Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 141 of 295
Found at i:47926425 original size:44 final size:44
Alignment explanation
Indices: 47926362--47926454 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
47926352 CAAAATAAAT
47926362 GCTCTTTGATTGCCATGAGTTTCGAACGCTGGACCTCCTTGCCA
1 GCTCTTTGATTGCCATGAGTTTCGAACGCTGGACCTCCTTGCCA
*
47926406 GCTCTTTGATTGCCATGAGTTTCGAACGCTGGACCTCTTTGCCA
1 GCTCTTTGATTGCCATGAGTTTCGAACGCTGGACCTCCTTGCCA
47926450 GCTCT
1 GCTCT
47926455 ATGACGCCAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.15, C:0.29, G:0.23, T:0.33
Consensus pattern (44 bp):
GCTCTTTGATTGCCATGAGTTTCGAACGCTGGACCTCCTTGCCA
Found at i:47927030 original size:22 final size:22
Alignment explanation
Indices: 47926999--47927040 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
47926989 GAAGCATTCA
*
47926999 GTATAGTTTGATTTATATTTCG
1 GTATAATTTGATTTATATTTCG
47927021 GTATAATTTGATTTATATTT
1 GTATAATTTGATTTATATTT
47927041 TTGAATATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.57
Consensus pattern (22 bp):
GTATAATTTGATTTATATTTCG
Found at i:47930173 original size:21 final size:21
Alignment explanation
Indices: 47930122--47930165 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
47930112 TATAAATTAT
47930122 AACCCATAATTATATTTGTAC
1 AACCCATAATTATATTTGTAC
47930143 AACCCATAATTATATTTGTAC
1 AACCCATAATTATATTTGTAC
47930164 AA
1 AA
47930166 GTTTTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (21 bp):
AACCCATAATTATATTTGTAC
Found at i:47930806 original size:50 final size:49
Alignment explanation
Indices: 47930650--47930814 Score: 172
Period size: 50 Copynumber: 3.3 Consensus size: 49
47930640 AGTAACCTAA
* * * * *
47930650 ACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAATAGCCTGC
1 ACTTAGTACTACACATGCTACCAACTATTTGGTACACATAGTAGCCTGC
* * * * *
47930699 ACTTAGTACTACACACG-TGATCGAAGT-TGTCAGGTACGCATAGTAGCCTGC
1 ACTTAGTACTACACATGCT-A-CCAACTAT-T-TGGTACACATAGTAGCCTGC
*
47930750 ATTTAGTACTACACATGCTACCTAACTATTTGGTACACATAGTAGCCTGC
1 ACTTAGTACTACACATGCTACC-AACTATTTGGTACACATAGTAGCCTGC
47930800 ACTTAGTACTACACA
1 ACTTAGTACTACACA
47930815 CACGACCTAA
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
49 18 0.20
50 36 0.39
51 36 0.39
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (49 bp):
ACTTAGTACTACACATGCTACCAACTATTTGGTACACATAGTAGCCTGC
Found at i:47930823 original size:50 final size:51
Alignment explanation
Indices: 47930650--47930865 Score: 190
Period size: 51 Copynumber: 4.3 Consensus size: 51
47930640 AGTAACCTAA
* * * *
47930650 ACTTAGTACTACACATGCGACC-AACAATC-TGGTACACGTAATAGCCTGC
1 ACTTAGTACTACACACGCGACCTAACTATCTTGGTACACATAGTAGCCTGC
* * * * * * *
47930699 ACTTAGTACTACACACGTGATCGAAGT-TGTCAGGTACGCATAGTAGCCTGC
1 ACTTAGTACTACACACGCGACCTAACTATCT-TGGTACACATAGTAGCCTGC
* * *
47930750 ATTTAGTACTACACATGCTACCTAACTAT-TTGGTACACATAGTAGCCTGC
1 ACTTAGTACTACACACGCGACCTAACTATCTTGGTACACATAGTAGCCTGC
* * ** *
47930800 ACTTAGTACTACACACACGACCTAAAATCATCTT-AAACACATAGTAGCCTAC
1 ACTTAGTACTACACACGCGACCT-AACT-ATCTTGGTACACATAGTAGCCTGC
*
47930852 ACATAGTACTACAC
1 ACTTAGTACTACAC
47930866 GTGTTCTCAC
Statistics
Matches: 132, Mismatches: 28, Indels: 11
0.77 0.16 0.06
Matches are distributed among these distances:
49 20 0.15
50 39 0.30
51 40 0.30
52 31 0.23
53 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (51 bp):
ACTTAGTACTACACACGCGACCTAACTATCTTGGTACACATAGTAGCCTGC
Found at i:47930846 original size:52 final size:50
Alignment explanation
Indices: 47930737--47930865 Score: 143
Period size: 50 Copynumber: 2.5 Consensus size: 50
47930727 GTCAGGTACG
* ** * * **
47930737 CATAGTAGCCTGCATTTAGTACTACACATGCTACCTAACTATTTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAAATATTTGAAACA
47930787 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAAAATCATCTT-AAACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCT-AAAT-AT-TTGAAACA
* *
47930839 CATAGTAGCCTACACATAGTACTACAC
1 CATAGTAGCCTGCACTTAGTACTACAC
47930866 GTGTTCTCAC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 32 0.48
51 3 0.04
52 30 0.45
53 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACACGACCTAAATATTTGAAACA
Found at i:47933852 original size:24 final size:24
Alignment explanation
Indices: 47933820--47933867 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
47933810 TTGTCCACAC
*
47933820 GGGCGGTGTCCCAACCGTGTGTGA
1 GGGCGGTGTCCCAACCATGTGTGA
*
47933844 GGGCGGTGTCTCAACCATGTGTGA
1 GGGCGGTGTCCCAACCATGTGTGA
47933868 CACACGGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.23
Consensus pattern (24 bp):
GGGCGGTGTCCCAACCATGTGTGA
Found at i:47936850 original size:68 final size:68
Alignment explanation
Indices: 47936701--47936858 Score: 153
Period size: 68 Copynumber: 2.3 Consensus size: 68
47936691 CTAGCCGATT
* * * *
47936701 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
47936766 TTTA
65 TATA
* * *
47936770 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
47936832 CTATATA
63 C-ATATA
47936839 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
47936859 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 8 0.11
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ATA
Found at i:47947496 original size:92 final size:94
Alignment explanation
Indices: 47947350--47947519 Score: 226
Period size: 92 Copynumber: 1.8 Consensus size: 94
47947340 TATGAGATCC
47947350 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAATGTAAGA-CATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAATGTAAGACCATGTCT
*
47947414 GGGACAT-GCATCGACTACGAGATATGTT
66 AGGACATGGCATCGACTACGAGATATGTT
* * *
47947442 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATG-GA-G-GTG-TCAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAT-TGAGACGAGAGCT-AATGTAAGACCAT
47947503 GTCTAGGACATGGCATC
62 GTCTAGGACATGGCATC
47947520 AGCACAAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
91 1 0.01
92 40 0.59
93 15 0.22
94 10 0.15
95 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAATGTAAGACCATGTCT
AGGACATGGCATCGACTACGAGATATGTT
Found at i:47947561 original size:49 final size:47
Alignment explanation
Indices: 47947303--47947663 Score: 218
Period size: 49 Copynumber: 7.6 Consensus size: 47
47947293 ATTTGTGTGG
*
47947303 TAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCACATTAT-G-AGATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACA-TATGGAAG-TC
* *
47947349 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAT-TGAGACGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATG-GA--AG-TC
* *
47947397 TAATGTAAGA-CATGTCTGGGACAT-GCATC-G-AC-TACGAGATATGT-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATG-GA-A-GTC
* * * *
47947441 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATGGAGGTG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATGGAAGTC
*
47947488 TCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAAATATGTGAAG-C
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC--ATATG-GAAGTC
** * * * *
47947538 TAGTGTAAGACCATACCTGGGACATGGCGTCAGCCTCAGTTTTGATAGTC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACA-TATGGA-AGTC
* * * *
47947588 -AGTGTAAGACAATGTTTGGGACGTGGCATC-G-ACTTGATGGATGAG-C
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAT-ATGGA--AGTC
* *
47947634 CAATGTAAGACCATGTCTGGGACATGGCAT
1 TAGTGTAAGACCATGTCTGGGACATGGCAT
47947664 TGGAATTATA
Statistics
Matches: 251, Mismatches: 38, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.00
44 10 0.04
45 21 0.08
46 34 0.14
47 57 0.23
48 58 0.23
49 59 0.24
50 8 0.03
51 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATGGAAGTC
Found at i:47951243 original size:9 final size:9
Alignment explanation
Indices: 47951231--47951263 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
47951221 ATAACTTAAA
*
47951231 TAAAAAATT
1 TAAATAATT
47951240 TAAATAATT
1 TAAATAATT
47951249 T-AATAATT
1 TAAATAATT
47951257 TAAATAA
1 TAAATAA
47951264 AAATTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
TAAATAATT
Found at i:47951253 original size:30 final size:31
Alignment explanation
Indices: 47951219--47951287 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
47951209 ATTAACAATC
47951219 TAATAACTTAAATAAAAAAT-TTAAATAATT
1 TAATAACTTAAATAAAAAATCTTAAATAATT
* * *
47951249 TAATAATTTAAATAAAAATTCTTAAATAGTT
1 TAATAACTTAAATAAAAAATCTTAAATAATT
*
47951280 GAATAACT
1 TAATAACT
47951288 ATTTTATTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
30 18 0.55
31 15 0.45
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (31 bp):
TAATAACTTAAATAAAAAATCTTAAATAATT
Found at i:47959092 original size:53 final size:53
Alignment explanation
Indices: 47958937--47959086 Score: 169
Period size: 53 Copynumber: 2.8 Consensus size: 53
47958927 AGCAGTTATG
* * * *
47958937 TAGGAATCAAATTGTTAAAATATAACATTCCATAATAATATCTTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAA-ATAATA-TCCATAATAATATC-TATAACATCCCAC
* *
47958993 TAGGAATTAAATTGCTAAGAGATAAT-T-CATAATAATATCTTATAACATCCCAC
1 TAGGAATCAAATTGCTAA-AAATAATATCCATAATAATATC-TATAACATCCCAC
*
47959046 TAGGAATCAAATTGCTAAAAAAAATATCCCATAATAATATC
1 TAGGAATCAAATTGCTAAAAATAATAT-CCATAATAATATC
47959087 CTAACACCCC
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
52 5 0.06
53 42 0.52
54 1 0.01
55 12 0.15
56 20 0.25
57 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (53 bp):
TAGGAATCAAATTGCTAAAAATAATATCCATAATAATATCTATAACATCCCAC
Found at i:47960462 original size:16 final size:16
Alignment explanation
Indices: 47960441--47960491 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
47960431 GTTTGGTTCA
47960441 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
47960457 CTGTAATTGG-ATAGAG
1 CTGTAA-TGGAATAGAG
*
47960473 CTATAATGGAATAGAG
1 CTGTAATGGAATAGAG
47960489 CTG
1 CTG
47960492 CAATCAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 3 0.10
16 25 0.81
17 3 0.10
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:47960679 original size:25 final size:26
Alignment explanation
Indices: 47960650--47960700 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
47960640 ATGATTATTG
*
47960650 TTATTGTT-ATTAAATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
*
47960675 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
47960701 ATAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
TTATTGTTAAATAAATTTTAATAAAA
Found at i:47960735 original size:58 final size:57
Alignment explanation
Indices: 47960663--47960797 Score: 162
Period size: 58 Copynumber: 2.3 Consensus size: 57
47960653 TTGTTATTAA
* * *
47960663 ATTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAAATAATTTAATCAT
1 ATTTTAACAAAATTATTATTAAATATAATTTAAT-AAAATAAAAAATAATTTAATCAT
* * * * *
47960721 ATTTTAACACAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAC
1 ATTTTAACAAAATTATTATTAAATATAATTTAATAAAATAAAAAATAATTTAATCAT
* *
47960778 ATTCTTAATATAATTATTAT
1 ATT-TTAACAAAATTATTAT
47960798 CATATGAATT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
57 22 0.33
58 44 0.67
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (57 bp):
ATTTTAACAAAATTATTATTAAATATAATTTAATAAAATAAAAAATAATTTAATCAT
Found at i:47965892 original size:46 final size:46
Alignment explanation
Indices: 47965735--47966044 Score: 231
Period size: 46 Copynumber: 6.6 Consensus size: 46
47965725 TTATTTGTGT
* * *
47965735 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * *
47965781 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
* *
47965829 GCTAGTGTAAGATATGTCTGGGACATGCATCGACCTCGAGATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* *
47965875 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
* * * * *
47965920 TC-AGTGTAAGACCATGTCTAGGACATGGCATC-GACACGAATATGTAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGATG--AGA
* * * ** *
47965969 GTTAGTGTAAGAC-TAGTCTGGGACATGCTGTCGGCTTCGATTTCGATA
1 GCTAGTGTAAGACAT-GTCTGGGACATGC-ATCGGCCTCGAGAT-GAGA
47966017 G-TCAGTGTAAGACCATGTCTGGGACATG
1 GCT-AGTGTAAGA-CATGTCTGGGACATG
47966045 GCATTGGCAT
Statistics
Matches: 211, Mismatches: 32, Indels: 39
0.75 0.11 0.14
Matches are distributed among these distances:
44 9 0.04
45 18 0.09
46 72 0.34
47 28 0.13
48 40 0.19
49 30 0.14
50 14 0.07
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:47965975 original size:140 final size:140
Alignment explanation
Indices: 47965735--47965996 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 140
47965725 TTATTTGTGT
* **
47965735 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCTAGTGTAAGACCATGTC
* * * *
47965800 TGGGACATGGCATTGGCATTGAGACGAGAGCTAGTGTAAGA-TATGTCTGGGACATGCATCGACC
66 TAGGACATGGCATCGACATCGAGACGAGAGCTAGTGTAAGACTA-GTCTGGGACATGCATCGACC
47965864 TCGAGATGCAA
130 TCGAGATGCAA
* * *
47965875 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTG-TC-AGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCTAGTGTAAGACCATGTC
* * *
47965938 TAGGACATGGCATCGACA-CGAATATGTAAGAGTTAGTGTAAGACTAGTCTGGGACATGC
66 TAGGACATGGCATCGACATCG-AGACG--AGAGCTAGTGTAAGACTAGTCTGGGACATGC
47965997 TGTCGGCTTC
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
137 1 0.01
138 34 0.32
139 1 0.01
140 67 0.64
141 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCTAGTGTAAGACCATGTC
TAGGACATGGCATCGACATCGAGACGAGAGCTAGTGTAAGACTAGTCTGGGACATGCATCGACCT
CGAGATGCAA
Found at i:47972474 original size:46 final size:46
Alignment explanation
Indices: 47972405--47972600 Score: 150
Period size: 46 Copynumber: 4.2 Consensus size: 46
47972395 TAAGACCACC
* * * *
47972405 GGGACATTGCATCGGCATTGAGATAG-GAGCTAGTGTAAGACATGTCT
1 GGGACA-TGCATCGACATCGAGAT-GTAAGCCAGTGTAAGACATGTCT
* *
47972452 GGGACATGCATCGACCTCGAGATGTAAGCCAGTGTAAGACATGTTT
1 GGGACATGCATCGACATCGAGATGTAAGCCAGTGTAAGACATGTCT
* * *
47972498 GGGACATGCATTGGCTAT-GAGATGT--GTCAGTGTAAGACCATGTCT
1 GGGACATGCATCGAC-ATCGAGATGTAAGCCAGTGTAAGA-CATGTCT
* * * * *
47972543 GGGACATGACATCGGCA-CAGATATGTGTGAGCTAATGTAAGATCATGTCT
1 GGGACATG-CATCGACATC-GAGA--TGTAAGCCAGTGTAAGA-CATGTCT
47972593 GGGACATG
1 GGGACATG
47972601 ACGTCGGCCT
Statistics
Matches: 122, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.09
45 16 0.13
46 61 0.50
47 7 0.06
48 3 0.02
50 24 0.20
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (46 bp):
GGGACATGCATCGACATCGAGATGTAAGCCAGTGTAAGACATGTCT
Found at i:47991799 original size:25 final size:25
Alignment explanation
Indices: 47991766--47991814 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
47991756 ATGTGAAAGG
*
47991766 GGGTTGCTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
47991791 GGGTTGCTAAGTGCTGATTCCCCG
1 GGGTTGCTAAGTGCTGATTCCCCG
47991815 TTCATTGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47991898 original size:25 final size:25
Alignment explanation
Indices: 47991864--47991912 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
47991854 GAAATGAAAA
*
47991864 GGGGTTGCTATGTGCTGATTCCCCC
1 GGGGTTGCTAAGTGCTGATTCCCCC
47991889 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
47991913 GATTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.10, C:0.27, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGGTTGCTAAGTGCTGATTCCCCC
Found at i:47991941 original size:100 final size:100
Alignment explanation
Indices: 47991688--47992046 Score: 548
Period size: 100 Copynumber: 3.6 Consensus size: 100
47991678 GTATATAAAA
** * * *
47991688 GGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
*
47991752 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
65 TGAAA--TGAAAAGGGGTTGCTATGTGCTGATTCCCCC
47991789 GAGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 G-GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
47991853 TGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCC
65 TGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCC
47991889 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTT
*
47991954 GAAA--AAAAGGGGGTTGCTATGTGCTGATTCCCCGA
66 GAAATGAAAA-GGGGTTGCTATGTGCTGATTCCCC-C
* *
47991989 GGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
47992047 ATAACGGTTA
Statistics
Matches: 243, Mismatches: 9, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
98 4 0.02
99 73 0.30
100 104 0.43
101 39 0.16
102 23 0.09
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (100 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:47991998 original size:26 final size:26
Alignment explanation
Indices: 47991963--47992014 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
47991953 TGAAAAAAAG
*
47991963 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47991989 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47992015 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47999446 original size:25 final size:25
Alignment explanation
Indices: 47999412--47999463 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
47999402 GAAATGTGAA
47999412 GAGGGTTGC-TATGTGC-TGATTCCCC
1 GAGGGTTGCTTA-GTGCATG-TTCCCC
47999437 GAGGGTTGCTTAGTGCATGTTCCCC
1 GAGGGTTGCTTAGTGCATGTTCCCC
47999462 GA
1 GA
47999464 TTTCATTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (25 bp):
GAGGGTTGCTTAGTGCATGTTCCCC
Found at i:47999547 original size:26 final size:26
Alignment explanation
Indices: 47999512--47999561 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
47999502 AAATTAAAAG
*
47999512 GGGGTTGCTATGTGCTGATTCCCCCA
1 GGGGTTGCTAAGTGCTGATTCCCCCA
47999538 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
47999562 GATTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCCA
Found at i:47999650 original size:102 final size:102
Alignment explanation
Indices: 47999338--47999697 Score: 461
Period size: 102 Copynumber: 3.6 Consensus size: 102
47999328 GTATATAAAA
** * * *
47999338 GGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTTT
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAGGTGCGAT-ATCCACCATATCTTT
***
47999402 GAAATGTGAAGAGGGTTGCTATGTGCTGATT-CCCCGA-
65 GAAATAAAAAG-GGGTTGCTATGTGCTGATTCCCCCGAG
*
47999439 GGGTTGCTTAGTGCATG-TTCCCCGATTTCATT-GT-GTGCTA-GTGCGATATCCACCATATCTT
1 GGGTTGCTAAGTGC-TGATTCCCCGA-TTCATTGGTGGTGCTAGGTGCGATATCCACCATATCTT
*
47999500 TGAAATTAAAAGGGGGTTGCTATGTGCTGATTCCCCC-AG
64 TGAAA-TAAAAAGGGGTTGCTATGTGCTGATTCCCCCGAG
47999539 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGGT-CGATATCCACCATATC-TT
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCT-AGGTGCGATATCCACCATATCTTT
47999602 GAAATAAAAAAGGGGTTGCTATGTGCTGATTCCCCCGAG
65 GAAAT-AAAAAGGGGTTGCTATGTGCTGATTCCCCCGAG
* * **
47999641 GGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAGGTGCGATATCCACCA
47999698 ATAACGGCTA
Statistics
Matches: 231, Mismatches: 14, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
99 52 0.23
100 38 0.16
101 65 0.28
102 74 0.32
103 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (102 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAGGTGCGATATCCACCATATCTTTG
AAATAAAAAGGGGTTGCTATGTGCTGATTCCCCCGAG
Found at i:47999654 original size:27 final size:27
Alignment explanation
Indices: 47999612--47999663 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
47999602 GAAATAAAAA
*
47999612 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
47999639 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
47999664 GATTCAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:48004432 original size:47 final size:46
Alignment explanation
Indices: 48004376--48004499 Score: 133
Period size: 47 Copynumber: 2.7 Consensus size: 46
48004366 TCTTGAGGCT
* *
48004376 GATGCATGTCCCAGACATGTCTTACACTAGATCTCGT-CTCAAAGAC
1 GATGCATGTCCCAGACATGTCTTACACTAGATCTCATAAT-AAAGAC
* * * *** *
48004422 GATGCCATGTCCCAAACATGGTTTTACACTAGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGATCTCATAATAAAGAC
48004470 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
48004500 CACACAAATA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 15 0.23
47 26 0.41
48 22 0.34
49 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGATCTCATAATAAAGAC
Found at i:48008860 original size:170 final size:170
Alignment explanation
Indices: 48008578--48008918 Score: 637
Period size: 170 Copynumber: 2.0 Consensus size: 170
48008568 GTACATCAAA
48008578 GTTTCAAACATTCCAAGTTGAGCATTTTATCACGAAAACATAGGTGTCTCCCCTCATCTAAGTGA
1 GTTTCAAACATTCCAAGTTGAGCATTTTATCACGAAAACATAGGTGTCTCCCCTCATCTAAGTGA
*
48008643 TTACCTTTGATCAAAATATCACATAGTTTAACATCCTCAATAAAGATTCACTCAAATCAGTCAAG
66 TTACCTTTGATCAAAATATCACATAGTTCAACATCCTCAATAAAGATTCACTCAAATCAGTCAAG
*
48008708 GTGTTTAAGAACATCAATAAACGCACTCATTAGTGAATAT
131 GTGTTTAAGAACATCAATAAAAGCACTCATTAGTGAATAT
48008748 GTTTCAAACATTCCAAGTTGAGCATTTTATCACGAAAACATAGGTGTCTCCCCTCATCTAAGTGA
1 GTTTCAAACATTCCAAGTTGAGCATTTTATCACGAAAACATAGGTGTCTCCCCTCATCTAAGTGA
*
48008813 TTACCTTTGATCAAAATATCACATAGTTCAACATCCTCAGTAAAGATTCACTCAAATCAGTCAAG
66 TTACCTTTGATCAAAATATCACATAGTTCAACATCCTCAATAAAGATTCACTCAAATCAGTCAAG
* *
48008878 GTGTTTAAGAACATCAATAAAAGTACTCATTAGTTAATAT
131 GTGTTTAAGAACATCAATAAAAGCACTCATTAGTGAATAT
48008918 G
1 G
48008919 AAAAGTTATT
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
170 166 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (170 bp):
GTTTCAAACATTCCAAGTTGAGCATTTTATCACGAAAACATAGGTGTCTCCCCTCATCTAAGTGA
TTACCTTTGATCAAAATATCACATAGTTCAACATCCTCAATAAAGATTCACTCAAATCAGTCAAG
GTGTTTAAGAACATCAATAAAAGCACTCATTAGTGAATAT
Found at i:48013519 original size:43 final size:43
Alignment explanation
Indices: 48013470--48013554 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
48013460 GTGCAAAAAG
48013470 AAGGGCTGATCCCTTTAATGTCAGAAATTTTCCAAGCAATGGA
1 AAGGGCTGATCCCTTTAATGTCAGAAATTTTCCAAGCAATGGA
* *
48013513 AAGGGCTGATCCCTTTAATGTTAGAAATTTTCCAAGCTATGG
1 AAGGGCTGATCCCTTTAATGTCAGAAATTTTCCAAGCAATGG
48013555 TCCTTTTATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (43 bp):
AAGGGCTGATCCCTTTAATGTCAGAAATTTTCCAAGCAATGGA
Found at i:48021792 original size:42 final size:42
Alignment explanation
Indices: 48021719--48021922 Score: 178
Period size: 42 Copynumber: 4.8 Consensus size: 42
48021709 AGGGTTACTA
* * * *
48021719 AGATTACGTGTAAGACCATATAC-AGGATATGGCATTTG-TATG
1 AGATTTCGTGTAAGACCATA-CCTGGGATATGGCA-TCGATATG
* * * *
48021761 AAACTTCGTGTAAGACCATACCTGGGTTATGGCATCGATGTG
1 AGATTTCGTGTAAGACCATACCTGGGATATGGCATCGATATG
*
48021803 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
1 AGATTTCGTGTAAGACCATACCTGGGATATGGCATCGATATG
* ** * * * * *
48021845 AGATTTCATGTAAGACCATAGTTAGGCTATTAGCGTCGATACG
1 AGATTTCGTGTAAGACCATACCTGGGATA-TGGCATCGATATG
* * * *
48021888 AGATTACATGTAAGACCATATCTAGGATATGGCAT
1 AGATTTCGTGTAAGACCATACCTGGGATATGGCAT
48021923 TGGTATGGTA
Statistics
Matches: 132, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.02
42 94 0.71
43 35 0.27
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATACCTGGGATATGGCATCGATATG
Found at i:48021860 original size:84 final size:84
Alignment explanation
Indices: 48021719--48021922 Score: 232
Period size: 84 Copynumber: 2.4 Consensus size: 84
48021709 AGGGTTACTA
* *
48021719 AGATTACGTGTAAGACCATATAC-AGGATATGGCATTTGTATGAAACTTCGTGTAAGACCATACC
1 AGATTACGTGTAAGACCATAT-CTAGGATATGGCA-TCGTATGAAACTTCATGTAAGACCATACC
* * * **
48021783 TGGGTTA-TGGCATCGATGTG
64 TAGGCTATTAGCATCGATACG
* * * * **
48021803 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTAAGACCATAGTT
1 AGATTACGTGTAAGACCATATCTAGGATATGGCATCG-TATGAAACTTCATGTAAGACCATACCT
*
48021868 AGGCTATTAGCGTCGATACG
65 AGGCTATTAGCATCGATACG
*
48021888 AGATTACATGTAAGACCATATCTAGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTAGGATATGGCAT
48021923 TGGTATGGTA
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
83 3 0.03
84 56 0.56
85 41 0.41
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (84 bp):
AGATTACGTGTAAGACCATATCTAGGATATGGCATCGTATGAAACTTCATGTAAGACCATACCTA
GGCTATTAGCATCGATACG
Found at i:48037405 original size:11 final size:11
Alignment explanation
Indices: 48037389--48037413 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48037379 TGGCCTGTAG
48037389 AATAGACTTGT
1 AATAGACTTGT
48037400 AATAGACTTGT
1 AATAGACTTGT
48037411 AAT
1 AAT
48037414 GGCATAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
AATAGACTTGT
Found at i:48050399 original size:10 final size:10
Alignment explanation
Indices: 48050386--48050414 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
48050376 AATTCCATTC
48050386 ATTAAATACT
1 ATTAAATACT
48050396 ATTAAATACT
1 ATTAAATACT
48050406 ATTAAATAC
1 ATTAAATAC
48050415 ATGAACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (10 bp):
ATTAAATACT
Found at i:48052864 original size:25 final size:25
Alignment explanation
Indices: 48052836--48052885 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
48052826 TAAATCATAA
48052836 ATATTAATTAATAATATTTACGGAT
1 ATATTAATTAATAATATTTACGGAT
*
48052861 ATATTAATTAATAATATTTATGGAT
1 ATATTAATTAATAATATTTACGGAT
48052886 TCACTCGTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (25 bp):
ATATTAATTAATAATATTTACGGAT
Found at i:48058539 original size:24 final size:24
Alignment explanation
Indices: 48058512--48058560 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
48058502 AACAACCACT
48058512 ATACGCTTCTTTTAAAATCTTCTA
1 ATACGCTTCTTTTAAAATCTTCTA
48058536 ATACGCTTCTTTTAAAATCTTCTA
1 ATACGCTTCTTTTAAAATCTTCTA
48058560 A
1 A
48058561 ATAAGCTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.45
Consensus pattern (24 bp):
ATACGCTTCTTTTAAAATCTTCTA
Found at i:48074084 original size:40 final size:40
Alignment explanation
Indices: 48073897--48074077 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
48073887 AATGATGTCC
* * * *
48073897 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC-
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCT
* * * * *
48073936 CGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCT
48073976 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
*
48074015 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCT
*
48074055 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
48074078 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 55 0.46
40 63 0.52
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
Found at i:48074099 original size:79 final size:79
Alignment explanation
Indices: 48073946--48074110 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
48073936 CGACTAAGAT
* **
48073946 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
48074011 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
48074025 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
48074088 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
48074104 CCGAAGG
1 CCGAAGG
48074111 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:48078697 original size:13 final size:13
Alignment explanation
Indices: 48078673--48078847 Score: 124
Period size: 13 Copynumber: 13.5 Consensus size: 13
48078663 CATATCTATC
*
48078673 CATATAAACATTT
1 CATATAATCATTT
*
48078686 CGTATAATCATTT
1 CATATAATCATTT
48078699 CATATAA-CTATTT
1 CATATAATC-ATTT
* *
48078712 CCATTTAATCAGTT
1 -CATATAATCATTT
48078726 CATATAATCATTT
1 CATATAATCATTT
* *
48078739 CATATACTTATTT
1 CATATAATCATTT
48078752 -ATATAA-CTATTT
1 CATATAATC-ATTT
* *
48078764 CATATAACCATAT
1 CATATAATCATTT
*
48078777 CATATTA-CTATTT
1 CATATAATC-ATTT
** * *
48078790 TGTGTAACCATTT
1 CATATAATCATTT
48078803 CATATAATCATTT
1 CATATAATCATTT
* ** *
48078816 CGTATAGCCATTA
1 CATATAATCATTT
*
48078829 CATATAACCATTT
1 CATATAATCATTT
48078842 CATATA
1 CATATA
48078848 TTATTTTCAT
Statistics
Matches: 125, Mismatches: 29, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
12 11 0.09
13 102 0.82
14 11 0.09
15 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.43
Consensus pattern (13 bp):
CATATAATCATTT
Found at i:48078738 original size:27 final size:26
Alignment explanation
Indices: 48078673--48078770 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 26
48078663 CATATCTATC
* *
48078673 CATATAAACATTT-CGTATAATCATTT
1 CATAT-AACATTTCCATATAATCAGTT
*
48078699 CATATAACTATTTCCATTTAATCAGTT
1 CATATAAC-ATTTCCATATAATCAGTT
* *
48078726 CATATAATCATTT-CATATACTTA-TT
1 CATATAA-CATTTCCATATAATCAGTT
*
48078751 TATATAACTATTT-CATATAA
1 CATATAAC-ATTTCCATATAA
48078771 CCATATCATA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
24 1 0.02
25 21 0.35
26 16 0.27
27 21 0.35
28 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (26 bp):
CATATAACATTTCCATATAATCAGTT
Found at i:48078952 original size:12 final size:12
Alignment explanation
Indices: 48078935--48078965 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
48078925 AAGTGTGCCC
48078935 GTAAATGTAACT
1 GTAAATGTAACT
*
48078947 GTAAATGTATCT
1 GTAAATGTAACT
48078959 GTAAATG
1 GTAAATG
48078966 CTTGTACAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (12 bp):
GTAAATGTAACT
Found at i:48083144 original size:28 final size:27
Alignment explanation
Indices: 48083107--48083211 Score: 131
Period size: 28 Copynumber: 3.8 Consensus size: 27
48083097 GTAATCAAAT
48083107 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGG-ACTTAGTGTACGAAATATTGAGA
48083135 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGG-ACTTAGTGTACGAAATATTGAGA
* *
48083163 AT-GACTTAGTGTGCGAGATATTGAGA
1 ATGGACTTAGTGTACGAAATATTGAGA
* * *
48083189 ATGAAACTTAGTGTGCAAAATAT
1 ATG-GACTTAGTGTACGAAATAT
48083212 CGAATGATTC
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.33
27 1 0.01
28 45 0.65
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (27 bp):
ATGGACTTAGTGTACGAAATATTGAGA
Found at i:48085236 original size:29 final size:29
Alignment explanation
Indices: 48085197--48085410 Score: 175
Period size: 29 Copynumber: 7.4 Consensus size: 29
48085187 TCATAATCGA
48085197 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* **** *
48085226 GCACTGTGTGTGCGAGTTTC-G-TAACCAA
1 GCACTGTGTGTGCGAG-ATCGGTTGTTGAG
48085254 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
48085283 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
48085311 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
48085340 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
48085368 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
48085397 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
48085411 AAATAAGATC
Statistics
Matches: 138, Mismatches: 40, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
27 2 0.01
28 61 0.44
29 66 0.48
30 2 0.01
31 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:48085236 original size:57 final size:57
Alignment explanation
Indices: 48085167--48085410 Score: 380
Period size: 57 Copynumber: 4.2 Consensus size: 57
48085157 AAGTGAACAT
* * * * *
48085167 AGGCACTGTGTGTGTGAGTTTCATAATCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
48085224 AGGCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
48085281 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
48085338 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
48085395 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
48085411 AAATAAGATC
Statistics
Matches: 174, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
57 167 0.96
59 7 0.04
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:48085266 original size:28 final size:28
Alignment explanation
Indices: 48085226--48085380 Score: 125
Period size: 28 Copynumber: 5.5 Consensus size: 28
48085216 GGTTGTTGAG
48085226 GCACTGTGTGTGCGAGTTTCGTAACCAA
1 GCACTGTGTGTGCGAGTTTCGTAACCAA
* **** *
48085254 GCACTGTGTGTGCGAG-ATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTTC-G-TAACCAA
* *
48085283 GCACTGTGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTTCGTAACCAA
* **** *
48085311 GCACTGTGTGTGCGAG-ATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGTTTC-G-TAACCAA
*
48085340 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTTCGTAACCAA
48085368 GCACTGTGTGTGC
1 GCACTGTGTGTGC
48085381 AAGATCGGTT
Statistics
Matches: 92, Mismatches: 29, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
27 3 0.03
28 50 0.54
29 37 0.40
30 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAACCAA
Found at i:48090376 original size:28 final size:27
Alignment explanation
Indices: 48090339--48090416 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
48090329 GCAATCAAAT
*
48090339 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGT-CGAAATATTGAGA
* *
48090367 ATGGCACTTAGTGTGGAGATATTGAGA
1 ATGGCACTTAGTGTCGAAATATTGAGA
* *
48090394 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGT-CGAAATAT
48090417 CGAATGATTC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 24 0.57
28 18 0.43
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.31
Consensus pattern (27 bp):
ATGGCACTTAGTGTCGAAATATTGAGA
Found at i:48090396 original size:27 final size:27
Alignment explanation
Indices: 48090339--48090408 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
48090329 GCAATCAAAT
* *
48090339 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGT-GGAAATATTGAGA
*
48090367 ATGGCACTTAGTGTGGAGATATTGAGA
1 ATGGCACTTAGTGTGGAAATATTGAGA
*
48090394 ATGACACTTAGTGTG
1 ATGGCACTTAGTGTG
48090409 CAAAATATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 25 0.66
28 13 0.34
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (27 bp):
ATGGCACTTAGTGTGGAAATATTGAGA
Found at i:48106516 original size:15 final size:16
Alignment explanation
Indices: 48106496--48106525 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
48106486 ATGGCCAAAT
48106496 CACATTAG-AACATAG
1 CACATTAGAAACATAG
48106511 CACATTAGAAACATA
1 CACATTAGAAACATA
48106526 CACCAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (16 bp):
CACATTAGAAACATAG
Found at i:48108243 original size:27 final size:27
Alignment explanation
Indices: 48108187--48108265 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
48108177 CATACTTCAC
* * * *
48108187 CTAAA-CACATCTATGAACATAGTTCT
1 CTAAACCACATCTATGAGCACAGCTCA
* *
48108213 CTAAACCATATCTGTGAGCACAGCTCA
1 CTAAACCACATCTATGAGCACAGCTCA
*
48108240 CTAAATCACATCTATGAGCACAGCTC
1 CTAAACCACATCTATGAGCACAGCTC
48108266 GCCAAGTGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.12
27 38 0.88
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.25
Consensus pattern (27 bp):
CTAAACCACATCTATGAGCACAGCTCA
Found at i:48108506 original size:7 final size:7
Alignment explanation
Indices: 48108496--48108585 Score: 72
Period size: 7 Copynumber: 12.3 Consensus size: 7
48108486 ACATTTCATA
48108496 TTTAGGG
1 TTTAGGG
* *
48108503 TTTAAGA
1 TTTAGGG
48108510 TTTAGGG
1 TTTAGGG
*
48108517 TTTAAGGT
1 TTT-AGGG
*
48108525 TTTATGGT
1 TTTA-GGG
*
48108533 TTTAAGGA
1 TTT-AGGG
*
48108541 TTTAGCG
1 TTTAGGG
48108548 TTTAGGG
1 TTTAGGG
*
48108555 TTTAAGG
1 TTTAGGG
*
48108562 TTTATGGT
1 TTTA-GGG
48108570 TTTAGGG
1 TTTAGGG
48108577 TTTAGGG
1 TTTAGGG
48108584 TT
1 TT
48108586 CTATGCATAA
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
7 43 0.65
8 22 0.33
9 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:48108550 original size:16 final size:15
Alignment explanation
Indices: 48108495--48108550 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
48108485 AACATTTCAT
*
48108495 ATTTAGGGTTTAA-G
1 ATTTAGGTTTTAAGG
*
48108509 ATTTAGGGTTTAAGG
1 ATTTAGGTTTTAAGG
*
48108524 TTTTATGGTTTTAAGG
1 ATTTA-GGTTTTAAGG
48108540 ATTTAGCGTTT
1 ATTTAG-GTTT
48108551 AGGGTTTAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 13 0.36
15 6 0.17
16 17 0.47
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (15 bp):
ATTTAGGTTTTAAGG
Found at i:48110617 original size:45 final size:45
Alignment explanation
Indices: 48110539--48110629 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
48110529 GCTATCATCT
*
48110539 TTAACTCACTAGGACTTCTAGCATACATCAGCTCACCAAGCTTTC
1 TTAACTCACCAGGACTTCTAGCATACATCAGCTCACCAAGCTTTC
* *
48110584 TTAATTCACCAGGACTTCTAG-AGTACATTAGCTCACCAAGCTTTC
1 TTAACTCACCAGGACTTCTAGCA-TACATCAGCTCACCAAGCTTTC
48110629 T
1 T
48110630 AGTGAACCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (45 bp):
TTAACTCACCAGGACTTCTAGCATACATCAGCTCACCAAGCTTTC
Found at i:48120573 original size:43 final size:43
Alignment explanation
Indices: 48120497--48120617 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
48120487 ATAGGATTTA
* * * *
48120497 CGATATGTGATTGCGTTTAAGACCATTTTTGGGACA-TCAACAT
1 CGATATGTGATTACGTGTAAGACCATGTCTGGGACAGT-AACAT
* **
48120540 CGTATATGTGATT-CGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CG-ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTAACAT
* * *
48120583 CGATATGTGATTACATGTAAGACCACGTCTAGGAC
1 CGATATGTGATTACGTGTAAGACCATGTCTGGGAC
48120618 GTTGGCATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 10 0.15
43 44 0.68
44 11 0.17
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCATGTCTGGGACAGTAACAT
Found at i:48122430 original size:16 final size:17
Alignment explanation
Indices: 48122409--48122441 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
48122399 TATGTATATT
*
48122409 TTTAAATGTGT-TTATA
1 TTTAAAAGTGTATTATA
48122425 TTTAAAAGTGTATTATA
1 TTTAAAAGTGTATTATA
48122442 CCTGACTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
TTTAAAAGTGTATTATA
Found at i:48125564 original size:14 final size:13
Alignment explanation
Indices: 48125524--48125583 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 13
48125514 TTAATTAAAC
48125524 TAATTAAATTAAT
1 TAATTAAATTAAT
* *
48125537 TATCTTAAAATAAT
1 TA-ATTAAATTAAT
48125551 CTAATTAAATTAAT
1 -TAATTAAATTAAT
*
48125565 TAATCTAAAATAACT
1 TAAT-TAAATTAA-T
48125580 TAAT
1 TAAT
48125584 GTAATTTCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 6 0.16
14 25 0.66
15 7 0.18
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATTAAATTAAT
Found at i:48125589 original size:28 final size:28
Alignment explanation
Indices: 48125523--48125577 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
48125513 ATTAATTAAA
48125523 CTAATTAAATTAATTATCTTAAAATAAT
1 CTAATTAAATTAATTATCTTAAAATAAT
48125551 CTAATTAAATTAATTAATC-TAAAATAA
1 CTAATTAAATTAATT-ATCTTAAAATAA
48125578 CTTAATGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (28 bp):
CTAATTAAATTAATTATCTTAAAATAAT
Found at i:48126924 original size:25 final size:25
Alignment explanation
Indices: 48126890--48126940 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
48126880 CATCGTGATT
48126890 AATATGTATATTTTGATACAGTCAA
1 AATATGTATATTTTGATACAGTCAA
48126915 AATATGTATATTTTGATACAGTCAA
1 AATATGTATATTTTGATACAGTCAA
48126940 A
1 A
48126941 CGTACATCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (25 bp):
AATATGTATATTTTGATACAGTCAA
Found at i:48130091 original size:9 final size:9
Alignment explanation
Indices: 48130079--48130135 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
48130069 TTTGATAGAC
48130079 ATGATATGT
1 ATGATATGT
*
48130088 ATGATATGCAC
1 ATGATATG--T
*
48130099 ATGACATGT
1 ATGATATGT
*
48130108 ATGATATGCAC
1 ATGATATG--T
48130119 ATGATATGT
1 ATGATATGT
48130128 ATGATATG
1 ATGATATG
48130136 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:48130102 original size:20 final size:20
Alignment explanation
Indices: 48130077--48130139 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
48130067 ATTTTGATAG
48130077 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
48130097 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
48130117 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48130137 ACA
1 ACA
48130140 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48130219 original size:24 final size:24
Alignment explanation
Indices: 48130192--48130345 Score: 238
Period size: 24 Copynumber: 6.4 Consensus size: 24
48130182 GGAGGAAGTG
*
48130192 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
48130216 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
48130240 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
48130264 CAAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
48130288 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
48130311 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
48130335 TAAAAGAGGCT
1 CAAAAG-GGCT
48130346 AGGCCTCTAG
Statistics
Matches: 122, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 21 0.17
24 97 0.80
25 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:48130316 original size:47 final size:47
Alignment explanation
Indices: 48130194--48130338 Score: 236
Period size: 47 Copynumber: 3.1 Consensus size: 47
48130184 AGGAAGTGCA
* *
48130194 AAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-T
*
48130242 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
48130289 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
48130336 AAA
1 AAA
48130339 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 47 0.52
48 44 0.48
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:48130588 original size:31 final size:31
Alignment explanation
Indices: 48130553--48130616 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
48130543 CGATTACAGT
48130553 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* ** *
48130584 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
48130615 AA
1 AA
48130617 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:48134857 original size:12 final size:13
Alignment explanation
Indices: 48134832--48134861 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
48134822 TGTGCTATAA
48134832 CTATTGCATTTAT
1 CTATTGCATTTAT
48134845 CTATTGC-TTTAT
1 CTATTGCATTTAT
48134857 CTATT
1 CTATT
48134862 CATGTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (13 bp):
CTATTGCATTTAT
Found at i:48144276 original size:21 final size:20
Alignment explanation
Indices: 48144250--48144299 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
48144240 CCTTGGAAGC
48144250 AAGAAATTGGAGTTGGAAGTG
1 AAGAAATT-GAGTTGGAAGTG
** *
48144271 AAGAAAGTTGAGGAGAAAGTG
1 AAGAAA-TTGAGTTGGAAGTG
48144292 AAGAAATT
1 AAGAAATT
48144300 AAAGAGACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 21 0.84
22 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.34, T:0.20
Consensus pattern (20 bp):
AAGAAATTGAGTTGGAAGTG
Found at i:48151841 original size:25 final size:25
Alignment explanation
Indices: 48151793--48151850 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
48151783 ATAAAACCTA
*
48151793 AAAATGAAATAGTATTAAATGAAGAT
1 AAAAT-AAAAAGTATTAAATGAAGAT
48151819 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAGAT
48151844 -AAATAAA
1 AAAATAAA
48151851 GATGAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAGAT
Found at i:48158864 original size:40 final size:40
Alignment explanation
Indices: 48158795--48159000 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
48158785 AACCCAAGTA
* * **
48158795 CCTTCGAGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48158834 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48158874 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
48158914 CCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48158954 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48158994 CCTTCGG
1 CCTTCGG
48159001 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 12 0.08
40 143 0.92
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48185012 original size:39 final size:39
Alignment explanation
Indices: 48184864--48185026 Score: 238
Period size: 40 Copynumber: 4.1 Consensus size: 39
48184854 CGGGCTTTAA
* * *
48184864 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAATCGCACAAATGCCTTCGGGACTTAGC
*
48184904 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-ATCGCACAAATGCCTTCGGGACTTAGC
*
48184944 TCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAA-TCGCACAAATGCCTTCGGGACTTAGC
48184984 CCGGA-ATTAGTAATCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAATCGCACAAATGCCTTCGGGACTTAGC
48185023 CCGG
1 CCGG
48185027 TTATCATCCG
Statistics
Matches: 114, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
39 32 0.28
40 82 0.72
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAGC
Found at i:48189760 original size:14 final size:14
Alignment explanation
Indices: 48189741--48189790 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
48189731 AAGAAAATAT
48189741 ATCATCTTATTTTC
1 ATCATCTTATTTTC
* *
48189755 ATCATCTTCAAATAT-
1 ATCATCTT--ATTTTC
48189770 ATCATCTTATTTTC
1 ATCATCTTATTTTC
48189784 ATCATCT
1 ATCATCT
48189791 CCAACCTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 3 0.10
14 15 0.52
15 8 0.28
16 3 0.10
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (14 bp):
ATCATCTTATTTTC
Found at i:48189777 original size:29 final size:29
Alignment explanation
Indices: 48189735--48189790 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
48189725 GATGAAAAGA
48189735 AAATATATCATCTTATTTTCATCATCTTC
1 AAATATATCATCTTATTTTCATCATCTTC
48189764 AAATATATCATCTTATTTTCATCATCT
1 AAATATATCATCTTATTTTCATCATCT
48189791 CCAACCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (29 bp):
AAATATATCATCTTATTTTCATCATCTTC
Found at i:48196411 original size:114 final size:114
Alignment explanation
Indices: 48196208--48196415 Score: 262
Period size: 114 Copynumber: 1.8 Consensus size: 114
48196198 CTCTGACTAC
* * * * **
48196208 AGACCAAAAACTTAGGTGATTCAAAAATCATTTAAAAGATAATTTGAATCTTTACTTTTTAAGAC
1 AGACCAAAAACTTAGGTGATTCAAAAACCATTTAAAAGATAACTTGAAGCCTTACTGATTAAGAC
*
48196273 CATAATCACTCCAAAATTTGGTTGAAGCACCTAGTAGAAGTTATGATTT
66 CATAATCACTCCAAAACTTGGTTGAAGCACCTAGTAGAAGTTATGATTT
* * *
48196322 AGACCACAAAA-TTAGGTGATTTAAAAACCATTTCAAAGATAACTTGAAGCCTTAC-GATTAGGA
1 AGACCA-AAAACTTAGGTGATTCAAAAACCATTTAAAAGATAACTTGAAGCCTTACTGATTAAG-
48196385 ACCATAATCAC-CCAAAAAACTT-GTTGAAGCA
64 ACCATAATCACTCC--AAAACTTGGTTGAAGCA
48196416 TCTCAAAATG
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
113 6 0.08
114 64 0.80
115 10 0.12
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.29
Consensus pattern (114 bp):
AGACCAAAAACTTAGGTGATTCAAAAACCATTTAAAAGATAACTTGAAGCCTTACTGATTAAGAC
CATAATCACTCCAAAACTTGGTTGAAGCACCTAGTAGAAGTTATGATTT
Found at i:48197351 original size:24 final size:25
Alignment explanation
Indices: 48197324--48197371 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
48197314 TTGATTGTTG
*
48197324 CTTT-ATTTTGGGGTATTTTGGTTA
1 CTTTCATTTTGGGGTAGTTTGGTTA
* *
48197348 CTTTCTTTTTGGGTTAGTTTGGTT
1 CTTTCATTTTGGGGTAGTTTGGTT
48197372 TATTTTAGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.08, C:0.06, G:0.25, T:0.60
Consensus pattern (25 bp):
CTTTCATTTTGGGGTAGTTTGGTTA
Found at i:48211466 original size:38 final size:38
Alignment explanation
Indices: 48211415--48211491 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
48211405 CCCGTTTAAT
48211415 CTATTTTTATCTCATCATCACTCACTTAAAAGCTATAG
1 CTATTTTTATCTCATCATCACTCACTTAAAAGCTATAG
48211453 CTATTTTTATCTCATCATCACTCACTTAAAAGCTATAG
1 CTATTTTTATCTCATCATCACTCACTTAAAAGCTATAG
48211491 C
1 C
48211492 GTCTCCCAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (38 bp):
CTATTTTTATCTCATCATCACTCACTTAAAAGCTATAG
Found at i:48215872 original size:22 final size:22
Alignment explanation
Indices: 48215847--48215888 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
48215837 ATCTTAAAGG
48215847 ATTCTAAAATTTTATTAAAAAA
1 ATTCTAAAATTTTATTAAAAAA
48215869 ATTCTAAAATTTTATTAAAA
1 ATTCTAAAATTTTATTAAAA
48215889 TATAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTCTAAAATTTTATTAAAAAA
Found at i:48216257 original size:9 final size:10
Alignment explanation
Indices: 48216235--48216311 Score: 59
Period size: 10 Copynumber: 7.4 Consensus size: 10
48216225 ATTTATAACC
48216235 TTTTAATAAT
1 TTTTAATAAT
*
48216245 TTTTAATCAT
1 TTTTAATAAT
48216255 TTTTAATATAACT
1 TTTT-A-ATAA-T
*
48216268 TTTT-ATAAC
1 TTTTAATAAT
* *
48216277 TTTTCATAGT
1 TTTTAATAAT
48216287 TTTT-ATAAAT
1 TTTTAAT-AAT
48216297 TTTTAATTAAT
1 TTTTAA-TAAT
48216308 TTTT
1 TTTT
48216312 TAAAGTTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
9 6 0.11
10 30 0.56
11 9 0.17
12 4 0.07
13 5 0.09
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.61
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:48216290 original size:42 final size:42
Alignment explanation
Indices: 48216226--48216313 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
48216216 TACTTTAAAA
*
48216226 TTTATAACCTTTTAATAATTTTTA-ATCATTTTTAATATAACTT
1 TTTATAACCTTTTAATAATTTTTATA-AATTTTTAAT-TAACTT
* * *
48216269 TTTATAA-CTTTTCATAGTTTTTATAAATTTTTAATTAATTT
1 TTTATAACCTTTTAATAATTTTTATAAATTTTTAATTAACTT
48216310 TTTA
1 TTTA
48216314 AAGTTTTTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
41 9 0.22
42 23 0.57
43 8 0.20
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (42 bp):
TTTATAACCTTTTAATAATTTTTATAAATTTTTAATTAACTT
Found at i:48216396 original size:20 final size:21
Alignment explanation
Indices: 48216373--48216426 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
48216363 CTCATAACTT
48216373 TTTATAATTTTCCTCTAA-TA
1 TTTATAATTTTCCTCTAATTA
* *
48216393 TTTAT-ATATCTCTTCTAATTTA
1 TTTATAAT-TTTCCTCTAA-TTA
48216415 TTTATAATTTTC
1 TTTATAATTTTC
48216427 AAACAATCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 2 0.07
20 13 0.48
22 10 0.37
23 2 0.07
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTATAATTTTCCTCTAATTA
Found at i:48223886 original size:2 final size:2
Alignment explanation
Indices: 48223881--48223914 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
48223871 TTATATACAT
48223881 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
48223915 TTTTGTGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:48225124 original size:24 final size:25
Alignment explanation
Indices: 48225097--48225143 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
48225087 TTTTATTTAT
*
48225097 ATTTAATGATGTATT-TAATTAACA
1 ATTTAATGATATATTCTAATTAACA
* *
48225121 ATTTTATTATATATTCTAATTAA
1 ATTTAATGATATATTCTAATTAA
48225144 TTTTTTTAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
ATTTAATGATATATTCTAATTAACA
Found at i:48235957 original size:57 final size:57
Alignment explanation
Indices: 48235869--48235982 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
48235859 TTCCACCTGT
48235869 TCCTTCATTTGAATTTTGAATCATTCGCAAGTTCTACATTAAATCATCAAATACATC
1 TCCTTCATTTGAATTTTGAATCATTCGCAAGTTCTACATTAAATCATCAAATACATC
*
48235926 TCCTTCATTTGAATTTTGAATCATTCGCAAGTTCTACATTAAATCATCGAATACATC
1 TCCTTCATTTGAATTTTGAATCATTCGCAAGTTCTACATTAAATCATCAAATACATC
48235983 AACACCATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (57 bp):
TCCTTCATTTGAATTTTGAATCATTCGCAAGTTCTACATTAAATCATCAAATACATC
Found at i:48239023 original size:15 final size:15
Alignment explanation
Indices: 48238985--48239024 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
48238975 TTATTTTAAG
* *
48238985 ATTAAAATTTTAAAT
1 ATTAAAAATATAAAT
48239000 ATTAAAAAATATAAAT
1 ATT-AAAAATATAAAT
48239016 ATTAAAAAT
1 ATTAAAAAT
48239025 GATCAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTAAAAATATAAAT
Found at i:48240746 original size:4 final size:4
Alignment explanation
Indices: 48240737--48240782 Score: 62
Period size: 4 Copynumber: 12.0 Consensus size: 4
48240727 AACTAAACAG
48240737 GAAA GAAA GAAA GAAA -AAA GAAA GAAA -AAGA GAAA G-AA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAAA
48240783 TCCACGGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 8 0.21
4 28 0.74
5 2 0.05
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:48240761 original size:19 final size:20
Alignment explanation
Indices: 48240692--48240782 Score: 66
Period size: 19 Copynumber: 4.6 Consensus size: 20
48240682 ACAAATAAAT
* *
48240692 AAAAGAAA-AAAGAAATAGA
1 AAAAGAAAGAAAGAAAGACA
*
48240711 AAAAGAAACAAAGCAAA-ACTA
1 AAAAGAAAGAAAG-AAAGAC-A
*
48240732 AACAGGAAAGAAAGAAAGA-A
1 AA-AAGAAAGAAAGAAAGACA
48240752 AAAAGAAAGAAA-AAGAGA-A
1 AAAAGAAAGAAAGAA-AGACA
*
48240771 AGAAGAAAGAAA
1 AAAAGAAAGAAA
48240783 TCCACGGGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
18 2 0.03
19 32 0.52
20 8 0.13
21 9 0.15
22 10 0.16
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.02
Consensus pattern (20 bp):
AAAAGAAAGAAAGAAAGACA
Found at i:48241144 original size:20 final size:20
Alignment explanation
Indices: 48241119--48241156 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48241109 GAAATTTGTA
* *
48241119 TGAAAATATAAGATTAATTG
1 TGAAAAAATAAAATTAATTG
48241139 TGAAAAAATAAAATTAAT
1 TGAAAAAATAAAATTAAT
48241157 ATCGATTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TGAAAAAATAAAATTAATTG
Found at i:48242058 original size:16 final size:16
Alignment explanation
Indices: 48242007--48242062 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
48241997 TTATATACTC
*
48242007 ATGAATTGAGTATGGT
1 ATGAATTGAGTATTGT
* *
48242023 ATGAAATGATGTATT-C
1 ATGAATTGA-GTATTGT
48242039 ATGAATTGAGTATTGT
1 ATGAATTGAGTATTGT
48242055 ATG-ATTGA
1 ATGAATTGA
48242063 TGCCATCGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 10 0.30
16 19 0.58
17 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.25, T:0.39
Consensus pattern (16 bp):
ATGAATTGAGTATTGT
Found at i:48252967 original size:27 final size:27
Alignment explanation
Indices: 48252936--48252987 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
48252926 ATCTTAATGT
48252936 TAAATATATATCATATAAAAACTTACA
1 TAAATATATATCATATAAAAACTTACA
* *
48252963 TAAATATATATCATATCATAACTTA
1 TAAATATATATCATATAAAAACTTA
48252988 TATACCTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.37
Consensus pattern (27 bp):
TAAATATATATCATATAAAAACTTACA
Found at i:48253012 original size:43 final size:43
Alignment explanation
Indices: 48252959--48253139 Score: 245
Period size: 43 Copynumber: 4.0 Consensus size: 43
48252949 TATAAAAACT
*
48252959 TACATAAATATATATCATATCATAACTTATATACCTTACATAA
1 TACATAAATATATATCATATCATAACTTACATACCTTACATAA
*
48253002 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAA
1 TACATAAATATATATCATATCATAACTTAC---A--TAC----CTTACATAA
*
48253054 TACATAAATATATATCATATCATAACTTACATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTACATACCTTACATAA
*
48253097 TACATAAATATATATCATTTCATAACTTACATACCTTACATAA
1 TACATAAATATATATCATATCATAACTTACATACCTTACATAA
48253140 ATGCAGGGGC
Statistics
Matches: 123, Mismatches: 6, Indels: 18
0.84 0.04 0.12
Matches are distributed among these distances:
43 78 0.63
46 1 0.01
47 2 0.02
48 3 0.02
49 1 0.01
52 38 0.31
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (43 bp):
TACATAAATATATATCATATCATAACTTACATACCTTACATAA
Found at i:48253035 original size:9 final size:9
Alignment explanation
Indices: 48253023--48253139 Score: 84
Period size: 9 Copynumber: 13.4 Consensus size: 9
48253013 ATATCATATA
48253023 ATAACTTAC
1 ATAACTTAC
48253032 ATAACTTAC
1 ATAACTTAC
*
48253041 AAAACTTAC
1 ATAACTTAC
48253050 ATAA--TAC
1 ATAACTTAC
* *
48253057 ATAA-ATAT
1 ATAACTTAC
* *
48253065 ATATCATATC
1 ATAACTTA-C
48253075 ATAACTTAC
1 ATAACTTAC
48253084 ATAACTTAC
1 ATAACTTAC
48253093 ATAA--TAC
1 ATAACTTAC
* *
48253100 ATAA-ATAT
1 ATAACTTAC
* *
48253108 ATATCATTTC
1 ATAAC-TTAC
48253118 ATAACTTAC
1 ATAACTTAC
*
48253127 ATACCTTAC
1 ATAACTTAC
48253136 ATAA
1 ATAA
48253140 ATGCAGGGGC
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
7 14 0.16
8 10 0.12
9 51 0.59
10 11 0.13
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:48253035 original size:52 final size:52
Alignment explanation
Indices: 48252979--48253093 Score: 194
Period size: 52 Copynumber: 2.2 Consensus size: 52
48252969 TATATCATAT
* * *
48252979 CATAACTTATATACCTTACATAATACATAAATATATATCATATAATAACTTA
1 CATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTA
*
48253031 CATAACTTACAAAACTTACATAATACATAAATATATATCATATCATAACTTA
1 CATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTA
48253083 CATAACTTACA
1 CATAACTTACA
48253094 TAATACATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (52 bp):
CATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTA
Found at i:48253068 original size:95 final size:95
Alignment explanation
Indices: 48252959--48253136 Score: 311
Period size: 95 Copynumber: 1.9 Consensus size: 95
48252949 TATAAAAACT
* *
48252959 TACATAAATATATATCATATCATAACTTATATACCTTACATAATACATAAATATATATCATATAA
1 TACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAATATATATCATATAA
48253024 TAACTTACATAACTTACAAAACTTACATAA
66 TAACTTACATAACTTACAAAACTTACATAA
* *
48253054 TACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAATATATATCATTTCA
1 TACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAATATATATCATATAA
*
48253119 TAACTTACATACCTTACA
66 TAACTTACATAACTTACA
48253137 TAAATGCAGG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 78 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (95 bp):
TACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAATATATATCATATAA
TAACTTACATAACTTACAAAACTTACATAA
Found at i:48256758 original size:29 final size:29
Alignment explanation
Indices: 48256716--48256773 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
48256706 AGTTGCTGGT
48256716 TATGTTAGCATAAAAGTTGAAATTTTTAA
1 TATGTTAGCATAAAAGTTGAAATTTTTAA
48256745 TATGTTAGCATAAAAGTTGAAATTTTTAA
1 TATGTTAGCATAAAAGTTGAAATTTTTAA
48256774 CTTATTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.41
Consensus pattern (29 bp):
TATGTTAGCATAAAAGTTGAAATTTTTAA
Found at i:48258135 original size:39 final size:39
Alignment explanation
Indices: 48258009--48258124 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
48257999 ATATATGGTG
*
48258009 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGTGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
*
48258048 ATTATATCCGGACTTAAGGTCCATAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
*
48258087 ATTATATTCGGACTTAAGGTCCGTAGGCTATATGCGGG
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGG
48258125 GATCATATTC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
Found at i:48258156 original size:78 final size:78
Alignment explanation
Indices: 48258009--48258175 Score: 203
Period size: 78 Copynumber: 2.1 Consensus size: 78
48257999 ATATATGGTG
* * * *
48258009 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGTGGGAATTATATCCGGACTTAAGGTCCATAG
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGAATCATATCCGAACTTAAGGTCCACAG
48258074 GCTATATGCGGGA
66 GCTATATGCGGGA
* * * **
48258087 ATTATATTCGGACTTAAGGTCCGTAGGCTATATGCGGGGATCATATTCGAACTTCGGGTTCGC-C
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGAATCATATCCGAACTTAAGG-TC-CAC
* *
48258151 A-GCTATGTGCTGGA
64 AGGCTATATGCGGGA
48258165 ATTATATCCGG
1 ATTATATCCGG
48258176 GCTAATAGTC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 71 0.95
79 3 0.04
80 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (78 bp):
ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGAATCATATCCGAACTTAAGGTCCACAG
GCTATATGCGGGA
Found at i:48262955 original size:47 final size:47
Alignment explanation
Indices: 48262884--48262977 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
48262874 CATTGAATTT
*
48262884 TTGAAGTATCATTTAGATTTGTTGTTATTGGTTAGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTCGTTGTTATTGGTTAGATTTGATGTTGC
*
48262931 TTGAAGTATCATTTAGATTCGTTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTCGTTGTTATTGGTTAGATTTGATGTTGC
48262978 AGGAAGGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.20, C:0.05, G:0.24, T:0.50
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTCGTTGTTATTGGTTAGATTTGATGTTGC
Found at i:48263143 original size:43 final size:42
Alignment explanation
Indices: 48263085--48263241 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 42
48263075 GGCATTTCAA
* *
48263085 AAAAAGCACCGCTAAAAGTCACATTCTTTAGCGGCGTTTGTAC
1 AAAAAGCGCCGCTAAAAGTCACGTTCTTTAGCGGCGTTT-TAC
* * * * *
48263128 AAAAAGAGCCACTAAAGGTCACGTTTTTTAGCGGCGTTTTTAG
1 AAAAAGCGCCGCTAAAAGTCACGTTCTTTAGCGGCG-TTTTAC
*
48263171 AAAAAGCGCCGCT-AAAGAT-ATGTTCTTTAGCGGCGTTTT-C
1 AAAAAGCGCCGCTAAAAG-TCACGTTCTTTAGCGGCGTTTTAC
*
48263211 AAGAAAGCGCCGCTAAAAGTCACGTTATTTA
1 AA-AAAGCGCCGCTAAAAGTCACGTTCTTTA
48263242 ACAGCTTAGC
Statistics
Matches: 94, Mismatches: 15, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
40 2 0.02
41 16 0.17
42 29 0.31
43 44 0.47
44 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (42 bp):
AAAAAGCGCCGCTAAAAGTCACGTTCTTTAGCGGCGTTTTAC
Found at i:48267896 original size:3 final size:3
Alignment explanation
Indices: 48267883--48268044 Score: 77
Period size: 3 Copynumber: 54.0 Consensus size: 3
48267873 TATTTTTAAA
*
48267883 TAT TGT TAT TAT TAT TA- TATT TAT TA- TAT TA- TATT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT
* ** * * *
48267926 TAC TGG TAC TAT TAT T-T TAT ATATT TAT TAC CAT TATT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT
* * * * * *
48267974 TAT TAA TAA CA- TAT TGT TAT TTT TAT TAT T-T TAT TAT TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
48268020 TAT TAT TAT TAAA TAC TAT TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT
48268045 ATTTTGTACA
Statistics
Matches: 122, Mismatches: 24, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
2 13 0.11
3 91 0.75
4 17 0.14
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:48267912 original size:17 final size:17
Alignment explanation
Indices: 48267892--48267978 Score: 51
Period size: 17 Copynumber: 5.3 Consensus size: 17
48267882 ATATTGTTAT
48267892 TATTATTATATTTA-T-
1 TATTATTATATTTATTA
*
48267907 TA-TATTATATTTATTT
1 TATTATTATATTTATTA
** *
48267923 TATTACTGGTA-CTATTA
1 TATTA-TTATATTTATTA
*
48267940 TTTTA-TATATTTATTA
1 TATTATTATATTTATTA
*
48267956 CCATTATT-TATTTATTA
1 -TATTATTATATTTATTA
48267973 TTATTA
1 -TATTA
48267979 ATAACATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
14 11 0.21
15 5 0.09
16 7 0.13
17 26 0.49
18 4 0.08
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTATTATATTTATTA
Found at i:48267914 original size:14 final size:14
Alignment explanation
Indices: 48267888--48267927 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
48267878 TTAAATATTG
48267888 TTATTATTATTATAT
1 TTATTA-TATTATAT
48267903 TTATTATATTATAT
1 TTATTATATTATAT
*
48267917 TTATTTTATTA
1 TTATTATATTA
48267928 CTGGTACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTATATTATAT
Found at i:48273350 original size:15 final size:14
Alignment explanation
Indices: 48273330--48273372 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
48273320 AAATGTGGCA
*
48273330 AAAAAAACAAAAATG
1 AAAAAAACAAAAA-C
48273345 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
48273359 AAAAACAACAAAAA
1 AAAAA-AACAAAAA
48273373 AAGATTGTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.02
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:48273371 original size:21 final size:21
Alignment explanation
Indices: 48273332--48273372 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48273322 ATGTGGCAAA
*
48273332 AAAAACAAAAATGAAAAAAAC
1 AAAAACAAAAATCAAAAAAAC
48273353 AAAAACAAAAA-CAACAAAAA
1 AAAAACAAAAATCAA-AAAAA
48273373 AAGATTGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.83, C:0.12, G:0.02, T:0.02
Consensus pattern (21 bp):
AAAAACAAAAATCAAAAAAAC
Found at i:48275357 original size:45 final size:45
Alignment explanation
Indices: 48275293--48275502 Score: 155
Period size: 45 Copynumber: 4.7 Consensus size: 45
48275283 AATTTACAAA
*
48275293 TCTTATCTCCATGTATCGGCTATGGAATAGATCAAAGATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAGATGGCGAG
** *** *** *
48275338 TCTTATCTCCATGTATCGGCTATGGAGGAGATTTTAG-CCCCTAG
1 TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAGATGGCGAG
* * * * **
48275382 TCTTATCTTCC-TGAAGT-TG-TA-GGAAGCAGACTGAAA-TTTAC-AG
1 TCTTATC-TCCATGTA-TCGGCTATGGAA-CAGA-TCAAAGATGGCGAG
* *
48275425 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAGATGGCGAG
*
48275471 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAACAGAT
48275503 TTTAGCCATC
Statistics
Matches: 127, Mismatches: 26, Indels: 24
0.72 0.15 0.14
Matches are distributed among these distances:
42 3 0.02
43 11 0.09
44 32 0.25
45 76 0.60
46 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAGATGGCGAG
Found at i:48275533 original size:133 final size:133
Alignment explanation
Indices: 48275113--48275509 Score: 659
Period size: 133 Copynumber: 3.0 Consensus size: 133
48275103 TGAATTCACA
* * * * *
48275113 AGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTAAAAATTTACAGATCTTATCTCAATGTATCA
1 AGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACT-GAAATTTACAGATCTTATCTCCATGTATCG
* * *
48275178 GCTACGGAGTAAATCAAAGATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGC
65 GCTATGGAGTAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
48275243 CCCT
130 CCCT
* *
48275247 AGTCTTATCTTCCTGATGTTGTAGGAAGCAGACTGAAATTTACAAATCTTATCTCCATGTATCGG
1 AGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAATTTACAGATCTTATCTCCATGTATCGG
* *
48275312 CTATGGAATAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGGAGATTTTAGCC
66 CTATGGAGTAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
48275377 CCT
131 CCT
48275380 AGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAATTTACAGATCTTATCTCCATGTATCGG
1 AGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAATTTACAGATCTTATCTCCATGTATCGG
* *
48275445 CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGTAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
48275510 ATCAACCTTA
Statistics
Matches: 245, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
133 214 0.87
134 31 0.13
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (133 bp):
AGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAATTTACAGATCTTATCTCCATGTATCGG
CTATGGAGTAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
CCT
Found at i:48275608 original size:176 final size:176
Alignment explanation
Indices: 48275381--48275985 Score: 969
Period size: 176 Copynumber: 3.4 Consensus size: 176
48275371 TTAGCCCCTA
* * *
48275381 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAA-ATTTACAGATCTTATCTCCATGTATCGG
1 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTT-CAGATCTTATCTCCATGTATCGG
*
48275445 CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
65 CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
* * * *
48275510 ATCAACCTTATCTCTCTAAAGTTGCAGAGAGTAGGTTGAAGATACAG
130 ACCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGATACAG
* * **
48275557 GTCTCATCTTTCTGAAGTTGTAGGAAGCAGACCGAAGATTTCATTTCTTATCTCCATGTATCGGC
1 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTCCATGTATCGGC
*
48275622 TGTGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
66 TATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
* * * *
48275687 CCAGCCTTATCTCTCTGAAGTTGTAGGGAGCAGGTTGATGATACAA
131 CCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGATACAG
* * *
48275733 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCAAAGATTTCAGATCTTACCTCCATGTATCGAC
1 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTCCATGTATCGGC
* * *
48275798 TATGGAGCAGATTAAAAATGGCGAGTCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCCA
66 TATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
48275863 CCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGATACAG
131 CCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGATACAG
*
48275909 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTGAAGATTTCAGATCTTATCTCCATGTATCGGC
1 GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTCCATGTATCGGC
*
48275974 TATGGAGTAGAT
66 TATGGAGCAGAT
48275986 TTTATTCACC
Statistics
Matches: 393, Mismatches: 35, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
176 389 0.99
177 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (176 bp):
GTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTCCATGTATCGGC
TATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
CCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGATACAG
Found at i:48275938 original size:43 final size:44
Alignment explanation
Indices: 48275868--48275962 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 44
48275858 AGCCACCAGC
** *
48275868 CTTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGA-TACAGGT
1 CTTATCTCTCTGAAGTTGCAGAGAGCAGACTGAAGATTACAGAT
* *
48275911 CTTATCTTTCTGAAGTTGCAG-GAAGCAGACTGAAGATTTCAGAT
1 CTTATCTCTCTGAAGTTGCAGAG-AGCAGACTGAAGATTACAGAT
48275955 CTTATCTC
1 CTTATCTC
48275963 CATGTATCGG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 31 0.70
44 12 0.27
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (44 bp):
CTTATCTCTCTGAAGTTGCAGAGAGCAGACTGAAGATTACAGAT
Found at i:48276146 original size:84 final size:84
Alignment explanation
Indices: 48276031--48276442 Score: 596
Period size: 84 Copynumber: 4.9 Consensus size: 84
48276021 AGAGCAGGCT
* * *
48276031 GAAGACAGCGAGCCTTAACCCCCTAAACAGTAAGGTAACAGGCTGGAAAATACAGATCTCCCCTA
1 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTA
48276096 AACAGTAGTGGAGCAGATC
66 AACAGTAGTGGAGCAGATC
* *
48276115 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCT-AAAACATACAGATCTCCCCT
1 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAA-ATACAGATCTCCCCT
48276179 AAACAGTAGTGGAGCAGATC
65 AAACAGTAGTGGAGCAGATC
* * * * *
48276199 GAAGACAGCAAGCCTTACCCCCCTAAGTAGTAGGGTAACAGGTTGGAAAATACAGATATACCCTA
1 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTA
* *
48276264 AATAGTAGTGGAGTAGATC
66 AACAGTAGTGGAGCAGATC
*
48276283 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTCCCTA
1 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTA
*
48276348 AACAGTAGTGGAGCATATC
66 AACAGTAGTGGAGCAGATC
* * *
48276367 AAAGACAGCAAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGCCT-AAAAATTACAGATCTTATCT
1 GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAA-TACAGATC---TC-
48276430 CCCTAAACAGTAG
61 CCCTAAACAGTAG
48276443 AGCAAATTAA
Statistics
Matches: 295, Mismatches: 26, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
82 4 0.01
83 35 0.12
84 239 0.81
85 3 0.01
86 1 0.00
87 13 0.04
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (84 bp):
GAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTA
AACAGTAGTGGAGCAGATC
Found at i:48276223 original size:44 final size:44
Alignment explanation
Indices: 48276090--48276224 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
48276080 ATACAGATCT
*
48276090 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTACC
* * * * * * * *
48276134 CCCCTAAGCAGTAG-GGTAACA-AGCTAAAACA-TACAG--AT-CT
1 CCCCTAAACAGTAGTGG-AGCAGATCGAAGACAGCA-AGCCTTACC
48276174 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTACC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTACC
48276218 CCCCTAA
1 CCCCTAA
48276225 GTAGTAGGGT
Statistics
Matches: 66, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
40 16 0.24
41 12 0.18
42 2 0.03
43 12 0.18
44 24 0.36
ACGTcount: A:0.36, C:0.29, G:0.20, T:0.15
Consensus pattern (44 bp):
CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTACC
Found at i:48276315 original size:44 final size:44
Alignment explanation
Indices: 48276090--48276398 Score: 131
Period size: 40 Copynumber: 7.3 Consensus size: 44
48276080 ATACAGATCT
48276090 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
* * * * ** *
48276134 CCCCTAAGCAGTAG-GGTAACA-AGCTAA-A-A-CATA--CAGATC
1 CCCCTAAACAGTAGTGG-AGCAGATCGAAGACAGCA-AGCCTTAAC
*
48276173 TCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTACC
1 -CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
** * * * * * *
48276218 CCCCTAAGTAGTAG-GGTAACAGGTTGGAAAATA-C-AG--ATATA-
1 CCCCTAAACAGTAGTGG-AGCA-GATCGAAGACAGCAAGCCTTA-AC
* *
48276259 -CCCTAAATAGTAGTGGAGTAGATCGAAGACAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
* * * * * * *
48276302 CCCCTAAGCAGTAG-GGTAACAGGCTGGAAAATA-C-AGATCTT---
1 CCCCTAAACAGTAGTGG-AGCA-GATCGAAGACAGCAAG-CCTTAAC
* *
48276343 -CCCTAAACAGTAGTGGAGCATATCAAAGACAGCAAGCCTTAA-
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
*
48276385 CCCCTAAGCAGTAG
1 CCCCTAAACAGTAG
48276399 GGTAACAGCC
Statistics
Matches: 186, Mismatches: 50, Indels: 59
0.63 0.17 0.20
Matches are distributed among these distances:
39 15 0.08
40 52 0.28
41 18 0.10
42 3 0.02
43 30 0.16
44 51 0.27
45 17 0.09
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (44 bp):
CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
Found at i:48276836 original size:17 final size:17
Alignment explanation
Indices: 48276814--48276852 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
48276804 ACCCTACTTG
48276814 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
*
48276831 CCACTAACTCCATTACC
1 CCACTAACTCCATCACC
48276848 CCACT
1 CCACT
48276853 TGCCACCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.51, G:0.00, T:0.21
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:48277231 original size:3 final size:3
Alignment explanation
Indices: 48277218--48277375 Score: 78
Period size: 3 Copynumber: 53.0 Consensus size: 3
48277208 TATTTTTAAA
*
48277218 TAT TGT TAT TAT TAT TAT TAT TAT TA- TATT TAT TA- TAT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T
* ** * * * *
48277262 TAT T-T TAT TAC TGG TAC TAT TAT T-T TAT ATATT TAT TAC CAC TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T
* * * * * *
48277308 TATT TAT TAT TAT TAT TAT TAA TAA CA- TAT TGT TCT TTT TAT TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
48277353 T-T TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
48277376 CATGGTACTA
Statistics
Matches: 122, Mismatches: 21, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
2 13 0.11
3 94 0.77
4 14 0.11
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:48277256 original size:14 final size:14
Alignment explanation
Indices: 48277232--48277271 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
48277222 GTTATTATTA
48277232 TTATTATTATTATAT
1 TTATTA-TATTATAT
48277247 TTATTATATTATAT
1 TTATTATATTATAT
*
48277261 TTATTTTATTA
1 TTATTATATTA
48277272 CTGGTACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTATATTATAT
Found at i:48277256 original size:20 final size:20
Alignment explanation
Indices: 48277226--48277372 Score: 74
Period size: 20 Copynumber: 7.3 Consensus size: 20
48277216 AATATTGTTA
48277226 TTATTATTATTATTATTATAT
1 TTATTA-TATTATTATTATAT
48277247 TTATTATATTA-TATT-TATT
1 TTATTATATTATTATTATA-T
** *
48277266 TTATTACTGGTACTATTAT-T
1 TTATTA-TATTATTATTATAT
**
48277286 TTA-TATATTTATTACCACTAT
1 TTATTATA-TTATTATTA-TAT
48277307 TTATT-TATTATTATTATTAT
1 TTATTATATTATTATTA-TAT
* * * * * *
48277327 TAATAACA-TATTGTTCTTT
1 TTATTATATTATTATTATAT
*
48277346 TTATTATTTTATTATTAT-T
1 TTATTATATTATTATTATAT
48277365 GTTATTAT
1 -TTATTAT
48277373 TATCATGGTA
Statistics
Matches: 93, Mismatches: 22, Indels: 23
0.67 0.16 0.17
Matches are distributed among these distances:
18 3 0.03
19 25 0.27
20 46 0.49
21 17 0.18
22 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TTATTATATTATTATTATAT
Found at i:48277541 original size:17 final size:17
Alignment explanation
Indices: 48277519--48277570 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
48277509 ATTTTTTCCC
48277519 TATATTATTATTATTTT
1 TATATTATTATTATTTT
48277536 TATATTATT-TTCATTTT
1 TATATTATTATT-ATTTT
48277553 TATTAATATATTATTATT
1 TA-T-AT-TATTATTATT
48277571 ATTGTCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.07
17 16 0.53
18 1 0.03
19 2 0.07
20 7 0.23
21 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TATATTATTATTATTTT
Found at i:48279222 original size:43 final size:42
Alignment explanation
Indices: 48279143--48279298 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 42
48279133 CAATGCCATA
* ** * *
48279143 TCCCAGATATGGTCTTACATGTTATCACACAT-CGATGTCACTG
1 TCCCAGACATGGTCTTACATGAAATCATA-ATACGATG-CAATG
* * *
48279186 TCTCAGACAGGGTCTTACATGAAATCATAATACGATGCCAATA
1 TCCCAGACATGGTCTTACATGAAATCATAATACGATG-CAATG
* *
48279229 TCCCAGACATGGTCTTACA-CATAATCATAATACAATGCTAATG
1 TCCCAGACATGGTCTTACATGA-AATCATAATACGATGC-AATG
*
48279272 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGACATGGTCTTACATGAAATCA
48279299 CATCTCGATA
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 4 0.04
43 89 0.96
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGAAATCATAATACGATGCAATG
Found at i:48281297 original size:196 final size:196
Alignment explanation
Indices: 48280949--48281326 Score: 519
Period size: 196 Copynumber: 1.9 Consensus size: 196
48280939 GCACCTCAAT
* * *
48280949 TTTTATAATGTCATTGTTAATCTAAATACATCATTCTAGCTAAAATGTTGACGTGCACATGTCCA
1 TTTTATAATGTCATTGTTAATATAAATACATCATTCTAACTAAAATGTTGACGTACACATGTCCA
* * *
48281014 AATACACAACCTTTTACTTAATTTTTGAGATTATACAATAATGGTCAAATTCCAATTTTTGTCCT
66 AATACACAACCTTTTACTT-ATTTTTGAGATTATACAACAATGGTCAAATTCCAATTTTGGTCCC
*
48281079 TATATTATGTTCAAATTTGAAATTTAATCTCTATACTTTAATTTTTGACATAATTCGGTACCTTA
130 TATATTATGCTCAAATTTGAAATTTAATCTCTATACTTTAATTTTTGACATAATTCGGTACCTTA
48281144 AC
195 AC
* * * *
48281146 TTTTATAATGTCATTGTTAGTATAAATACATTATTGTAATTAAAATGTTGACGTACACAT-TCCA
1 TTTTATAATGTCATTGTTAATATAAATACATCATTCTAACTAAAATGTTGACGTACACATGTCCA
* * *
48281210 AATACACAACCTTTTATCTT-TTCTTTCG-GATTATATAACAATGGTTAAATTTCAATTTTGGTC
66 AATACACAACCTTTTA-CTTATT-TTT-GAGATTATACAACAATGGTCAAATTCCAATTTTGGTC
* * ** * *
48281273 CCTATGTTATGCTCAATTTTGAAATTTAATCTCTATGTTTTAGTTTTTTACATA
128 CCTATATTATGCTCAAATTTGAAATTTAATCTCTATACTTTAATTTTTGACATA
48281327 TACCTCAACA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
195 2 0.01
196 99 0.63
197 57 0.36
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.44
Consensus pattern (196 bp):
TTTTATAATGTCATTGTTAATATAAATACATCATTCTAACTAAAATGTTGACGTACACATGTCCA
AATACACAACCTTTTACTTATTTTTGAGATTATACAACAATGGTCAAATTCCAATTTTGGTCCCT
ATATTATGCTCAAATTTGAAATTTAATCTCTATACTTTAATTTTTGACATAATTCGGTACCTTAA
C
Found at i:48287832 original size:11 final size:10
Alignment explanation
Indices: 48287816--48287859 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
48287806 TTTTAAATAT
48287816 AAAAATTACAA
1 AAAAATTA-AA
48287827 AAAAATATAAA
1 AAAAAT-TAAA
* *
48287838 TAAAATTTAA
1 AAAAATTAAA
48287848 AAAAATTAAA
1 AAAAATTAAA
48287858 AA
1 AA
48287860 TATATTAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 13 0.46
11 13 0.46
12 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:48287850 original size:22 final size:23
Alignment explanation
Indices: 48287809--48287861 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
48287799 TTAATTTTTT
*
48287809 TAAATATAAAAATTACAAAAAAA
1 TAAAAATAAAAATTACAAAAAAA
* * *
48287832 TATAAATAAAATTTA-AAAAAAT
1 TAAAAATAAAAATTACAAAAAAA
48287854 TAAAAATA
1 TAAAAATA
48287862 TATTAAAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAAAATAAAAATTACAAAAAAA
Found at i:48287899 original size:10 final size:10
Alignment explanation
Indices: 48287864--48287898 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
48287854 TAAAAATATA
*
48287864 TTAAAGCTTT
1 TTAAAACTTT
48287874 TTAAAACTTT
1 TTAAAACTTT
48287884 TTAAAAC-TT
1 TTAAAACTTT
48287893 TTAAAA
1 TTAAAA
48287899 AAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (10 bp):
TTAAAACTTT
Found at i:48291215 original size:27 final size:27
Alignment explanation
Indices: 48291185--48291362 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48291175 ATATTGAGTC
* * * *
48291185 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48291212 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48291239 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48291267 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48291294 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48291321 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48291348 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48291363 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48291324 original size:82 final size:81
Alignment explanation
Indices: 48291206--48291361 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48291196 TGCTATATAA
* *
48291206 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48291271 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48291288 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48291352 CACTTAGTGC
65 CACTTAGTGC
48291362 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48292567 original size:43 final size:43
Alignment explanation
Indices: 48292506--48292592 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
48292496 ATCTTTAACA
48292506 TATCTTTCACTTTTCATCAACAACTATCAAAAAGCTCAAGCAC
1 TATCTTTCACTTTTCATCAACAACTATCAAAAAGCTCAAGCAC
48292549 TATCTTTCACTTTTCATCAACAACTATCAAAAAGCTCAAGCAC
1 TATCTTTCACTTTTCATCAACAACTATCAAAAAGCTCAAGCAC
48292592 T
1 T
48292593 CATCAATGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.37, C:0.28, G:0.05, T:0.31
Consensus pattern (43 bp):
TATCTTTCACTTTTCATCAACAACTATCAAAAAGCTCAAGCAC
Found at i:48297306 original size:136 final size:138
Alignment explanation
Indices: 48297058--48297332 Score: 443
Period size: 136 Copynumber: 2.0 Consensus size: 138
48297048 CATAGATATA
48297058 TAATATATGAATTTGATTCATACAAAATATTAATTGTATAATATTTACTGAATTTATTAATATAA
1 TAATATATGAATTTGATTCATACAAAATATTAATTGTATAATATTTACTGAATTTATTAATATAA
**
48297123 ACAATATATATTAATAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
66 ACAATATATATTAATAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
48297188 AATA-AAT
131 AATATAAT
48297195 TAATATATGAATTTGATTCATAC-AAATATTAATTGTATATATATTTA-TAGAATTTATT-ATAT
1 TAATATATGAATTTGATTCATACAAAATATTAATTGTATA-ATATTTACT-GAATTTATTAATAT
* *
48297257 AAACAAT-TATTTTAATTAATTTCAATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
64 AAACAATATATATTAA-TAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
*
48297321 AAGAATATAAT
128 AAAAATATAAT
48297332 T
1 T
48297333 CCTTTCTTAA
Statistics
Matches: 129, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
135 7 0.05
136 79 0.61
137 43 0.33
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (138 bp):
TAATATATGAATTTGATTCATACAAAATATTAATTGTATAATATTTACTGAATTTATTAATATAA
ACAATATATATTAATAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAA
AATATAAT
Done.