Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 147 of 295
Found at i:50114206 original size:8 final size:8
Alignment explanation
Indices: 50114193--50114253 Score: 50
Period size: 8 Copynumber: 6.9 Consensus size: 8
50114183 ATTATGACCG
50114193 TTAAATTA
1 TTAAATTA
50114201 TTAAATTA
1 TTAAATTA
*
50114209 TTAAGTTA
1 TTAAATTA
*
50114217 TAAAAAATTA
1 T--TAAATTA
50114227 TTAAATGATTA
1 TT-AA--ATTA
50114238 TTAAATTA
1 TTAAATTA
50114246 TTTAAATT
1 -TTAAATT
50114254 TTACACTGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
8 20 0.47
9 9 0.21
10 8 0.19
11 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (8 bp):
TTAAATTA
Found at i:50122176 original size:47 final size:48
Alignment explanation
Indices: 50122107--50122426 Score: 194
Period size: 47 Copynumber: 6.7 Consensus size: 48
50122097 TAGGATGCCA
50122107 ATGCCATAG-CCCAGACATGGTCTTACACTGGCTCATACATCAAGTC-G
1 ATGCCAT-GTCCCAGACATGGTCTTACACTGGCTCATACATCAAGTCTG
* * * ** * *
50122154 ATGCCATGTCCCAGACATGGTCTTGCACTGACT-ATCGCAATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-AC-ATCAAGTCTG
* * * ** * *
50122203 ATGCCATGTCCCATACATGGTCTTACACAGACTTTTACATATCCA-TGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAC--ATCAAGT-CTG
* * * * *
50122253 ATGCGATGTCCCAGACATGGTCTTACATTGACACAT--TTCATAG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCA-AGTCTG
* * * *
50122299 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCAAGTCTG
* ** * * *
50122346 ATGCTATGTCTTAGACATGGTCTTACACTAGCTC-TGGTC-CCAATGTC-G
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--ACATCAA-GTCTG
* *
50122394 ATACCATGTCCCAGACATGGTCTTATACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
50122427 GTCATAATGT
Statistics
Matches: 208, Mismatches: 49, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
45 13 0.06
46 26 0.12
47 51 0.25
48 49 0.24
49 34 0.16
50 35 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCAAGTCTG
Found at i:50125888 original size:40 final size:40
Alignment explanation
Indices: 50125805--50126024 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
50125795 ACCCAAGTAT
** * *
50125805 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
50125843 CTTCGGGTCTTAGCCCGGATATGGTCACTAGAATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
50125883 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
50125923 CTTCGGGTCTTAGACTGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
50125963 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50126003 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
50126025 CATTCGAATA
Statistics
Matches: 148, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 120 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50132733 original size:46 final size:46
Alignment explanation
Indices: 50132606--50132768 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 46
50132596 ATCGAGGCCT
* *
50132606 ATGTCCCAGACATGGTTTTACACTAGCTCTCACATATCCGT-GCTGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-C-TAGCTGATG-C
*
50132656 ATGTCCCAGGCATGGTCTTACACT-GAC--ACATCTCTTAGCTGATGC
1 ATGTCCCAGACATGGTCTTACACTAG-CTTACATCTC-TAGCTGATGC
* *
50132701 ATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGAGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTTACATCTCTA-GCTGATGC
*
50132747 ATGTCCCAGACATGGTGTTACA
1 ATGTCCCAGACATGGTCTTACA
50132769 TTGGCTCACA
Statistics
Matches: 98, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
44 11 0.11
45 17 0.17
46 39 0.40
47 7 0.07
49 1 0.01
50 23 0.23
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGGTCTTACACTAGCTTACATCTCTAGCTGATGC
Found at i:50140729 original size:39 final size:39
Alignment explanation
Indices: 50140686--50140763 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
50140676 TCTCGGGTGA
50140686 TAATCAATCACAAGTTCGTAGTCTTGTAGCAGTTCTAAC
1 TAATCAATCACAAGTTCGTAGTCTTGTAGCAGTTCTAAC
50140725 TAATCAATCACAAGTTCGTAGTCTTGTAGCAGTTCTAAC
1 TAATCAATCACAAGTTCGTAGTCTTGTAGCAGTTCTAAC
50140764 CATCTTCTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (39 bp):
TAATCAATCACAAGTTCGTAGTCTTGTAGCAGTTCTAAC
Found at i:50148904 original size:49 final size:49
Alignment explanation
Indices: 50148830--50149011 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
50148820 CTGGTACGCA
* * **
50148830 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * * * * *
50148879 TTGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
* **
50148930 TAGTAGCCTGCACTTAGTACTACACATGCCACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
50148979 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
50149012 TCACAATAGT
Statistics
Matches: 109, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 70 0.64
50 2 0.02
51 37 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:50148937 original size:100 final size:100
Alignment explanation
Indices: 50148822--50149009 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
50148812 GAAGCTATCT
** * *
50148822 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTAGTACACGTTGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCCACCAATAATCCAGTACACGTAGTAGCC
*
50148887 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* *
50148922 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCCACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCCACCAATAATCCAGTACACGTAGTAGCC
50148987 TACACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
50149010 CCTCACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCCACCAATAATCCAGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:50152156 original size:28 final size:28
Alignment explanation
Indices: 50152124--50152179 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
50152114 TTCTTATTAT
50152124 GCCATATTTCTTTTTCACAAATAAAACC
1 GCCATATTTCTTTTTCACAAATAAAACC
*
50152152 GCCATCTTTCTTTTTCACAAATAAAACC
1 GCCATATTTCTTTTTCACAAATAAAACC
50152180 AGAGCACCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.36
Consensus pattern (28 bp):
GCCATATTTCTTTTTCACAAATAAAACC
Found at i:50174904 original size:49 final size:47
Alignment explanation
Indices: 50174789--50175009 Score: 202
Period size: 49 Copynumber: 4.6 Consensus size: 47
50174779 TAGGATGCTA
*
50174789 ATGCCATG-CCCAAGACATGGTCTTACACTGGCT-TATACATCAAGTCG
1 ATGCCATGTCCC-AGACATGGTCTTACACTGGCTATATACATC-AGCCG
* *
50174836 ATGCAATGTCCCAGACATGGTCTTACACTGGCTAT-TGCAATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATATAC-ATC-A-GCCG
* * *
50174885 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TACATATCCGTGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATATAC--AT-C-AGCCG
* * * * * *
50174935 ATGCCATGTCCCAAACAAGGTCTTACACTGAC-ACATCTCAT-AGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATAT-ACATCAGCCG
50174981 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
50175010 AGCTCTCGTC
Statistics
Matches: 147, Mismatches: 19, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
46 31 0.21
47 30 0.20
48 8 0.05
49 40 0.27
50 35 0.24
51 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATATACATCAGCCG
Found at i:50175003 original size:46 final size:47
Alignment explanation
Indices: 50174789--50175009 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 47
50174779 TAGGATGCTA
**
50174789 ATGCCATG-CCCAAGACATGGTCTTACACTGGCTTATACAT-CA-AGTC-G
1 ATGCCATGTCCC-AGACATGGTCTTACACTGGCACAT-C-TCCATAG-CGG
* * * *
50174836 ATGCAATGTCCCAGACATGGTCTTACACTGGC-TAT-TGCAATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATCT-CCAT--A-GCGG
* *
50174885 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACATATCCGT-GCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGG--C--ACATCTCCATAGCGG
* * *
50174935 ATGCCATGTCCCAAACAAGGTCTTACACTGACACATCT-CATAGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCCATAGCGG
50174981 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
50175010 AGCTCTCGTC
Statistics
Matches: 145, Mismatches: 14, Indels: 31
0.76 0.07 0.16
Matches are distributed among these distances:
43 1 0.01
45 3 0.02
46 39 0.27
47 27 0.19
48 6 0.04
49 32 0.22
50 31 0.21
51 1 0.01
54 4 0.03
55 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCCATAGCGG
Found at i:50180129 original size:25 final size:25
Alignment explanation
Indices: 50180095--50180145 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
50180085 GTCAAAAGAG
50180095 TTTAATTAGGATTACTAGTCCAGGC
1 TTTAATTAGGATTACTAGTCCAGGC
50180120 TTTAATTAGGATTACTAGTCCAGGC
1 TTTAATTAGGATTACTAGTCCAGGC
50180145 T
1 T
50180146 AATCCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (25 bp):
TTTAATTAGGATTACTAGTCCAGGC
Found at i:50180729 original size:19 final size:20
Alignment explanation
Indices: 50180697--50180736 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
50180687 AGCACATGTA
50180697 TTCATAAAAATTCA-AATTT
1 TTCATAAAAATTCACAATTT
* *
50180716 TTCATCAAATTTCACAATTT
1 TTCATAAAAATTCACAATTT
50180736 T
1 T
50180737 ACATTTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (20 bp):
TTCATAAAAATTCACAATTT
Found at i:50181863 original size:18 final size:19
Alignment explanation
Indices: 50181837--50181884 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
50181827 GAGAAGGAAA
*
50181837 AAAGTAACTAGT-AAGTTC
1 AAAGAAACTAGTGAAGTTC
*
50181855 AAAGAAACTTAGTGATGTTC
1 AAAGAAAC-TAGTGAAGTTC
50181875 AGAAGAAACT
1 A-AAGAAACT
50181885 TACATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 4 0.16
20 7 0.28
21 7 0.28
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (19 bp):
AAAGAAACTAGTGAAGTTC
Found at i:50183343 original size:16 final size:15
Alignment explanation
Indices: 50183315--50183344 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
50183305 GCATTAAATA
50183315 TGTTTGTTTGAATGT
1 TGTTTGTTTGAATGT
50183330 TGTTTGTATTGAATG
1 TGTTTGT-TTGAATG
50183345 GACTTATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.17, C:0.00, G:0.27, T:0.57
Consensus pattern (15 bp):
TGTTTGTTTGAATGT
Found at i:50188356 original size:17 final size:17
Alignment explanation
Indices: 50188334--50188372 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
50188324 GGCCGTGTTG
50188334 ATTTCATAC-TTTGGCCC
1 ATTTCA-ACGTTTGGCCC
*
50188351 ATTTCACCGTTTGGCCC
1 ATTTCAACGTTTGGCCC
50188368 ATTTC
1 ATTTC
50188373 CGTTCCCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.41
Consensus pattern (17 bp):
ATTTCAACGTTTGGCCC
Found at i:50203963 original size:79 final size:81
Alignment explanation
Indices: 50203854--50204036 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
50203844 TACTCGTTCA
* *
50203854 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
50203917 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
50203934 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
50203997 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
50204013 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
50204037 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:50204036 original size:40 final size:40
Alignment explanation
Indices: 50203833--50204036 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
50203823 CGGAATTTAA
** *
50203833 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50203873 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50203913 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50203952 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50203992 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50204032 CCGGA
1 CCGGA
50204037 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50212069 original size:40 final size:40
Alignment explanation
Indices: 50212025--50212248 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
50212015 GCTACTCGTT
* **
50212025 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50212065 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
50212105 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
50212145 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
50212184 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
50212225 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
50212249 ACATCATTCG
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50212203 original size:119 final size:120
Alignment explanation
Indices: 50212027--50212249 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
50212017 TACTCGTTCA
* ** *
50212027 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTTACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
50212092 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
50212147 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
50212209 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
50212250 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:50215601 original size:24 final size:24
Alignment explanation
Indices: 50215569--50215615 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
50215559 CTGTTAGGAG
**
50215569 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
50215593 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
50215616 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:50217073 original size:27 final size:27
Alignment explanation
Indices: 50217035--50217137 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 27
50217025 GAAGCGTCCC
*
50217035 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
*
50217062 GGTGGCTCTGCCACATATT-TCTGTTCT
1 GGTGGCTCTGCCACA-ATTATCTGATCT
**
50217089 GGTGGCTCTGCCATGATTATCTGTATCT
1 GGTGGCTCTGCCACAATTATCTG-ATCT
* *
50217117 GGTGACTCTGTCAC-ATTATCT
1 GGTGGCTCTGCCACAATTATCT
50217138 ATTCTGGCAG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 45 0.69
28 17 0.26
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:50217143 original size:54 final size:54
Alignment explanation
Indices: 50217035--50217144 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
50217025 GAAGCGTCCC
* * *
50217035 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCT
* ** *
50217089 GGTGGCTCTGCCATGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATTCT
1 GGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATTCT
50217143 GG
1 GG
50217145 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCT
Found at i:50220838 original size:47 final size:47
Alignment explanation
Indices: 50220763--50221211 Score: 763
Period size: 47 Copynumber: 9.5 Consensus size: 47
50220753 TTCGGGACTC
* * * * * * *
50220763 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
50220810 GTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
50220857 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
50220904 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
50220951 ATAACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
50220998 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
50221045 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
50221092 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
50221139 ATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
50221188 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
50221212 TATTCAAATA
Statistics
Matches: 382, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 336 0.88
49 46 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:50233468 original size:40 final size:40
Alignment explanation
Indices: 50233391--50233568 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
50233381 AAACCAAGTA
* * *
50233391 CCTTCGGGATTTAG-CCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50233430 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50233470 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50233510 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50233550 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50233569 TTATCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 112 0.88
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50237254 original size:34 final size:33
Alignment explanation
Indices: 50237200--50237286 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 33
50237190 TCTCAGTTAC
* * *
50237200 GGCCTTAGCCTATTTCAGTAACAGTAGCAGTCT
1 GGCCTAAGCCCATTTCAGTAACAGTAGCAGTAT
* * * *
50237233 GGGCTTGAGCCCATTTCAGTAATAGTATCAGTAT
1 -GGCCTAAGCCCATTTCAGTAACAGTAGCAGTAT
*
50237267 GGCCTAAGCCCATTACAGTA
1 GGCCTAAGCCCATTTCAGTA
50237287 TAAATATAGT
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 17 0.39
34 27 0.61
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (33 bp):
GGCCTAAGCCCATTTCAGTAACAGTAGCAGTAT
Found at i:50243781 original size:24 final size:23
Alignment explanation
Indices: 50243748--50243805 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50243738 AGTTGAAAAG
50243748 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
50243772 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
50243794 TATATATAATAA
1 TATA-ATAATAA
50243806 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:50244158 original size:49 final size:49
Alignment explanation
Indices: 50244076--50244232 Score: 275
Period size: 49 Copynumber: 3.2 Consensus size: 49
50244066 CTTACTTTGA
*
50244076 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50244123 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50244172 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAAT-GCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50244220 GAATGTGATAAGT
1 GAATGTGA-AAGT
50244233 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
47 13 0.12
48 19 0.18
49 74 0.70
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:50244406 original size:37 final size:37
Alignment explanation
Indices: 50244350--50244428 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50244340 CCGAGCTCTA
* * *
50244350 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50244387 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50244424 AAGAC
1 AAGAC
50244429 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50246339 original size:43 final size:42
Alignment explanation
Indices: 50246291--50246392 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 42
50246281 TTGGTTTTCA
50246291 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
50246333 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
1 -GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
50246376 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
50246393 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 17 0.29
43 42 0.71
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (42 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:50246411 original size:29 final size:29
Alignment explanation
Indices: 50246376--50246447 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
50246366 TTGTGAGATT
* *
50246376 GCACTAAGTGTGCGGGCTTGAAA-TGCATG
1 GCACTAAGTGTGCGAG-TTGAAAGTACATG
*
50246405 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTGAAAGTACATG
50246434 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50246448 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAGTACATG
Found at i:50246882 original size:40 final size:40
Alignment explanation
Indices: 50246759--50247034 Score: 263
Period size: 40 Copynumber: 6.9 Consensus size: 40
50246749 TCGAACGATG
** *
50246759 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
50246799 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
50246839 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
50246879 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
50246919 TCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
50246959 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
50246999 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
50247035 CGCGTATTCA
Statistics
Matches: 198, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 178 0.90
41 19 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:50246979 original size:120 final size:121
Alignment explanation
Indices: 50246759--50247035 Score: 301
Period size: 120 Copynumber: 2.3 Consensus size: 121
50246749 TCGAACGATG
**
50246759 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
* * ** * *
50246822 TGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCAAAGAGCATTCATGCTAGTGATATA
** * * *
50246879 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCTGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAG-GCAT
* * * * * *
50246943 TCGTGCTAGTGA-TATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCAAAGAGCATTCATGCTAGTGATATA
* * * *
50246999 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
50247036 GCGTATTCAG
Statistics
Matches: 130, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
120 104 0.80
121 20 0.15
122 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTGACTAAATCCGGGCTAAACCCCAAAGAGCATTCATGCTAGTGATATA
Found at i:50250184 original size:24 final size:23
Alignment explanation
Indices: 50250151--50250208 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50250141 AGTTGAAAAG
50250151 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
50250175 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
50250197 TATATATAATAA
1 TATA-ATAATAA
50250209 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:50250561 original size:49 final size:49
Alignment explanation
Indices: 50250479--50250636 Score: 284
Period size: 49 Copynumber: 3.2 Consensus size: 49
50250469 CTTACTTTGA
*
50250479 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50250526 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50250575 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
50250624 GAATGTGATAAGT
1 GAATGTGA-AAGT
50250637 CCCGAAGGGC
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
47 13 0.12
49 90 0.84
50 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:50250810 original size:37 final size:37
Alignment explanation
Indices: 50250754--50250832 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50250744 CCGAGCTCTA
* * *
50250754 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50250791 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50250828 AAGAC
1 AAGAC
50250833 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50255465 original size:27 final size:27
Alignment explanation
Indices: 50255427--50255492 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
50255417 AACACATTTT
50255427 GGGCCTAAGCCCTTACAGTCTCAATTA
1 GGGCCTAAGCCCTTACAGTCTCAATTA
50255454 GGGCCTAAGCCCTTACAGTCTCAATTA
1 GGGCCTAAGCCCTTACAGTCTCAATTA
*
50255481 GGGCCTTAGCCC
1 GGGCCTAAGCCC
50255493 ATTTCAGTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (27 bp):
GGGCCTAAGCCCTTACAGTCTCAATTA
Found at i:50258330 original size:27 final size:27
Alignment explanation
Indices: 50258300--50258450 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
50258290 ATATTGAGTC
* * *
50258300 CGCACACTCAGTGCTATATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50258327 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50258355 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
50258382 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAGTCAAAT
*
50258409 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50258436 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50258451 GTACAATTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.04
27 75 0.71
28 23 0.22
29 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50261749 original size:139 final size:135
Alignment explanation
Indices: 50261244--50261797 Score: 680
Period size: 129 Copynumber: 4.1 Consensus size: 135
50261234 AGAGAACATA
* *
50261244 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATATTTTATCGAATTT
1 AATATAATTAATAAATAAATTTGATTCATACAAAATATTAA-T-T-TATATATTTTATC-AATTT
* * *
50261309 ATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGCAATTAATATTC
62 ATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTC
50261374 TTTTGGAAAG
127 -TTTGGAAAG
* * * * *
50261384 AATATAATTGATATATGAATTTG--------AAAATATTAGTTTATACATTTTACTCAATTTATT
1 AATATAATTAATAAATAAATTTGATTCATACAAAATATTAATTTATATATTTTA-TCAATTTATT
* * *
50261441 AATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGGAATTAATATTCTTT
65 AATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTC-TT
* *
50261506 TGAAAAT
129 TGGAAAG
* * *
50261513 AATATAATTAATAAATTAATTTGATTCATACAAAATATTAATTT-TATATATTACCAAATTTATT
1 AATATAATTAATAAATAAATTTGATTCATACAAAATATTAATTTATATATTTTATC-AATTTATT
* * *
50261577 AATGTAAATAATTATATTAATTAATTTTGGTCAAAATATAAAAGA-ACTAGAAATTAATATTCTT
65 AATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACA-TAGAAATTAATATTCTT
50261641 TAGGAAA-
129 T-GGAAAG
*
50261648 AATATAATTAATATATAAAATTTTGATTCATACAAAATATTAATTGTATATATTTTATCAAGTTT
1 AATATAATTAATAAAT-AAA-TTTGATTCATACAAAATATTAATT-TATATATTTTATCAA-TTT
* *
50261713 ATTAATATAAACAGTTATATTAATTACTTTCGGTCAAAATATAAAAGACATAGAAATTAATATTC
62 ATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTC
50261778 TTCTGGAAAG
127 TT-TGGAAAG
50261788 AATATAATTA
1 AATATAATTA
50261798 CTTTTTCTAA
Statistics
Matches: 365, Mismatches: 29, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
129 107 0.29
130 3 0.01
131 1 0.00
132 9 0.02
135 20 0.05
136 75 0.21
137 36 0.10
138 3 0.01
139 77 0.21
140 34 0.09
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (135 bp):
AATATAATTAATAAATAAATTTGATTCATACAAAATATTAATTTATATATTTTATCAATTTATTA
ATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCTTTG
GAAAG
Found at i:50261778 original size:275 final size:268
Alignment explanation
Indices: 50261244--50261797 Score: 733
Period size: 275 Copynumber: 2.0 Consensus size: 268
50261234 AGAGAACATA
* * *
50261244 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATATTTTATCGAATTT
1 AATATAATTAATAAATGAATTTGATTCATACAAAATATTAATTGTATATATA-TTTACCAAATTT
* *
50261309 ATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGCAATTAATATTC
65 ATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATAGAAATTAATATTC
* * * *
50261374 TTTTGGAAAGAATATAATTGATATATGAATTTGAAAATATTAGTTTATACATTTTACTCAATTTA
130 TTTAGGAAAGAATATAATTAATATATAAATTTGAAAATATTAATTTATACATTTTACTCAATTTA
* *
50261439 TTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGGAATTAATATTCT
195 TTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATAGAAATTAATATTCT
* *
50261504 TTTGAAAAT
260 TCTGAAAAG
*
50261513 AATATAATTAATAAATTAATTTGATTCATACAAAATATTAATT-T-TATATA-TTACCAAATTTA
1 AATATAATTAATAAATGAATTTGATTCATACAAAATATTAATTGTATATATATTTACCAAATTTA
* * **
50261575 TTAATGTAAATAATTATATTAATTAATTTTGGTCAAAATATAAAAGA-ACTAGAAATTAATATTC
66 TTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACA-TAGAAATTAATATTC
*
50261639 TTTAGGAAA-AATATAATTAATATATAAAATTTTGATTCATACAAAATATTAATTGTATATATTT
130 TTTAGGAAAGAATATAATTAATATAT-AAA-TTTG--------AAAATATTAATT-TATACATTT
* * *
50261703 TA-TCAAGTTTATTAATATAAACAGTTATATTAATTACTTTCGGTCAAAATATAAAAGACATAGA
184 TACTCAA-TTTATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATAGA
*
50261767 AATTAATATTCTTCTGGAAAG
248 AATTAATATTCTTCTGAAAAG
50261788 AATATAATTA
1 AATATAATTA
50261798 CTTTTTCTAA
Statistics
Matches: 249, Mismatches: 23, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
264 16 0.06
265 76 0.31
266 4 0.02
267 6 0.02
268 1 0.00
269 41 0.16
274 15 0.06
275 90 0.36
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (268 bp):
AATATAATTAATAAATGAATTTGATTCATACAAAATATTAATTGTATATATATTTACCAAATTTA
TTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATAGAAATTAATATTCT
TTAGGAAAGAATATAATTAATATATAAATTTGAAAATATTAATTTATACATTTTACTCAATTTAT
TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATAGAAATTAATATTCTT
CTGAAAAG
Found at i:50264866 original size:25 final size:25
Alignment explanation
Indices: 50264773--50264866 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 25
50264763 CCTGTACATG
* * *
50264773 TATGCTCATACGAGCTATGAATCGG
1 TATGCTCACACGAGCTATAAATCGA
* * * *
50264798 TATGCTCACTCGAGTTGTATATCGA
1 TATGCTCACACGAGCTATAAATCGA
* *
50264823 TATGCTCTCACAAGCTATAAATCGA
1 TATGCTCACACGAGCTATAAATCGA
*
50264848 TATACTCACACGAGCTATA
1 TATGCTCACACGAGCTATA
50264867 GGTCAGAATG
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (25 bp):
TATGCTCACACGAGCTATAAATCGA
Found at i:50269796 original size:39 final size:39
Alignment explanation
Indices: 50269738--50269975 Score: 386
Period size: 39 Copynumber: 6.1 Consensus size: 39
50269728 ATGCAAGACA
*
50269738 CTAGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
50269777 CTTGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
50269816 CTAGAACTGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
50269855 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
** *
50269894 CTAGAAATGTATTTGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
50269933 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50269972 CTAG
1 CTAG
50269976 TAATATAATT
Statistics
Matches: 181, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:50275108 original size:39 final size:39
Alignment explanation
Indices: 50275049--50275242 Score: 325
Period size: 39 Copynumber: 5.0 Consensus size: 39
50275039 CAAGACACTA
* * *
50275049 GAAATGTATCTGGGCCAAAGTCCCGTAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
50275088 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
50275127 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
50275166 CAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
50275205 GAAATGTATCTGGGCTAAAGTCTCGCAGGCTTTGTGCT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
50275243 AGTAATATAA
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 147 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:50278944 original size:26 final size:26
Alignment explanation
Indices: 50278915--50278974 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
50278905 TCCATTTGAA
* * *
50278915 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
50278941 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
50278969 CCATTC
1 TCATTC
50278975 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:50278960 original size:28 final size:28
Alignment explanation
Indices: 50278929--50279000 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
50278919 TCGATATTTT
*
50278929 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
50278957 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
50278985 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
50279001 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:50279966 original size:17 final size:17
Alignment explanation
Indices: 50279944--50279976 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
50279934 ATATAACACC
50279944 TTCATTCTT-TTATTATA
1 TTCATT-TTATTATTATA
50279961 TTCATTTTATTATTAT
1 TTCATTTTATTATTAT
50279977 TTTTAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCATTTTATTATTATA
Found at i:50285223 original size:42 final size:41
Alignment explanation
Indices: 50285177--50285278 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 41
50285167 CTTAGACAGG
* *
50285177 GTCTTACACGAAATCAAATACGATGTCGATGTACCAGACATA
1 GTCTTACACGAAATCAAAT-CGATGCCAATGTACCAGACATA
* * *
50285219 GTCTTACACGTAAATCTCAAATCGATGCCAATGTCCCAGACGTG
1 GTCTTACACG-AAA--TCAAATCGATGCCAATGTACCAGACATA
*
50285263 GTCTTACACAAAATCA
1 GTCTTACACGAAATCA
50285279 CATATCGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 3 0.06
42 10 0.20
43 6 0.12
44 26 0.51
45 6 0.12
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
GTCTTACACGAAATCAAATCGATGCCAATGTACCAGACATA
Found at i:50288331 original size:10 final size:10
Alignment explanation
Indices: 50288316--50288342 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
50288306 TTATTTTACT
50288316 TACCAAAACA
1 TACCAAAACA
50288326 TACCAAAACA
1 TACCAAAACA
50288336 TACCAAA
1 TACCAAA
50288343 TATGTCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.30, G:0.00, T:0.11
Consensus pattern (10 bp):
TACCAAAACA
Found at i:50293756 original size:19 final size:20
Alignment explanation
Indices: 50293727--50293766 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
50293717 ACTAAAATGT
50293727 AAAATTGTGAAATTTGATGA
1 AAAATTGTGAAATTTGATGA
* *
50293747 AAAATT-TGAATTTTTATGA
1 AAAATTGTGAAATTTGATGA
50293766 A
1 A
50293767 TACATGTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
AAAATTGTGAAATTTGATGA
Found at i:50294347 original size:25 final size:25
Alignment explanation
Indices: 50294318--50294368 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
50294308 AAAAAGGATT
50294318 AGCCTGGACTAGTAATCCTAATTAA
1 AGCCTGGACTAGTAATCCTAATTAA
50294343 AGCCTGGACTAGTAATCCTAATTAA
1 AGCCTGGACTAGTAATCCTAATTAA
50294368 A
1 A
50294369 CTCTTTTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (25 bp):
AGCCTGGACTAGTAATCCTAATTAA
Found at i:50295603 original size:21 final size:22
Alignment explanation
Indices: 50295579--50295620 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50295569 TAGCATAAGT
50295579 GTGTCCC-AGGACCATACAGGC
1 GTGTCCCTAGGACCATACAGGC
*
50295600 GTGTCCCTTGGACCATACAGG
1 GTGTCCCTAGGACCATACAGG
50295621 TGTGCGAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (22 bp):
GTGTCCCTAGGACCATACAGGC
Found at i:50299508 original size:46 final size:48
Alignment explanation
Indices: 50299451--50299676 Score: 186
Period size: 46 Copynumber: 4.7 Consensus size: 48
50299441 ATTGAGACGA
*
50299451 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCCG-CTA-TGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGACTACTGAGAT
* * *
50299497 GTGTCAGTGTAAGACCTTGTCTGGGACATGGCATCCGCACGGATA-TGTA-A-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCG-AC---TACTG-AGAT
* * *
50299547 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTGCA-AT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGACT--ACTG-AGAT
* *
50299597 -AGCCAGTGTAAGACCATGCCTGGGACATTGCAT-CGACT--TGATGTAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGACTACTGA-G-AT
*
50299643 AAGCCAGTGTAAGACCATGTCTTGGG-CATGGCAT
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCAT
50299677 TAGCATCCTA
Statistics
Matches: 149, Mismatches: 16, Indels: 29
0.77 0.08 0.15
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
46 36 0.24
47 26 0.17
48 9 0.06
49 36 0.24
50 33 0.22
51 5 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGACTACTGAGAT
Found at i:50299614 original size:49 final size:47
Alignment explanation
Indices: 50299456--50299676 Score: 211
Period size: 49 Copynumber: 4.6 Consensus size: 47
50299446 GACGAGAGCT
** *
50299456 AGTGTAAGACCATGTCTGGGACATGGCATCCG-CT-ATGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCGCCTGATGA-ATAAGCC
* * *
50299502 AGTGTAAGACCTTGTCTGGGACATGGCATCCGCACGGATATGTAA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCGC-CTG--ATG-AATAAGCC
*
50299552 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTGCAAT-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCGCCT-GA-TG-AATAAGCC
* * * *
50299601 AGTGTAAGACCATGCCTGGGACATTGCAT-CGACTTGATGTATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCG-CCTGATGAATAAGCC
50299648 AGTGTAAGACCATGTCTTGGG-CATGGCAT
1 AGTGTAAGACCATGTC-TGGGACATGGCAT
50299677 TAGCATCCTA
Statistics
Matches: 148, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
46 33 0.22
47 28 0.19
48 9 0.06
49 38 0.26
50 35 0.24
51 4 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCCGCCTGATGAATAAGCC
Found at i:50299641 original size:96 final size:96
Alignment explanation
Indices: 50299450--50299676 Score: 254
Period size: 96 Copynumber: 2.4 Consensus size: 96
50299440 CATTGAGACG
* * * *
50299450 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCCGCTATGAGATGTGTCAGTGTAAGACCTT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGCTATGAGATGAGCCAGTGTAAGACCAT
*
50299515 GTCTGGGACATGGCATCCGCACGGATATGTA-
66 GCCTGGGACATGGCATCCGCACGGA-ATGTAT
*
50299546 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTGCA-AT-AGCCAGTGTAAG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCG-CT--A-TG-AGATGAGCCAGTGTAAG
* *
50299609 ACCATGCCTGGGACATTGCAT-CG-ACTTG-ATGTAT
61 ACCATGCCTGGGACATGGCATCCGCAC-GGAATGTAT
50299643 A-AGCCAGTGTAAGACCATGTCTTGGG-CATGGCAT
1 AGAGCCAGTGTAAGACCATGTC-TGGGACATGGCAT
50299677 TAGCATCCTA
Statistics
Matches: 115, Mismatches: 8, Indels: 16
0.83 0.06 0.12
Matches are distributed among these distances:
96 69 0.60
97 9 0.08
98 3 0.03
99 29 0.25
100 4 0.03
101 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (96 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCGCTATGAGATGAGCCAGTGTAAGACCAT
GCCTGGGACATGGCATCCGCACGGAATGTAT
Found at i:50305011 original size:43 final size:43
Alignment explanation
Indices: 50304963--50305045 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
50304953 TTACCTGAGT
50304963 ATGTTTATTGGATTATTATGTAATAGTCACAAATATTACTGGG
1 ATGTTTATTGGATTATTATGTAATAGTCACAAATATTACTGGG
*
50305006 ATGTTTCTTGGATTATTATGTAATAGTCACAAATATTACT
1 ATGTTTATTGGATTATTATGTAATAGTCACAAATATTACT
50305046 CATAATGTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (43 bp):
ATGTTTATTGGATTATTATGTAATAGTCACAAATATTACTGGG
Found at i:50308859 original size:19 final size:19
Alignment explanation
Indices: 50308835--50308871 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
50308825 AAGGGTATTG
50308835 AGGGCTAGAAATGAGTAGA
1 AGGGCTAGAAATGAGTAGA
50308854 AGGGCTAGAAATGAGTAG
1 AGGGCTAGAAATGAGTAG
50308872 GACCTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.38, T:0.16
Consensus pattern (19 bp):
AGGGCTAGAAATGAGTAGA
Found at i:50316131 original size:46 final size:46
Alignment explanation
Indices: 50316072--50316198 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 46
50316062 GACGGTTGAG
*
50316072 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCAAA
* * * *
50316118 TATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCAAA
** *
50316164 CGCCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50316199 GGGGGGGTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 12 0.17
46 59 0.83
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCAAA
Found at i:50323348 original size:46 final size:46
Alignment explanation
Indices: 50323298--50323423 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
50323288 TGGTTGAGCA
*
50323298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
50323344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
50323390 CCCGAGCTCGTTGAGTTGAGTCTGAGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50323424 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50326049 original size:45 final size:43
Alignment explanation
Indices: 50325934--50326051 Score: 116
Period size: 45 Copynumber: 2.7 Consensus size: 43
50325924 GATGCCACTG
* * **
50325934 TCCTAGACAG-GGTCTTACACGAATCA-A-ATACGATGTCGATG
1 TCCTAGAC-GTGGTCTTACACGAATCACATATACGATGCCAACA
* * *
50325975 TCCTAGACATGGTCTTACGCGTAACCACATATATCGATGCCAACA
1 TCCTAGACGTGGTCTTACACG-AATCACATATA-CGATGCCAACA
50326020 TCCTAGACGTGGTCTTACACGAGATCACATAT
1 TCCTAGACGTGGTCTTACACGA-ATCACATAT
50326052 CAAAAATCCT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 18 0.30
42 4 0.07
43 1 0.02
44 4 0.07
45 34 0.56
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
TCCTAGACGTGGTCTTACACGAATCACATATACGATGCCAACA
Found at i:50327196 original size:14 final size:15
Alignment explanation
Indices: 50327179--50327207 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50327169 GCACGAAAAT
50327179 TTCACACAT-ATAAA
1 TTCACACATAATAAA
50327193 TTCACACATAATAAA
1 TTCACACATAATAAA
50327208 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:50334690 original size:26 final size:26
Alignment explanation
Indices: 50334661--50334710 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
50334651 ACCAATATCA
* *
50334661 GTATCGCAGCAAAGATACTAGTAACG
1 GTATCACAGCAAAGATACCAGTAACG
*
50334687 GTATCACAGCAAAGCTACCAGTAA
1 GTATCACAGCAAAGATACCAGTAA
50334711 TCAATATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
GTATCACAGCAAAGATACCAGTAACG
Found at i:50336381 original size:23 final size:24
Alignment explanation
Indices: 50336355--50336409 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
50336345 TCTTAAAATC
*
50336355 TCTCCATAAT-CTCTCCTTGATTT
1 TCTCCACAATCCTCTCCTTGATTT
* *
50336378 TCTCCCCCATCCTCTCCTTGATTT
1 TCTCCACAATCCTCTCCTTGATTT
*
50336402 CCTCCACA
1 TCTCCACA
50336410 TAACACTCCC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.15, C:0.42, G:0.04, T:0.40
Consensus pattern (24 bp):
TCTCCACAATCCTCTCCTTGATTT
Found at i:50341574 original size:27 final size:27
Alignment explanation
Indices: 50341539--50341650 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
50341529 AGCATGGCTG
* *
50341539 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
50341565 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
50341593 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
50341620 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
50341647 CCAG
1 CCAG
50341651 GAAGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:50341630 original size:54 final size:54
Alignment explanation
Indices: 50341539--50341650 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
50341529 AGCATGGCTG
* * *
50341539 CCAGAACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
50341593 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50341647 CCAG
1 CCAG
50341651 GAAGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50347692 original size:27 final size:26
Alignment explanation
Indices: 50347657--50347768 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
50347647 AGCATGGCTG
* *
50347657 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50347683 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
50347711 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
50347738 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50347765 CCAG
1 CCAG
50347769 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50347716 original size:54 final size:54
Alignment explanation
Indices: 50347657--50347768 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
50347647 AGCATGGCTG
* *
50347657 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
50347711 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
50347765 CCAG
1 CCAG
50347769 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:50348206 original size:16 final size:15
Alignment explanation
Indices: 50348185--50348214 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
50348175 AAAATACCAA
50348185 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
50348201 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
50348215 CCGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:50355910 original size:43 final size:43
Alignment explanation
Indices: 50355855--50355978 Score: 157
Period size: 42 Copynumber: 2.9 Consensus size: 43
50355845 ATATCATACA
*
50355855 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACATGTAATCACATATCG
* * *
50355898 ATGCC-ACTGTCCCAGATAG-GGTCTTACATG-AATCAAACATTG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACATGTAATCACATATCG
50355940 ATGCCAACGTCCCAGAAGTGGTCTTACATGATAA-CACAT
1 ATGCCAACGTCCCAGAAGTGGTCTTACATG-TAATCACAT
50355979 TTTGGAAATC
Statistics
Matches: 69, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.03
42 35 0.51
43 29 0.42
44 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACATGTAATCACATATCG
Found at i:50356283 original size:28 final size:28
Alignment explanation
Indices: 50356261--50356317 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
50356251 TATAATTTTA
*
50356261 AGCTTATAGTTTCGTATATATAACATAT
1 AGCTTATAGTTTCATATATATAACATAT
*
50356289 AGCTTATAGTTTCATATATAAAACATAT
1 AGCTTATAGTTTCATATATATAACATAT
50356317 A
1 A
50356318 CTTTCATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (28 bp):
AGCTTATAGTTTCATATATATAACATAT
Found at i:50357063 original size:79 final size:79
Alignment explanation
Indices: 50356968--50357121 Score: 299
Period size: 79 Copynumber: 1.9 Consensus size: 79
50356958 TTACTTATAC
*
50356968 AATCTCATACAATTAAATCAGCATATAAAGTTCTTATACATTCAAAATTAATAACATTTATTTGC
1 AATCTCATACAATTAAATCAGCATATAAAGTTCTTATACATTCAAAATTAATAACATTCATTTGC
50357033 TTATAAACCTACCT
66 TTATAAACCTACCT
50357047 AATCTCATACAATTAAATCAGCATATAAAGTTCTTATACATTCAAAATTAATAACATTCATTTGC
1 AATCTCATACAATTAAATCAGCATATAAAGTTCTTATACATTCAAAATTAATAACATTCATTTGC
50357112 TTATAAACCT
66 TTATAAACCT
50357122 GCCTCGGACA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (79 bp):
AATCTCATACAATTAAATCAGCATATAAAGTTCTTATACATTCAAAATTAATAACATTCATTTGC
TTATAAACCTACCT
Found at i:50358083 original size:13 final size:13
Alignment explanation
Indices: 50358067--50358091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50358057 TATAAACACA
50358067 AAAAATATTTTTT
1 AAAAATATTTTTT
50358080 AAAAATATTTTT
1 AAAAATATTTTT
50358092 CTAACTCGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATATTTTTT
Found at i:50360808 original size:43 final size:43
Alignment explanation
Indices: 50360746--50360863 Score: 177
Period size: 43 Copynumber: 2.7 Consensus size: 43
50360736 ACTGTACTAT
*
50360746 TTGGGCCTTCGAGCCTAGCAAGCTATAATGCTGATGAGTTAATA
1 TTGGG-CTTCGAGCCTAGCAAGCTATAATGCCGATGAGTTAATA
* *
50360790 TTGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TTGGGCTTCGAGCCTAGCAAGCTATAATGCCGATGAGTTAATA
50360833 TTGGGCTTCGAGCCTAGCACA-C-ATAATGCCG
1 TTGGGCTTCGAGCCTAGCA-AGCTATAATGCCG
50360864 GTGAATGAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
42 9 0.13
43 55 0.80
44 5 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (43 bp):
TTGGGCTTCGAGCCTAGCAAGCTATAATGCCGATGAGTTAATA
Found at i:50364237 original size:49 final size:49
Alignment explanation
Indices: 50364129--50364316 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
50364119 TGAGGTAGCG
*** ** * * *
50364129 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCAAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACA
50364180 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* *
50364229 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* * *
50364278 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA
50364317 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
49 88 0.72
50 1 0.01
51 34 0.28
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
Found at i:50386439 original size:37 final size:37
Alignment explanation
Indices: 50386389--50386467 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50386379 TTATTACGAA
* * *
50386389 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50386426 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50386463 GTCTT
1 GTCTT
50386468 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50386664 original size:47 final size:47
Alignment explanation
Indices: 50386586--50387188 Score: 1023
Period size: 47 Copynumber: 12.7 Consensus size: 47
50386576 CCCTTCGGGA
* * * * * *
50386586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50386633 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50386680 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386727 CTTAT--CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386772 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386821 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386915 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50386964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50387011 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50387060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50387107 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50387154 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
50387189 AGAATCCTAA
Statistics
Matches: 533, Mismatches: 14, Indels: 18
0.94 0.02 0.03
Matches are distributed among these distances:
45 44 0.08
46 1 0.00
47 347 0.65
49 141 0.26
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50386859 original size:96 final size:94
Alignment explanation
Indices: 50386586--50387188 Score: 1023
Period size: 96 Copynumber: 6.4 Consensus size: 94
50386576 CCCTTCGGGA
* * * * * * * *
50386586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50386651 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
50386680 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTAT--CATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50386743 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
50386772 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50386837 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50386868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50386933 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50386964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50387029 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50387060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50387125 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
50387154 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
50387189 AGAATCCTAA
Statistics
Matches: 490, Mismatches: 12, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
92 48 0.10
93 1 0.00
94 203 0.41
96 238 0.49
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:50386924 original size:143 final size:141
Alignment explanation
Indices: 50386586--50387188 Score: 1023
Period size: 143 Copynumber: 4.2 Consensus size: 141
50386576 CCCTTCGGGA
* * * * * * * *
50386586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50386651 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
50386716 GTCCATTAGGC
131 GGCCATTAGGC
50386727 CTTAT--CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50386790 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
50386855 TCGGCCATTAGGC
129 TCGGCCATTAGGC
50386868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50386933 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
50386998 TCGGCCATTAGGC
129 TCGGCCATTAGGC
50387011 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50387076 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
50387141 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
50387154 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
50387189 AGAATCCTAA
Statistics
Matches: 444, Mismatches: 11, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
139 40 0.09
140 1 0.00
141 118 0.27
143 238 0.54
145 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:50388964 original size:41 final size:41
Alignment explanation
Indices: 50388917--50389007 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 41
50388907 AGACTTTCAT
50388917 ACATTTA-TAAAAACTTTCATAACTCATTTGAGCCATCAAGC
1 ACATTTAGT-AAAACTTTCATAACTCATTTGAGCCATCAAGC
** **
50388958 ACATTTAGTTTATTTTTCATAACTCATTTGAGCCATCAAGC
1 ACATTTAGTAAAACTTTCATAACTCATTTGAGCCATCAAGC
50388999 ACATTTAGT
1 ACATTTAGT
50389008 TTATTCATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 44 0.98
42 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (41 bp):
ACATTTAGTAAAACTTTCATAACTCATTTGAGCCATCAAGC
Found at i:50389008 original size:41 final size:41
Alignment explanation
Indices: 50388931--50389012 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
50388921 TTATAAAAAC
50388931 TTTCATAACTCATTTGAGCCATCAAGCACATTTAGTTTATT
1 TTTCATAACTCATTTGAGCCATCAAGCACATTTAGTTTATT
50388972 TTTCATAACTCATTTGAGCCATCAAGCACATTTAGTTTATT
1 TTTCATAACTCATTTGAGCCATCAAGCACATTTAGTTTATT
50389013 CATACTCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (41 bp):
TTTCATAACTCATTTGAGCCATCAAGCACATTTAGTTTATT
Found at i:50393798 original size:93 final size:93
Alignment explanation
Indices: 50393689--50393860 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
50393679 GCCCCTAAGT
* *
50393689 GAACTCGAACTCAACTCAACGAGCTCGGGCTTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50393754 CGAGTTCGGATGCTTAGTTACATTTCAC
66 CGAGTTCGGATGCTTAGTTACATTTCAC
* *
50393782 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50393847 CGAGTTCGGATGCT
66 CGAGTTCGGATGCT
50393861 CAACCATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCTTAGTTACATTTCAC
Found at i:50393856 original size:46 final size:45
Alignment explanation
Indices: 50393684--50393856 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 45
50393674 AACCCGCCCC
* * *
50393684 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCTTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCGCATCCA
* * *
50393730 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CTTCGCATCCA
* *
50393776 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCGCATCCA
50393823 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50393857 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.03
46 66 0.62
47 35 0.33
48 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTCGCATCCA
Found at i:50394311 original size:30 final size:30
Alignment explanation
Indices: 50394277--50394333 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50394267 ATTTAATCCT
50394277 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50394307 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
50394334 TTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50398378 original size:79 final size:79
Alignment explanation
Indices: 50398279--50398498 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
50398269 CTCGTTCAAG
* * ** * *
50398279 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-AT
*
50398343 TAA-AACTCGCACGAA
64 TAATAACTCGCACAAA
* * * *
50398358 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
50398423 ATAACTCGCACAAA
66 ATAACTCGCACAAA
* * ** * * *
50398437 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
50398499 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 68 0.59
80 26 0.22
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:50398458 original size:40 final size:40
Alignment explanation
Indices: 50398316--50398498 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
50398306 TAACTCATTC
* *
50398316 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
50398356 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
50398395 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
50398435 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
50398476 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50398499 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:50400074 original size:40 final size:40
Alignment explanation
Indices: 50400030--50400156 Score: 177
Period size: 40 Copynumber: 3.2 Consensus size: 40
50400020 GGCTGTCACA
* * * *
50400030 CGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATC
* *
50400070 CGGGCTAAGACCCGAAAGCATTTGTGCGAGTTGCTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
50400110 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
50400150 C-GGCTAA
1 CGGGCTAA
50400157 ATCTCGAAGA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 6 0.08
40 70 0.90
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
Found at i:50400433 original size:22 final size:22
Alignment explanation
Indices: 50400393--50400434 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50400383 GAATGTGCAT
*
50400393 ATATGATGTTATTCATTTAGCC
1 ATATGATGTTATACATTTAGCC
50400415 ATATGAATGTTATAC-TTTAG
1 ATATG-ATGTTATACATTTAG
50400435 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATGATGTTATACATTTAGCC
Found at i:50408054 original size:40 final size:40
Alignment explanation
Indices: 50407975--50408191 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
50407965 TGAATGATAA
* * *
50407975 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
50408015 CCGGGCTATGTCTCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
50408055 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
50408095 CCGGGCTCAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
50408135 TCGGGCTAAGACCAGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
50408175 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50408192 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 135 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:50438483 original size:13 final size:13
Alignment explanation
Indices: 50438465--50438490 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50438455 CATTTGTCAT
50438465 TTTAATGAATTAA
1 TTTAATGAATTAA
50438478 TTTAATGAATTAA
1 TTTAATGAATTAA
50438491 AATGGGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTAATGAATTAA
Found at i:50439560 original size:18 final size:18
Alignment explanation
Indices: 50439537--50439578 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
50439527 CCGAGTTCAT
50439537 TAAGGGTGGTTGTCGCTA
1 TAAGGGTGGTTGTCGCTA
50439555 TAAGGGTGGTTGTCGCTA
1 TAAGGGTGGTTGTCGCTA
50439573 TAAGGG
1 TAAGGG
50439579 ATTTAGCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.10, G:0.40, T:0.31
Consensus pattern (18 bp):
TAAGGGTGGTTGTCGCTA
Found at i:50443471 original size:68 final size:67
Alignment explanation
Indices: 50443399--50443548 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
50443389 CATCATGTGT
* * * *
50443399 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
50443461 ATGTAG
62 ATGTAG
** * *
50443467 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
50443532 AG
66 AG
50443534 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
50443549 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:50443504 original size:64 final size:64
Alignment explanation
Indices: 50443423--50443606 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
50443413 AGACATTATG
* * *
50443423 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGCGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
50443487 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGCGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50443552 AA
63 AA
* * * * *
50443554 ACTG--GCTAGGTCACATGTGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGCGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
50443607 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGCGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50445456 original size:53 final size:49
Alignment explanation
Indices: 50445390--50445527 Score: 159
Period size: 49 Copynumber: 2.7 Consensus size: 49
50445380 GGCAAAGGTC
* * * * *
50445390 CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGTCAAGGCTA
1 CCATGTAAGACCATGACAAGACATGGCAATGGTAAGTT-ATAA---AAGGATA
* *
50445443 CCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTTAAAAGGATA
1 CCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTATAAAAGGATA
* *
50445492 CCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CCATGTAAGACCATGACAAGACATGGCAATGGTAAG
50445528 GTACCCGTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
49 39 0.51
52 3 0.04
53 34 0.45
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (49 bp):
CCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTATAAAAGGATA
Found at i:50456290 original size:40 final size:40
Alignment explanation
Indices: 50456141--50456324 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
50456131 TCGAATGATG
* * * * * *
50456141 TCCGAGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50456181 TCCAGACTAAGAT-CCG-AGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50456220 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50456259 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50456300 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50456325 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 50 0.42
40 64 0.54
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50456346 original size:79 final size:79
Alignment explanation
Indices: 50456197--50456347 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 79
50456187 CTAAGATCCG
* **
50456197 AGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAAATCC
1 AGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCC
50456262 GGGTTAAGTCCCGA
66 GGGTTAAGTCCCGA
* * * *
50456276 AGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 AGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CTAAA
50456339 TCC-GGTTAA
63 TCCGGGTTAA
50456348 ATTCTGAAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 37 0.60
80 23 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
AGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCC
GGGTTAAGTCCCGA
Found at i:50468406 original size:15 final size:15
Alignment explanation
Indices: 50468386--50468441 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
50468376 TGATATTGTT
50468386 TCTTGGATTTCTTTA
1 TCTTGGATTTCTTTA
50468401 TCTTGGATTTCTTTA
1 TCTTGGATTTCTTTA
* *
50468416 TCGTGGACTTCTTTA
1 TCTTGGATTTCTTTA
*
50468431 TCTTGGTTTTC
1 TCTTGGATTTC
50468442 ATGTCATCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TCTTGGATTTCTTTA
Found at i:50471150 original size:24 final size:24
Alignment explanation
Indices: 50471064--50471153 Score: 90
Period size: 24 Copynumber: 3.7 Consensus size: 24
50471054 AAGAAATTTC
* **
50471064 AGCACTATGTGTGCGAGGTTATGC
1 AGCACTATGTGTGCGAGATTATAT
* * * *
50471088 GGCACTATGTGTGCGAAAACTACAT
1 AGCACTATGTGTGCG-AGATTATAT
* *
50471113 GGCACTATGAGTGCGAGATTATAT
1 AGCACTATGTGTGCGAGATTATAT
50471137 AGCACTATGTGTGCGAG
1 AGCACTATGTGTGCGAG
50471154 GAAACACGAC
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 35 0.67
25 17 0.33
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTATAT
Found at i:50484273 original size:30 final size:30
Alignment explanation
Indices: 50484237--50484293 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
50484227 TCCTTAACTC
50484237 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
50484267 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTTGAAAAATTACAATTTTGCC
50484294 TCTAGGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:50489732 original size:36 final size:37
Alignment explanation
Indices: 50489660--50489737 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
50489650 TTATTACGAA
* *
50489660 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
50489697 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
50489733 GTCTT
1 GTCTT
50489738 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:50489927 original size:47 final size:47
Alignment explanation
Indices: 50489856--50490174 Score: 487
Period size: 47 Copynumber: 6.7 Consensus size: 47
50489846 CCCTTCGGGA
* * * * * *
50489856 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50489903 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50489950 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50489997 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50490044 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50490091 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50490140 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
50490175 AGAATCCTAA
Statistics
Matches: 256, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 209 0.82
49 46 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50489934 original size:25 final size:25
Alignment explanation
Indices: 50489906--50489984 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50489896 ACTCGGCCCT
50489906 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50489931 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50489953 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50489978 ATCACAT
1 ATCACAT
50489985 CGGCTATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50498988 original size:49 final size:49
Alignment explanation
Indices: 50498935--50499159 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
50498925 CTGGTACGCA
50498935 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * ** * *
50498984 TAGTAGCCTGCACTTAGTACTACACAAGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * * * * *
50499034 TAGTAGCCTACAGTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
* *
50499085 TAGTAGCTTGCACTTTGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
50499134 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
50499160 CGTGACCTCA
Statistics
Matches: 145, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 66 0.46
50 45 0.31
51 34 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:50505114 original size:29 final size:28
Alignment explanation
Indices: 50505054--50505133 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
50505044 CATACATGCT
**
50505054 TATGGCCCACTAGGCCCAATCTTATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
50505082 TATGGCCCATTAGGCCCAAATCACATTTA
1 TATGGCCCACTAGGCCC-AATCACATTCA
*
50505111 TATGGCCCACTAGGCCTAATCAC
1 TATGGCCCACTAGGCCCAATCAC
50505134 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:50505378 original size:16 final size:16
Alignment explanation
Indices: 50505357--50505403 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
50505347 CCAAACTTTT
50505357 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
50505373 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
* * *
50505389 GGCATTTCGGTATTT
1 AGCTTTTCGGCATTT
50505404 GTCAATCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:50505388 original size:8 final size:8
Alignment explanation
Indices: 50505361--50505403 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
50505351 ACTTTTAGCT
50505361 TTTCGGCA
1 TTTCGGCA
* *
50505369 TTTCAGCT
1 TTTCGGCA
50505377 TTTCGGCA
1 TTTCGGCA
50505385 TTTCGGCA
1 TTTCGGCA
*
50505393 TTTCGGTA
1 TTTCGGCA
50505401 TTT
1 TTT
50505404 GTCAATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:50516618 original size:28 final size:28
Alignment explanation
Indices: 50516555--50516677 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
50516545 ATATTAAGTC
*
50516555 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50516582 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50516610 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50516638 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50516667 CGCACACTTAG
1 CGCACACTTAG
50516678 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50526689 original size:46 final size:46
Alignment explanation
Indices: 50526621--50526745 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
50526611 AACCCGCCCC
* *
50526621 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50526666 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50526712 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50526746 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
45 11 0.14
46 66 0.86
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50527199 original size:30 final size:30
Alignment explanation
Indices: 50527165--50527224 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50527155 ATTTAATACG
50527165 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50527195 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50527225 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50528573 original size:46 final size:46
Alignment explanation
Indices: 50528506--50528631 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
50528496 AACCCGCCCC
* * *
50528506 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50528552 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50528598 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50528632 TGCTCAATCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50529086 original size:30 final size:30
Alignment explanation
Indices: 50529052--50529112 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
50529042 CATTTAATAC
50529052 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
50529082 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
50529112 A
1 A
50529113 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:50530462 original size:46 final size:46
Alignment explanation
Indices: 50530395--50530520 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
50530385 AACCCGCCCC
* * *
50530395 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50530441 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50530487 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50530521 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50530972 original size:30 final size:30
Alignment explanation
Indices: 50530938--50530997 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50530928 ATTTAATACG
50530938 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50530968 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50530998 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50532374 original size:45 final size:46
Alignment explanation
Indices: 50532267--50532391 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
50532257 AACCCGCCCC
* * *
50532267 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50532313 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA-CCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50532358 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50532392 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 37 0.49
46 39 0.51
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50534212 original size:46 final size:46
Alignment explanation
Indices: 50534144--50534268 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
50534134 AACCCGCCCC
* * *
50534144 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50534189 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50534235 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50534269 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 11 0.14
46 65 0.86
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50534287 original size:46 final size:45
Alignment explanation
Indices: 50534146--50534287 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
50534136 CCCGCCCCTA
* ** * *
50534146 AGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
50534190 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
50534236 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
50534283 AGTGA
1 AGTGA
50534288 CATGTCACTT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
45 9 0.10
46 72 0.83
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:50534723 original size:30 final size:30
Alignment explanation
Indices: 50534689--50534748 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50534679 ATTTAATACG
50534689 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50534719 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50534749 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50536863 original size:45 final size:46
Alignment explanation
Indices: 50536747--50536869 Score: 212
Period size: 46 Copynumber: 2.7 Consensus size: 46
50536737 AACCCGCCCC
* * *
50536747 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50536793 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50536839 TAAGT-AACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
50536870 ATGCTCAATC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 26 0.35
46 48 0.65
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50537312 original size:28 final size:29
Alignment explanation
Indices: 50537281--50537338 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
50537271 CATTTAATAC
50537281 AAACTTTGAAAAATTACAC-TTTGCCCCT
1 AAACTTTGAAAAATTACACTTTTGCCCCT
* *
50537309 AAACTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGAAAAATTACACTTTTGCCCCT
50537338 A
1 A
50537339 GGCCTCGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (29 bp):
AAACTTTGAAAAATTACACTTTTGCCCCT
Found at i:50538668 original size:45 final size:46
Alignment explanation
Indices: 50538604--50538728 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
50538594 AACCCGCCCC
* * * *
50538604 TAAGTGAACTCAGACTCAACTAAACGAGCTCGGGCA-TCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50538649 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
50538695 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50538729 TGCTCAATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 32 0.43
46 42 0.57
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50539177 original size:30 final size:29
Alignment explanation
Indices: 50539142--50539201 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
50539132 CACTTAATAC
50539142 AAACTTTGGAAAAAATACACTTTTGCCCCT
1 AAACTTT-GAAAAAATACACTTTTGCCCCT
* * *
50539172 AAACTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGAAAAAATACACTTTTGCCCCT
50539201 A
1 A
50539202 GCTCGGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (29 bp):
AAACTTTGAAAAAATACACTTTTGCCCCT
Found at i:50540564 original size:46 final size:46
Alignment explanation
Indices: 50540468--50540588 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
50540458 CCGCCCCTAA
* * *
50540468 TGAACTCAGACTCAACTCAACGA-CTCGGGCATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
50540513 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
50540559 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
50540589 TGCTCAATCA
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 22 0.31
46 50 0.69
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
Found at i:50541037 original size:29 final size:30
Alignment explanation
Indices: 50541005--50541064 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
50540995 CATTTAATAC
50541005 AAACTTTGGAAAAATTACAC-TTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
50541034 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
50541064 A
1 A
50541065 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Done.