Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 144 of 295
Found at i:49057901 original size:51 final size:49
Alignment explanation
Indices: 49057773--49057918 Score: 157
Period size: 51 Copynumber: 2.9 Consensus size: 49
49057763 TAGACAAGGC
* * * * *
49057773 TATCTGGTACGAATTGTAGCCTACACTTAGTACTACACATGTGACCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
49057822 TATCCGGTCCACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
** * *
49057873 TATTGGGTACGCATAGTAGCCTGCACTTAGTACAACATACGTGACC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
49057919 TCACAATAGA
Statistics
Matches: 78, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
49 36 0.46
50 4 0.05
51 38 0.49
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:49058196 original size:27 final size:27
Alignment explanation
Indices: 49058166--49058219 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
49058156 TCATACAACC
* *
49058166 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
49058193 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
49058220 TCACATGACG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:49064920 original size:40 final size:40
Alignment explanation
Indices: 49064866--49065119 Score: 307
Period size: 40 Copynumber: 6.3 Consensus size: 40
49064856 CTCACACAAG
* * * *
49064866 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * *
49064906 GCCTTCGGGACTTAGCCTGG-ATATAATAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * * *
49064946 GCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGCACAAAA
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
49064986 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
49065026 GCCTTCGGGACTTAGCCCGGAATTTGTAACTCA-CACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACT-AGCACAAAT
* * *
49065066 GCCTTCGGGACTTAGCCCGAAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
49065106 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
49065120 ACCCCGTTAG
Statistics
Matches: 189, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 186 0.98
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
Found at i:49064966 original size:80 final size:80
Alignment explanation
Indices: 49064830--49065119 Score: 331
Period size: 80 Copynumber: 3.6 Consensus size: 80
49064820 ACCCAATTAT
* * ** * * * * *
49064830 CTTCGGGATTTAGCCAGATA-TAACCACTCACAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGG
1 CTTCGGGACTTAGCCGGATATTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TTG
*
49064892 TCACTAGCACAAATGC
65 TAACTAGCACAAATGC
*
49064908 CTTCGGGACTTAGCCTGGATA-TAATAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTG
1 CTTCGGGACTTAGCC-GGATATTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTG
* *
49064972 TAACTCGCACAAAAGC
65 TAACTAGCACAAATGC
*
49064988 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTG
1 CTTCGGGACTTAG-CCGGATATTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTG
49065052 TAACTCA-CACAAATGC
65 TAACT-AGCACAAATGC
* * * * *
49065068 CTTCGGGACTTAGCCCGAAATTAATCACTAGCACAAATGTCTTCGGGACTTA
1 CTTCGGGACTTAGCCGGATATTAATAACTCGCACAAATGCCTTCGGGACTTA
49065120 ACCCCGTTAG
Statistics
Matches: 184, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.08
79 19 0.10
80 147 0.80
81 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCGGATATTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGT
AACTAGCACAAATGC
Found at i:49067163 original size:50 final size:50
Alignment explanation
Indices: 49067036--49067432 Score: 361
Period size: 49 Copynumber: 8.0 Consensus size: 50
49067026 GTAGACAAGG
* * * * ***
49067036 CTATTTGGTACGCATAGTAGTCTGCACTTAGTACTACACATACGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* *
49067085 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * * *
49067135 CCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATGATCAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * * * * *
49067185 GCTATCAGTTACGCATAGTAGTCTCCACTTAGTACTACACATGCGACC-AA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* *
49067235 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * * *
49067285 CCATCTGATACACGTAGTAACCTGCACTTAGTACTACATACGTGATCAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * * * * *
49067335 GTTATCAGGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACC-AA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * *
49067385 TTATCTGGTACACGTAAG-AGCCTGCATTTAGTACTACACTCGTGACCT
1 CTATCTGGTACACGT-AGTAGCCTGCACTTAGTACTACACACGTGACCT
49067433 CACAATAGAT
Statistics
Matches: 275, Mismatches: 67, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
49 111 0.40
50 94 0.34
51 70 0.25
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
Found at i:49067271 original size:100 final size:99
Alignment explanation
Indices: 49067050--49067322 Score: 269
Period size: 99 Copynumber: 2.7 Consensus size: 99
49067040 TTGGTACGCA
* * * * * * *
49067050 TAGTAGTCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACAAACTATCAGGTACACATAGTAGCCTCCACTTA
* *
49067115 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * * * *
49067149 TAGTAGCCTACACTTAGTACTACACACATGATCAAAGCTATCAGTTACGCATAGTAGTCTCCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CAAA-CTATCAGGTACACATAGTAGCCTCCACT
* ** *
49067214 TAGTACTACACATGCGACC-AATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
** * * * * * * *
49067249 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAACCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CAAACTATCAGGTACACATAGTAGCCTCCACTT
49067314 AGTACTACA
65 AGTACTACA
49067323 TACGTGATCA
Statistics
Matches: 142, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
99 57 0.40
100 47 0.33
101 38 0.27
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACAAACTATCAGGTACACATAGTAGCCTCCACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:49067313 original size:150 final size:150
Alignment explanation
Indices: 49067042--49067432 Score: 658
Period size: 150 Copynumber: 2.6 Consensus size: 150
49067032 AAGGCTATTT
* *
49067042 GGTACGCATAGTAGTCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
49067107 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAACCTACACTTAGTACTAC
49067172 ACACATGATCAAAGCTATCA
131 ACACATGATCAAAGCTATCA
* *
49067192 GTTACGCATAGTAGTCTCCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
49067257 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAACCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAACCTACACTTAGTACTAC
* * *
49067322 ATACGTGATCAAAGTTATCA
131 ACACATGATCAAAGCTATCA
*
49067342 GGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAAG-AGC
1 GGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGT-AGTAGC
* *
49067406 CTGCATTTAGTACTACACTCGTGACCT
65 CTGCACTTAGTACTACACACGTGACCT
49067433 CACAATAGAT
Statistics
Matches: 227, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
150 225 0.99
151 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGTCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAACCTACACTTAGTACTAC
ACACATGATCAAAGCTATCA
Found at i:49069696 original size:27 final size:27
Alignment explanation
Indices: 49069666--49069784 Score: 127
Period size: 27 Copynumber: 4.4 Consensus size: 27
49069656 GGGCAAAATA
* *
49069666 GTCATTTTACCCTACAAGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATTTCG
*
49069693 GTCATTTTACACTACAAGGGTATTTTG
1 GTCATTTTACACTACAAGGGTATTTCG
*
49069720 G-CAATTTTACACTATAAGGGTATTTCG
1 GTC-ATTTTACACTACAAGGGTATTTCG
* * *
49069747 GTAATTTTACA-AATCGAGGGTATTTCG
1 GTCATTTTACACTA-CAAGGGTATTTCG
49069774 GT-AGTTTTACA
1 GTCA-TTTTACA
49069785 AATTGAGGGT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
26 3 0.04
27 76 0.96
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATTTCG
Found at i:49069785 original size:27 final size:27
Alignment explanation
Indices: 49069682--49069968 Score: 310
Period size: 27 Copynumber: 10.7 Consensus size: 27
49069672 TTACCCTACA
* * * *
49069682 AGGGTATGTCGGTCATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * * *
49069709 AGGGTATTTTGGCAATTTTACACTAT-A
1 AGGGTATTTCGGTAATTTTACA-AATCG
49069736 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
49069763 AGGGTATTTCGGTAGTTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
49069790 AGGGTATTTTAGTAATTTTACAACTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
49069817 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
49069844 AGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
49069871 GGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
49069898 AGGGCATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
49069924 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
49069951 GGGGTATTTCGATAATTT
1 AGGGTATTTCGGTAATTT
49069969 GTCTTTATTA
Statistics
Matches: 216, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 24 0.11
27 191 0.88
29 1 0.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:49070015 original size:26 final size:26
Alignment explanation
Indices: 49069985--49070036 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
49069975 ATTATGGGTT
49069985 TATTACTTACCTTGGCCTATTAACAA
1 TATTACTTACCTTGGCCTATTAACAA
49070011 TATTACTTACCTTGGCCTATTAACAA
1 TATTACTTACCTTGGCCTATTAACAA
49070037 GTCTACGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (26 bp):
TATTACTTACCTTGGCCTATTAACAA
Found at i:49070355 original size:27 final size:28
Alignment explanation
Indices: 49070312--49070374 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
49070302 TGGCCCCTTT
* *
49070312 AGGCCCAATCTCGTTCACATAGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
** *
49070340 A-GCCCAATCACATTCATGTGGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
49070367 AGGCCCAA
1 AGGCCCAA
49070375 CTACTTCCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.27, C:0.38, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATAGCCCATC
Found at i:49071573 original size:25 final size:25
Alignment explanation
Indices: 49071545--49071639 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
49071535 CTCTTTTAAT
* *
49071545 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
49071570 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
49071595 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
49071620 AACTGGGGCAAAGCCTTTTT
1 AACTGGGGCAAAGCCCTTTT
49071640 AGCAATTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:49071575 original size:50 final size:50
Alignment explanation
Indices: 49071532--49071639 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
49071522 CTGGAGGCCT
*
49071532 AGCCTCTTTT-AAT-AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
** * *
49071581 AGCCCTTTTCGGTAAACTGGGGCAAAGCTCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
*
49071631 AGCCTTTTT
1 AGCCCTTTT
49071640 AGCAATTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
48 5 0.10
49 5 0.10
50 41 0.80
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
Found at i:49071962 original size:81 final size:81
Alignment explanation
Indices: 49071844--49072033 Score: 267
Period size: 81 Copynumber: 2.3 Consensus size: 81
49071834 GGAGCAAAAT
* * * **
49071844 GGTAATTTTACCCCACAAGGGTATCTT-GGTAATTCTACCATACAGGGGTATTTTGGTAATTCTA
1 GGTAATTCTACCCTACATGGGTAT-TTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTA
*
49071908 CCCTATAGAGGTATTTC
65 CCCTACAGAGGTATTTC
* * *
49071925 GGTAATTCTACCTTACA-GGGTTATTTCGGTAATTCTACCTTATAGGGGTATTTCAGTAATTCTA
1 GGTAATTCTACCCTACATGGG-TATTTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTA
49071989 CCCTACAGAGGTATTTC
65 CCCTACAGAGGTATTTC
49072006 GGTAATTCTACCCTACATGGGTATTTCG
1 GGTAATTCTACCCTACATGGGTATTTCG
49072034 ATATTTTACA
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
80 5 0.05
81 89 0.92
82 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACATGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTAC
CCTACAGAGGTATTTC
Found at i:49072030 original size:27 final size:26
Alignment explanation
Indices: 49071844--49072033 Score: 220
Period size: 27 Copynumber: 7.0 Consensus size: 26
49071834 GGAGCAAAAT
* *
49071844 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTAC-AGGGTAT-TTC
* *
49071871 GGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
*
49071898 GGTAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
*
49071925 GGTAATTCTACCTTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
* *
49071952 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
49071979 AGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
49072006 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
49072033 G
1 G
49072034 ATATTTTACA
Statistics
Matches: 143, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.05
27 132 0.92
28 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:49072091 original size:27 final size:27
Alignment explanation
Indices: 49072061--49072268 Score: 181
Period size: 27 Copynumber: 7.7 Consensus size: 27
49072051 AGTATTTCAA
* *
49072061 TAATTTCACAAATCAGGGGTGTTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
**
49072088 TAATTTTACAAGCCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
49072115 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
* ** *
49072142 TAATTCTACTGATC-GAGGGTATTTTTG
1 TAATTTTACAAATCAG-GGGTATTTTGG
*
49072169 TAATTTTAC-AAGCTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
**
49072196 TAATTTTACTGATC-GAGGGTATTTTGG
1 TAATTTTACAAATCAG-GGGTATTTTGG
** * * *
49072223 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTACAAATCAGGGGTATTTTGG
* *
49072250 TAATATTATAAATCGAGGG
1 TAATTTTACAAATC-AGGG
49072269 TAAAACGGTA
Statistics
Matches: 146, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
26 5 0.03
27 134 0.92
28 7 0.05
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:49072146 original size:81 final size:82
Alignment explanation
Indices: 49072036--49072228 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 82
49072026 GTATTTCGAT
* * *** *
49072036 ATTTTACAAATCGAGAGTATTTCAATAATTTC-ACAAATC-AGGGGTGTTTTGGTAATTTTACAA
1 ATTTTACAAATAGAGGGTATTTTGGTAATTTCTACAAATCGA-GGGTATTTTGGTAATTTTACAA
49072099 GCCAGGGGTATTTTGGTA
65 GCCAGGGGTATTTTGGTA
** *
49072117 ATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTACTGATCGAGGGTATTTTTGTAATTTTACAA
1 ATTTTACAAA-TAGAGGGTATTTTGGTAATTTCTACAAATCGAGGGTATTTTGGTAATTTTACAA
*
49072180 GCTAGGGGTATTTTGGTA
65 GCCAGGGGTATTTTGGTA
** *
49072198 ATTTTACTGATCGAGGGTATTTTGGTAATTT
1 ATTTTACAAATAGAGGGTATTTTGGTAATTT
49072229 TGTAAACCAA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
80 5 0.05
81 84 0.89
82 5 0.05
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.41
Consensus pattern (82 bp):
ATTTTACAAATAGAGGGTATTTTGGTAATTTCTACAAATCGAGGGTATTTTGGTAATTTTACAAG
CCAGGGGTATTTTGGTA
Found at i:49072162 original size:54 final size:54
Alignment explanation
Indices: 49072061--49072270 Score: 237
Period size: 54 Copynumber: 3.9 Consensus size: 54
49072051 AGTATTTCAA
* * * * *
49072061 TAATTTCACAAA-TCAGGGGTGTTTTGGTAATTTTAC-AAGCCAGGGGTATTTTGG
1 TAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGG
* *
49072115 TAATTTTACAAACTAGGGGTATTTTGGTAATTCTACTGATCGAGGGTATTTTTG
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
*
49072169 TAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
** * * * * *
49072223 TAATTTTGTAAACCAAGGGTATTTTAGTAATATTA-TAAATCGAGGGTA
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACT-GATCGAGGGTA
49072271 AAACGGTAAT
Statistics
Matches: 135, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 130 0.96
55 4 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
Found at i:49072242 original size:81 final size:81
Alignment explanation
Indices: 49072077--49072253 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 81
49072067 CACAAATCAG
* * *
49072077 GGGTGTTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGG
* * *
49072142 TAATTCTACTGATCGA
66 TAATTCTACTAACCAA
* * * *
49072158 GGGTATTTTTGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTG
1 GGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTAC-AAACGAGGGGTATTTTG
**
49072222 GTAATT-TTGTAAACCAA
65 GTAATTCTACT-AACCAA
49072239 GGGTATTTTAGTAAT
1 GGGTATTTTAGTAAT
49072254 ATTATAAATC
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 77 0.94
82 3 0.04
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGG
TAATTCTACTAACCAA
Found at i:49072269 original size:27 final size:27
Alignment explanation
Indices: 49072036--49072390 Score: 155
Period size: 27 Copynumber: 13.1 Consensus size: 27
49072026 GTATTTCGAT
* * ***
49072036 ATTTTACAAATCGAGAGTATTTCAATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * *
49072063 ATTTCACAAATC-AGGGGTGTTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* * *
49072090 ATTTTA-CAAGCCAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* *
49072117 ATTTTACAAA-CTAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* * *
49072144 ATTCTACT-GATCGAGGGTATTTTTGTA
1 ATTTTA-TAAATCGAGGGTATTTTGGTA
* * *
49072171 ATTTTA-CAAGCTAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
*
49072198 ATTTTACT-GATCGAGGGTATTTTGGTA
1 ATTTTA-TAAATCGAGGGTATTTTGGTA
* * * *
49072225 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
49072252 ATATTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * **** *
49072279 ATTCTGTAAATCGAGGGTAAAACGATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ****
49072306 ATTCTGTAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* *****
49072333 ATTCTATAAATCGAGGGTAAAACAGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* **
49072360 ATTCTATAAATCGAGGGTATTTCAGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
49072387 ATTT
1 ATTT
49072391 GGTAAACTAA
Statistics
Matches: 268, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
26 8 0.03
27 253 0.94
28 7 0.03
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.36
Consensus pattern (27 bp):
ATTTTATAAATCGAGGGTATTTTGGTA
Found at i:49072292 original size:81 final size:81
Alignment explanation
Indices: 49072207--49072397 Score: 213
Period size: 81 Copynumber: 2.4 Consensus size: 81
49072197 AATTTTACTG
* ****
49072207 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATAT-TATAAATCGAGGGTA
1 ATCGAGGGTATTTCGGTAATTTTGTAAACCAAGGGTAAAACAGTAAT-TCTATAAATCGAGGGTA
* *
49072271 AAACGGTAATTCTGTAA
65 AAACAGTAATTCTATAA
*** * * * * *
49072288 ATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTATTTCGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
49072353 AACAGTAATTCTATAA
66 AACAGTAATTCTATAA
* *
49072369 ATCGAGGGTATTTCAGTAATTTGGTAAAC
1 ATCGAGGGTATTTCGGTAATTTTGTAAAC
49072398 TAAAGTATTC
Statistics
Matches: 86, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
80 1 0.01
81 85 0.99
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.31
Consensus pattern (81 bp):
ATCGAGGGTATTTCGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
AACAGTAATTCTATAA
Found at i:49072389 original size:54 final size:54
Alignment explanation
Indices: 49072248--49072378 Score: 212
Period size: 54 Copynumber: 2.4 Consensus size: 54
49072238 AGGGTATTTT
*
49072248 AGTAATAT-TATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAAT-TCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
*
49072302 -GATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
49072356 AGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
49072379 TTTCAGTAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
53 2 0.03
54 68 0.96
55 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (54 bp):
AGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:49072396 original size:27 final size:27
Alignment explanation
Indices: 49072258--49072378 Score: 190
Period size: 27 Copynumber: 4.5 Consensus size: 27
49072248 AGTAATATTA
*
49072258 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTG
49072285 TAAATCGAGGGTAAAAC-GATAATTCTG
1 TAAATCGAGGGTAAAACAG-TAATTCTG
* *
49072312 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTG
*
49072339 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTG
49072366 TAAATCGAGGGTA
1 TAAATCGAGGGTA
49072379 TTTCAGTAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
26 1 0.01
27 88 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTG
Found at i:49080449 original size:46 final size:46
Alignment explanation
Indices: 49080399--49080575 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
49080389 TGGTTGAGCA
*
49080399 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49080445 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
49080490 CATCCGAGCTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
49080538 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
49080576 CGGGTTACAT
Statistics
Matches: 108, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49080555 original size:93 final size:93
Alignment explanation
Indices: 49080396--49080566 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
49080386 GGATGGTTGA
* * *
49080396 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49080461 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
49080489 GCATCCGAGCTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49080554 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49080567 ACTTATGGAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49090308 original size:15 final size:15
Alignment explanation
Indices: 49090288--49090317 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
49090278 AACTTTAAAC
49090288 ATTCACACAAGTCAT
1 ATTCACACAAGTCAT
49090303 ATTCACACAAGTCAT
1 ATTCACACAAGTCAT
49090318 TTTTCGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
ATTCACACAAGTCAT
Found at i:49093611 original size:12 final size:14
Alignment explanation
Indices: 49093596--49093627 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
49093586 GTGAGAACAC
49093596 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
49093608 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
49093622 ATGTGT
1 ATGTGT
49093628 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:49100447 original size:50 final size:50
Alignment explanation
Indices: 49100372--49100573 Score: 181
Period size: 50 Copynumber: 4.0 Consensus size: 50
49100362 TGTTTAAGAT
* *
49100372 GATT-TTAGGACACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
1 GATTGTTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
* * ** *
49100421 AATTGTTAGGTCACATGTGTACTACTAAGTGCAGGCTACTATGCATACCC
1 GATTGTTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
* * * * * * * *
49100471 GATAGCTTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACATGTATCA
1 GATTG-TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
** * * * * * *
49100522 GATTCCTAGGTCGCAAGTGTAGTACTAAGTGTAGGCTACTATGGGTACCA
1 GATTGTTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
49100572 GA
1 GA
49100574 GAGCTTCAGT
Statistics
Matches: 117, Mismatches: 34, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
49 3 0.03
50 77 0.66
51 37 0.32
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (50 bp):
GATTGTTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCA
Found at i:49100513 original size:101 final size:101
Alignment explanation
Indices: 49100382--49100564 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
49100372 GATTTTAGGA
* * ** *
49100382 CACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTACTACT
1 CACGTGTGTACTACTAAGTACAGGCTACTACATGTACCAAATTCCTAGGTCACAAGTGTACTACT
49100447 AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
66 AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
* * * * *
49100483 CACGTGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATTCCTAGGTCGCAAGTGTAGTACT
1 CACGTGTGTACTACTAAGTACAGGCTACTACATGTACCAAATTCCTAGGTCACAAGTGTACTACT
*
49100548 AAGTGTAGGCTACTATG
66 AAGTGCAGGCTACTATG
49100565 GGTACCAGAG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (101 bp):
CACGTGTGTACTACTAAGTACAGGCTACTACATGTACCAAATTCCTAGGTCACAAGTGTACTACT
AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
Found at i:49104332 original size:16 final size:16
Alignment explanation
Indices: 49104311--49104377 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 16
49104301 TGAATTACTG
49104311 ATTATAGCTCTATTCC
1 ATTATAGCTCTATTCC
* * *
49104327 ATTATAGTTTTATTTC
1 ATTATAGCTCTATTCC
* *
49104343 ATTAAAGCTCTATTTC
1 ATTATAGCTCTATTCC
* * *
49104359 ATTACAACCCTATTCC
1 ATTATAGCTCTATTCC
49104375 ATT
1 ATT
49104378 CTATCGAACC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.46
Consensus pattern (16 bp):
ATTATAGCTCTATTCC
Found at i:49105645 original size:22 final size:22
Alignment explanation
Indices: 49105620--49105670 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
49105610 ACACTCTTCA
49105620 ATCCTCTGTTTAATTTTTTTCT
1 ATCCTCTGTTTAATTTTTTTCT
*
49105642 ATCCCCTGTTTAATTTTTTTCT
1 ATCCTCTGTTTAATTTTTTTCT
49105664 ATCCTCT
1 ATCCTCT
49105671 ATGTACGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.14, C:0.24, G:0.04, T:0.59
Consensus pattern (22 bp):
ATCCTCTGTTTAATTTTTTTCT
Found at i:49107755 original size:21 final size:21
Alignment explanation
Indices: 49107717--49107756 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
49107707 CAAGTAAGAA
* *
49107717 ATGAAATTAATTCGTCTCATT
1 ATGAAATTAATCCATCTCATT
*
49107738 ATGAGATTAATCCATCTCA
1 ATGAAATTAATCCATCTCA
49107757 CATCAAAGCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATGAAATTAATCCATCTCATT
Found at i:49114097 original size:30 final size:30
Alignment explanation
Indices: 49114063--49114120 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
49114053 TCCTTAACTC
49114063 AAACTTTTGAAAAATTACAATTTTGCCCTT
1 AAACTTTTGAAAAATTACAATTTTGCCCTT
* * * *
49114093 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGAAAAATTACAATTTTGCCC
49114121 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCTT
Found at i:49127097 original size:27 final size:27
Alignment explanation
Indices: 49127059--49127117 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
49127049 AGTGTATTAA
* *
49127059 ACTGGTGGCTTGGCCACATATACTGTT
1 ACTGGTGGCTTGGCCACATAAACTGAT
49127086 ACTGGTGGCTTGGCCACATAAACTGAT
1 ACTGGTGGCTTGGCCACATAAACTGAT
49127113 ACTGG
1 ACTGG
49127118 CAGCTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (27 bp):
ACTGGTGGCTTGGCCACATAAACTGAT
Found at i:49127123 original size:27 final size:27
Alignment explanation
Indices: 49127066--49127123 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
49127056 TAAACTGGTG
* * **
49127066 GCTTGGCCACATATACTGTTACTGGTG
1 GCTTGGCCACATAAACTGATACTGGCA
49127093 GCTTGGCCACATAAACTGATACTGGCA
1 GCTTGGCCACATAAACTGATACTGGCA
49127120 GCTT
1 GCTT
49127124 ACTGTGATAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29
Consensus pattern (27 bp):
GCTTGGCCACATAAACTGATACTGGCA
Found at i:49130938 original size:46 final size:44
Alignment explanation
Indices: 49130888--49131059 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 44
49130878 TGGGCATCCA
*
49130888 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
*** * *
49130934 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCCG
* * *
49130981 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
* *
49131027 AGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49131060 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCCG
Found at i:49131039 original size:93 final size:93
Alignment explanation
Indices: 49130880--49131051 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
49130870 AGGATGTTTG
* * * *
49130880 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
49130945 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
49130973 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCGAGCTTGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
49131038 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49131052 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:49135561 original size:13 final size:13
Alignment explanation
Indices: 49135543--49135567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49135533 TAATGGTATA
49135543 TTGAATCCATGAT
1 TTGAATCCATGAT
49135556 TTGAATCCATGA
1 TTGAATCCATGA
49135568 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:49137585 original size:47 final size:47
Alignment explanation
Indices: 49137531--49138133 Score: 1008
Period size: 47 Copynumber: 12.7 Consensus size: 47
49137521 TTAGGATTTT
* * *
49137531 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49137578 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
49137625 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49137672 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
49137721 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49137768 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
49137817 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49137864 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49137911 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
49137958 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
49138005 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
49138052 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
49138099 ACGTGAAGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49138134 TCCCGAAGGG
Statistics
Matches: 526, Mismatches: 26, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 436 0.83
49 90 0.17
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:49139204 original size:30 final size:30
Alignment explanation
Indices: 49139170--49139227 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
49139160 CACGGCCATG
49139170 ACACACGGGCATGTGGTAT-ACCCGTGTGTC
1 ACACACGGGCATGTGG-ATCACCCGTGTGTC
*
49139200 ACACACGGGCGTGTGGATCACCCGTGTG
1 ACACACGGGCATGTGGATCACCCGTGTG
49139228 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGATCACCCGTGTGTC
Found at i:49151177 original size:23 final size:24
Alignment explanation
Indices: 49151151--49151203 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 24
49151141 CTCCACATGC
*
49151151 CCGTGTGGGT-ATAGAACACACGA
1 CCGTGTGGCTAATAGAACACACGA
49151174 CCGTGT-GCTAATAGAACACACGA
1 CCGTGTGGCTAATAGAACACACGA
49151197 CCGTGTG
1 CCGTGTG
49151204 CTAGGGACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 2 0.07
23 25 0.93
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (24 bp):
CCGTGTGGCTAATAGAACACACGA
Found at i:49151204 original size:23 final size:23
Alignment explanation
Indices: 49151161--49151206 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
49151151 CCGTGTGGGT
49151161 ATAGAACACACGACCGTGTGCTA
1 ATAGAACACACGACCGTGTGCTA
49151184 ATAGAACACACGACCGTGTGCTA
1 ATAGAACACACGACCGTGTGCTA
49151207 GGGACACGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (23 bp):
ATAGAACACACGACCGTGTGCTA
Found at i:49152423 original size:94 final size:93
Alignment explanation
Indices: 49152181--49152497 Score: 313
Period size: 94 Copynumber: 3.4 Consensus size: 93
49152171 TGGGATAAAT
* * * **
49152181 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGCGTGCTGATGCATACCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGAG-GCTGATGCATGTCC
* *
49152246 CAGACATGTCTTACACTAGCAC-AAACTT-
64 CAGACATGTCTTACACTAGCACTCATCTTG
* * * ** * *
49152274 AGCCGATG-TATGTCCCAGGCA-CATCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GAGGCTGATGCATGTC
* * *
49152335 CCAGACATGTCATACTCTGGCACTCATCTCTG
63 CCAGACATGTCTTACACTAGCACTCATCT-TG
* *
49152367 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCATAATGTGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCTGATGCATGTCCCA
* * * * *
49152432 GACCTGTCTTAAACTAGCCCTCGTCTGG
66 GACATGTCTTACACTAGCACTCATCTTG
49152460 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
49152498 GCACAAATCA
Statistics
Matches: 179, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
90 31 0.17
91 17 0.09
92 13 0.07
93 20 0.11
94 85 0.47
95 13 0.07
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTTG
Found at i:49152469 original size:46 final size:46
Alignment explanation
Indices: 49152322--49152497 Score: 189
Period size: 47 Copynumber: 3.8 Consensus size: 46
49152312 CTCTGTCGAG
* * *
49152322 GCCGATG-CATGTCCCAGACAT-GTCATACTCTGGCACTCATCTCTGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCA--TCTGT
*
49152368 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCATAATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCAT-CTGT
* * * * *
49152415 GGCTGATG-CATGTCCCAGACCT-GTCTTAAACTAGCCCTCGTCTGGAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCATCT-G-T
49152462 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
49152498 GCACAAATCA
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 31 0.29
47 44 0.41
48 32 0.30
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCATCTGT
Found at i:49160549 original size:30 final size:30
Alignment explanation
Indices: 49160514--49160571 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
49160504 CATTGCAATG
*
49160514 ACACAAGGGCGTGTAGTAT-ACCCGTGTGTC
1 ACACAAGGGCGTGT-GGATCACCCGTGTGTC
49160544 ACACAAGGGCGTGTGGATCACCCGTGTG
1 ACACAAGGGCGTGTGGATCACCCGTGTG
49160572 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACAAGGGCGTGTGGATCACCCGTGTGTC
Found at i:49168108 original size:26 final size:26
Alignment explanation
Indices: 49168071--49168126 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
49168061 CTTTGCCACA
*
49168071 GATACTGATACTGGCAACTTTGCTGC
1 GATACTGATACTGGCAACCTTGCTGC
* *
49168097 GATACTGTTACTGGCAGCCTTGCTGC
1 GATACTGATACTGGCAACCTTGCTGC
49168123 GATA
1 GATA
49168127 TTGGTGTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (26 bp):
GATACTGATACTGGCAACCTTGCTGC
Found at i:49171037 original size:29 final size:28
Alignment explanation
Indices: 49171002--49171108 Score: 110
Period size: 29 Copynumber: 3.8 Consensus size: 28
49170992 ATAATATGAT
49171002 TTGGGCCTAATGGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* * *
49171031 TTAGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* *
49171060 CTGGGCC-AGATGGGCCATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
*
49171088 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
49171109 CATGTATGTA
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 43 0.68
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:49174051 original size:40 final size:40
Alignment explanation
Indices: 49173998--49174182 Score: 302
Period size: 40 Copynumber: 4.6 Consensus size: 40
49173988 ACTACTTGCT
* *
49173998 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
49174038 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACCCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
49174078 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
49174118 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CA
49174158 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
49174183 TTATCATCCG
Statistics
Matches: 138, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.99
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
Found at i:49178506 original size:42 final size:43
Alignment explanation
Indices: 49178449--49178567 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
49178439 GTTGGCATCA
*
49178449 ATTTACGTCTAAGACCATGTCTGGGACATTGGCATCG-TATATG
1 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATG
* * *
49178492 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTG
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATG
* * * ** *
49178535 ATTACATGTCAGACCACATCTGGGACGTTGGCA
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCA
49178568 CTGTATGAGC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATG
Found at i:49178557 original size:43 final size:42
Alignment explanation
Indices: 49178458--49178560 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
49178448 AATTTACGTC
* * * * *
49178458 TAAGACCATGTCTGGGACATTGGCATCGTATATGATTTCGTG
1 TAAGACCCTATCTGGGACAGTGGCATCGTATATGATTACATG
* *
49178500 TAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACATG
1 TAAGACCCTATCTGGGACAGTGGCATCG-TATATGATTACATG
*
49178543 TCAGACCAC-ATCTGGGAC
1 TAAGACC-CTATCTGGGAC
49178561 GTTGGCACTG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.50
43 25 0.48
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (42 bp):
TAAGACCCTATCTGGGACAGTGGCATCGTATATGATTACATG
Found at i:49180502 original size:39 final size:40
Alignment explanation
Indices: 49180458--49180584 Score: 154
Period size: 39 Copynumber: 3.2 Consensus size: 40
49180448 CCTTCGGAGT
*
49180458 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* **
49180497 TTAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
49180536 TTAGCCCGGA-ATTAGTCACTAGCACAAATCCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
49180576 TTAGCCCGG
1 TTAGCCCGG
49180585 GTATCAATCC
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.49
40 37 0.49
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:49188786 original size:39 final size:39
Alignment explanation
Indices: 49188626--49188886 Score: 330
Period size: 39 Copynumber: 6.6 Consensus size: 39
49188616 GCTACTAGCT
** **
49188626 CAAATGCCTTCAAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
**
49188666 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
*
49188706 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
* * *
49188746 CAAATGCCTTCGGG-CTTAGCTCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCG-AATTAGTAACTCGCA
*
49188785 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
* *
49188824 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
49188863 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
49188887 GGTATCAATC
Statistics
Matches: 208, Mismatches: 10, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
39 106 0.51
40 102 0.49
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
Found at i:49188833 original size:78 final size:78
Alignment explanation
Indices: 49188619--49188887 Score: 389
Period size: 78 Copynumber: 3.4 Consensus size: 78
49188609 GGATATAGCT
* ** *
49188619 ACTAGCTCAAATGCCTTCAAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTT
** *
49188684 AGCCCGGTTATAGTA
65 AGCCCGAAT-TAGTC
*
49188699 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
*
49188764 GCTCGAAATTAGTC
66 GCCCG-AATTAGTC
*
49188778 ACTAGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTCGCACAAATGCCTTCGGGCTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGCTT
49188841 AGCCCGGAATTAGTC
65 AGCCC-GAATTAGTC
49188856 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
49188888 GTATCAATCC
Statistics
Matches: 173, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
77 1 0.01
78 72 0.42
79 43 0.25
80 57 0.33
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
GCCCGAATTAGTC
Found at i:49196809 original size:43 final size:42
Alignment explanation
Indices: 49196719--49196827 Score: 103
Period size: 42 Copynumber: 2.6 Consensus size: 42
49196709 CACTGATTTG
* *
49196719 TGATTTACGTGTAAGACCATGTCTGGGACATTGGCAACGTATA
1 TGATTT-CGTGTAAGACCATGTCTGGGACAGTGGCAACATATA
* * * * *
49196762 TGATTTCGTGTAAGACCCTGTTTGGGATAGTGGCATCCATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCA-ACATATA
* * *
49196805 TGATTACATGTAAG-GCATGTCTG
1 TGATTTCGTGTAAGACCATGTCTG
49196828 AGAAGTTGGC
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 31 0.58
43 22 0.42
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAACATATA
Found at i:49204901 original size:27 final size:27
Alignment explanation
Indices: 49204861--49205017 Score: 208
Period size: 27 Copynumber: 5.8 Consensus size: 27
49204851 TAAACACGTA
49204861 ATGAAA-AAATTGCCTTTGTGGCGAATC
1 ATGAAAGAAA-TGCCTTTGTGGCGAATC
49204888 ATGAAAGAAATGCCTTTGTGGCGAATC
1 ATGAAAGAAATGCCTTTGTGGCGAATC
* * * *
49204915 ATGAAAGAAATGTCTTTATAGTGAATC
1 ATGAAAGAAATGCCTTTGTGGCGAATC
* * *
49204942 ATGAAAGAATTGCCTTTGTGGTGTATC
1 ATGAAAGAAATGCCTTTGTGGCGAATC
** *
49204969 ATGAAAGAGTTGCCTTTGTGGTGAATC
1 ATGAAAGAAATGCCTTTGTGGCGAATC
49204996 ATGAAAGAAATGCCTTTGTGGC
1 ATGAAAGAAATGCCTTTGTGGC
49205018 AGATTATGAA
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
27 112 0.97
28 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (27 bp):
ATGAAAGAAATGCCTTTGTGGCGAATC
Found at i:49205027 original size:81 final size:81
Alignment explanation
Indices: 49204861--49205012 Score: 241
Period size: 81 Copynumber: 1.9 Consensus size: 81
49204851 TAAACACGTA
49204861 ATGAAAAAATTGCCTTTGTGGCGAATCATGAAAGAAATGCCTTTGTGGCGAATCATGAAAGAAAT
1 ATGAAAAAATTGCCTTTGTGGCGAATCATGAAAGAAATGCCTTTGTGGCGAATCATGAAAGAAAT
*
49204926 GTCTTTATAGTGAATC
66 GCCTTTATAGTGAATC
* * * ** *
49204942 ATGAAAGAATTGCCTTTGTGGTGTATCATGAAAGAGTTGCCTTTGTGGTGAATCATGAAAGAAAT
1 ATGAAAAAATTGCCTTTGTGGCGAATCATGAAAGAAATGCCTTTGTGGCGAATCATGAAAGAAAT
49205007 GCCTTT
66 GCCTTT
49205013 GTGGCAGATT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.32
Consensus pattern (81 bp):
ATGAAAAAATTGCCTTTGTGGCGAATCATGAAAGAAATGCCTTTGTGGCGAATCATGAAAGAAAT
GCCTTTATAGTGAATC
Found at i:49207608 original size:79 final size:81
Alignment explanation
Indices: 49207472--49207656 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
49207462 TTGAATGATG
* *
49207472 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
49207536 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
49207551 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GAGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGA-CTAAGAT-CCGAAGGC
*
49207612 AATTGTGCGAGTTACTATA
63 AATTGTGCGAGATACTATA
* *
49207631 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49207657 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:49207670 original size:40 final size:40
Alignment explanation
Indices: 49207473--49207656 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
49207463 TGAATGATGT
* * * *
49207473 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
49207513 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
49207553 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
49207591 TCCGAGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
49207632 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49207657 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:49207687 original size:79 final size:79
Alignment explanation
Indices: 49207524--49207689 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
49207514 CGGACTAAGA
* * **
49207524 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
* *
49207589 AATCCGAGTTAAGT
66 AATCCGAGTCAAAT
* * *
49207603 CCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
*
49207666 CTATATCCG-GTCAAAT
63 CTAAATCCGAGTCAAAT
49207682 TCCGAAGG
1 TCCGAAGG
49207690 TACGTGATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 26 0.36
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
AATCCGAGTCAAAT
Found at i:49215001 original size:17 final size:18
Alignment explanation
Indices: 49214979--49215026 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
49214969 AAATCGAAAG
49214979 AAGAAAAAGAGAGATG-A
1 AAGAAAAAGAGAGATGAA
**
49214996 AAGAAAAAGA-ACTTGAA
1 AAGAAAAAGAGAGATGAA
49215013 AAGAAAAA-AGAGAT
1 AAGAAAAAGAGAGAT
49215027 TGAGATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.08
Consensus pattern (18 bp):
AAGAAAAAGAGAGATGAA
Found at i:49215029 original size:18 final size:18
Alignment explanation
Indices: 49214979--49215029 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
49214969 AAATCGAAAG
49214979 AAGAAAAAGAGAGA-TG-A
1 AAGAAAAA-AGAGATTGAA
49214996 AAG-AAAAAGA-ACTTGAA
1 AAGAAAAAAGAGA-TTGAA
49215013 AAGAAAAAAGAGATTGA
1 AAGAAAAAAGAGATTGA
49215030 GATTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 1 0.03
15 3 0.10
16 6 0.21
17 7 0.24
18 11 0.38
19 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.24, T:0.10
Consensus pattern (18 bp):
AAGAAAAAAGAGATTGAA
Found at i:49224568 original size:15 final size:15
Alignment explanation
Indices: 49224548--49224603 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
49224538 GTATCTTGGG
49224548 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
49224563 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
49224578 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
49224593 TTTCTTTATTC
1 TTTCTTTATTC
49224604 GGTTTTCCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49224578 original size:30 final size:30
Alignment explanation
Indices: 49224544--49224603 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
49224534 TATCGTATCT
*
49224544 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
49224574 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
49224604 GGTTTTCCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.15, G:0.17, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:49226030 original size:13 final size:13
Alignment explanation
Indices: 49226012--49226045 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
49226002 GGGTAAAATG
49226012 AATTAAAATACAA
1 AATTAAAATACAA
49226025 AATTAAAATACAA
1 AATTAAAATACAA
49226038 AATTAAAA
1 AATTAAAA
49226046 GCCAATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (13 bp):
AATTAAAATACAA
Found at i:49226545 original size:46 final size:46
Alignment explanation
Indices: 49226492--49226667 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
49226482 TATTTGGGCA
* *
49226492 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
49226538 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * *
49226585 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
49226631 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49226668 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 6 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:49226641 original size:93 final size:93
Alignment explanation
Indices: 49226488--49226659 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
49226478 GGGATATTTG
* * *
49226488 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
49226553 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* ** *
49226581 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
*
49226646 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
49226660 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49228201 original size:58 final size:57
Alignment explanation
Indices: 49228138--49228250 Score: 131
Period size: 58 Copynumber: 2.0 Consensus size: 57
49228128 GCATGAATAT
**
49228138 AATATG-ATCTGGGCCTA-ATGAGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAAT-TGGGCC-AGATGAGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
* * * *
49228196 AATATGAATTGGGCCAGATGGGGCATTTGAATAAGATTGGGCCTAGTGGGTCATA
1 AATATGAATTGGGCCAGATGAGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
49228251 TGCATGTATG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
57 20 0.43
58 25 0.53
59 2 0.04
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (57 bp):
AATATGAATTGGGCCAGATGAGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:49228217 original size:29 final size:30
Alignment explanation
Indices: 49228138--49228250 Score: 103
Period size: 29 Copynumber: 3.9 Consensus size: 30
49228128 GCATGAATAT
* *
49228138 AATATG-ATCTGGGCCTA-ATGAGCCATATG
1 AATATGAAT-TGGGCCTAGATGGGCCATAAG
*
49228167 AATGTGAATTGGGCCTAG-TGGGCCATAAG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
* **
49228196 AATATGAATTGGGCC-AGATGGGGCATTTG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
* *
49228225 AATAAG-ATTGGGCCTAG-TGGGTCATA
1 AATATGAATTGGGCCTAGATGGGCCATA
49228251 TGCATGTATG
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
28 17 0.24
29 51 0.73
30 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (30 bp):
AATATGAATTGGGCCTAGATGGGCCATAAG
Found at i:49229323 original size:17 final size:18
Alignment explanation
Indices: 49229290--49229324 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49229280 TTTTAAGAAG
49229290 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
49229308 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
49229325 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:49233437 original size:40 final size:40
Alignment explanation
Indices: 49233371--49233457 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
49233361 ATTATGTTTG
*
49233371 GCACTTAATGTGCATATAGAGATAGCTTCGGCTATATAAA
1 GCACTTAATGTGCATATAGAGATAGCTTCAGCTATATAAA
* **
49233411 GCACTTAGTGTGCGA-ATCAGAG-TAGCTTCAGCTATATATG
1 GCACTTAATGTGC-ATAT-AGAGATAGCTTCAGCTATATAAA
49233451 GCACTTA
1 GCACTTA
49233458 CTATGCGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 36 0.88
41 5 0.12
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (40 bp):
GCACTTAATGTGCATATAGAGATAGCTTCAGCTATATAAA
Found at i:49233465 original size:40 final size:41
Alignment explanation
Indices: 49233388--49233465 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
49233378 ATGTGCATAT
* * *
49233388 AGAGATAGCTTCGGCTATATAAAGCACTTAGTGTGCGAATC
1 AGAGATAGCTTCAGCTATATAAAGCACTTACTATGCGAATC
**
49233429 AGAG-TAGCTTCAGCTATATATGGCACTTACTATGCGA
1 AGAGATAGCTTCAGCTATATAAAGCACTTACTATGCGA
49233466 GACTAAGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (41 bp):
AGAGATAGCTTCAGCTATATAAAGCACTTACTATGCGAATC
Found at i:49234154 original size:6 final size:6
Alignment explanation
Indices: 49234124--49234321 Score: 145
Period size: 6 Copynumber: 32.2 Consensus size: 6
49234114 AAGAAACATT
* *
49234124 ATCAGA A-CTAGA ATCA-A AACGAGA ATCAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
49234172 ATCAGGTA A-CAGA ATTAGA ATCAGA ACCAGA ATCAGA ATTAGGT AGCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA
* * *
49234222 ATCAGA ATCAGT ATCAGGTA A-CAGA ATTAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
49234271 ATTAGGT AGCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCA-GA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
49234321 A
1 A
49234322 GTATACACCC
Statistics
Matches: 149, Mismatches: 28, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
5 10 0.07
6 117 0.79
7 19 0.13
8 3 0.02
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:49234191 original size:25 final size:24
Alignment explanation
Indices: 49234124--49234321 Score: 145
Period size: 25 Copynumber: 8.0 Consensus size: 24
49234114 AAGAAACATT
*
49234124 ATCAGAA-CTAGAATCA-AAACGAGA
1 ATCAGAATC-AGAATCAGAATC-AGA
*
49234148 ATCAGAATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGAATCAGA
*
49234172 ATCAGGTAA-CAGAATTAGAATCAGA
1 ATCA-G-AATCAGAATCAGAATCAGA
* * * *
49234197 ACCAGAATCAGAATTAGGTAGCAGA
1 ATCAGAATCAGAATCA-GAATCAGA
*
49234222 ATCAGAATCAGTATCAGGTAA-CAGA
1 ATCAGAATCAGAATCA-G-AATCAGA
* *
49234247 ATTAGAATCAGAACCAGAATCAGA
1 ATCAGAATCAGAATCAGAATCAGA
* * * *
49234271 ATTAGGTAGCAGAATCAGAATCAGT
1 ATCA-GAATCAGAATCAGAATCAGA
49234296 ATCAGGTAA-CAGAATCAGAATCAGA
1 ATCA-G-AATCAGAATCAGAATCAGA
49234321 A
1 A
49234322 GTATACACCC
Statistics
Matches: 143, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
23 4 0.03
24 38 0.27
25 97 0.68
26 4 0.03
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:49234192 original size:37 final size:37
Alignment explanation
Indices: 49234145--49234300 Score: 138
Period size: 37 Copynumber: 4.5 Consensus size: 37
49234135 AATCAAAACG
*
49234145 AGAATCAGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
* *
49234182 AGAATTAGAATCAGAACCAGAATCAG-A--A--T--T
1 AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
*
49234212 AG--GTAG---CAGAATCAGAATCAGTATCAGGTAAC
1 AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
* * * *
49234244 AGAATTAGAATCAGAACCAGAATCAGAATTAGGTAGC
1 AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
* *
49234281 AGAATCAGAATCAGTATCAG
1 AGAATTAGAATCAGAATCAG
49234301 GTAACAGAAT
Statistics
Matches: 93, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
25 14 0.15
26 1 0.01
28 4 0.04
30 3 0.03
32 3 0.03
34 4 0.04
36 1 0.01
37 63 0.68
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (37 bp):
AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:49234232 original size:62 final size:62
Alignment explanation
Indices: 49234156--49234321 Score: 323
Period size: 62 Copynumber: 2.7 Consensus size: 62
49234146 GAATCAGAAT
49234156 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAG
1 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAG
49234218 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAG
1 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAG
*
49234280 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAA
49234322 GTATACACCC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAG
Found at i:49235913 original size:24 final size:24
Alignment explanation
Indices: 49235881--49235939 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
49235871 AAATCAGTAC
*
49235881 ACATAGTGCCATTCAATTCCGCAA
1 ACATAGTGCCATTCAAATCCGCAA
*
49235905 ACATAGTGCCATTCAAATCCGCAC
1 ACATAGTGCCATTCAAATCCGCAA
*
49235929 ACTTAGTGCCA
1 ACATAGTGCCA
49235940 ATGTTGACCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.24
Consensus pattern (24 bp):
ACATAGTGCCATTCAAATCCGCAA
Found at i:49236815 original size:27 final size:27
Alignment explanation
Indices: 49236785--49237059 Score: 315
Period size: 27 Copynumber: 10.2 Consensus size: 27
49236775 GGTAAAATGG
* * * *
49236785 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
49236812 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
49236838 GTAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
49236866 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
49236893 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
49236919 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * * *
49236947 TATTTCTACTCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
49236974 TAATTCTACCCTATAGGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
49237000 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * *
49237027 GTATTTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
49237055 TAATT
1 TAATT
49237060 TTGTAAATCG
Statistics
Matches: 212, Mismatches: 29, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 210 0.99
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:49236906 original size:81 final size:81
Alignment explanation
Indices: 49236787--49237059 Score: 458
Period size: 81 Copynumber: 3.4 Consensus size: 81
49236777 TAAAATGGTA
* * *
49236787 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
49236851 ATAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
49236867 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
49236932 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
49236948 ATTTCTACTCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
49237013 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCGGT
*
49237029 ATTTCTACCCTACAAGGGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGATAATT
49237060 TTGTAAATCG
Statistics
Matches: 183, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
80 4 0.02
81 179 0.98
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:49237075 original size:54 final size:54
Alignment explanation
Indices: 49236783--49237059 Score: 349
Period size: 54 Copynumber: 5.1 Consensus size: 54
49236773 GGGGTAAAAT
* * * * *
49236783 GGTAATTTTACCCCACAAGGGTATCTC-GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTC
* * * *
49236837 AGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * *
49236891 GATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * * * * *
49236945 GGTATTTCTACTCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* *
49236999 AGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
49237053 GGTAATT
1 GGTAATT
49237060 TTGTAAATCG
Statistics
Matches: 189, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 188 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
Found at i:49237084 original size:81 final size:81
Alignment explanation
Indices: 49236828--49237089 Score: 307
Period size: 81 Copynumber: 3.2 Consensus size: 81
49236818 TACCCTACAG
* *
49236828 GGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
**
49236893 TAA--TTCTACCCTAC-A
66 TAATTTTCTA-AAT-CGA
* *
49236908 GGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACTCTACAAGGGTATTTCG
1 -GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
* *** *
49236973 GTAATTCTACCCTATAG-
65 GTAATT-TTCTAAATCGA
* *
49236990 GGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
*
49237055 TAATTTTGTAAATCGA
66 TAATTTTCTAAATCGA
***
49237071 GGGTAAAACAGTAATTCTA
1 GGGTATTTCAGTAATTCTA
49237090 TAAATCGAGG
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 4 0.03
81 147 0.95
83 1 0.01
84 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
TAATTTTCTAAATCGA
Found at i:49237318 original size:27 final size:27
Alignment explanation
Indices: 49237054--49237310 Score: 361
Period size: 27 Copynumber: 9.5 Consensus size: 27
49237044 GGGTATTTCG
* *
49237054 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
*
49237081 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACA
* * * *
49237108 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACA
*
49237135 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
* * *
49237162 GTAATTTTGTAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
*
49237189 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
49237216 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
* * *
49237243 ATAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACA
* *
49237270 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACA
49237297 GTAATTCTATAAAT
1 GTAATTCTATAAAT
49237311 TGATGGTACT
Statistics
Matches: 207, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 207 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACA
Found at i:49237405 original size:81 final size:81
Alignment explanation
Indices: 49237315--49237492 Score: 198
Period size: 81 Copynumber: 2.2 Consensus size: 81
49237305 ATAAATTGAT
* * ** * *
49237315 GGTACTTTGGTAATTTTACAAGTCGAGG-GTATTTCAATAATTTTACAGGCCGAGGGTATT-TCA
1 GGTATTTTGGTAATTTTACAA-ACGAGGAGTATTTCAATAATTTTACAAACCAACGGTATTCT-A
* *
49237378 GTAATTTCACAAATCAGG
64 GAAATTTCACAAACCAGG
* *** *
49237396 GGTATTTTGGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTATAAACCAACGGTATTCTAGA
1 GGTATTTTGGTAATTTTACAAACGAGGAGTATTTCAATAATTTTACAAACCAACGGTATTCTAGA
*
49237461 AATTTTACAAACCAGG
66 AATTTCACAAACCAGG
49237477 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
49237493 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 4 0.05
81 76 0.94
82 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACGAGGAGTATTTCAATAATTTTACAAACCAACGGTATTCTAGA
AATTTCACAAACCAGG
Found at i:49237499 original size:27 final size:27
Alignment explanation
Indices: 49237315--49237492 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
49237305 ATAAATTGAT
* **
49237315 GGTACTTTGGTAATTTTACAAGTC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
*** **
49237342 GGTATTTCAATAATTTTACAGGCC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
** * *
49237369 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
49237396 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * **
49237423 AGTATTTTGGTAATTTTATAAACCAAC
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
49237450 GGTATTCTAGAAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
49237477 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
49237493 GGTAAACTAA
Statistics
Matches: 119, Mismatches: 31, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
27 118 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:49239958 original size:31 final size:32
Alignment explanation
Indices: 49239923--49239982 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
49239913 TGGTATACAC
*
49239923 AAAGTATACCTAACCTTTCCAAG-TGTACAAA
1 AAAGTATACATAACCTTTCCAAGTTGTACAAA
* *
49239954 AAAGTGTACATAACCTTTTCAAGTTGTAC
1 AAAGTATACATAACCTTTCCAAGTTGTAC
49239983 CATTTAGGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (32 bp):
AAAGTATACATAACCTTTCCAAGTTGTACAAA
Found at i:49241364 original size:27 final size:26
Alignment explanation
Indices: 49241324--49241383 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
49241314 CCACATATAT
* *
49241324 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
49241350 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
49241377 ATATCTG
1 ATATCTG
49241384 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:49250479 original size:30 final size:30
Alignment explanation
Indices: 49250445--49250505 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49250435 TCCTTAACTC
49250445 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
49250475 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
49250505 A
1 A
49250506 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:49253225 original size:40 final size:40
Alignment explanation
Indices: 49253142--49253404 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
49253132 TTGAATGCTG
* * * * * *
49253142 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
49253182 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
49253222 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
49253262 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
49253302 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
49253342 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
49253381 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
49253405 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:49253424 original size:79 final size:80
Alignment explanation
Indices: 49253181--49253439 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
49253171 AAGTGAATAT
* * * * * * *
49253181 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
49253245 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
49253261 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
49253326 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
49253341 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
49253405 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
49253420 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
49253440 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:49261165 original size:40 final size:40
Alignment explanation
Indices: 49261082--49261344 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
49261072 TTGAATGCTG
* * * * * *
49261082 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
49261122 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
49261162 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
49261202 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
49261242 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
49261282 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
49261321 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
49261345 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:49261364 original size:79 final size:80
Alignment explanation
Indices: 49261121--49261379 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
49261111 AAGTGAATAT
* * * * * * *
49261121 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
49261185 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
49261201 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
49261266 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
49261281 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
49261345 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
49261360 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
49261380 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:49263203 original size:25 final size:26
Alignment explanation
Indices: 49263156--49263213 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
49263146 CACATTTTTC
49263156 TTTA-TTTATCTTCTTTAAGTACT-T
1 TTTATTTTATCTTCTTTAAGTACTAT
*
49263180 TTTATTTTATTTTCATTTAA-TACTAT
1 TTTATTTTATCTTC-TTTAAGTACTAT
*
49263206 TTCATTTT
1 TTTATTTT
49263214 TAGGTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTTTATCTTCTTTAAGTACTAT
Found at i:49280670 original size:32 final size:32
Alignment explanation
Indices: 49280629--49280694 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
49280619 TTAGAGTTAG
*
49280629 CAGCTATTGTGTTTGCGTTAAAGATTTGGCAT
1 CAGCTATTGTGTTTGCGTGAAAGATTTGGCAT
*
49280661 CAGCTATTGTGTTTGTGTGAAAGATTTGGCAT
1 CAGCTATTGTGTTTGCGTGAAAGATTTGGCAT
49280693 CA
1 CA
49280695 TTATCTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (32 bp):
CAGCTATTGTGTTTGCGTGAAAGATTTGGCAT
Found at i:49282981 original size:56 final size:56
Alignment explanation
Indices: 49282895--49283014 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49282885 ACAAGGGATG
49282895 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49282951 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49283007 ATGGGCAA
1 ATGGGCAA
49283015 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49284490 original size:47 final size:47
Alignment explanation
Indices: 49284436--49284983 Score: 804
Period size: 47 Copynumber: 11.6 Consensus size: 47
49284426 TATTTGAATA
*
49284436 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
49284483 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284532 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
49284581 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284628 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284675 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
49284722 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284771 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284818 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
49284865 AATGTGAACA-TG--TGTATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
49284910 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
49284957 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49284984 TCCCGAAGGG
Statistics
Matches: 468, Mismatches: 23, Indels: 20
0.92 0.05 0.04
Matches are distributed among these distances:
44 1 0.00
45 41 0.09
46 1 0.00
47 285 0.61
48 1 0.00
49 138 0.29
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:49284755 original size:143 final size:141
Alignment explanation
Indices: 49284436--49284962 Score: 814
Period size: 143 Copynumber: 3.7 Consensus size: 141
49284426 TATTTGAATA
*
49284436 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * * *
49284501 TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--CATATATGAGATAAGGCCG
*
49284565 AATGGCCGATGTGATG
126 AATGGCCAATGTGATG
*
49284581 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATAT
*
49284645 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATG
49284710 GCCAATGTGATG
130 GCCAATGTGATG
*
49284722 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
49284786 ATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAA
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAA
49284851 TGGCCAATGTGATG
128 TGGCCAATGTGATG
*
49284865 AATGTGAACA-TG--TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
49284927 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
49284963 GAAGTGTATA
Statistics
Matches: 364, Mismatches: 12, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
138 1 0.00
139 80 0.22
141 43 0.12
143 181 0.50
144 2 0.01
145 56 0.15
146 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
CCAATGTGATG
Found at i:49284761 original size:190 final size:189
Alignment explanation
Indices: 49284436--49284983 Score: 856
Period size: 190 Copynumber: 2.9 Consensus size: 189
49284426 TATTTGAATA
*
49284436 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG---A
*
49284499 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
61 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
49284564 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
126 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49284628 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-ATATA
*
49284693 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
65 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
* *
49284758 GGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
130 GGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
49284818 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-TGTAT
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGATATAT
49284882 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATG
* * *
49284945 GCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49284984 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
185 1 0.00
186 55 0.17
188 43 0.13
190 177 0.53
191 1 0.00
192 52 0.16
193 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (189 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:49287589 original size:157 final size:159
Alignment explanation
Indices: 49287256--49287727 Score: 544
Period size: 157 Copynumber: 3.0 Consensus size: 159
49287246 CGAATGATGT
** * *
49287256 CCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCGTATCCGGACTAAGAT-CCGAAG-GCA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGCA
** * * * * ** ** * *
49287317 TTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTATTATAACCGGG
63 TTCATGCTAGTGA-TATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGA-TAT-ACCGGG
49287381 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAA
125 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAA
49287416 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
* ** *
49287481 ATGCTAGTGATGTATCCGGGCT-AAGTCCGAAGAGCATTCATGCTAGTGATGTACCGGGCTAAGT
66 ATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATACCGGGCTAAGT
*
49287545 -CCGAAGAGCATTCATGCTAGTGATGTAT
131 CCCGAAGAGCATTCATGCTAGTGATGTAA
* *
49287573 CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
* * * * * * *
49287638 GTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATTCGGGCTAGG
66 ATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATA-CCGGGCTAAG
* *
49287703 TCCCGAAGAGCAATCATGCTGGTGA
130 TCCCGAAGAGCATTCATGCTAGTGA
49287728 CGTGTATTCG
Statistics
Matches: 269, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
157 109 0.41
158 37 0.14
159 19 0.07
160 79 0.29
161 19 0.07
162 6 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
ATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATACCGGGCTAAGT
CCCGAAGAGCATTCATGCTAGTGATGTAA
Found at i:49287600 original size:197 final size:199
Alignment explanation
Indices: 49287255--49287728 Score: 566
Period size: 197 Copynumber: 2.4 Consensus size: 199
49287245 TCGAATGATG
* * *
49287255 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCGTATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAG-TCCGAAGAGCA
** * * * ** *
49287317 TTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAACCGGGC
63 TTCATGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTGATTAT-ACCGGGC
49287382 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTAACCGGGCTAAGTCCCGAAGAGCATTCATGCTA
127 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTAACCGGGCTAAGTCCCGAAGAGCATTCATGCTA
*
49287447 GTGATGTA
192 GTGATATA
*
49287455 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
** *
49287520 ATGCTAGTGA-TGTA-CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTAT-CCGGGCTA
66 ATGCTAGTGACTAAATCCGGGCTAAGTCCCGAAG-GCATTCATGCGAGTGAT-TATACCGGGCTA
* * * *
49287581 AGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
129 AGTCCCGAAGAGCATTCATGCTAGTGATGTAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
49287646 GATATA
194 GATATA
* ** * * * * * *
49287652 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATTCGGGCTAGGTCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATT
*
49287717 CATGCTGGTGAC
65 CATGCTAGTGAC
49287729 GTGTATTCGG
Statistics
Matches: 236, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
197 123 0.52
198 44 0.19
199 12 0.05
200 44 0.19
201 7 0.03
202 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (199 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
ATGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTGATTATACCGGGCTAAG
TCCCGAAGAGCATTCATGCTAGTGATGTAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
TATA
Found at i:49287682 original size:40 final size:40
Alignment explanation
Indices: 49287255--49287727 Score: 550
Period size: 40 Copynumber: 11.9 Consensus size: 40
49287245 TCGAATGATG
** *
49287255 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTA
* ** * * **
49287295 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TGTA
* ** * *
49287335 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTAT-TA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
49287373 TAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 T--CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
*
49287415 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
49287455 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
49287495 TCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
49287534 -CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
*
49287572 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* * *
49287612 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* ** * * * *
49287652 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* * * *
49287692 TTCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
49287728 CGTGTATTCG
Statistics
Matches: 389, Mismatches: 35, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
38 40 0.10
39 40 0.10
40 287 0.74
41 20 0.05
42 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:49289078 original size:56 final size:56
Alignment explanation
Indices: 49288992--49289111 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49288982 ACAAGGGATG
49288992 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49289048 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49289104 ATGGGCAA
1 ATGGGCAA
49289112 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49290635 original size:49 final size:47
Alignment explanation
Indices: 49290556--49291201 Score: 953
Period size: 47 Copynumber: 13.6 Consensus size: 47
49290546 TATTTGAATA
*
49290556 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290603 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290652 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290701 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
49290750 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
49290799 AATGTGAAAGTG--TATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290844 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
49290891 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290940 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49290987 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
49291034 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
49291081 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
49291128 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
49291175 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49291202 TCCCGAAGGG
Statistics
Matches: 564, Mismatches: 23, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
45 42 0.07
46 4 0.01
47 282 0.50
48 1 0.00
49 234 0.41
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:49290797 original size:22 final size:22
Alignment explanation
Indices: 49290769--49290842 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
49290759 GTGTATATAT
49290769 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
49290791 ATGTGATGAATG-TGAAAGTG-TA
1 ATGTGAT-AAGGCCGAATG-GCCA
*
49290813 TGTGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
49290836 ATGTGAT
1 ATGTGAT
49290843 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 22 0.59
23 15 0.41
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:49294097 original size:40 final size:42
Alignment explanation
Indices: 49294007--49294182 Score: 139
Period size: 41 Copynumber: 4.3 Consensus size: 42
49293997 TGATTATGTT
* * *
49294007 TGGCACTTAGTGTGCG-TAT-AGAGATAGCCTCGGCTATATA
1 TGGCACTTAGTGTGCGAGATCAGAGATAGCTTCGACTATATA
** **
49294047 AAGCTGTTAGTGTGCGA-ATCAGA-ATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCGAGATCAGAGATAGCTTCGACTATATA
* * * *
49294087 TGGCACTTAGTGTGCGAGA-CTGAGATAGCTTTGGCTATAAA
1 TGGCACTTAGTGTGCGAGATCAGAGATAGCTTCGACTATATA
* * * * * *
49294128 AGGCACTTAGTGTGAGAGATTATA-ATAGCTTCAACTATGCTA
1 TGGCACTTAGTGTGCGAGATCAGAGATAGCTTCGACTAT-ATA
*
49294170 TGGCACCTAGTGT
1 TGGCACTTAGTGT
49294183 AAGAGAGATC
Statistics
Matches: 104, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
40 45 0.43
41 46 0.44
42 13 0.12
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGGCACTTAGTGTGCGAGATCAGAGATAGCTTCGACTATATA
Found at i:49294123 original size:81 final size:82
Alignment explanation
Indices: 49294007--49294182 Score: 198
Period size: 81 Copynumber: 2.2 Consensus size: 82
49293997 TGATTATGTT
* ** *
49294007 TGGCACTTAGTGTGCGTATAGAGATAGCCTCGGCTATATAAA-GCTGTTAGTGTGCGA-ATCAGA
1 TGGCACTTAGTGTGCGGATAGAGATAGCCTCGGCTATA-AAAGGCACTTAGTGTGAGAGATCAGA
*
49294070 ATAGCTTCGACTAT-ATA
65 ATAGCTTCAACTATGATA
* * * *
49294087 TGGCACTTAGTGTGCGAGACT-GAGATAGCTTTGGCTATAAAAGGCACTTAGTGTGAGAGATTAT
1 TGGCACTTAGTGTGCG-GA-TAGAGATAGCCTCGGCTATAAAAGGCACTTAGTGTGAGAGATCAG
*
49294151 AATAGCTTCAACTATGCTA
64 AATAGCTTCAACTATGATA
*
49294170 TGGCACCTAGTGT
1 TGGCACTTAGTGT
49294183 AAGAGAGATC
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
80 19 0.24
81 29 0.36
82 18 0.22
83 14 0.17
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (82 bp):
TGGCACTTAGTGTGCGGATAGAGATAGCCTCGGCTATAAAAGGCACTTAGTGTGAGAGATCAGAA
TAGCTTCAACTATGATA
Found at i:49294133 original size:41 final size:40
Alignment explanation
Indices: 49294008--49294147 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 40
49293998 GATTATGTTT
* *
49294008 GGCACTTAGTGTGCG-TATAGAGATAGCCTCGGCTATATAAA
1 GGCACTTAGTGTGCGAGAT-GAGATAGCTTCGGCTATA-AAA
** * * * *
49294049 -GCTGTTAGTGTGCGA-ATCAGAATAGCTTCGACTATATAT
1 GGCACTTAGTGTGCGAGATGAG-ATAGCTTCGGCTATAAAA
*
49294088 GGCACTTAGTGTGCGAGACTGAGATAGCTTTGGCTATAAAA
1 GGCACTTAGTGTGCGAGA-TGAGATAGCTTCGGCTATAAAA
*
49294129 GGCACTTAGTGTGAGAGAT
1 GGCACTTAGTGTGCGAGAT
49294148 TATAATAGCT
Statistics
Matches: 79, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
39 3 0.04
40 41 0.52
41 32 0.41
42 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (40 bp):
GGCACTTAGTGTGCGAGATGAGATAGCTTCGGCTATAAAA
Found at i:49294530 original size:27 final size:27
Alignment explanation
Indices: 49294497--49294622 Score: 137
Period size: 27 Copynumber: 4.6 Consensus size: 27
49294487 TCATCAGGAA
*
49294497 CCCATAGGGTAAAATGATCGAAATACC
1 CCCATAGGGTAAAATGACCGAAATACC
*** *
49294524 TTTATAGGGTAAAATGACCAAAATACC
1 CCCATAGGGTAAAATGACCGAAATACC
* *
49294551 CCCATAAGGTAAAATTACCGAAATACC
1 CCCATAGGGTAAAATGACCGAAATACC
*
49294578 CCCATAGGGGTAAAATGA-CTATAATACC
1 CCCATA-GGGTAAAATGACCGA-AATACC
* *
49294606 CCTATAAGGTAAAATGA
1 CCCATAGGGTAAAATGA
49294623 ATGTTTGCCC
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
27 61 0.75
28 20 0.25
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
CCCATAGGGTAAAATGACCGAAATACC
Found at i:49294585 original size:54 final size:55
Alignment explanation
Indices: 49294497--49294622 Score: 164
Period size: 55 Copynumber: 2.3 Consensus size: 55
49294487 TCATCAGGAA
* * ***
49294497 CCCATAGGGTAAAATGATCGAAATACCTTTATA-GGGTAAAATGACCAAAATACC
1 CCCATAAGGTAAAATGACCGAAATACCCCCATAGGGGTAAAATGACCAAAATACC
* * *
49294551 CCCATAAGGTAAAATTACCGAAATACCCCCATAGGGGTAAAATGACTATAATACC
1 CCCATAAGGTAAAATGACCGAAATACCCCCATAGGGGTAAAATGACCAAAATACC
*
49294606 CCTATAAGGTAAAATGA
1 CCCATAAGGTAAAATGA
49294623 ATGTTTGCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
54 27 0.44
55 34 0.56
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (55 bp):
CCCATAAGGTAAAATGACCGAAATACCCCCATAGGGGTAAAATGACCAAAATACC
Found at i:49294664 original size:27 final size:27
Alignment explanation
Indices: 49294613--49294723 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
49294603 ACCCCTATAA
49294613 GGTAAAATGA-A-TGTTTGCCCTTATGT
1 GGTAAAATGACAGT-TTTGCCCTTATGT
*
49294639 GTTAAAATGACAGTTTTGCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* * *
49294666 GGTAAAATGACGGTGTTGCCCTTATGA
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
49294693 GGTAAAATAACTA-TTTTGCCCTTATGT
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
49294720 GGTA
1 GGTA
49294724 GGATGACTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.12
27 63 0.86
28 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTAAAATGACAGTTTTGCCCTTATGT
Found at i:49294730 original size:54 final size:54
Alignment explanation
Indices: 49294613--49294723 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
49294603 ACCCCTATAA
** * * *
49294613 GGTAAAATGAATGT-TTGCCCTTATGTGTTAAAATGACAGTTTTGCCCTTATGT
1 GGTAAAATGACGGTGTTGCCCTTATGAGGTAAAATAACAGTTTTGCCCTTATGT
49294666 GGTAAAATGACGGTGTTGCCCTTATGAGGTAAAATAACTA-TTTTGCCCTTATGT
1 GGTAAAATGACGGTGTTGCCCTTATGAGGTAAAATAAC-AGTTTTGCCCTTATGT
49294720 GGTA
1 GGTA
49294724 GGATGACTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 12 0.24
54 38 0.75
55 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (54 bp):
GGTAAAATGACGGTGTTGCCCTTATGAGGTAAAATAACAGTTTTGCCCTTATGT
Found at i:49295034 original size:23 final size:24
Alignment explanation
Indices: 49295008--49295052 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
49294998 ATATCCCCAC
*
49295008 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
49295031 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
49295053 GTAGCACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:49299124 original size:39 final size:40
Alignment explanation
Indices: 49299010--49299191 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
49299000 GCTACTCGTT
*
49299010 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
49299050 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
49299090 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
49299129 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49299170 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
49299192 AGACATCATT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49299154 original size:79 final size:80
Alignment explanation
Indices: 49299012--49299191 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
49299002 TACTCGTTCA
* *
49299012 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49299077 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
49299092 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
49299154 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
49299171 AAAGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
49299192 AGACATCATT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.68
80 24 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:49307175 original size:78 final size:80
Alignment explanation
Indices: 49307034--49307213 Score: 224
Period size: 78 Copynumber: 2.3 Consensus size: 80
49307024 TACTCGTTCA
* **
49307034 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49307099 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
49307114 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
49307176 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
49307192 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
49307214 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 50 0.57
79 22 0.25
80 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:49307215 original size:40 final size:40
Alignment explanation
Indices: 49307013--49307215 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
49307003 CGGAATTTAA
** *
49307013 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49307053 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49307093 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49307132 CCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49307171 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49307211 CCGGA
1 CCGGA
49307216 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.01
38 22 0.16
39 21 0.15
40 84 0.60
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49312350 original size:27 final size:28
Alignment explanation
Indices: 49312309--49312479 Score: 167
Period size: 27 Copynumber: 6.3 Consensus size: 28
49312299 CCTAAATTAA
* *
49312309 TAAAATGACTATTTTTCTCTTATAG-GG
1 TAAAATGACTATTTTGCCCTTATAGAGG
* *
49312336 TAAAATGATTGTTTTG-CCTT-TACGAGG
1 TAAAATGACTATTTTGCCCTTATA-GAGG
* * * *
49312363 TAAAATGATTGTTATGCCCTTAT-GTGG
1 TAAAATGACTATTTTGCCCTTATAGAGG
*
49312390 TAAAATGACTATTTTGCCCTTGTA-AGG
1 TAAAATGACTATTTTGCCCTTATAGAGG
* *
49312417 CAAAATTACTATTTTGCCCTTAT-GAGG
1 TAAAATGACTATTTTGCCCTTATAGAGG
*
49312444 TAAAATGACTATTTTTGCCCTTAT-GTGG
1 TAAAATGACTA-TTTTGCCCTTATAGAGG
49312472 TAAAATGA
1 TAAAATGA
49312480 TTGTTTTGTC
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.02
26 4 0.03
27 86 0.72
28 27 0.22
29 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (28 bp):
TAAAATGACTATTTTGCCCTTATAGAGG
Found at i:49312392 original size:54 final size:53
Alignment explanation
Indices: 49312334--49312513 Score: 166
Period size: 54 Copynumber: 3.3 Consensus size: 53
49312324 TCTCTTATAG
*
49312334 GGTAAAATGATTGTTTTGCCTTTACGAGGTAAAATGATTGTTATGCCCTTATGT
1 GGTAAAATGATTGTTTTGCCTTTA-GAGGTAAAATGATTGTTTTGCCCTTATGT
* * * * * * *
49312388 GGTAAAATGACTATTTTGCCCTTGTA-AGGCAAAATTACTATTTTGCCCTTATGA
1 GGTAAAATGATTGTTTTG-CCTT-TAGAGGTAAAATGATTGTTTTGCCCTTATGT
* * * * *
49312442 GGTAAAATGACTAT-TTTTGCCCTTATGTGGTAAAATGATTGTTTTGTCCTTTTAT
1 GGTAAAATGA-T-TGTTTTGCCTTTA-GAGGTAAAATGATTGTTTTGCCCTTATGT
*
49312497 GGTAAGATGATTGTTTT
1 GGTAAAATGATTGTTTT
49312514 ACCCCTATGT
Statistics
Matches: 99, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
53 3 0.03
54 56 0.57
55 37 0.37
56 3 0.03
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (53 bp):
GGTAAAATGATTGTTTTGCCTTTAGAGGTAAAATGATTGTTTTGCCCTTATGT
Found at i:49312499 original size:27 final size:27
Alignment explanation
Indices: 49312334--49312513 Score: 134
Period size: 27 Copynumber: 6.6 Consensus size: 27
49312324 TCTCTTATAG
*
49312334 GGTAAAATGATTGTTTTG-CC-TTTACGA
1 GGTAAAATGATTGTTTTGCCCTTTTA--T
* * *
49312361 GGTAAAATGATTGTTATGCCCTTATGT
1 GGTAAAATGATTGTTTTGCCCTTTTAT
* * * *
49312388 GGTAAAATGACTATTTTGCCCTTGTAA
1 GGTAAAATGATTGTTTTGCCCTTTTAT
* * * * *
49312415 GGCAAAATTACTATTTTGCCCTTATGA-
1 GGTAAAATGATTGTTTTGCCCTT-TTAT
* *
49312442 GGTAAAATGACTAT-TTTTGCCCTTATGT
1 GGTAAAATGA-T-TGTTTTGCCCTTTTAT
*
49312470 GGTAAAATGATTGTTTTGTCCTTTTAT
1 GGTAAAATGATTGTTTTGCCCTTTTAT
*
49312497 GGTAAGATGATTGTTTT
1 GGTAAAATGATTGTTTT
49312514 ACCCCTATGT
Statistics
Matches: 122, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
26 1 0.01
27 95 0.78
28 23 0.19
29 3 0.02
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTAAAATGATTGTTTTGCCCTTTTAT
Found at i:49314104 original size:43 final size:43
Alignment explanation
Indices: 49314057--49314221 Score: 124
Period size: 43 Copynumber: 3.8 Consensus size: 43
49314047 ACATGTAATC
* *
49314057 AAATATTGATGCCACTATCCCAGACAAGGTCTTACACAAAATT
1 AAATATCGATGCCACTGTCCCAGACAAGGTCTTACACAAAATT
*
49314100 AAATA-CGATGCCAATGTCCCA-A-AACTGGTCTTACACATAAATCT
1 AAATATCGATGCCACTGTCCCAGACAA--GGTCTTACACA-AAAT-T
* * * * ** * *
49314144 CAA-ATCAATGCTAAC-GTCCTAGACGTGGTCTTACACGAAATC
1 AAATATCGATGC-CACTGTCCCAGACAAGGTCTTACACAAAATT
* * *
49314186 ATATATAGATGCCACTGTCCCAGACAGGGTCTTACA
1 AAATATCGATGCCACTGTCCCAGACAAGGTCTTACA
49314222 TGATATCTCA
Statistics
Matches: 92, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 27 0.29
43 37 0.40
44 23 0.25
45 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
AAATATCGATGCCACTGTCCCAGACAAGGTCTTACACAAAATT
Found at i:49316363 original size:14 final size:14
Alignment explanation
Indices: 49316344--49316374 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
49316334 TAATTCCTTC
49316344 ATAAACTGACTATT
1 ATAAACTGACTATT
49316358 ATAAACTGACTATT
1 ATAAACTGACTATT
49316372 ATA
1 ATA
49316375 TCTAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (14 bp):
ATAAACTGACTATT
Found at i:49333274 original size:40 final size:39
Alignment explanation
Indices: 49333172--49333311 Score: 212
Period size: 39 Copynumber: 3.6 Consensus size: 39
49333162 AACCCAAGTA
* *
49333172 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
49333211 CCTTCGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49333250 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
49333290 CCTTCGGACTTAGCCCGGATAT
1 CCTTCGGACTTAGCCCGGATAT
49333312 CATTCGAATA
Statistics
Matches: 94, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
38 6 0.06
39 49 0.52
40 39 0.41
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Done.