Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 142 of 295
Found at i:48299994 original size:45 final size:46
Alignment explanation
Indices: 48299939--48300112 Score: 185
Period size: 45 Copynumber: 3.8 Consensus size: 46
48299929 TGGTTGAGCA
*
48299939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * * *
48299985 TCC-AACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
*
48300031 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * *
48300076 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48300113 GCAGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
44 1 0.01
45 51 0.50
46 33 0.32
47 18 0.17
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:48300093 original size:92 final size:92
Alignment explanation
Indices: 48299936--48300105 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 92
48299926 GGATGGTTGA
* * *
48299936 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCAACTCATTGAGTT
48300001 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* *
48300028 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCC-AACTCATTGAGT
48300092 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
48300106 CTTATGGGCA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 24 0.33
92 48 0.67
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCAACTCATTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48301796 original size:20 final size:19
Alignment explanation
Indices: 48301773--48301814 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
48301763 GTTAATATTA
48301773 TTTATTTTAATTTAATTAAT
1 TTTATTTTAATTT-ATTAAT
*
48301793 TTTATTTTAATTTCTTAAT
1 TTTATTTTAATTTATTAAT
48301812 TTT
1 TTT
48301815 CAATGTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTTTAATTTATTAAT
Found at i:48400683 original size:42 final size:39
Alignment explanation
Indices: 48400545--48400806 Score: 304
Period size: 42 Copynumber: 6.6 Consensus size: 39
48400535 ACATTGGATT
*
48400545 ATATCCCGGGCTAAGACCTGAAGGCAA-TATGCGAG-TGA
1 ATAT-CCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
48400583 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-AGTTGA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
48400621 ATATCCGGGCTCAAGACCCGAAGGCAATTATGCGAGTTGAA
1 ATATCCGGGCT-AAGACCCGAAGGCAATTATGCGAGTTG-A
48400662 CATATCCGGGCTAAGACCCCGAAGGCAATTATGCGAGTTGA
1 -ATATCCGGGCTAAGA-CCCGAAGGCAATTATGCGAGTTGA
* * * *
48400703 TTATCTGGGCTATGACCCGAAGGC-ATTATGCTG-GATGA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-GAGTTGA
48400741 TATATCCGGGCTAAATGA-CCGAAGGCAATTCAT-CGAGTTGA
1 -ATATCCGGGCT-AA-GACCCGAAGGCAATT-ATGCGAGTTGA
*
48400782 ATATGTCCGGCGTTAAGACCCGAAG
1 ATA--TCCGG-GCTAAGACCCGAAG
48400807 CAGATGTGTT
Statistics
Matches: 196, Mismatches: 10, Indels: 32
0.82 0.04 0.13
Matches are distributed among these distances:
37 23 0.12
38 34 0.17
39 40 0.20
40 30 0.15
41 18 0.09
42 49 0.25
43 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:48400720 original size:81 final size:77
Alignment explanation
Indices: 48400545--48400806 Score: 302
Period size: 81 Copynumber: 3.3 Consensus size: 77
48400535 ACATTGGATT
*
48400545 ATATCCCGGGCTAAGACCTGAAGGCAA-TATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAA
1 ATAT-CCGGGCTAAGACCCGAAGGCAATTATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAA
48400609 TTATGC-AGTTGA
65 TTATGCGAGTTGA
48400621 ATATCCGGGCTCAAGACCCGAAGGCAATTATGCGAGTTGAACATATCCGGGCTAAGACCCCGAAG
1 ATATCCGGGCT-AAGACCCGAAGGCAATTATGCGAG-TG-A-ATATCCGGGCTAAGA-CCCGAAG
48400686 GCAATTATGCGAGTTGA
61 GCAATTATGCGAGTTGA
* * *
48400703 TTATCTGGGCTATGACCCGAAGGC-ATTATGCTG-GATGATATATCCGGGCTAAATGA-CCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-GAG-TGA-ATATCCGGGCT-AA-GACCCGAAG
48400765 GCAATTCAT-CGAGTTGA
61 GCAATT-ATGCGAGTTGA
*
48400782 ATATGTCCGGCGTTAAGACCCGAAG
1 ATA--TCCGG-GCTAAGACCCGAAG
48400807 CAGATGTGTT
Statistics
Matches: 162, Mismatches: 10, Indels: 22
0.84 0.05 0.11
Matches are distributed among these distances:
75 7 0.04
76 18 0.11
77 8 0.05
78 2 0.01
79 35 0.22
80 29 0.18
81 36 0.22
82 27 0.17
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (77 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAAT
TATGCGAGTTGA
Found at i:48400765 original size:121 final size:117
Alignment explanation
Indices: 48400545--48400806 Score: 332
Period size: 121 Copynumber: 2.2 Consensus size: 117
48400535 ACATTGGATT
*
48400545 ATATCCCGGGCTAAGACCTGAAGGCAATATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAAT
1 ATAT-CCGGGCTAAGACCCGAAGGCAATATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAAT
* *
48400610 TATGCAGTTGAATATCCGGGCTCAAGACCCGAAGGCAATT-ATGCGAGTTGAAC
65 TATGCAGATGAATATCCGGGCTAAAGACCCGAAGGCAATTCAT-CGAGTTGAAC
* * *
48400663 ATATCCGGGCTAAGACCCCGAAGGCAATTATGCGAGTTGATTATCTGGGCTATGACCCGAAGGC-
1 ATATCCGGGCTAAGA-CCCGAAGGCAA-TATGCGAG-TGAATATCCGGGCTAAGACCCGAAGGCA
* *
48400727 ATTATGCTGGATGATATATCCGGGCTAAATGA-CCGAAGGCAATTCATCGAGTTGAAT
63 ATTATGC-AGATGA-ATATCCGGGCTAAA-GACCCGAAGGCAATTCATCGAGTTGAAC
* *
48400784 ATGTCCGGCGTTAAGACCCGAAG
1 ATATCCGG-GCTAAGACCCGAAG
48400807 CAGATGTGTT
Statistics
Matches: 126, Mismatches: 10, Indels: 13
0.85 0.07 0.09
Matches are distributed among these distances:
117 11 0.09
118 14 0.11
119 15 0.12
120 28 0.22
121 48 0.38
122 10 0.08
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (117 bp):
ATATCCGGGCTAAGACCCGAAGGCAATATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCAATT
ATGCAGATGAATATCCGGGCTAAAGACCCGAAGGCAATTCATCGAGTTGAAC
Found at i:48402436 original size:310 final size:307
Alignment explanation
Indices: 48401849--48402463 Score: 780
Period size: 310 Copynumber: 2.0 Consensus size: 307
48401839 CGGCATCAGT
* * *
48401849 ATTGAAGCTCTGTGCAGAGAGATATCAAGTCGTAATGGGAAGAGGTCAGTGTAGTCGACCCCTGA
1 ATTGAAGCCCTGTACAGAGAGATATCAAGTCGTAATGCGAAGAGGTCAGTGTAGTCGACCCCTGA
* *
48401914 CATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTTAGAAAAAAAATCAT
66 CATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCAACAAAAAATTTAGAAAAAAAATCAT
* * * *
48401979 AGGTGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAA
131 AGATGGGACATAAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTCCGAGTTCTGAAACTCAA
* *
48402044 GATATGATTTTTGAAGCGACTAGTACTCAGATGGGCAGTGTCTGGAAAAAATTTTAAAAGTCTGT
196 GATATGATTTTTAAAGCGACTAGTACGCAGATGGGCAGTGTCTGGAAAAAATTTTAAAAGTCTGT
*
48402109 CAAGACTCGTATTCGACTCCGGTGACGGTCTC-GGTTCGGGGTGTTATA
261 CAACACTCGTATTCGACTCC-GTGACGGTCTCGGGTTC-GGGTGTTATA
* *
48402157 ATTGAAGCCCTGTACAGGGAGATATCCAAGTCGTAATGCGAA-AGGTCAGTGTAGTCGATCCCTG
1 ATTGAAGCCCTGTACAGAGAGATAT-CAAGTCGTAATGCGAAGAGGTCAGTGTAGTCGA-CCC-C
* * * * *
48402221 TAGACATGGGAGACTTTTACTAATAAACTGTACTAATTTGCCCAACAAAAAATTCTGGAAAACAT
63 T-GACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCAACAAAAAATT-TAGAAAAAAA
* * * **
48402286 AT-GTAGAT-GGA-ATTAAGATCTAG-TTCAGGGAAAATTTACGGAACTGGA-TTCCGAGATTCT
126 ATCATAGATGGGACA-TAAG-TCTAGTTTCAGGGAAAAATCACAAAACT-GATTTCCGAG-TTCT
* **
48402346 G-AACTCAAGATATGATTTTTAAAGCGACTAGTACGCAGATTGGCAGTGTCTGGGAAATTATTTT
187 GAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAGATGGGCAGTGTCT-GGAAAAAATTTT
* * * *
48402410 TAAAGTCTGTTAACAC-CTTGTTCGACTCCGTGACGGTCTCGGGTTCGGGTGTTA
251 AAAAGTCTGTCAACACTCGTATTCGACTCCGTGACGGTCTCGGGTTCGGGTGTTA
48402464 CATTTTGATT
Statistics
Matches: 265, Mismatches: 31, Indels: 21
0.84 0.10 0.07
Matches are distributed among these distances:
308 38 0.14
309 38 0.14
310 94 0.35
311 86 0.32
312 9 0.03
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (307 bp):
ATTGAAGCCCTGTACAGAGAGATATCAAGTCGTAATGCGAAGAGGTCAGTGTAGTCGACCCCTGA
CATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCAACAAAAAATTTAGAAAAAAAATCAT
AGATGGGACATAAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTCCGAGTTCTGAAACTCAA
GATATGATTTTTAAAGCGACTAGTACGCAGATGGGCAGTGTCTGGAAAAAATTTTAAAAGTCTGT
CAACACTCGTATTCGACTCCGTGACGGTCTCGGGTTCGGGTGTTATA
Found at i:48407396 original size:39 final size:40
Alignment explanation
Indices: 48407295--48407479 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
48407285 TTGAATGATG
* * * *
48407295 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGC-GAGTTACTAAT
* *
48407334 ATCCGGACTAAGAT-CCGAAGGCATTTGCGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGCGCGAGTTACTAAT
*
48407375 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTAAT
* * * *
48407414 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTAAT
* *
48407453 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48407480 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTAAT
Found at i:48407501 original size:79 final size:79
Alignment explanation
Indices: 48407348--48407512 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
48407338 GGACTAAGAT
* * **
48407348 CCGAAGGCATTTGCGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
48407413 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
48407427 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGCGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
48407490 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
48407506 CCGAAGG
1 CCGAAGG
48407513 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:48412639 original size:7 final size:7
Alignment explanation
Indices: 48412629--48412653 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
48412619 GATTGATTGT
48412629 TGAGTGA
1 TGAGTGA
48412636 TGAGTGA
1 TGAGTGA
48412643 TGAGTGA
1 TGAGTGA
48412650 TGAG
1 TGAG
48412654 GGATTAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.44, T:0.28
Consensus pattern (7 bp):
TGAGTGA
Found at i:48415874 original size:40 final size:40
Alignment explanation
Indices: 48415817--48416081 Score: 329
Period size: 40 Copynumber: 6.7 Consensus size: 40
48415807 CTAACGGGGT
* * * *
48415817 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
48415857 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
48415897 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
48415937 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
48415977 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * * *
48416017 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
48416057 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
48416082 GGTTATATCC
Statistics
Matches: 198, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.05
40 188 0.95
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:48420712 original size:24 final size:24
Alignment explanation
Indices: 48420685--48420742 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
48420675 TGAGAACTTC
*
48420685 AACTGACCTAGGTCTGAGGACGAT
1 AACTGCCCTAGGTCTGAGGACGAT
*
48420709 AACTGCCCTAGGTTTGAGGACGAT
1 AACTGCCCTAGGTCTGAGGACGAT
48420733 AACTGCCCTA
1 AACTGCCCTA
48420743 AATCTATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (24 bp):
AACTGCCCTAGGTCTGAGGACGAT
Found at i:48421554 original size:19 final size:21
Alignment explanation
Indices: 48421532--48421573 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
48421522 AGGTAAGAAG
*
48421532 TTTTGGTT-AATTCTTG-AAA
1 TTTTAGTTAAATTCTTGTAAA
48421551 TTTTAGTTAAATTCTTGTAAA
1 TTTTAGTTAAATTCTTGTAAA
48421572 TT
1 TT
48421574 ACTAAGTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTTAGTTAAATTCTTGTAAA
Found at i:48422959 original size:40 final size:40
Alignment explanation
Indices: 48422904--48423021 Score: 218
Period size: 40 Copynumber: 3.0 Consensus size: 40
48422894 TGGAAAAAAA
48422904 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
48422944 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
48422984 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
48423022 GTTACATCCG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:48431260 original size:38 final size:40
Alignment explanation
Indices: 48431196--48431311 Score: 200
Period size: 38 Copynumber: 3.0 Consensus size: 40
48431186 TGGAAAAAAA
48431196 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
48431236 TATAACC-GGTTAAGT-CCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
48431274 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
48431312 GTTACATCCG
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
38 30 0.42
39 16 0.22
40 26 0.36
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:48435073 original size:19 final size:19
Alignment explanation
Indices: 48435051--48435105 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
48435041 TAGTGGAAAT
48435051 AGAGGCACCAAGTGCAAAC
1 AGAGGCACCAAGTGCAAAC
*
48435070 AGAGGCATCAAAGTGCAAAC
1 AGAGGCA-CCAAGTGCAAAC
*
48435090 AAAGGCACCGAAGTGC
1 AGAGGCACC-AAGTGC
48435106 GATCTCATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.42, C:0.24, G:0.27, T:0.07
Consensus pattern (19 bp):
AGAGGCACCAAGTGCAAAC
Found at i:48435085 original size:20 final size:20
Alignment explanation
Indices: 48435009--48435096 Score: 72
Period size: 20 Copynumber: 4.4 Consensus size: 20
48434999 CAAAACACAT
*
48435009 CAGAGAGCATCGAAA-TGCTAA
1 CAGAG-GCATC-AAAGTGCAAA
* ** *
48435030 CAGAGACATCGTAGTGGAAA
1 CAGAGGCATCAAAGTGCAAA
* *
48435050 TAGAGGCA-CCAAGTGCAAA
1 CAGAGGCATCAAAGTGCAAA
48435069 CAGAGGCATCAAAGTGCAAA
1 CAGAGGCATCAAAGTGCAAA
*
48435089 CAAAGGCA
1 CAGAGGCA
48435097 CCGAAGTGCG
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
19 16 0.31
20 31 0.60
21 5 0.10
ACGTcount: A:0.43, C:0.19, G:0.26, T:0.11
Consensus pattern (20 bp):
CAGAGGCATCAAAGTGCAAA
Found at i:48443885 original size:47 final size:47
Alignment explanation
Indices: 48443832--48444026 Score: 336
Period size: 47 Copynumber: 4.1 Consensus size: 47
48443822 TTAGGATTTT
48443832 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
48443879 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
48443926 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
** * * *
48443973 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
48444020 AATGTGA
1 AATGTGA
48444027 AATGTGTATG
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 141 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:48444133 original size:46 final size:46
Alignment explanation
Indices: 48443997--48444133 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
48443987 GAACATGTAT
* * *
48443997 ATATGTGGTAAGGCCGAATGGCTAATGTGAAATGTGTATGAGTTAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * * *
48444043 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
48444089 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
48444134 TGTATATATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:48446029 original size:46 final size:46
Alignment explanation
Indices: 48445979--48446107 Score: 224
Period size: 46 Copynumber: 2.8 Consensus size: 46
48445969 TGATTGAGCA
48445979 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
48446025 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
48446071 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48446108 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 2 0.03
46 78 0.98
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48448682 original size:23 final size:23
Alignment explanation
Indices: 48448639--48448682 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
48448629 CATCATAATA
*
48448639 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
48448662 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
48448683 CCAAATCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:48449379 original size:40 final size:43
Alignment explanation
Indices: 48449288--48449383 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 43
48449278 AGCTATAATG
*
48449288 ATATCGCACACTTAGTGTCAACACATTAAACCAAAACTATCTCA
1 ATATCGCACACTTAGTGTC-ACACATTAAAACAAAACTATCTCA
* *
48449332 GTATCGCACACTTAGTG-C-CACA-TAAAACAAAAGCTATTTCA
1 ATATCGCACACTTAGTGTCACACATTAAAACAAAA-CTATCTCA
48449373 AT-TCGCACACT
1 ATATCGCACACT
48449384 AAGTTTTGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 18 0.38
41 12 0.26
43 1 0.02
44 16 0.34
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.25
Consensus pattern (43 bp):
ATATCGCACACTTAGTGTCACACATTAAAACAAAACTATCTCA
Found at i:48450558 original size:21 final size:20
Alignment explanation
Indices: 48450527--48450566 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
48450517 CTCTTGAAAC
*
48450527 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
48450547 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
48450567 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:48455850 original size:119 final size:120
Alignment explanation
Indices: 48455674--48455889 Score: 330
Period size: 119 Copynumber: 1.8 Consensus size: 120
48455664 TACTCGTTCA
* * *
48455674 AATGCCTTCGGGACATAGCGCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
*
48455739 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
*
48455794 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
* *
48455857 TATGGTCACTTAGCACAAAGCCTTCGGGACTTA
65 TATAGTAACTTAGCACAAAGCCTTCGGGACTTA
48455890 GCCCGGACAT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
118 1 0.01
119 66 0.76
120 20 0.23
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:48455880 original size:79 final size:79
Alignment explanation
Indices: 48455672--48455896 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
48455662 GCTACTCGTT
* * * * * * * *
48455672 CAAATGCCTTCGGGACATAGCGCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAA-GCCTTCGG-GCTTAGCCCGG
*
48455737 -TTATAGTAACTCGCA
64 AATATAGTAACTCGCA
* * *
48455752 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCA-CAAAGCCTTCGGGCTTAGCCCGGA
48455817 AT-TAGTAACTCGCA
65 ATATAGTAACTCGCA
** * * *
48455831 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACAAAGCCTTCGGG-CTTAGCCCG
48455895 GA
63 GA
48455897 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.02
79 58 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAAGCCTTCGGGCTTAGCCCGGAA
TATAGTAACTCGCA
Found at i:48455896 original size:40 final size:40
Alignment explanation
Indices: 48455653--48455896 Score: 266
Period size: 40 Copynumber: 6.1 Consensus size: 40
48455643 CGGAATTTAA
** *
48455653 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48455693 GCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
48455733 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48455773 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48455812 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48455852 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48455892 CCGGA
1 CCGGA
48455897 CATCATTCAA
Statistics
Matches: 173, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 35 0.20
40 121 0.70
41 15 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48461929 original size:16 final size:16
Alignment explanation
Indices: 48461899--48461931 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
48461889 TGTCGAAATC
*
48461899 CTGAAATACCGAAAAG
1 CTGAAATACCAAAAAG
48461915 CTGAAATACCAAAAAG
1 CTGAAATACCAAAAAG
48461931 C
1 C
48461932 CAAAAGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.21, G:0.15, T:0.12
Consensus pattern (16 bp):
CTGAAATACCAAAAAG
Found at i:48462197 original size:28 final size:28
Alignment explanation
Indices: 48462153--48462223 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
48462143 CATGACTATG
*
48462153 AATGTCATTGGGCCTGATGGGCCATATA
1 AATGTGATTGGGCCTGATGGGCCATATA
* *
48462181 AATGTGATTGGGGCTGATGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATA
* *
48462209 AATGAGATTCGGCCT
1 AATGTGATTGGGCCT
48462224 AAAAGGGCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTGATGGGCCATATA
Found at i:48469763 original size:28 final size:28
Alignment explanation
Indices: 48469730--48469804 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
48469720 ATTGCATGAC
*
48469730 TATGAATGTGATTAGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
48469758 TATGAATGTGATTGGGGCC-GATGGGCCA
1 TATGAATGTGATT-GGGCCTGATGGGCCA
*
48469786 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
48469805 AAAGGGGACA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
27 5 0.12
28 34 0.79
29 4 0.09
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:48470873 original size:17 final size:18
Alignment explanation
Indices: 48470840--48470873 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
48470830 TCTTTTGAAG
48470840 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
48470858 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
48470874 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:48476396 original size:40 final size:40
Alignment explanation
Indices: 48476312--48476412 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
48476302 AAAATCCTTG
*
48476312 TTATAATTATTGTAATTATAA--TTTACAATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTTACAATCAAACATTA
* * * **
48476350 TCATAATTATTGTAATTGTAATTTTTTCGGTCAAACATTA
1 TTATAATTATTGTAATTATAATTTTTACAATCAAACATTA
*
48476390 TTATAATTATAGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
48476413 ATAAAATTCG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 19 0.37
40 33 0.63
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (40 bp):
TTATAATTATTGTAATTATAATTTTTACAATCAAACATTA
Found at i:48477281 original size:15 final size:15
Alignment explanation
Indices: 48477261--48477295 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
48477251 GCCTAAACCC
48477261 TAGGATTGATGACCT
1 TAGGATTGATGACCT
48477276 TAGGATTGATGACCT
1 TAGGATTGATGACCT
48477291 TAGGA
1 TAGGA
48477296 AGTAATCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.31
Consensus pattern (15 bp):
TAGGATTGATGACCT
Found at i:48482976 original size:30 final size:30
Alignment explanation
Indices: 48482901--48482958 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
48482891 TGAAAAATTA
48482901 GACTAAATTGAATATAATAGAAATAAGTTG
1 GACTAAATTGAATATAATAGAAATAAGTTG
48482931 GACTAAATTGAATATAATAGAAATAAGT
1 GACTAAATTGAATATAATAGAAATAAGT
48482959 ATGTTATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.29
Consensus pattern (30 bp):
GACTAAATTGAATATAATAGAAATAAGTTG
Found at i:48486534 original size:49 final size:49
Alignment explanation
Indices: 48486458--48486631 Score: 267
Period size: 49 Copynumber: 3.5 Consensus size: 49
48486448 TGAGGTCACG
48486458 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
* * ** * *
48486507 TGTATAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GGTCGCA
*
48486557 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
*
48486606 TGTGTAGTACTAAGTTCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
48486632 TGAGTACCAG
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
49 68 0.62
50 42 0.38
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
Found at i:48486626 original size:99 final size:99
Alignment explanation
Indices: 48486450--48486631 Score: 337
Period size: 99 Copynumber: 1.8 Consensus size: 99
48486440 ATCTATTGTG
*
48486450 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTATAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTATAGT
48486515 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
*
48486549 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTATAGT
*
48486614 ACTAAGTTCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
48486632 TGAGTACCAG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (99 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTATAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:48491442 original size:21 final size:21
Alignment explanation
Indices: 48491418--48491489 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
48491408 AGATTACAAT
48491418 GTTAATACTCCTATCAAATAA
1 GTTAATACTCCTATCAAATAA
* * *
48491439 GTTAATATTTC-AT-AGATTACAA
1 GTTAATACTCCTATCA-A--ATAA
48491461 TGTTAATACTCCTATCAAATAA
1 -GTTAATACTCCTATCAAATAA
48491483 GTTAATA
1 GTTAATA
48491490 TTTCATTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
19 1 0.03
20 3 0.08
21 16 0.41
22 6 0.15
23 9 0.23
24 3 0.08
25 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.38
Consensus pattern (21 bp):
GTTAATACTCCTATCAAATAA
Found at i:48491456 original size:44 final size:44
Alignment explanation
Indices: 48491406--48491495 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
48491396 TAATTATAAG
48491406 ATAGATTACAATGTTAATACTCCTATCAAATAAGTTAATATTTC
1 ATAGATTACAATGTTAATACTCCTATCAAATAAGTTAATATTTC
48491450 ATAGATTACAATGTTAATACTCCTATCAAATAAGTTAATATTTC
1 ATAGATTACAATGTTAATACTCCTATCAAATAAGTTAATATTTC
48491494 AT
1 AT
48491496 TATAACAAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (44 bp):
ATAGATTACAATGTTAATACTCCTATCAAATAAGTTAATATTTC
Found at i:48491505 original size:21 final size:21
Alignment explanation
Indices: 48491437--48491505 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
48491427 CCTATCAAAT
* *
48491437 AAGTTAATATTTCATAGATTAC
1 AAGTTAATATTTCAT-CATAAC
* * *
48491459 AATGTTAATACTCCTATCA-AAT
1 AA-GTTAATATTTC-ATCATAAC
*
48491481 AAGTTAATATTTCATTATAAC
1 AAGTTAATATTTCATCATAAC
48491502 AAGT
1 AAGT
48491506 GTGTGGGTTG
Statistics
Matches: 35, Mismatches: 9, Indels: 7
0.69 0.18 0.14
Matches are distributed among these distances:
20 3 0.09
21 15 0.43
22 5 0.14
23 10 0.29
24 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (21 bp):
AAGTTAATATTTCATCATAAC
Found at i:48492462 original size:27 final size:28
Alignment explanation
Indices: 48492432--48492490 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
48492422 AATTTAATAT
48492432 TTATAAAAAATTC-AAAAAATAAAAAAA
1 TTATAAAAAATTCAAAAAAATAAAAAAA
* *
48492459 TTATAAAAAGTTCATAAAAAATCAAAAAA
1 TTATAAAAAATTCA-AAAAAATAAAAAAA
48492488 TTA
1 TTA
48492491 GTATGAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 12 0.43
29 16 0.57
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (28 bp):
TTATAAAAAATTCAAAAAAATAAAAAAA
Found at i:48492636 original size:32 final size:32
Alignment explanation
Indices: 48492579--48492639 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
48492569 TAACAAATTA
* *
48492579 ATTTTTTTAAAAGATTGAGAATCAAATTTGAT
1 ATTTTTTTAAAAAATTAAGAATCAAATTTGAT
* *
48492611 ATTTTTTTAAAAAATTAATAGTCAAATTT
1 ATTTTTTTAAAAAATTAAGAATCAAATTT
48492640 AAAATAGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (32 bp):
ATTTTTTTAAAAAATTAAGAATCAAATTTGAT
Found at i:48492647 original size:15 final size:15
Alignment explanation
Indices: 48492627--48492656 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48492617 TTAAAAAATT
48492627 AATAGTCAAATTTAA
1 AATAGTCAAATTTAA
48492642 AATAGTCAAATTTAA
1 AATAGTCAAATTTAA
48492657 CTAAAAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAGTCAAATTTAA
Found at i:48495578 original size:20 final size:21
Alignment explanation
Indices: 48495532--48495584 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
48495522 TACTAATTAC
48495532 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
48495553 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
48495573 ATATATTCTAAT
1 AAATATT-TAAT
48495585 TAAATTTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:48495869 original size:26 final size:27
Alignment explanation
Indices: 48495831--48495893 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
48495821 TTAAATCAAA
*
48495831 TTTTTCAAAAGTAC-TTCTCAAAAGCAC
1 TTTTTCAAAAGTACTTTC-CAAAAACAC
*
48495858 TTTTTC-ACAGTACTTTCCAAAAACAC
1 TTTTTCAAAAGTACTTTCCAAAAACAC
48495884 -TTTTCAAAAG
1 TTTTTCAAAAG
48495894 CATTGCCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 5 0.16
26 17 0.55
27 9 0.29
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (27 bp):
TTTTTCAAAAGTACTTTCCAAAAACAC
Found at i:48502206 original size:15 final size:15
Alignment explanation
Indices: 48502160--48502209 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
48502150 ATAACATAAT
*
48502160 AATATAAATGACTAA
1 AATATAAATGATTAA
* *
48502175 AACAT-AAT-ATTTTA
1 AATATAAATGA-TTAA
48502189 AATATAAATGATTAA
1 AATATAAATGATTAA
48502204 AATATA
1 AATATA
48502210 TCTTAAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
13 1 0.04
14 9 0.33
15 16 0.59
16 1 0.04
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (15 bp):
AATATAAATGATTAA
Found at i:48502384 original size:13 final size:14
Alignment explanation
Indices: 48502355--48502384 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48502345 CCCAACTTCG
*
48502355 AAAATTAATGTTAA
1 AAAATTAATGCTAA
48502369 AAAATTAATGCTAA
1 AAAATTAATGCTAA
48502383 AA
1 AA
48502385 TTTAGCTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (14 bp):
AAAATTAATGCTAA
Found at i:48503092 original size:28 final size:27
Alignment explanation
Indices: 48503044--48503097 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
48503034 TATAATATTT
*
48503044 AAAAATTTTAAAAATCCAAAATATAAA
1 AAAAATTTTAAAAATCCAAAAAATAAA
*
48503071 AAAAACTTTATAAAAAT-GAAAAAATAA
1 AAAAA-TTT-TAAAAATCCAAAAAATAA
48503098 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 5 0.22
28 11 0.48
29 7 0.30
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (27 bp):
AAAAATTTTAAAAATCCAAAAAATAAA
Found at i:48503093 original size:22 final size:21
Alignment explanation
Indices: 48503068--48503108 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
48503058 TCCAAAATAT
48503068 AAAAAAAACTTTATAAAAATGA
1 AAAAAAAACTTTA-AAAAATGA
* *
48503090 AAAAATAATTTTAAAAAAT
1 AAAAAAAACTTTAAAAAAT
48503109 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAAAAAACTTTAAAAAATGA
Found at i:48503104 original size:20 final size:21
Alignment explanation
Indices: 48503068--48503108 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48503058 TCCAAAATAT
48503068 AAAAAAAACTTTATAAAAATG
1 AAAAAAAACTTTATAAAAATG
*
48503089 AAAAAATAATTTTA-AAAAAT
1 AAAAAA-AACTTTATAAAAAT
48503109 ATTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAAAAAACTTTATAAAAATG
Found at i:48503120 original size:12 final size:13
Alignment explanation
Indices: 48503089--48503119 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
48503079 TATAAAAATG
48503089 AAAAAATAATTTT
1 AAAAAATAATTTT
*
48503102 AAAAAATATTTTT
1 AAAAAATAATTTT
48503115 AAAAA
1 AAAAA
48503120 TTATAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAAATAATTTT
Found at i:48514264 original size:28 final size:28
Alignment explanation
Indices: 48514232--48514293 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
48514222 TACTAGAATG
*
48514232 CCCCTATGTATGCAAAATTACCATTATA
1 CCCCTATGTATGCAAAATGACCATTATA
*
48514260 CCCCTATGTATGCAAAATGACCTTTATA
1 CCCCTATGTATGCAAAATGACCATTATA
48514288 CCCCTA
1 CCCCTA
48514294 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCCTATGTATGCAAAATGACCATTATA
Found at i:48514461 original size:27 final size:28
Alignment explanation
Indices: 48514399--48514488 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
48514389 AGGAAGCGTC
* * *
48514399 CTGGTGGCTA-TGCCACAAATTTTTTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
48514427 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
48514454 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
48514483 CTGGTG
1 CTGGTG
48514489 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 21 0.42
28 22 0.44
29 7 0.14
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.34
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:48514499 original size:29 final size:28
Alignment explanation
Indices: 48514409--48514499 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 28
48514399 CTGGTGGCTA
* * * * *
48514409 TGCCACAAATTTTTTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
48514437 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
48514464 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
48514493 TGTCACA
1 TGCCACA
48514500 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 21 0.42
28 14 0.28
29 15 0.30
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:48522366 original size:23 final size:22
Alignment explanation
Indices: 48522324--48522379 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
48522314 AAGTTGATAG
* ** *
48522324 ATAGTAAGCTCTATTGAGCTGA
1 ATAGGAAGCTCTATCAAGCTAA
48522346 ATCAGGAAGCTCTATCAAGCTAA
1 AT-AGGAAGCTCTATCAAGCTAA
*
48522369 ATAGTAAGCTC
1 ATAGGAAGCTC
48522380 ATACGAGCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (22 bp):
ATAGGAAGCTCTATCAAGCTAA
Found at i:48522401 original size:24 final size:26
Alignment explanation
Indices: 48522371--48522438 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 26
48522361 CAAGCTAAAT
48522371 AGTAAGCTCATACGAGCTAAG-A-A-C
1 AGTAAGCTCATACGAGCT-AGTATATC
* *
48522395 AGTAAGCTCTTACGAGCTGGTATATC
1 AGTAAGCTCATACGAGCTAGTATATC
*
48522421 AGTAAGCCCATACGAGCT
1 AGTAAGCTCATACGAGCT
48522439 GTGGTGAGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 18 0.49
25 1 0.03
26 17 0.46
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
AGTAAGCTCATACGAGCTAGTATATC
Found at i:48528240 original size:15 final size:15
Alignment explanation
Indices: 48528220--48528258 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
48528210 TTAGGGAAGG
*
48528220 GAATGATCCTGGTTT
1 GAATGATCCTGGTCT
*
48528235 GAATGATCTTGGTCT
1 GAATGATCCTGGTCT
48528250 GAATGATCC
1 GAATGATCC
48528259 ATTGAATCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (15 bp):
GAATGATCCTGGTCT
Found at i:48538668 original size:8 final size:8
Alignment explanation
Indices: 48538655--48538687 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
48538645 TTAGAGTTGG
48538655 CCCTAAAA
1 CCCTAAAA
48538663 CCCTAAAA
1 CCCTAAAA
48538671 CCCTAAAA
1 CCCTAAAA
48538679 CCCTAAAA
1 CCCTAAAA
48538687 C
1 C
48538688 TATGGCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.12
Consensus pattern (8 bp):
CCCTAAAA
Found at i:48544861 original size:8 final size:9
Alignment explanation
Indices: 48544843--48544880 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
48544833 TATTAATTAT
48544843 AAAAGGTTA
1 AAAAGGTTA
48544852 AAAAGG-TA
1 AAAAGGTTA
48544860 AAATAGGTTA
1 AAA-AGGTTA
48544870 AAAAGG-TA
1 AAAAGGTTA
48544878 AAA
1 AAA
48544881 TATGAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 10 0.37
9 12 0.44
10 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.21, T:0.18
Consensus pattern (9 bp):
AAAAGGTTA
Found at i:48544869 original size:18 final size:18
Alignment explanation
Indices: 48544846--48544882 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
48544836 TAATTATAAA
48544846 AGGTTAAAAAGGTAAAAT
1 AGGTTAAAAAGGTAAAAT
48544864 AGGTTAAAAAGGTAAAAT
1 AGGTTAAAAAGGTAAAAT
48544882 A
1 A
48544883 TGAAATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.22
Consensus pattern (18 bp):
AGGTTAAAAAGGTAAAAT
Found at i:48548005 original size:43 final size:43
Alignment explanation
Indices: 48547913--48548024 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
48547903 TTGATGTCAC
* * *
48547913 TGTCCTAGACAAGGTCTTACACG-AGTTATAATACAATGCCAA
1 TGTCCTAGACATGGTCTTACACGTAATGATAATACAATGCCAA
* * *
48547955 TGCCCTAGACTTGGTCTTACACGTAATGATAATAGAATGCCAA
1 TGTCCTAGACATGGTCTTACACGTAATGATAATACAATGCCAA
*
48547998 TGTCCTAGACATGGTCTTACATGTAAT
1 TGTCCTAGACATGGTCTTACACGTAAT
48548025 CACATCTCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 20 0.33
43 40 0.67
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (43 bp):
TGTCCTAGACATGGTCTTACACGTAATGATAATACAATGCCAA
Found at i:48551713 original size:42 final size:42
Alignment explanation
Indices: 48551665--48551756 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
48551655 CGTGTCTAGG
* * * * *
48551665 CCGTGTGAGGGATATGGGCCAAGGACATGGGCGTGTGCTCGA
1 CCGTGTGAGGGACACGGGCCAAGGACACGGGCATGTGATCGA
*
48551707 CCGTGTGAGGGACACGGGCCAAGGACACGGGCATGTGATCGG
1 CCGTGTGAGGGACACGGGCCAAGGACACGGGCATGTGATCGA
48551749 CCGTGTGA
1 CCGTGTGA
48551757 AAACCCCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.20, C:0.22, G:0.42, T:0.16
Consensus pattern (42 bp):
CCGTGTGAGGGACACGGGCCAAGGACACGGGCATGTGATCGA
Found at i:48553634 original size:39 final size:40
Alignment explanation
Indices: 48553520--48553705 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
48553510 GCTACTCCCT
* * * *
48553520 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
48553560 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
48553600 CCAACGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
48553639 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
48553680 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48553706 TATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 60 0.49
41 25 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:48553664 original size:79 final size:81
Alignment explanation
Indices: 48553520--48553705 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
48553510 GCTACTCCCT
* * * * *
48553520 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCGCAAATGCCTTCGGGACTTAACCCG
1 CAAAAGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
48553584 GATTTAGTAAC-TCGCT
65 GATATAGTAACTTAGCA
* * **
48553600 CCAACGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
48553663 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
48553680 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAAGCCTTCGGGACTTAGCCCGGA
48553706 TATCATTCGA
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 3 0.03
79 46 0.52
80 28 0.32
81 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:48563312 original size:68 final size:68
Alignment explanation
Indices: 48563163--48563320 Score: 153
Period size: 68 Copynumber: 2.3 Consensus size: 68
48563153 CTAGCCGATT
* * * *
48563163 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
48563228 TTTA
65 TATA
* * *
48563232 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
48563294 CTATATA
63 C-ATATA
48563301 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
48563321 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 8 0.11
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ATA
Found at i:48566077 original size:16 final size:15
Alignment explanation
Indices: 48566056--48566089 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
48566046 TAGATCGGCA
48566056 AAAGTCGAAATGCCAG
1 AAAGTCGAAATGCC-G
48566072 AAAGTCGAAATGCCG
1 AAAGTCGAAATGCCG
48566087 AAA
1 AAA
48566090 AGCTGAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (15 bp):
AAAGTCGAAATGCCG
Found at i:48566091 original size:16 final size:15
Alignment explanation
Indices: 48566054--48566091 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
48566044 AGTAGATCGG
48566054 CAAAAGTCGAAATGC
1 CAAAAGTCGAAATGC
48566069 CAGAAAGTCGAAATGC
1 CA-AAAGTCGAAATGC
48566085 CGAAAAG
1 C-AAAAG
48566092 CTGAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.10
16 18 0.86
17 1 0.05
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.11
Consensus pattern (15 bp):
CAAAAGTCGAAATGC
Found at i:48566359 original size:28 final size:28
Alignment explanation
Indices: 48566311--48566393 Score: 114
Period size: 28 Copynumber: 2.9 Consensus size: 28
48566301 AGCATGACTG
48566311 TAAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCACA
*
48566340 TAAATGTGATTGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCACA
* *
48566368 TGAAA-GAGATTGGGCCTAGTGGGCCA
1 T-AAATGTGATTGGGCCTAATGGGCCA
48566394 TATATAAAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
28 38 0.76
29 12 0.24
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCACA
Found at i:48570827 original size:28 final size:29
Alignment explanation
Indices: 48570758--48570872 Score: 130
Period size: 28 Copynumber: 4.1 Consensus size: 29
48570748 AGCATGACTG
* *
48570758 TAAATGTGATTTGGGCCTAGT-GACCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * *
48570786 TGAATATGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
48570815 TAAATGTGA-TTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
48570843 TGAAA-GAGA-TTGGGCCTAGTGGGCCATA
1 T-AAATGTGATTTGGGCCTAATGGGCCATA
48570871 TA
1 TA
48570873 TACAGGTATG
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 59 0.79
29 15 0.20
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:48570859 original size:56 final size:57
Alignment explanation
Indices: 48570758--48570868 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 57
48570748 AGCATGACTG
* *
48570758 TAAATGTGATTTGGGCCTAGTGACCATATGAATATGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGACCATATGAATATGAATTGGGCCTAATGGGCCACA
* *
48570815 TAAATGTGA-TTGGGCCTAATGGGCCATATGAA-A-GAGATTGGGCCTAGTGGGCCA
1 TAAATGTGATTTGGGCCTAAT-GACCATATGAATATGA-ATTGGGCCTAATGGGCCA
48570869 TATATACAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 2 0.04
56 27 0.56
57 19 0.40
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGACCATATGAATATGAATTGGGCCTAATGGGCCACA
Found at i:48571879 original size:70 final size:70
Alignment explanation
Indices: 48571792--48571931 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
48571782 TTATTGTTTG
*
48571792 GATTATTAAATTCGTGCGTTGTAATTATAAGAATTGGAACATGGATTTTCTAAGCTATAGTTTTC
1 GATTATTAAATTCGTGCGTTGTAATTATAAGAATTAGAACATGGATTTTCTAAGCTATAGTTTTC
48571857 TTTTA
66 TTTTA
48571862 GATTATTAAATTCGTGCGTTGTAATTATAAGAATTAGAACATGGATTTTCTAAGCTATAGTTTTC
1 GATTATTAAATTCGTGCGTTGTAATTATAAGAATTAGAACATGGATTTTCTAAGCTATAGTTTTC
48571927 TTTTA
66 TTTTA
48571932 ATACTACATT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (70 bp):
GATTATTAAATTCGTGCGTTGTAATTATAAGAATTAGAACATGGATTTTCTAAGCTATAGTTTTC
TTTTA
Found at i:48576415 original size:29 final size:28
Alignment explanation
Indices: 48576378--48576485 Score: 117
Period size: 29 Copynumber: 3.8 Consensus size: 28
48576368 CCGTCTCATG
48576378 CATATGGCCCATCAGGCCCAATTCACAT
1 CATATGGCCCATCAGGCCCAATTCACAT
*
48576406 CAATATGGCCCATCAGGCCCAATTCATATT
1 C-ATATGGCCCATCAGGCCCAATTCACA-T
* * * *
48576436 CATATGGCCTATTAGGCCCAAATCACTTT
1 CATATGGCCCATCAGGCCCAATTCAC-AT
* * *
48576465 TATATGGCCCGTTAGGCCCAA
1 CATATGGCCCATCAGGCCCAA
48576486 ACCACTTTAT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.01
29 65 0.96
30 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACAT
Found at i:48576486 original size:29 final size:29
Alignment explanation
Indices: 48576379--48576497 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 29
48576369 CGTCTCATGC
* * **
48576379 ATATGGCCCATCAGGCCCAATTCACATCA
1 ATATGGCCCATCAGGCCCAAATCACTTTT
* *
48576408 ATATGGCCCATCAGGCCCAATTCA-TATTC
1 ATATGGCCCATCAGGCCCAAATCACT-TTT
* *
48576437 ATATGGCCTATTAGGCCCAAATCACTTTT
1 ATATGGCCCATCAGGCCCAAATCACTTTT
* * *
48576466 ATATGGCCCGTTAGGCCCAAACCAC-TTT
1 ATATGGCCCATCAGGCCCAAATCACTTTT
48576494 ATAT
1 ATAT
48576498 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 7 0.09
29 70 0.90
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAAATCACTTTT
Found at i:48576740 original size:16 final size:16
Alignment explanation
Indices: 48576715--48576755 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
48576705 AAACTTTTAG
*
48576715 CTTTTTAGCATTTCAA
1 CTTTTCAGCATTTCAA
*
48576731 CTTTTCAGCATTTCGA
1 CTTTTCAGCATTTCAA
48576747 CTTTTCAGC
1 CTTTTCAGC
48576756 TTTTGTCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (16 bp):
CTTTTCAGCATTTCAA
Found at i:48579993 original size:74 final size:74
Alignment explanation
Indices: 48579873--48580058 Score: 228
Period size: 74 Copynumber: 2.5 Consensus size: 74
48579863 GCAATTTTTA
* * * **
48579873 TTGGTAAATCCAACTAGAGTTGGGCTCACTATTTATTCGTCAGTTTAACCGACTAGAACTGGGTG
1 TTGGTATATCCAACTAGAGCTGGGCTCACTATTTATTTGTCAGTTTAACCGACTAGAACTGGACG
48579938 TAAATACCG
66 TAAATACCG
* ** *** ***
48579947 TTGGTATATCCAACTAGAGCTGGGCTCACTATTTATTTTTTGGTTTATTGGACTAGTGTTGGACG
1 TTGGTATATCCAACTAGAGCTGGGCTCACTATTTATTTGTCAGTTTAACCGACTAGAACTGGACG
48580012 TAAATACCG
66 TAAATACCG
* *
48580021 TTGGTATATCCAACTAGAGCTAGGCTCACTAATTATTT
1 TTGGTATATCCAACTAGAGCTGGGCTCACTATTTATTT
48580059 ATCGAGTTAT
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
74 96 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.35
Consensus pattern (74 bp):
TTGGTATATCCAACTAGAGCTGGGCTCACTATTTATTTGTCAGTTTAACCGACTAGAACTGGACG
TAAATACCG
Found at i:48580312 original size:22 final size:21
Alignment explanation
Indices: 48580287--48580328 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
48580277 ACTTAAGTAT
48580287 ATATG-TATATATTCATTGAAAG
1 ATATGATATAT-TTC-TTGAAAG
48580309 ATATGATATATTTCTTGAAA
1 ATATGATATATTTCTTGAAA
48580329 TAAATTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (21 bp):
ATATGATATATTTCTTGAAAG
Found at i:48580319 original size:21 final size:22
Alignment explanation
Indices: 48580287--48580328 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
48580277 ACTTAAGTAT
48580287 ATATGTATATA-TTCATTGAAAG
1 ATATGTATATATTTC-TTGAAAG
48580309 ATATG-ATATATTTCTTGAAA
1 ATATGTATATATTTCTTGAAA
48580329 TAAATTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (22 bp):
ATATGTATATATTTCTTGAAAG
Found at i:48581420 original size:34 final size:34
Alignment explanation
Indices: 48581377--48581446 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
48581367 AAAAACCGTC
48581377 CAAATTGAAGACCAAGTCAACCCAAATTCGACTA
1 CAAATTGAAGACCAAGTCAACCCAAATTCGACTA
48581411 CAAATTGAAGACCAAGTCAACCCAAATTCGACTA
1 CAAATTGAAGACCAAGTCAACCCAAATTCGACTA
48581445 CA
1 CA
48581447 GATTTGCCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.44, C:0.27, G:0.11, T:0.17
Consensus pattern (34 bp):
CAAATTGAAGACCAAGTCAACCCAAATTCGACTA
Found at i:48584391 original size:29 final size:29
Alignment explanation
Indices: 48584358--48584431 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
48584348 TTATTCAAAT
* * *
48584358 GGCCCATTTGGCCCAATTAATATTCTTAC
1 GGCCCATTAGGCCCAATTAACATTCATAC
* * * *
48584387 GGCCCACTAGGCCCAATTCACCTTCATAT
1 GGCCCATTAGGCCCAATTAACATTCATAC
48584416 GGCCCATTAGGCCCAA
1 GGCCCATTAGGCCCAA
48584432 ATCATATTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
GGCCCATTAGGCCCAATTAACATTCATAC
Found at i:48584439 original size:58 final size:57
Alignment explanation
Indices: 48584331--48584439 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
48584321 CGTGCATATA
* * *
48584331 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAATTAATATTCTTACG
1 GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATAATATTCTTACG
* *
48584388 GCCCACTAGGCCCAAT-TCACCTTCATATGGCCCATTAGGCCCAAATCATATT
1 GCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATTAGGCCCAAATAATATT
48584440 ATACTCATGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 2 0.04
57 16 0.36
58 27 0.60
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATAATATTCTTACG
Found at i:48584687 original size:8 final size:8
Alignment explanation
Indices: 48584676--48584730 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
48584666 GGAATTTTGG
*
48584676 CTTTTCGC
1 CTTTTCGA
48584684 CTTTTCGA
1 CTTTTCGA
48584692 CTTTTCGA
1 CTTTTCGA
*
48584700 CATTTCGA
1 CTTTTCGA
48584708 CATTTT-GA
1 C-TTTTCGA
*
48584716 CATTTT-GG
1 C-TTTTCGA
48584724 CTTTTCG
1 CTTTTCG
48584731 GCATTCCGGC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 4 0.10
8 34 0.83
9 3 0.07
ACGTcount: A:0.13, C:0.24, G:0.15, T:0.49
Consensus pattern (8 bp):
CTTTTCGA
Found at i:48584695 original size:16 final size:16
Alignment explanation
Indices: 48584676--48584735 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
48584666 GGAATTTTGG
* *
48584676 CTTTTCGCCTTTTCGA
1 CTTTTCGACATTTCGA
48584692 CTTTTCGACATTTCGA
1 CTTTTCGACATTTCGA
* *
48584708 CATTTT-GACATTTTGG
1 C-TTTTCGACATTTCGA
*
48584724 CTTTTCGGCATT
1 CTTTTCGACATT
48584736 CCGGCTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 4 0.11
16 29 0.78
17 4 0.11
ACGTcount: A:0.13, C:0.23, G:0.15, T:0.48
Consensus pattern (16 bp):
CTTTTCGACATTTCGA
Found at i:48584729 original size:24 final size:24
Alignment explanation
Indices: 48584669--48584735 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
48584659 GTTTTTTGGA
*
48584669 ATTTTGGCTTTTCGCCTTTTCGAC
1 ATTTTGGCTTTTCGCATTTTCGAC
* *
48584693 -TTTTCGACATTTCGACATTTT-GAC
1 ATTTT-GGCTTTTCG-CATTTTCGAC
48584717 ATTTTGGCTTTTCGGCATT
1 ATTTTGGCTTTTC-GCATT
48584736 CCGGCTTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
23 4 0.12
24 20 0.59
25 10 0.29
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.49
Consensus pattern (24 bp):
ATTTTGGCTTTTCGCATTTTCGAC
Found at i:48598898 original size:14 final size:14
Alignment explanation
Indices: 48598879--48598908 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48598869 GTTTTAGCTC
48598879 ATAAATATGTGTTA
1 ATAAATATGTGTTA
*
48598893 ATAAATATGTTTTA
1 ATAAATATGTGTTA
48598907 AT
1 AT
48598909 CTGATTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (14 bp):
ATAAATATGTGTTA
Found at i:48603651 original size:43 final size:42
Alignment explanation
Indices: 48603583--48603742 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
48603573 AAGCTAGTAA
* * * * *
48603583 AATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATAT
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATAC
* **
48603625 AGATGCCACTATCCCAGACA-GAGTCTTACACAAAATCAAATAC
1 A-ATGCCAATATCCCAGACATG-GTCTTACACGTAATCAAATAC
*
48603668 AATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-C
1 AATGCCAATATCCCAGACATGGTCTTACACGT-AATCA-AA-TAC
* ** * *
48603712 GATGCCAACGTCCTAGACGTGGTCTTACACG
1 AATGCCAATATCCCAGACATGGTCTTACACG
48603743 AGAACACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 27 0.28
43 38 0.40
44 30 0.31
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
AATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATAC
Found at i:48606234 original size:28 final size:28
Alignment explanation
Indices: 48606193--48606271 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
48606183 GCAATCAAAT
* * *
48606193 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
48606221 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
48606249 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
48606272 CGAATGATCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:48608263 original size:28 final size:28
Alignment explanation
Indices: 48608231--48608327 Score: 122
Period size: 28 Copynumber: 3.5 Consensus size: 28
48608221 GTGAACATAG
* * *
48608231 GCACTATGTGTGTGAGTTCCGTAACTGA
1 GCACTATGTGTGCGAGTTCCATAACCGA
*
48608259 GCACTGTGTGTGCGAGTTCCATAACCGA
1 GCACTATGTGTGCGAGTTCCATAACCGA
* * *
48608287 GCACTTTGTGTGCGAGTTTCATAACCAA
1 GCACTATGTGTGCGAGTTCCATAACCGA
*
48608315 GCACTGTGTGTGC
1 GCACTATGTGTGC
48608328 AAGATCGGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCCATAACCGA
Found at i:48613362 original size:28 final size:28
Alignment explanation
Indices: 48613301--48613362 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
48613291 TCAGTGTACG
*
48613301 AAATATTGAGAATAGCACTTAGCGTGCG
1 AAATATTGAGAATAGCACTTAGCGTGCA
* *
48613329 AGATATTGAGAAT-GACACTTAGTGTGCA
1 AAATATTGAGAATAG-CACTTAGCGTGCA
48613357 AAATAT
1 AAATAT
48613363 CGAATGATCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (28 bp):
AAATATTGAGAATAGCACTTAGCGTGCA
Found at i:48622769 original size:94 final size:91
Alignment explanation
Indices: 48622606--48622782 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 91
48622596 ATAAGGTAAG
* * *
48622606 ATGCTGATGCCATGTCCAGACATGGTCTTATACTAGCTCATCTCGTAGCCGATGCATGTCCCAGA
1 ATGCCGATGCCATGTCCAGACATGGTCTTACACTAGCTCATCTCGTAGCCAATGCATGTCCCAGA
48622671 CATGTCTTACTCTAGCTCTCGTCTCA
66 CATGTCTTACTCTAGCTCTCGTCTCA
* * *
48622697 ATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCAATGCATGTCC
1 ATGCCGATGCCATGTC-CAGACATGGTCTTACACTAGCTCATC-T--CGTAGCCAATGCATGTCC
*
48622761 CAGACATGTCTTATTCTAGCTC
62 CAGACATGTCTTACTCTAGCTC
48622783 ACAATAACCC
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
91 17 0.23
92 22 0.29
94 36 0.48
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (91 bp):
ATGCCGATGCCATGTCCAGACATGGTCTTACACTAGCTCATCTCGTAGCCAATGCATGTCCCAGA
CATGTCTTACTCTAGCTCTCGTCTCA
Found at i:48623149 original size:30 final size:30
Alignment explanation
Indices: 48623111--48623194 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
48623101 CTATATTTGG
48623111 GCAAAATGACCATTTTGCCCCTAGACTTTT
1 GCAAAATGACCATTTTGCCCCTAGACTTTT
* *
48623141 GTAAAATGACCATTTTGCCCCTAAACTTTT
1 GCAAAATGACCATTTTGCCCCTAGACTTTT
*
48623171 GCAAAATGACCATTTTACCCCTAG
1 GCAAAATGACCATTTTGCCCCTAG
48623195 GTTCGAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (30 bp):
GCAAAATGACCATTTTGCCCCTAGACTTTT
Found at i:48625111 original size:14 final size:14
Alignment explanation
Indices: 48625092--48625121 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48625082 ACCCCTTCAT
*
48625092 TCCCTCATTCATCA
1 TCCCTCATCCATCA
48625106 TCCCTCATCCATCA
1 TCCCTCATCCATCA
48625120 TC
1 TC
48625122 ATTCTATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:48630072 original size:25 final size:24
Alignment explanation
Indices: 48630044--48630100 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
48630034 AGTTAGTAAT
48630044 AAAGAAATGGA-GAAAGAAAAAAGA
1 AAAGAAATGGATGAAA-AAAAAAGA
* *
48630068 GAAAGAAAAGGATGAAAACAAAAGA
1 -AAAGAAATGGATGAAAAAAAAAGA
48630093 AAA-AAATG
1 AAAGAAATG
48630101 TGTCCATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 4 0.14
24 3 0.11
25 17 0.61
26 4 0.14
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.05
Consensus pattern (24 bp):
AAAGAAATGGATGAAAAAAAAAGA
Found at i:48632122 original size:47 final size:47
Alignment explanation
Indices: 48632044--48632307 Score: 402
Period size: 47 Copynumber: 5.6 Consensus size: 47
48632034 TATTTGAATA
*
48632044 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
48632093 AATGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
48632140 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATC
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
48632187 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATC
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
48632234 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
48632281 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
48632308 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 189 0.94
49 11 0.05
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:48634052 original size:40 final size:40
Alignment explanation
Indices: 48633729--48634040 Score: 446
Period size: 40 Copynumber: 7.8 Consensus size: 40
48633719 GAGAATTGAG
* *
48633729 AGTGATATATCCGGGCTAAGTGCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48633769 AGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48633809 AGTGATATATCCGGGCTAAGTCCC-AAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAA-GAGCATTCGTGCT
* *
48633849 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48633889 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
48633929 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
48633969 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
48634009 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
48634041 ATCATGCTGG
Statistics
Matches: 248, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 245 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:48638269 original size:27 final size:26
Alignment explanation
Indices: 48638239--48638300 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
48638229 ATTTACTAAA
* *
48638239 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATGACCATT
* * *
48638266 ATACCCCTAGGTGCAAAGTGACCATT
1 ATACCCCTAAGTGAAAAATGACCATT
48638292 ATACCCCTA
1 ATACCCCTA
48638301 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATT
Found at i:48638449 original size:28 final size:28
Alignment explanation
Indices: 48638408--48638486 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
48638398 GGAAGCGTTT
*
48638408 TGGTGGCTATGCCACAAATATCTATTTC
1 TGGTGGCTACGCCACAAATATCTATTTC
*
48638436 TGGTGGCTACGCCACAAATATCT-GTTC
1 TGGTGGCTACGCCACAAATATCTATTTC
48638463 TGGTGGCT-CTGCCAC-AATATCTAT
1 TGGTGGCTAC-GCCACAAATATCTAT
48638487 ATCTAGTGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
26 8 0.17
27 16 0.35
28 22 0.48
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
TGGTGGCTACGCCACAAATATCTATTTC
Found at i:48638476 original size:27 final size:26
Alignment explanation
Indices: 48638408--48638519 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
48638398 GGAAGCGTTT
* *
48638408 TGGTGGCTATGCCACAAATATCTATTTC
1 TGGTGGCTCTGCCAC-AATATCT-GTTC
48638436 TGGTGGCTAC-GCCACAAATATCTGTTC
1 TGGTGGCT-CTGCCAC-AATATCTGTTC
*
48638463 TGGTGGCTCTGCCACAATATCTATATC
1 TGGTGGCTCTGCCACAATATCTGT-TC
* * * *
48638490 TAGTGACTCTGTCACAATATCTGTTT
1 TGGTGGCTCTGCCACAATATCTGTTC
48638516 TGGT
1 TGGT
48638520 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 13 0.18
27 38 0.53
28 21 0.29
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:48641402 original size:33 final size:34
Alignment explanation
Indices: 48641331--48641405 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
48641321 ATTGCACTTA
*
48641331 TGATACTATTATTGTAATGGGCTAAGGCCCACAC
1 TGATACTATTATTGTAATAGGCTAAGGCCCACAC
* *
48641365 TGATACTGTTATTGTAATAGGCTAAGG-CCACAT
1 TGATACTATTATTGTAATAGGCTAAGGCCCACAC
48641398 TGATACTA
1 TGATACTA
48641406 GACTATCACT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 12 0.32
34 25 0.68
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (34 bp):
TGATACTATTATTGTAATAGGCTAAGGCCCACAC
Found at i:48645898 original size:33 final size:34
Alignment explanation
Indices: 48645834--48645909 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 34
48645824 GGTAGGATTT
* * *
48645834 CTGTTACTGAATTGGGCTAAGGTCCGCACTGATA
1 CTGTTACTGAATTGGGCTAAGGCCCGAACTGAGA
*
48645868 CTGTTACTGAA-TGGGCTAAGGCCCTAACTGAGA
1 CTGTTACTGAATTGGGCTAAGGCCCGAACTGAGA
48645901 CTG-TACTGA
1 CTGTTACTGA
48645910 TACTGAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 6 0.16
33 21 0.55
34 11 0.29
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (34 bp):
CTGTTACTGAATTGGGCTAAGGCCCGAACTGAGA
Found at i:48652127 original size:39 final size:39
Alignment explanation
Indices: 48651923--48652145 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
48651913 TTGAATGCTG
* * * * * *
48651923 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
48651963 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
48652003 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
48652043 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
48652083 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
48652122 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
48652146 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:48652165 original size:79 final size:80
Alignment explanation
Indices: 48652003--48652180 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
48651993 AGATACAAGT
* * * *
48652003 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
48652068 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
48652083 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
48652147 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
48652162 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
48652181 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:48657033 original size:20 final size:20
Alignment explanation
Indices: 48657010--48657048 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
48657000 TAAACATGGT
48657010 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
48657030 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
48657049 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:48657125 original size:24 final size:24
Alignment explanation
Indices: 48657099--48657291 Score: 280
Period size: 24 Copynumber: 8.0 Consensus size: 24
48657089 AAGGAAGTGC
*
48657099 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
48657123 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48657147 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
48657171 AAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
* *
48657196 AAAAGGTCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
48657220 AAAAGGGCTTATGCCCCAGTTCTT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
48657244 AAAAGGGCTTTTGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48657268 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
48657292 ATGATAAAGC
Statistics
Matches: 152, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
24 119 0.78
25 33 0.22
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:48657288 original size:73 final size:73
Alignment explanation
Indices: 48657099--48657291 Score: 282
Period size: 73 Copynumber: 2.6 Consensus size: 73
48657089 AAGGAAGTGC
* * *
48657099 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
48657164 AGTTATTA
66 AGTTATTA
*
48657172 AAAAGGGCTTATGCCCCAGTTATTAAAAGGTCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
*
48657237 AGTTCTT-
66 AGTTATTA
* * *
48657244 AAAAGGGCTTTTGCCTCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
48657292 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
72 32 0.29
73 77 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (73 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTATTA
Found at i:48657288 original size:97 final size:97
Alignment explanation
Indices: 48657099--48657291 Score: 318
Period size: 97 Copynumber: 2.0 Consensus size: 97
48657089 AAGGAAGTGC
48657099 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTC
*
48657164 AGTTATTAAAAAGGGCTTATGCCCCAGTTATT
66 AGTTATTAAAAAGGGCTTAGGCCCCAGTTATT
* * *
48657196 AAAAGGTCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTCTTAAAAGGGCTTTTGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTC
48657261 AGTTATT-AAAAGAGGC-TAGGCCTCCAGTTAT
66 AGTTATTAAAAAG-GGCTTAGGCC-CCAGTTAT
48657292 ATGATAAAGC
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
96 10 0.11
97 80 0.89
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (97 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTC
AGTTATTAAAAAGGGCTTAGGCCCCAGTTATT
Found at i:48673336 original size:40 final size:39
Alignment explanation
Indices: 48673284--48673416 Score: 167
Period size: 41 Copynumber: 3.3 Consensus size: 39
48673274 TAACTCATTC
* *
48673284 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
48673324 AATGCCTTCGGGACTATAACCCGGAATTAGTATCTCGCACAA
1 AATGCCTTCGGGACT-TAACCCGGAATTA-AAACTCGCAC-A
*
48673366 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
48673406 AATACCTTCGG
1 AATGCCTTCGG
48673417 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
40 28 0.35
41 38 0.47
42 14 0.17
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:48673361 original size:41 final size:39
Alignment explanation
Indices: 48673284--48673469 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 39
48673274 TAACTCATTC
* * *
48673284 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTATAACTCGCACA
*
48673324 AATGCCTTCGGGACTATAACCCGGAATTAGTATCTCGCACAA
1 AATGCCTTCGGGACT-TAACCCGGAATTA-TAACTCGCAC-A
*
48673366 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATT-ATAACTCGCACA
* ** * *
48673406 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TA-TAAC-TCGCACA
*
48673447 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48673470 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
39 6 0.05
40 52 0.43
41 49 0.40
42 15 0.12
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTATAACTCGCACA
Found at i:48673446 original size:82 final size:80
Alignment explanation
Indices: 48673287--48673469 Score: 205
Period size: 82 Copynumber: 2.3 Consensus size: 80
48673277 CTCATTCAAT
* * *
48673287 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTATAACCCGGAATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTATAACCCGGAATT
*
48673352 AGTATCTCGCACAAAA
66 AGTATCTAGCAC-AAA
**
48673368 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCT-TAGTCCGG-
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTATAACCCGGA
48673429 ATATAGTCA-CTTAGCACAAA
63 AT-TAGT-ATC-TAGCACAAA
*
48673449 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
48673470 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 12
0.82 0.06 0.11
Matches are distributed among these distances:
80 22 0.25
81 21 0.24
82 46 0.52
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTATAACCCGGAATT
AGTATCTAGCACAAA
Found at i:48676227 original size:20 final size:20
Alignment explanation
Indices: 48676204--48676242 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
48676194 TAAACATGGT
48676204 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
48676224 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
48676243 TATGATATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:48676248 original size:16 final size:16
Alignment explanation
Indices: 48676208--48676256 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
48676198 CATGGTATGT
*
48676208 ATGATATGCACATG-AC
1 ATGATATG-ATATGCAC
48676224 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
48676239 ATGATATGATATGCAC
1 ATGATATGATATGCAC
48676255 AT
1 AT
48676257 AATGTATTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
16 17 0.57
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:48676335 original size:24 final size:24
Alignment explanation
Indices: 48676309--48676501 Score: 244
Period size: 24 Copynumber: 8.0 Consensus size: 24
48676299 GAGTAAGTGC
*
48676309 AAAAGAGCTTATGCCCCAGTTATC
1 AAAAGAGCTTATGCCCCAGTTATT
* *
48676333 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATT
48676357 AAAAGAGCTTATGCCCCAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATT
* * **
48676381 AAAAAGGGCTTGTGCCCCAGTTACC
1 -AAAAGAGCTTATGCCCCAGTTATT
*
48676406 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATT
* *
48676430 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATT
*
48676454 AAAAGAGCTTTTGCCCCAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATT
*
48676478 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGA-GCTTATGCC-CCAGTTAT
48676502 ATGATAAAGC
Statistics
Matches: 150, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
24 120 0.80
25 30 0.20
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGAGCTTATGCCCCAGTTATT
Found at i:48676428 original size:73 final size:72
Alignment explanation
Indices: 48676309--48676501 Score: 271
Period size: 73 Copynumber: 2.7 Consensus size: 72
48676299 GAGTAAGTGC
*
48676309 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGAGCTTATGCCCC
1 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCC
48676374 AGTTATT
66 AGTTATT
* * * * *
48676381 AAAAAGGGCTTGTGCCCCAGTTACCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCC
1 -AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCC
48676446 CAGTTATT
65 CAGTTATT
* * *
48676454 AAAAGAGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGAGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTAT
48676502 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
72 30 0.28
73 77 0.72
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (72 bp):
AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCC
AGTTATT
Found at i:48676458 original size:48 final size:48
Alignment explanation
Indices: 48676309--48676501 Score: 271
Period size: 48 Copynumber: 4.0 Consensus size: 48
48676299 GAGTAAGTGC
* *
48676309 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* **
48676357 AAAAGAGCTTATGCCCCAGTTATTAAAAAGGGCTTGTGCCCCAGTTACC
1 AAAAGAGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
* *
48676406 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGAGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
48676454 AAAAGAGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGAGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
48676502 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
48 75 0.58
49 54 0.42
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (48 bp):
AAAAGAGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:48676498 original size:97 final size:97
Alignment explanation
Indices: 48676308--48676500 Score: 300
Period size: 97 Copynumber: 2.0 Consensus size: 97
48676298 GGAGTAAGTG
*
48676308 CAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGAGCTTATGCCC
1 CAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCC
*
48676373 CAGTTATTAAAAAGGGCTTGTGCCCCAGTTAC
66 CAGTTATTAAAAAGGGCTAGTGCCCCAGTTAC
* * * *
48676405 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGCTTTTGCCC
1 CAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCC
48676470 CAGTTATT-AAAAGAGGCTAG-GCCTCCAGTTA
66 CAGTTATTAAAAAG-GGCTAGTGCC-CCAGTTA
48676501 TATGATAAAG
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
96 8 0.09
97 80 0.91
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (97 bp):
CAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCC
CAGTTATTAAAAAGGGCTAGTGCCCCAGTTAC
Found at i:48692797 original size:50 final size:49
Alignment explanation
Indices: 48692674--48692911 Score: 266
Period size: 49 Copynumber: 4.8 Consensus size: 49
48692664 TGAGGTCACG
* * *
48692674 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTGGTCGAA
* * * * *
48692723 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCTGATAACTTCGATC-AA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-AGTT-GGTCGAA
* *
48692773 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTT-GGTCGA-A
* * *
48692823 TGTGTAGTACTAAGTGCAGGCTACTACGTGT-TCCGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-CAGATAGTTGGTCGAA
* * *
48692872 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG
48692912 CTTCGGCTAC
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
49 79 0.50
50 75 0.48
51 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTGGTCGAA
Found at i:48692875 original size:99 final size:99
Alignment explanation
Indices: 48692674--48692909 Score: 325
Period size: 99 Copynumber: 2.4 Consensus size: 99
48692664 TGAGGTCACG
* *
48692674 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTG
* *
48692739 CAGGCTACTATGCGTATCTGATAACTTCGATCAA
66 CAGGCTACTACGCGTATCGGATAACTTCGATCAA
* *
48692773 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTT-GGTCACATGTGTAGTACTAAGT
* * *
48692838 GCAGGCTACTACGTGT-TCCGGATAA-TT-GGTCGTA
65 GCAGGCTACTACGCGTAT-CGGATAACTTCGATC-AA
* *
48692872 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
48692910 AGCTTCGGCT
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
98 3 0.02
99 79 0.65
100 40 0.33
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGCGTATCGGATAACTTCGATCAA
Found at i:48697012 original size:14 final size:14
Alignment explanation
Indices: 48696993--48697019 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48696983 ACTAAGCACT
48696993 TGTTTTGGTATGTA
1 TGTTTTGGTATGTA
48697007 TGTTTTGGTATGT
1 TGTTTTGGTATGT
48697020 TTAAGCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.00, G:0.30, T:0.59
Consensus pattern (14 bp):
TGTTTTGGTATGTA
Found at i:48704389 original size:93 final size:93
Alignment explanation
Indices: 48704230--48704400 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
48704220 GCCCATAAGT
* * * * *
48704230 GAACTCGGACTCAACTCAATGAGCTCGGGCGATTGTATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAGTAAACTCGGACTCAACTCAA
*
48704295 CGATTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
48704323 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATTTGCATCCATAAGTAAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGA-TTGCATCCATAAGTAAACTCGGACTCAACTCA
48704387 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
48704401 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAGTAAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:48704391 original size:46 final size:46
Alignment explanation
Indices: 48704222--48704397 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
48704212 TGTAACCCGC
* * * *
48704222 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGATTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCAT
* * * *
48704268 CCATGAGTGAACTCGGACTCAACTCAACGATTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CGA-TTGCAT
* *
48704318 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGA-TTGCAT
*
48704361 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48704398 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCAT
Found at i:48713035 original size:47 final size:46
Alignment explanation
Indices: 48712962--48713281 Score: 243
Period size: 47 Copynumber: 6.7 Consensus size: 46
48712952 TCGGTATTGA
* * **
48712962 GATGATGGCTAGTGTAAGATGTGTCTGGGACATGCATCAGCCGCAT
1 GATGATAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCGCAT
* * * * *
48713008 CATGATAGCCCGTGTAAGACCACGTCTGGGACATGGCATC-GGCGTA-
1 GATGATAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCGCAT
* *
48713054 GAGGTGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAT
1 GA--TGA-TAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCGC-AT
* * * *
48713103 GATGTTAGCCAGTGTAAGACGTGTCTGGGACATTCATCAGCCTCGAT
1 GATGATAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCGC-AT
* *
48713150 GATGTTAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGTAT
1 GATGATAGCCAGTGTAAGACATGTCTGGGACATGCATCAGC-CGCAT
* * * * * * *
48713197 ACACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAAT
1 -GATGATAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCGC-AT
** *
48713247 GGA-GATAGCCAGCATAAGACCATGTCTTGGACATG
1 -GATGATAGCCAGTGTAAGA-CATGTCTGGGACATG
48713282 GCAGTGGCAA
Statistics
Matches: 221, Mismatches: 39, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
46 22 0.10
47 110 0.50
48 36 0.16
49 44 0.20
50 9 0.04
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GATGATAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCGCAT
Found at i:48713089 original size:94 final size:94
Alignment explanation
Indices: 48712928--48713240 Score: 312
Period size: 94 Copynumber: 3.3 Consensus size: 94
48712918 AGAGCCAATA
* * * * * **
48712928 TAAGACCAAGTCTGGGACATGGCATCGGTATTGAGATGA-TGGCTAGTGTAAGATGTGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAG-TGAGTAGCCAGTGTAAGACATGTCTGGGA
*
48712992 CATGCATCAGCCGCATCATGATAGCCCGTG
65 CATGCATCAGCCGCATCATGATAGCCAGTG
* *
48713022 TAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTGAGT-GCCAGTGTAAGACATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGA-GTGAGTAGCCAGTGTAAGACATGTCTGGGA
* * * *
48713086 CATGCATCGGCCTCGATGATGTTAGCCAGTG
65 CATGCATCAGCCGC-ATCATGATAGCCAGTG
* * * * *
48713117 TAAGA-CGTGTCTGGGACAT-TCATCAGCCTCGA-TGATGTTAGCCAGTGTAAGACATGTCTGGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGTGA-G-TAGCCAGTGTAAGACATGTCTGGG
* * * *
48713179 ACATGCATCAGCACGTATACACGAGAGCTAGTG
64 ACATGCATCAGC-CGCAT-CATGATAGCCAGTG
*
48713212 TAAGACCATGTCTGGGACATGGCGTCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
48713241 CTCAATGGAG
Statistics
Matches: 179, Mismatches: 30, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
91 3 0.02
92 1 0.01
93 10 0.06
94 112 0.63
95 35 0.20
96 13 0.07
97 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGAGTGAGTAGCCAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCGCATCATGATAGCCAGTG
Found at i:48713183 original size:141 final size:143
Alignment explanation
Indices: 48712918--48713243 Score: 374
Period size: 141 Copynumber: 2.3 Consensus size: 143
48712908 GGGTTATGTA
* * * ** * * * *
48712918 AGAGCCAATATAAGACCAAGTCTGGGACATGGCATCGGTATTGAGATGATGGCTAGTGTAAGATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGATAGCCAGTGTAAGACG
*
48712983 TGTCTGGGACATGCATCAGCCGCATCATGATAGCCCGTGTAAGACCACGTCTGGGACATGGCATC
66 TGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCACGTCTGGGACAT-GCATC
* ***
48713048 -G-GCGTAGAGGTG
130 AGCACGTAGACACG
* *
48713060 AGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGATAGCCAGTGTAAGAC
* * * * *
48713123 GTGTCTGGGACATTCATCAGCCTCGATGATGTTAGCCAGTGTAAGA-CATGTCTGGGACATGCAT
65 GTGTCTGGGACATGCATCAGCCGC-ATCATGATAGCCAGTGTAAGACCACGTCTGGGACATGCAT
*
48713187 CAGCACGTATACACG
129 CAGCACGTAGACACG
* *
48713202 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
48713244 AATGGAGATA
Statistics
Matches: 153, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
140 15 0.10
141 65 0.42
142 49 0.32
143 14 0.09
144 10 0.07
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (143 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGATAGCCAGTGTAAGACG
TGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCACGTCTGGGACATGCATCA
GCACGTAGACACG
Done.