTTCGATCTGCTCTC
* *
46085597 CGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCGCTATAGAGATGCCAAA
64 CGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCACCGCTACAGAGATGCCAAA
* * *
46085662 TCATCTTGGATTTGCT-TCAATGTAAAC-AC-GTGAAAGCCAAATCA
129 TCATCTTCGATCTGCTCTC--TG-AAACTACAGAG-AAGCCAAATCA
* *
46085706 GCTATGTCTTCGATCTGCTCCCTGCCTGATACAGAGATGCCAAAT-C-ATCTTGGATCTGCT
1 GCTA--TCTTCGATCTGCTCCCTGCCTGATACAGAGACGCCAAATCCTATCTTCGATCTGCT
46085766 TTAACGTAAA
Statistics
Matches: 200, Mismatches: 24, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
171 2 0.01
172 123 0.62
173 38 0.19
174 2 0.01
175 19 0.09
176 16 0.08
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (171 bp):
GCTATCTTCGATCTGCTCCCTGCCTGATACAGAGACGCCAAATCCTATCTTCGATCTGCTCTCCG
CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCACCGCTACAGAGATGCCAAATC
ATCTTCGATCTGCTCTCTGAAACTACAGAGAAGCCAAATCA
Found at i:46086056 original size:61 final size:64
Alignment explanation
Indices: 46085944--46086068 Score: 204
Period size: 61 Copynumber: 2.0 Consensus size: 64
46085934 TCATGTATCC
46085944 ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
*
46086008 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
46086069 TTATTATATG
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
61 32 0.54
62 1 0.02
63 1 0.02
64 5 0.08
65 20 0.34
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Done.