Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 148 of 295
Found at i:50543144 original size:46 final size:46
Alignment explanation
Indices: 50543077--50543202 Score: 234
Period size: 46 Copynumber: 2.7 Consensus size: 46
50543067 AACCCGCCCC
* *
50543077 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50543123 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50543169 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50543203 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50543657 original size:30 final size:29
Alignment explanation
Indices: 50543623--50543681 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
50543613 ATTTAATACG
50543623 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTT-GAAAAATTACACTTTTGCCCCTA
* *
50543653 AACTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGAAAAATTACACTTTTGCCCCTA
50543682 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (29 bp):
AACTTTGAAAAATTACACTTTTGCCCCTA
Found at i:50545028 original size:46 final size:46
Alignment explanation
Indices: 50544961--50545086 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
50544951 TAACCCGCCC
* * *
50544961 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50545007 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50545053 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50545087 TGCTCAATCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50545540 original size:30 final size:30
Alignment explanation
Indices: 50545506--50545566 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
50545496 CATTTAATAC
50545506 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
50545536 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
50545566 A
1 A
50545567 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:50546915 original size:46 final size:46
Alignment explanation
Indices: 50546848--50546973 Score: 234
Period size: 46 Copynumber: 2.7 Consensus size: 46
50546838 AACCCGCCCC
* *
50546848 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50546894 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50546940 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50546974 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50547429 original size:30 final size:30
Alignment explanation
Indices: 50547395--50547454 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50547385 ATTTAATACG
50547395 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50547425 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50547455 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50552078 original size:98 final size:98
Alignment explanation
Indices: 50551919--50552111 Score: 350
Period size: 98 Copynumber: 2.0 Consensus size: 98
50551909 GAAATTGATG
50551919 TATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATG
1 TATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATG
*
50551984 TGGTAAAGCCGAATGGTTAATGTGAAATATATA
66 TGGTAAAGCCGAATGGCTAATGTGAAATATATA
* *
50552017 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATG
*
50552082 TGGTAAAGCCGAATGGCTAGTGTGAAATAT
66 TGGTAAAGCCGAATGGCTAATGTGAAATAT
50552112 GTAGGTGATG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
TATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAATATATA
Found at i:50552129 original size:50 final size:48
Alignment explanation
Indices: 50551916--50552114 Score: 335
Period size: 48 Copynumber: 4.1 Consensus size: 48
50551906 GCGGAAATTG
* *
50551916 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
50551964 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
50552014 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
50552062 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
50552110 ATGTA
1 ATGTA
50552115 GGTGATGTGT
Statistics
Matches: 142, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
48 94 0.66
49 4 0.03
50 44 0.31
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:50552480 original size:37 final size:37
Alignment explanation
Indices: 50552263--50552479 Score: 353
Period size: 37 Copynumber: 5.9 Consensus size: 37
50552253 AAATATATTT
*
50552263 CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
50552300 CGGGTAAGACCCGAGGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
50552337 CGGGTAAGACCCGAGGACTACGTGTGGAGTTTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
50552374 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
50552411 TGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* **
50552448 CGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
50552480 TCATCTGAGC
Statistics
Matches: 169, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 169 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:50555468 original size:40 final size:40
Alignment explanation
Indices: 50555423--50555508 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
50555413 CCTGGATGTC
*
50555423 ATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCAGATACA
1 ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCAGATACA
* *
50555463 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCAGATACA
50555503 ATTCCA
1 ATTCCA
50555509 CATCAAATGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (40 bp):
ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCAGATACA
Found at i:50558461 original size:32 final size:32
Alignment explanation
Indices: 50558420--50558480 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
50558410 TAAGGCTTTG
50558420 ATAAAGTGGCAAGGTGGTGCCACCAGATTTCT
1 ATAAAGTGGCAAGGTGGTGCCACCAGATTTCT
50558452 ATAAAGTGGCAAGGTGGTGCCACCAGATT
1 ATAAAGTGGCAAGGTGGTGCCACCAGATT
50558481 CCTAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (32 bp):
ATAAAGTGGCAAGGTGGTGCCACCAGATTTCT
Found at i:50562123 original size:24 final size:24
Alignment explanation
Indices: 50562113--50562226 Score: 183
Period size: 24 Copynumber: 4.8 Consensus size: 24
50562103 GACATCCCAA
* *
50562113 TCCGCACACATAGTGCCATATAAA
1 TCCGCACACATAGTGCCATACAAG
* *
50562137 TCCACACACATAGTGCCATACAAT
1 TCCGCACACATAGTGCCATACAAG
*
50562161 TCCGCACACATAGTACCATACAAG
1 TCCGCACACATAGTGCCATACAAG
50562185 TCCGCACACATAGTGCCATACAAG
1 TCCGCACACATAGTGCCATACAAG
50562209 TCCGCACACATAGTGCCA
1 TCCGCACACATAGTGCCA
50562227 AATTCATTTC
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.35, C:0.33, G:0.13, T:0.18
Consensus pattern (24 bp):
TCCGCACACATAGTGCCATACAAG
Found at i:50562123 original size:48 final size:48
Alignment explanation
Indices: 50562068--50562226 Score: 158
Period size: 48 Copynumber: 3.3 Consensus size: 48
50562058 ATGTTAGCCG
* * * * *
50562068 GCACACATAATGCCTTAGAAATTCACATACATATTGACATCCCAA-TCC
1 GCACACATAATGCCATAGAAATCCACACACATAGTGACAT-ACAATTCC
* * *
50562116 GCACACATAGTGCCATATAAATCCACACACATAGTGCCATACAATTCC
1 GCACACATAATGCCATAGAAATCCACACACATAGTGACATACAATTCC
* * * * * * *
50562164 GCACACATAGTACCATACAAGTCCGCACACATAGTGCCATACAAGTCC
1 GCACACATAATGCCATAGAAATCCACACACATAGTGACATACAATTCC
*
50562212 GCACACATAGTGCCA
1 GCACACATAATGCCA
50562227 AATTCATTTC
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 3 0.03
48 93 0.97
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.20
Consensus pattern (48 bp):
GCACACATAATGCCATAGAAATCCACACACATAGTGACATACAATTCC
Found at i:50570090 original size:24 final size:24
Alignment explanation
Indices: 50570063--50570178 Score: 160
Period size: 24 Copynumber: 4.8 Consensus size: 24
50570053 TTGACATTCC
*
50570063 AATCCGCACACATAGTGCCATATA
1 AATCCGCACACATAGTGCCATACA
* *
50570087 AATCCGCATATATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
50570111 ATTCCGCACACATAGTACCATACA
1 AATCCGCACACATAGTGCCATACA
*
50570135 AGTCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
50570159 AGTCTGCACACATAGTGCCA
1 AATCCGCACACATAGTGCCA
50570179 AAGTCATTTC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.21
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:50570174 original size:72 final size:72
Alignment explanation
Indices: 50570018--50570178 Score: 184
Period size: 72 Copynumber: 2.2 Consensus size: 72
50570008 CCATGTTAGC
* * * *
50570018 CTGCACACATAGTGCCTTAGCAATTCACATACATATTGACATTCCAATCCGCACACATAGTGCCA
1 CTGCACACATAGTGCCATAGCAATTCACACACATAGTGACATTACAATCCGCACACATAGTGCCA
*
50570083 TATAAAT
66 TACAAAT
* * * *
50570090 CCGCATATATAGTGCCATA-CAATTCCGCACACATAGT-ACCA-TACAAGTCCGCACACATAGTG
1 CTGCACACATAGTGCCATAGCAATT-CACACACATAGTGA-CATTACAA-TCCGCACACATAGTG
*
50570152 CCATACAAGT
63 CCATACAAAT
50570162 CTGCACACATAGTGCCA
1 CTGCACACATAGTGCCA
50570179 AAGTCATTTC
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
71 10 0.14
72 63 0.86
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (72 bp):
CTGCACACATAGTGCCATAGCAATTCACACACATAGTGACATTACAATCCGCACACATAGTGCCA
TACAAAT
Found at i:50581957 original size:14 final size:15
Alignment explanation
Indices: 50581940--50581968 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50581930 TCACGAAAAT
50581940 TTCACA-AATATAAA
1 TTCACACAATATAAA
50581954 TTCACACAATATAAA
1 TTCACACAATATAAA
50581969 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACAATATAAA
Found at i:50586442 original size:39 final size:40
Alignment explanation
Indices: 50586205--50586446 Score: 348
Period size: 40 Copynumber: 6.1 Consensus size: 40
50586195 GATGATAACA
** * *
50586205 AAGGCATTTGTGCTTGTGACTA-ATTCCAGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCG
*
50586245 AAGGCATTTGTGCGAGTTACTATATTCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
50586285 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
50586325 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
50586365 AAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* * * *
50586404 AAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCG
1 AAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCG
50586443 AAGG
1 AAGG
50586447 TACTTGGTTT
Statistics
Matches: 186, Mismatches: 13, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
38 5 0.03
39 37 0.20
40 143 0.77
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:50595845 original size:31 final size:31
Alignment explanation
Indices: 50595807--50595885 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
50595797 TATCAGAACT
* * *
50595807 AGAATCAGAATTAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
50595838 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
50595869 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
50595886 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:50595846 original size:6 final size:6
Alignment explanation
Indices: 50595798--50595885 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
50595788 AAGAAACATT
* * *
50595798 ATCAGA A-CTAGA ATCAGA ATTAGA ATTAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
50595847 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
50595886 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:50596405 original size:81 final size:80
Alignment explanation
Indices: 50596296--50596529 Score: 306
Period size: 81 Copynumber: 2.9 Consensus size: 80
50596286 TTTCCCCCAC
* * *
50596296 AAGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
1 AAGGGTATTTCGATAATTCTACCTTACAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
50596361 GGTATTTCTACCCTAT
65 AGTAATTCTACCCTAT
* * * * *
50596377 AAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAGGGGTATTTC
1 AAGGGTATTTCGATAATTCTACCTTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
50596442 AGTAATTCTACCCTAT
65 AGTAATTCTACCCTAT
* * * *
50596458 AGGGGTATTTCGATAATTCTACCTTACAAGGGTATTTCGGTAATTTTACCCTACAAGTGTATTTC
1 AAGGGTATTTCGATAATTCTACCTTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
50596523 AATAATT
65 AGTAATT
50596530 TTGTAAATCG
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
81 128 0.98
82 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (80 bp):
AAGGGTATTTCGATAATTCTACCTTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
GTAATTCTACCCTAT
Found at i:50596531 original size:27 final size:27
Alignment explanation
Indices: 50596280--50596522 Score: 270
Period size: 27 Copynumber: 9.0 Consensus size: 27
50596270 GGGGTAAAAT
* * * * *
50596280 GGTAATTTTCCCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50596307 GATAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50596334 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50596361 GGTATTTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50596388 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50596415 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50596442 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50596469 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50596496 GGTAATTTTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50596523 AATAATTTTG
Statistics
Matches: 182, Mismatches: 34, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50596711 original size:27 final size:27
Alignment explanation
Indices: 50596574--50596800 Score: 229
Period size: 27 Copynumber: 8.4 Consensus size: 27
50596564 TCGAGGGTGC
* ** *
50596574 TTTGATAATTTTACAAGTCGAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
*** *
50596601 TTCATTAATTTTACAAATCAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
** * * *
50596628 TTCAGTAATTTTGCAAACTATGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
* * * * *
50596655 TTCGATAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
50596682 TTTGGTAATTTTACAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
* *
50596709 TTTGGTAATTTTATAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
** *
50596736 TTTGGTAATTTTGTAAACTAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
*
50596763 TTTGGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
*
50596790 TTTGGTGATTT
1 TTTGGTAATTT
50596801 GGTAAACTAA
Statistics
Matches: 168, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAAGGGTAT
Found at i:50596806 original size:54 final size:54
Alignment explanation
Indices: 50596606--50596818 Score: 266
Period size: 54 Copynumber: 4.0 Consensus size: 54
50596596 GGTATTTCAT
* * ** * * *
50596606 TAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAACTATGGGTATTTCGA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACTAAGGGTATTTTGG
* * * *
50596660 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACTAAGGGTATTTTGG
* *
50596714 TAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACTAAGGGTATTTTGG
* * * *
50596768 TAATTTTACAAACCAGGGGTATTTTGGTGATTTGGTAAACTAA-AGTATTTT
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACTAAGGGTATTTT
50596819 AAACAGGGAT
Statistics
Matches: 140, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
53 7 0.05
54 133 0.95
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACTAAGGGTATTTTGG
Found at i:50599827 original size:171 final size:170
Alignment explanation
Indices: 50599534--50599869 Score: 568
Period size: 171 Copynumber: 2.0 Consensus size: 170
50599524 GCTATGTGTT
* **
50599534 ATTTTTGAAAGACGGCCTATGTTATTTGACATGTTCTTAAAAAAAGTTACAATACATACATATTT
1 ATTTTTGAAAGACAGCCTATGTTATTTGACATGTTCTTAAAAAAAAATACAATACATACATATTT
50599599 ATTAGTAGTAATTCGTCTTTTTTTTTAGCTGAAGTGATTAATTCCATAATTTGAGAAGAAGCTCA
66 ATTAGTAGTAATTCGTC-TTTTTTTTAGCTGAAGTGATTAATTCCATAATTTGAGAAGAAGCTCA
50599664 TTTGAATTCAATTGATGATAAGTTATTTTTCTAGTTAGGTA
130 TTTGAATTCAATTGATGATAAGTTATTTTTCTAGTTAGGTA
*
50599705 ATTTTTGAAAGATAGCCTATGTTATTTGACATGTTCTTAAAAAAAACAATACAATACATACATAT
1 ATTTTTGAAAGACAGCCTATGTTATTTGACATGTTCTT-AAAAAAA-AATACAATACATACATAT
*
50599770 TTATTAGTAGTAATTCGTC-TTTTTTTAGCTTAAGTGATTAATTCCAT-ATTCTGAGAAGAAGCT
64 TTATTAGTAGTAATTCGTCTTTTTTTTAGCTGAAGTGATTAATTCCATAATT-TGAGAAGAAGCT
*
50599833 CATTTGTATTCAATTGATGATAAGTTATTTTTCTAGT
128 CATTTGAATTCAATTGATGATAAGTTATTTTTCTAGT
50599870 CATGTAACTT
Statistics
Matches: 156, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
170 3 0.02
171 111 0.71
172 7 0.04
173 35 0.22
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (170 bp):
ATTTTTGAAAGACAGCCTATGTTATTTGACATGTTCTTAAAAAAAAATACAATACATACATATTT
ATTAGTAGTAATTCGTCTTTTTTTTAGCTGAAGTGATTAATTCCATAATTTGAGAAGAAGCTCAT
TTGAATTCAATTGATGATAAGTTATTTTTCTAGTTAGGTA
Found at i:50602430 original size:115 final size:115
Alignment explanation
Indices: 50602228--50602490 Score: 445
Period size: 115 Copynumber: 2.3 Consensus size: 115
50602218 CTAAAAATGA
* * * *
50602228 GTAAGACCATAGCTAAAAGATGCTGTGGCATCATGATATAAATAAAACCATAACTGAAAGACATT
1 GTAAGACCATAGTTGAAAGATGCTATGGCATCATGATATAAATAAAACCATAACTAAAAGACATT
* *
50602293 ATGGTATCCTTTCATAGTCCATTGAGATGGTAAACACGGAGTTATTTTGT
66 ATGGTATCCTTTCATAGTCCATTGAGATGGTAAACACGAACTTATTTTGT
*
50602343 GTAAGACCATAATTGAAAGATGCTATGGCATCATGATATAAATAAAACCATAACTAAAAGACATT
1 GTAAGACCATAGTTGAAAGATGCTATGGCATCATGATATAAATAAAACCATAACTAAAAGACATT
*
50602408 ATGGTATCCTTTGATAGTCCATTGAGATGGTAAACACGAACTTATTTTGT
66 ATGGTATCCTTTCATAGTCCATTGAGATGGTAAACACGAACTTATTTTGT
*
50602458 GTAAGACCATAGTTGAAAGATGTTATGGCATCA
1 GTAAGACCATAGTTGAAAGATGCTATGGCATCA
50602491 AGTGATGATT
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 138 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (115 bp):
GTAAGACCATAGTTGAAAGATGCTATGGCATCATGATATAAATAAAACCATAACTAAAAGACATT
ATGGTATCCTTTCATAGTCCATTGAGATGGTAAACACGAACTTATTTTGT
Found at i:50607340 original size:46 final size:49
Alignment explanation
Indices: 50607226--50607347 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 49
50607216 CGTCTTCGAC
* * *
50607226 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATCTATATATCTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCA-CTATATATCTAAT
* * *
50607276 AT-GAGCTTATATGGCTCATTCCTGTCTCCAAAG-C-C-ATATATCTGAT
1 ATGGA-CTTACATGACTCATTCCTGTCTCCAAAGCCACTATATATCTAAT
*
50607322 ATGGACTTACATGACTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
50607348 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
46 30 0.49
47 3 0.05
49 3 0.05
50 25 0.41
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCACTATATATCTAAT
Found at i:50615079 original size:46 final size:47
Alignment explanation
Indices: 50614973--50615094 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
50614963 TGTCTTCGAC
* * *
50614973 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATAGATATATCTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
50615023 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
50615069 ATGGACTTACATGACTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
50615095 CTCTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:50617255 original size:70 final size:71
Alignment explanation
Indices: 50617135--50617284 Score: 234
Period size: 70 Copynumber: 2.1 Consensus size: 71
50617125 GGGGAATCAT
*
50617135 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTC-AA-ATATCAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAT-AATG
50617198 GATATCG
65 GATATCG
**
50617205 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATATAATG
50617269 GATATCG
65 GATATCG
50617276 CACTTAGCA
1 CACTTAGCA
50617285 CCACCAATGA
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
69 7 0.09
70 43 0.58
71 20 0.27
72 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATATAATGG
ATATCG
Found at i:50617327 original size:26 final size:26
Alignment explanation
Indices: 50617297--50617348 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
50617287 ACCAATGAAC
*
50617297 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
50617323 CGGGGAATCAGCACATAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
50617349 TTCACATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:50617386 original size:102 final size:103
Alignment explanation
Indices: 50617204--50617424 Score: 365
Period size: 102 Copynumber: 2.2 Consensus size: 103
50617194 AATGGATATC
50617204 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
* *
50617269 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
50617307 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
* *
50617371 GATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
50617409 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
50617425 TTTATATACA
Statistics
Matches: 111, Mismatches: 6, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
102 93 0.84
103 18 0.16
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:50617782 original size:29 final size:29
Alignment explanation
Indices: 50617749--50617812 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
50617739 TAATCCACCA
50617749 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
50617778 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
50617808 CCCAA
1 CCCAA
50617813 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:50617786 original size:30 final size:30
Alignment explanation
Indices: 50617756--50617812 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50617746 CCACCCAACT
50617756 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
50617785 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
50617813 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:50618688 original size:48 final size:48
Alignment explanation
Indices: 50618617--50618721 Score: 192
Period size: 48 Copynumber: 2.2 Consensus size: 48
50618607 TGTTACAACG
*
50618617 TATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
*
50618665 TATACGTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
50618713 TATACATAT
1 TATACATAT
50618722 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
Found at i:50624536 original size:41 final size:40
Alignment explanation
Indices: 50624478--50624844 Score: 320
Period size: 41 Copynumber: 8.9 Consensus size: 40
50624468 TAGTCCCAGT
* *
50624478 TATAACACC-GCTCGAATGCTCTGCGGAACCTAGCTCCGAA
1 TATAACACCAGCTCGAATGCTCTTCGGAACTTAGC-CCGAA
* *
50624518 TATAACACCAGCTCGAATGCTCTTCGGACCTTAGCTCCGGA
1 TATAACACCAGCTCGAATGCTCTTCGGAACTTAGC-CCGAA
*
50624559 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAG-CCG-A
1 TATAACACCAGCTCGAATGCTCTTC-GGAACTTAGCCCGAA
* * *
50624598 TATAACACCAGCACGTAATGCTCTTCGGGACTTAGCCCGGA
1 TATAACACCAGCTCG-AATGCTCTTCGGAACTTAGCCCGAA
* * * *
50624639 T-TATCACTAGCACGAAT-CTTTTC-GATACTTAGCCCAGAA
1 TATAACACCAGCTCGAATGCTCTTCGGA-ACTTAGCCC-GAA
* *
50624678 TATAACACCAG-TCAAATGCTCTTCGGGAACTTTTTAGCCCGGA
1 TATAACACCAGCTCGAATGCTCTTC-GGAAC---TTAGCCCGAA
* * * *
50624721 TATGATCACTAGCACGAATGCTC-TC-GAGACTTAGCCCCGAT
1 TAT-AACACCAGCTCGAATGCTCTTCGGA-ACTTAG-CCCGAA
*
50624762 TATAACACCAGCTCGAATGCTCTTCGCGGACTTAGCCCGAGA
1 TATAACACCAGCTCGAATGCTCTTCG-GAACTTAGCCCGA-A
* *
50624804 TGATAACACCAGGCTCGAACGCTCTTCGGGAACCTAGCCCG
1 T-ATAACACCA-GCTCGAATGCTCTTC-GGAACTTAGCCCG
50624845 GGTATCTAAC
Statistics
Matches: 270, Mismatches: 32, Indels: 46
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.00
38 14 0.05
39 32 0.12
40 68 0.25
41 70 0.26
42 20 0.07
43 17 0.06
44 39 0.14
45 9 0.03
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
TATAACACCAGCTCGAATGCTCTTCGGAACTTAGCCCGAA
Found at i:50624627 original size:40 final size:41
Alignment explanation
Indices: 50624478--50624845 Score: 341
Period size: 40 Copynumber: 9.0 Consensus size: 41
50624468 TAGTCCCAGT
* * *
50624478 TATAACACC-GCTCGAATGCTCTGCGGAACC-TAGCTCCGAA
1 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAGC-CCGGA
50624518 TATAACACCAGCTCGAATGCTCTTC-GGACCTTAGCTCCGGA
1 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAGC-CCGGA
50624559 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAG-CC-GA
1 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAGCCCGGA
*
50624598 TATAACACCAGCACGTAATGCTCTTCGGGA-CTTAGCCCGGA
1 TATAACACCAGCTCG-AATGCTCTTCGGGACCTTAGCCCGGA
* * * * ** *
50624639 T-TATCACTAGCACGAAT-CTTTTCGATA-CTTAGCCCAGAA
1 TATAACACCAGCTCGAATGCTCTTCGGGACCTTAGCCC-GGA
* *
50624678 TATAACACCAG-TCAAATGCTCTTCGGGAACTTTTTAGCCCGGA
1 TATAACACCAGCTCGAATGCTCTTCGGG-AC--CTTAGCCCGGA
* * * * *
50624721 TATGATCACTAGCACGAATGCTC-TCGAGA-CTTAGCCCCGA
1 TAT-AACACCAGCTCGAATGCTCTTCGGGACCTTAGCCCGGA
50624761 TTATAACACCAGCTCGAATGCTCTTCGCGGA-CTTAGCCCGAGA
1 -TATAACACCAGCTCGAATGCTCTTCG-GGACCTTAGCCCG-GA
*
50624804 TGATAACACCAGGCTCGAACGCTCTTCGGGAACC-TAGCCCGG
1 T-ATAACACCA-GCTCGAATGCTCTTCGGG-ACCTTAGCCCGG
50624846 GTATCTAACT
Statistics
Matches: 273, Mismatches: 32, Indels: 43
0.78 0.09 0.12
Matches are distributed among these distances:
38 15 0.05
39 31 0.11
40 80 0.29
41 58 0.21
42 20 0.07
43 20 0.07
44 40 0.15
45 9 0.03
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (41 bp):
TATAACACCAGCTCGAATGCTCTTCGGGACCTTAGCCCGGA
Found at i:50628457 original size:25 final size:25
Alignment explanation
Indices: 50628423--50628472 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
50628413 CACCACTGAA
* *
50628423 TCGGGGAATCATCACTTAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
50628448 TCGGGGAATCAGCACATAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
50628473 CCTTTTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.32, G:0.22, T:0.16
Consensus pattern (25 bp):
TCGGGGAATCAGCACATAGCAACCC
Found at i:50628547 original size:70 final size:70
Alignment explanation
Indices: 50628435--50628583 Score: 237
Period size: 70 Copynumber: 2.1 Consensus size: 70
50628425 GGGGAATCAT
* *
50628435 CACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGGA
1 CACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGGA
50628499 TATCG
66 TATCG
***
50628504 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAA-CCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
50628569 ATATCG
65 ATATCG
50628575 CACTTAGCA
1 CACTTAGCA
50628584 CCACCAATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 10 0.14
70 33 0.45
71 30 0.41
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (70 bp):
CACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGGA
TATCG
Found at i:50628687 original size:104 final size:103
Alignment explanation
Indices: 50628503--50628725 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
50628493 AATGGATATC
50628503 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
50628568 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
50628606 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
50628671 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
50628710 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
50628726 TTATATACAA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:50629086 original size:29 final size:29
Alignment explanation
Indices: 50629053--50629116 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
50629043 TAATCCACCA
50629053 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
50629082 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
50629112 CCCAA
1 CCCAA
50629117 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:50629090 original size:30 final size:30
Alignment explanation
Indices: 50629060--50629116 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50629050 CCACCCAACT
50629060 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
50629089 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
50629117 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:50630004 original size:48 final size:48
Alignment explanation
Indices: 50629933--50630037 Score: 192
Period size: 48 Copynumber: 2.2 Consensus size: 48
50629923 TGTTACAACG
*
50629933 TATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
*
50629981 TATACGTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
50630029 TATACATAT
1 TATACATAT
50630038 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
Found at i:50633413 original size:40 final size:40
Alignment explanation
Indices: 50633367--50633760 Score: 574
Period size: 40 Copynumber: 9.8 Consensus size: 40
50633357 GAATACACAT
* * *
50633367 CACCAGCAT-GAATGCTCTTCGAGACTTAGCCCAGTTATAA
1 CACCAGC-TCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
50633407 CACCAGCTCGAATGCTCTTCGGAACCTAGCCCGAATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
50633447 CACCAGCTCGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
50633487 CACCAGCTCGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
50633527 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
50633567 CACTAGCACGAATGCTTTTCGAGACTTAGCCCAGATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
50633607 CACCAGCTCAAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
50633647 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
50633687 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
50633727 CACCAGCTCGAACGCTCTTCGGGACCTAGCCCGG
1 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGG
50633761 GTATCTAACT
Statistics
Matches: 320, Mismatches: 33, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 319 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:50635083 original size:37 final size:37
Alignment explanation
Indices: 50635024--50635169 Score: 204
Period size: 37 Copynumber: 3.9 Consensus size: 37
50635014 AGCTCAGATG
* *
50635024 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
50635061 AAATCTCCACACGTAGTCATCGGGTCTTCCCCAGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
50635097 TATATTTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50635135 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
50635170 ATATATTTCC
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
36 1 0.01
37 92 0.98
38 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50635122 original size:74 final size:74
Alignment explanation
Indices: 50635029--50635180 Score: 250
Period size: 74 Copynumber: 2.1 Consensus size: 74
50635019 AGATGAAATC
* * *
50635029 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTCCCCA
1 TCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCA
50635094 GAATATATT
66 GAATATATT
* * *
50635103 TCCACACGTAGTCATCGGGTCTTACCCGAACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCA
50635168 GAATATATT
66 GAATATATT
50635177 TCCA
1 TCCA
50635181 AGTTTCATGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (74 bp):
TCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCA
GAATATATT
Found at i:50635370 original size:48 final size:48
Alignment explanation
Indices: 50635316--50635599 Score: 487
Period size: 48 Copynumber: 5.9 Consensus size: 48
50635306 ACACACCTCC
* * *
50635316 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
50635364 TACATATTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50635412 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50635460 TACATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50635508 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50635556 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
50635600 ATTTATCTTG
Statistics
Matches: 224, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 224 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:50640949 original size:56 final size:56
Alignment explanation
Indices: 50640858--50640980 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
50640848 GAGATTGGCG
* * *
50640858 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
50640915 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
50640970 CTGAGTGTGCG
1 CTAAGTGTGCG
50640981 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:50640967 original size:27 final size:28
Alignment explanation
Indices: 50640858--50640980 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
50640848 GAGATTGGCG
* * * *
50640858 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
50640887 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50640915 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50640943 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50640970 CTGAGTGTGCG
1 CTAAGTGTGCG
50640981 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50640991 original size:27 final size:27
Alignment explanation
Indices: 50640883--50640993 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
50640873 TAAATTGTAC
* * *
50640883 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50640911 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50640939 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
50640966 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
50640993 A
1 A
50640994 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:50642874 original size:37 final size:37
Alignment explanation
Indices: 50642810--50642892 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
50642800 AGCTCAGATG
* *
50642810 AAATCTCCACACGAATTTATCGAGTCTTACCCGAACA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACA
* * *
50642847 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACA
50642884 AAATCTCCA
1 AAATCTCCA
50642893 GGACAAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACA
Found at i:50642898 original size:14 final size:14
Alignment explanation
Indices: 50642879--50642906 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50642869 GGTCTTACCC
50642879 GGACAAAATCTCCA
1 GGACAAAATCTCCA
50642893 GGACAAAATCTCCA
1 GGACAAAATCTCCA
50642907 CACGTAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (14 bp):
GGACAAAATCTCCA
Found at i:50642920 original size:51 final size:51
Alignment explanation
Indices: 50642844--50642943 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
50642834 TCTTACCCGA
50642844 ACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAGG
1 ACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAGG
50642895 ACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
1 ACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
50642944 CACGTAGTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (51 bp):
ACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAGG
Found at i:50642943 original size:37 final size:37
Alignment explanation
Indices: 50642893--50643009 Score: 207
Period size: 37 Copynumber: 3.1 Consensus size: 37
50642883 AAAATCTCCA
50642893 GGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
50642930 GGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
*
50642967 GGACATAATCTCCACACGTAGTCATCGGGTCTTAACCC
1 GGACAAAATCTCCACACGTAGTCATCGGGTCTT-ACCC
*
50643005 AGACA
1 GGACA
50643010 TAGTCACCAC
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 69 0.90
38 8 0.10
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
GGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
Found at i:50642959 original size:88 final size:88
Alignment explanation
Indices: 50642810--50642980 Score: 288
Period size: 88 Copynumber: 1.9 Consensus size: 88
50642800 AGCTCAGATG
* *
50642810 AAATCTCCACACGAATTTATCGAGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
50642875 ACCCGGACAAAATCTCCAGGACA
66 ACCCGGACAAAATCTCCAGGACA
* * *
50642898 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
*
50642963 ACCCGGACATAATCTCCA
66 ACCCGGACAAAATCTCCA
50642981 CACGTAGTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (88 bp):
AAATCTCCACACGAAGTCATCGAGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
ACCCGGACAAAATCTCCAGGACA
Found at i:50643036 original size:38 final size:38
Alignment explanation
Indices: 50642894--50643046 Score: 148
Period size: 37 Copynumber: 4.0 Consensus size: 38
50642884 AAATCTCCAG
* * * *
50642894 GACAAAATCTCCACACGTAGTCATCGGGTCTT-ACCCG
1 GACATAATCACCACACATAGTCATCGGGTCTTAACCCA
* * * *
50642931 GACAAAATCTCCACACGTAGTCATCGGGTCTT-ACCCG
1 GACATAATCACCACACATAGTCATCGGGTCTTAACCCA
* *
50642968 GACATAATCTCCACACGTAGTCATCGGGTCTTAACCCA
1 GACATAATCACCACACATAGTCATCGGGTCTTAACCCA
* * * *
50643006 GACATAGTCACCACATATGGTCATCTGGTCTTTAATCCCA
1 GACATAATCACCACACATAGTCATCGGGTC-TTAA-CCCA
50643046 G
1 G
50643047 GTTTACATCA
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
37 68 0.65
38 28 0.27
39 4 0.04
40 5 0.05
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (38 bp):
GACATAATCACCACACATAGTCATCGGGTCTTAACCCA
Found at i:50643316 original size:46 final size:46
Alignment explanation
Indices: 50643192--50643316 Score: 178
Period size: 46 Copynumber: 2.7 Consensus size: 46
50643182 TATATATACA
* * * * *
50643192 CATCTCATACATATCTCACATTAGCCATTTGGATTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
50643238 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
50643284 TATCTCATACACATTTCGCATTAGCCATTCGGC
1 CATCTCATACACATTTCGCATTAGCCATTCGGC
50643317 CTTATTACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:50643362 original size:47 final size:47
Alignment explanation
Indices: 50643302--50643542 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
50643292 ACACATTTCG
* *
50643302 CATTAGCCATTCGGCCTTATTACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
50643349 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
50643396 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
50643443 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* **
50643494 CATT-GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
50643540 CAT
1 CAT
50643543 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
46 25 0.14
47 111 0.62
48 1 0.01
49 1 0.01
50 16 0.09
51 24 0.13
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:50645566 original size:13 final size:13
Alignment explanation
Indices: 50645548--50645572 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50645538 AACATGAGAA
50645548 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
50645561 CTTTTTTTTTTC
1 CTTTTTTTTTTC
50645573 CTTCATCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
CTTTTTTTTTTCT
Found at i:50647139 original size:40 final size:40
Alignment explanation
Indices: 50647089--50647577 Score: 701
Period size: 40 Copynumber: 12.2 Consensus size: 40
50647079 AGGTTTAACT
* * *
50647089 CGGATTTATCACTAGCATGATTGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* **
50647129 CGGTTATATCACTAGCACGAATGCTCTTCGAAACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* * **
50647169 CGGATATATCACCAGCACGAGTGCTCTTCGAAACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* * * * *
50647209 C-GATCATATTACCAGCATGAATGCTCTTCAGAACTTAGCC
1 CGGAT-ATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* * *
50647249 CGGACATATTACCAGCACGAATGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* *
50647289 CGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* *
50647329 CGAATATATCACTAGCACGATTGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* *
50647369 CAGATATATCACTAGCACGATTGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
50647409 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
*
50647449 CGGATATATCACTAGCACGATTGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
* * *
50647489 TGAATATATCACCAGCACGAATGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
*
50647529 CGGATATATCACTAGCACGATTGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
50647569 CGGATATAT
1 CGGATATAT
50647578 ATAACTCTCA
Statistics
Matches: 409, Mismatches: 38, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 3 0.01
40 404 0.99
41 2 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCC
Found at i:50648909 original size:37 final size:37
Alignment explanation
Indices: 50648849--50649071 Score: 347
Period size: 37 Copynumber: 6.0 Consensus size: 37
50648839 AGCTCAGATG
* * *
50648849 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50648886 AAATCTCCACACGTAGTCGTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50648923 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
50648960 AAATCTCTACACGTAGTCATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50648997 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
50649034 TAATCTCCACACATAGTCATCGGGTCTTAACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTT-ACCCGGACA
50649072 TAGTCACCAC
Statistics
Matches: 173, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
37 165 0.95
38 8 0.05
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50649307 original size:46 final size:46
Alignment explanation
Indices: 50649254--50649390 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
50649244 TATATATACA
* * * *
50649254 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
50649300 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
50649346 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACTACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
50649391 ATACATGTTC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:50649457 original size:51 final size:47
Alignment explanation
Indices: 50649364--50649510 Score: 174
Period size: 51 Copynumber: 3.1 Consensus size: 47
50649354 ACACATTTCG
* *
50649364 CATTAGCCATTCGGCCTTA-C-TACATATATACATGTTCACATTCATCA
1 CATT-GCCATTCGGCCTTATCGCATATATATACA-GTTCACATTCATCA
50649411 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATT-GCCATTCGGCCTTAT--CGCATATATATACA-GTTCACATTCATCA
* **
50649462 CATTGCCATTCGGCCTTATCTCATATATGCACA-TTCACATTCATCA
1 CATTGCCATTCGGCCTTATCGCATATATATACAGTTCACATTCATCA
50649508 CAT
1 CAT
50649511 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
46 16 0.18
47 18 0.20
48 11 0.12
50 16 0.18
51 28 0.31
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTGCCATTCGGCCTTATCGCATATATATACAGTTCACATTCATCA
Found at i:50651533 original size:13 final size:13
Alignment explanation
Indices: 50651515--50651539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50651505 AACATGAGAA
50651515 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
50651528 CTTTTTTTTTTC
1 CTTTTTTTTTTC
50651540 CTTCATCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
CTTTTTTTTTTCT
Found at i:50662469 original size:48 final size:48
Alignment explanation
Indices: 50662417--50662532 Score: 189
Period size: 47 Copynumber: 2.4 Consensus size: 48
50662407 GTACCTATAC
50662417 CATGGCCCGAAGGCAAATCAAGGTAACTTATATCCGAAGTATTGATAT
1 CATGGCCCGAAGGCAAATCAAGGTAACTTATATCCGAAGTATTGATAT
* *
50662465 CATGGCCCGAA-GCAAATCAATGTAACTTATATCTGAAGTATTGATAT
1 CATGGCCCGAAGGCAAATCAAGGTAACTTATATCCGAAGTATTGATAT
* *
50662512 CATGGCCTGAAGCCAAATCAA
1 CATGGCCCGAAGGCAAATCAA
50662533 CCAATATTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
47 44 0.70
48 19 0.30
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (48 bp):
CATGGCCCGAAGGCAAATCAAGGTAACTTATATCCGAAGTATTGATAT
Found at i:50667557 original size:37 final size:38
Alignment explanation
Indices: 50667497--50667656 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 38
50667487 GCAGGCTATA
*
50667497 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
50667535 TGCTCGTATTA-ATCTGGGTTAAATCCTGAAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
50667572 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
** * * *
50667610 TGCTGGTATTATATTCAAGCTTAAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATA-TCCGGGTTAAA-TCCCGCAGGCTTCG
50667650 TGCTGGT
1 TGCTGGT
50667657 GACTGATTCG
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 33 0.32
38 44 0.42
39 8 0.08
40 19 0.18
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:50674751 original size:17 final size:17
Alignment explanation
Indices: 50674731--50674765 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50674721 GACATTCGGA
50674731 GTTAGTTATATGTCTTG
1 GTTAGTTATATGTCTTG
50674748 GTTAGTTATATGTCTTG
1 GTTAGTTATATGTCTTG
50674765 G
1 G
50674766 AGCTATAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.26, T:0.51
Consensus pattern (17 bp):
GTTAGTTATATGTCTTG
Found at i:50675684 original size:38 final size:38
Alignment explanation
Indices: 50675601--50675685 Score: 125
Period size: 38 Copynumber: 2.2 Consensus size: 38
50675591 ATATGCTAGA
* * * *
50675601 ATTATATCCGGGTTAAATCTCGCACGCTTCGTGCTGGT
1 ATTATATTCGGGTTAAATCCCACACGCTTAGTGCTGGT
*
50675639 ATTATATTCGGGTTAAATCCCACAGGCTTAGTGCTGGT
1 ATTATATTCGGGTTAAATCCCACACGCTTAGTGCTGGT
50675677 ATTATATTC
1 ATTATATTC
50675686 AAACTTAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (38 bp):
ATTATATTCGGGTTAAATCCCACACGCTTAGTGCTGGT
Found at i:50675713 original size:40 final size:38
Alignment explanation
Indices: 50675626--50675716 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 38
50675616 AATCTCGCAC
* ***
50675626 GCTTCGTGCTGGTATTATATTCGGGTTAAATCCCACAG
1 GCTTAGTGCTGGTATTATATTCAACTTAAATCCCACAG
50675664 GCTTAGTGCTGGTATTATATTCAAACTTAAAGTCCCACAG
1 GCTTAGTGCTGGTATTATATTC-AACTTAAA-TCCCACAG
* *
50675704 GTTTTGTGCTGGT
1 GCTTAGTGCTGGT
50675717 GACTGGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 21 0.47
39 5 0.11
40 19 0.42
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (38 bp):
GCTTAGTGCTGGTATTATATTCAACTTAAATCCCACAG
Found at i:50676866 original size:19 final size:20
Alignment explanation
Indices: 50676834--50676872 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50676824 TTTTTTCAGA
*
50676834 TAATTCTTT-AAAAAATAAT
1 TAATTATTTAAAAAAATAAT
*
50676853 TAATTATTTTAAAAAATAAT
1 TAATTATTTAAAAAAATAAT
50676873 ATTTATCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATTATTTAAAAAAATAAT
Found at i:50676883 original size:19 final size:20
Alignment explanation
Indices: 50676841--50676883 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
50676831 AGATAATTCT
*
50676841 TTAAAAAATAATTAATTATT
1 TTAAAAAATAATTAATTATC
*
50676861 TTAAAAAATAA-TATTTATC
1 TTAAAAAATAATTAATTATC
50676880 TTAA
1 TTAA
50676884 TTAAACATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAAAAATAATTAATTATC
Found at i:50686683 original size:29 final size:30
Alignment explanation
Indices: 50686636--50686695 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
50686626 AAAGTAAAAC
50686636 AAATAAAACAAAA-ACTTTTTTTTTGCGTT
1 AAATAAAACAAAATACTTTTTTTTTGCGTT
**
50686665 AAATAAAACAAAATTTTTTTTTTTTGCGTT
1 AAATAAAACAAAATACTTTTTTTTTGCGTT
50686695 A
1 A
50686696 TCATCTTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (30 bp):
AAATAAAACAAAATACTTTTTTTTTGCGTT
Found at i:50697483 original size:30 final size:30
Alignment explanation
Indices: 50697449--50697509 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50697439 TCCTTAACTC
50697449 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
50697479 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
50697509 A
1 A
50697510 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:50700558 original size:39 final size:40
Alignment explanation
Indices: 50700389--50700576 Score: 247
Period size: 40 Copynumber: 4.7 Consensus size: 40
50700379 TGGATGATAA
* *
50700389 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * **
50700429 CGAAGGCATTTGTACAAGTTACTATATCCGGGAAAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
50700469 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
50700509 CGAAGGCATTTGTGCGAGTTACTATAACTGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
50700548 CGAAGACATTTGAGCGAG-TAGCTATATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCC
50700577 AGTTAAATCC
Statistics
Matches: 131, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.02
39 27 0.21
40 101 0.77
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:50712718 original size:21 final size:22
Alignment explanation
Indices: 50712692--50712743 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
50712682 AACTAAAAAT
* *
50712692 AAAAATAAACA-TAAACATAAA
1 AAAAATAAACACTAAAAAGAAA
50712713 AAAAATAAA-ACTAAAAAGAAA
1 AAAAATAAACACTAAAAAGAAA
*
50712734 ATAAATAAAC
1 AAAAATAAAC
50712744 TCAATGGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.77, C:0.08, G:0.02, T:0.13
Consensus pattern (22 bp):
AAAAATAAACACTAAAAAGAAA
Found at i:50712736 original size:17 final size:16
Alignment explanation
Indices: 50712671--50712738 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
50712661 GAAGTTTAAG
*
50712671 AAAACAAAAAG-AACT
1 AAAACAAAAAGAAAAT
* *
50712686 AAAAATAAAAATAAACAT
1 -AAAACAAAAAGAAA-AT
50712704 -AAACATAAAA-AAAAT
1 AAAACA-AAAAGAAAAT
50712719 AAAACTAAAAAGAAAAT
1 AAAAC-AAAAAGAAAAT
50712736 AAA
1 AAA
50712739 TAAACTCAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 2 0.05
16 24 0.57
17 15 0.36
18 1 0.02
ACGTcount: A:0.78, C:0.07, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAACAAAAAGAAAAT
Found at i:50717140 original size:16 final size:15
Alignment explanation
Indices: 50717119--50717152 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
50717109 TCAATCATGC
*
50717119 AAAAATAATAATGAAG
1 AAAAATAAAAAT-AAG
50717135 AAAAATAAAAATAAG
1 AAAAATAAAAATAAG
50717150 AAA
1 AAA
50717153 CAAAATGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (15 bp):
AAAAATAAAAATAAG
Found at i:50717490 original size:14 final size:15
Alignment explanation
Indices: 50717473--50717504 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
50717463 AAGAATATTA
50717473 AAAAATAAAT-AAAT
1 AAAAATAAATAAAAT
50717487 AAAAATAAATAAAAT
1 AAAAATAAATAAAAT
50717502 AAA
1 AAA
50717505 TGAAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAAATAAATAAAAT
Found at i:50717492 original size:10 final size:10
Alignment explanation
Indices: 50717479--50717511 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
50717469 ATTAAAAAAT
50717479 AAATAAATAA
1 AAATAAATAA
50717489 AAATAAAT-A
1 AAATAAATAA
50717498 AAATAAATGAA
1 AAATAAAT-AA
50717509 AAA
1 AAA
50717512 GAAAGGGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 8 0.38
11 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (10 bp):
AAATAAATAA
Found at i:50722447 original size:38 final size:42
Alignment explanation
Indices: 50722348--50722502 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
50722338 TATGTGTTAT
* * * * *
50722348 CATGTAAGACCACGTTTGGGATGTTGGTATCGACT-TATGATTTA
1 CATGTAAGACCTCGTCTGGGACGTTGGCATCGA-TAT-TTA-TTA
* *
50722392 TATGTAAGACCACGTCTGGGACGTTGGCATC-ATA-TT-TT-
1 CATGTAAGACCTCGTCTGGGACGTTGGCATCGATATTTATTA
* *
50722430 CGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCTCGTCTGGGAC-GTTGGCATCGATATTT-ATTA
*
50722473 CATGTAAGACCTCGTCTGGGACATTGGCAT
1 CATGTAAGACCTCGTCTGGGACGTTGGCAT
50722503 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
38 25 0.27
39 6 0.07
40 2 0.02
41 1 0.01
42 3 0.03
43 27 0.30
44 27 0.30
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
CATGTAAGACCTCGTCTGGGACGTTGGCATCGATATTTATTA
Found at i:50727925 original size:51 final size:49
Alignment explanation
Indices: 50727870--50727987 Score: 157
Period size: 49 Copynumber: 2.4 Consensus size: 49
50727860 TGGTGGCATG
* *
50727870 CACATAGTACCAC-CTTTGTAGTCAAAGCTACCTTTTTCACAAAGTGGCCTT
1 CACATAGTACCACAC-TTGT-GACAAAGCTACC-TCTTCACAAAGTGGCCTT
* * *
50727921 CACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTTGTGACAAAGCTACCTCTTCACAAAGTGGCCTT
50727970 CACATAGTACCACACTTG
1 CACATAGTACCACACTTG
50727988 AGTCACTAGT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
49 34 0.56
50 9 0.15
51 17 0.28
52 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (49 bp):
CACATAGTACCACACTTGTGACAAAGCTACCTCTTCACAAAGTGGCCTT
Found at i:50730845 original size:46 final size:46
Alignment explanation
Indices: 50730782--50730930 Score: 138
Period size: 46 Copynumber: 3.1 Consensus size: 46
50730772 CACACCGTAT
**
50730782 CCATAGCCCAGCCATGGTCTTACACGAATCACATATCACACTGATG
1 CCATAGCCCAGATATGGTCTTACACGAATCACATATCACACTGATG
* * * * *
50730828 CCATATCCCGGATATGGTCTTATACGGAAGCACGTAATCACATATCTCTGATG
1 CCATAGCCCAGATATGGTCTTACAC-GAATCACAT-ATCAC--A---CTGATG
* *
50730881 CCATAGCCCAGCTATGGTCTTACAC-AGATCACATATCACATTGATG
1 CCATAGCCCAGATATGGTCTTACACGA-ATCACATATCACACTGATG
50730927 CCAT
1 CCAT
50730931 GGTCCAACCA
Statistics
Matches: 81, Mismatches: 14, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
46 29 0.36
47 7 0.09
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.07
52 5 0.06
53 27 0.33
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (46 bp):
CCATAGCCCAGATATGGTCTTACACGAATCACATATCACACTGATG
Found at i:50732837 original size:40 final size:40
Alignment explanation
Indices: 50732757--50732928 Score: 179
Period size: 40 Copynumber: 4.3 Consensus size: 40
50732747 GATAACCAGA
* * ** * *
50732757 CTAAGATCTGAAGGCATTCGTGTGAGTTGCTATATTCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
* * * * *
50732797 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATTTCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTG-CTATATCCGGG
*
50732837 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
* *
50732877 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
50732916 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
50732929 ATACTTGGTT
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 93 0.84
41 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
Found at i:50732890 original size:80 final size:79
Alignment explanation
Indices: 50732757--50732928 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 79
50732747 GATAACCAGA
* * * * * * *
50732757 CTAAGATCTGAAGGCATTCGTGTGAGTTGCTATATTCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
*
50732822 G-TGATTATTTCCGGG
66 GTTG-TTATATCC-GG
* *
50732837 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
1 CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
50732902 GTTGTTATATCCGG
66 GTTGTTATATCCGG
50732916 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
50732929 ATACTTGGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 64 0.80
81 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
GTTGTTATATCCGG
Found at i:50740745 original size:40 final size:39
Alignment explanation
Indices: 50740678--50740842 Score: 190
Period size: 40 Copynumber: 4.2 Consensus size: 39
50740668 GGACTAACAT
* * * *
50740678 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAG-TGTTATATCCGGGCTAAGAC
* * *
50740718 CCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGAC
1 CCGAAGGCATTTGTGCGAGTG-TTATATCCGGGCTAAGAC
* *
50740758 CCGAAGGCATTTGTGCGATTTGCTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCGA-GTGTTATATCCGGGCTAAGAC
50740798 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATC
1 CCGAAGGCATTTGTGCGAG-TGTTATATCCGGGCTAAGA-C
50740837 CCGAAG
1 CCGAAG
50740843 ATACTTGGGT
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 89 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTGTTATATCCGGGCTAAGAC
Found at i:50740824 original size:80 final size:79
Alignment explanation
Indices: 50740678--50740842 Score: 226
Period size: 80 Copynumber: 2.1 Consensus size: 79
50740668 GGACTAACAT
* * *
50740678 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGATTA
1 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTA
*
50740743 TATCTGGGCTAAGA-C
66 TATC-CGGCTAA-ATC
* * *
50740758 CCGAAGGCATTTGTGCGATTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATT
50740822 ATATCCGGCTAAATC
65 ATATCCGGCTAAATC
50740837 CCGAAG
1 CCGAAG
50740843 ATACTTGGGT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 13 0.17
80 60 0.79
81 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTA
TATCCGGCTAAATC
Found at i:50743227 original size:23 final size:22
Alignment explanation
Indices: 50743160--50743245 Score: 97
Period size: 21 Copynumber: 4.0 Consensus size: 22
50743150 CCTGATCAGT
*
50743160 ATACGACACATAA-GTGCCTGA
1 ATACGACACACAAGGTGCCTGA
* *
50743181 A-ACAACACACGAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
50743201 ATACGACACACAAGGTGCCTGAA
1 ATACGACACACAAGGTGCCTG-A
* *
50743224 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAGGTGCCTGA
50743246 TCAGTATAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.17
21 25 0.46
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTGA
Found at i:50743242 original size:44 final size:41
Alignment explanation
Indices: 50743160--50743246 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
50743150 CCTGATCAGT
* * *
50743160 ATACGACACATAAGTGCCTGAAACAACACACGAGGTGCCTG
1 ATACGACACACAAGTGCCTGAAACAACACACAAAGTGCCTG
* *
50743201 ATACGACACACAAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 ATACGACACACAA-GTGCCTG-AA-ACAACACACAAAGTGCCTG
50743245 AT
1 AT
50743247 CAGTATAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 12 0.32
42 7 0.18
43 2 0.05
44 17 0.45
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (41 bp):
ATACGACACACAAGTGCCTGAAACAACACACAAAGTGCCTG
Found at i:50743505 original size:23 final size:23
Alignment explanation
Indices: 50743436--50743533 Score: 70
Period size: 28 Copynumber: 3.8 Consensus size: 23
50743426 AAATGTCCAA
* *
50743436 CCAAAACACACCAGTATAATCTT
1 CCAAAACACACCAGAATAATCCT
50743459 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----A-ATAATCCT
*
50743487 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----A-ATAATCC-T
50743516 CCAAAACACACCAGAATA
1 CCAAAACACACCAGAATA
50743534 GCACAAAGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
23 14 0.22
24 3 0.05
25 1 0.02
28 31 0.49
29 14 0.22
ACGTcount: A:0.47, C:0.32, G:0.04, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGAATAATCCT
Found at i:50743532 original size:29 final size:28
Alignment explanation
Indices: 50743450--50743533 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
50743440 AACACACCAG
* * *
50743450 TATAATCTTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
50743478 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
50743506 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
50743534 GCACAAAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 32 0.64
29 18 0.36
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:50749918 original size:33 final size:33
Alignment explanation
Indices: 50749867--50749933 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
50749857 GAATATGCAA
* *
50749867 AACAGTCTGGGCCGTAGCCTTATTCAGTAACAG
1 AACAGTCTGGGCCGTAGCCCTATACAGTAACAG
** *
50749900 AACAGTCTGGGCTTTAGCCCTATACAGTAGCAG
1 AACAGTCTGGGCCGTAGCCCTATACAGTAACAG
50749933 A
1 A
50749934 GTGGGCCCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (33 bp):
AACAGTCTGGGCCGTAGCCCTATACAGTAACAG
Found at i:50750505 original size:17 final size:17
Alignment explanation
Indices: 50750483--50750516 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50750473 ACCTGTGTGG
50750483 GGCCCACAAGCCCATTT
1 GGCCCACAAGCCCATTT
**
50750500 GGCCCACCGGCCCATTT
1 GGCCCACAAGCCCATTT
50750517 CGACCCATCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.44, G:0.21, T:0.18
Consensus pattern (17 bp):
GGCCCACAAGCCCATTT
Found at i:50752851 original size:11 final size:11
Alignment explanation
Indices: 50752835--50752860 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50752825 AAATATTGTT
50752835 GTTGGGGTGTA
1 GTTGGGGTGTA
50752846 GTTGGGGTGTA
1 GTTGGGGTGTA
50752857 GTTG
1 GTTG
50752861 TTGGAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.54, T:0.38
Consensus pattern (11 bp):
GTTGGGGTGTA
Found at i:50758781 original size:46 final size:45
Alignment explanation
Indices: 50758612--50758782 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
50758602 AACCCGCCCC
* * * *
50758612 TAAGTGAAATCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCATCCA
* * *
50758658 TAATTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
***
50758704 TCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
*
50758751 TAAGTGAACTCGGACTCAACTCAACAAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
50758783 AATGCCCAAA
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 58 0.57
47 33 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:50760810 original size:22 final size:20
Alignment explanation
Indices: 50760768--50760818 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
50760758 GTGTAATTCT
* *
50760768 ATCAAAAATAACCAAATTTA
1 ATCAAAATTAACCAAAATTA
50760788 ATCAAAATTAACTACAAAATTA
1 ATCAAAATTAAC--CAAAATTA
*
50760810 ATTAAAATT
1 ATCAAAATT
50760819 CATAATGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (20 bp):
ATCAAAATTAACCAAAATTA
Found at i:50768721 original size:68 final size:64
Alignment explanation
Indices: 50768611--50768863 Score: 230
Period size: 68 Copynumber: 3.9 Consensus size: 64
50768601 ATACAAATAG
** * * * *
50768611 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA
50768675 TTA
63 -TA
* *
50768678 TGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTACGAGAT
50768742 A
64 A
* * *
50768743 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGCTACGA
50768806 GATA
61 GATA
* * *
50768810 AAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
50768864 CGAACTATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 34 0.22
68 49 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:50775458 original size:19 final size:20
Alignment explanation
Indices: 50775414--50775458 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
50775404 ATAATGTTCA
*
50775414 TATTTTTAACATAATTTAAT
1 TATTTTTAACATAATTTAAG
50775434 TA-TTTTATA-AT-ATTTAAG
1 TATTTTTA-ACATAATTTAAG
50775452 TATTTTT
1 TATTTTT
50775459 CGATAAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 8 0.36
19 11 0.50
20 3 0.14
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TATTTTTAACATAATTTAAG
Found at i:50779483 original size:16 final size:16
Alignment explanation
Indices: 50779444--50779476 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50779434 TTTTGATGAA
*
50779444 TATTTTGAGTTGTGCC
1 TATTTTGACTTGTGCC
50779460 TATTTTGACTTGTGCC
1 TATTTTGACTTGTGCC
50779476 T
1 T
50779477 TTGTTGATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.15, G:0.21, T:0.52
Consensus pattern (16 bp):
TATTTTGACTTGTGCC
Found at i:50786033 original size:14 final size:14
Alignment explanation
Indices: 50786014--50786044 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
50786004 GACATAAAGC
50786014 ATACATGTTATCAT
1 ATACATGTTATCAT
50786028 ATACATGTTATCAT
1 ATACATGTTATCAT
50786042 ATA
1 ATA
50786045 TCGTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (14 bp):
ATACATGTTATCAT
Found at i:50786621 original size:46 final size:46
Alignment explanation
Indices: 50786554--50786682 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
50786544 TGTAACCCGC
* ** * * *
50786554 CCATAAGCGAACTCAAACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
50786600 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50786646 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50786683 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50795624 original size:27 final size:26
Alignment explanation
Indices: 50795582--50795718 Score: 118
Period size: 27 Copynumber: 5.1 Consensus size: 26
50795572 TCATTAAGAC
50795582 CCCTGACTTGTAAAATTACTGAAATA
1 CCCTGACTTGTAAAATTACTGAAATA
* * *
50795608 TCCCTGATTTGTGAAATTA-TCAAAATA
1 -CCCTGACTTGTAAAATTACT-GAAATA
* *
50795635 CTCCCGACTTGTAAAATTTCTGAAATA
1 C-CCTGACTTGTAAAATTACTGAAATA
* *
50795662 CTCTCGATTTGTAAAATTACTGAAATA
1 CCCT-GACTTGTAAAATTACTGAAATA
*
50795689 CCCTTA-TAGTGTAAAATTA-TCGAAATA
1 CCCTGACT--TGTAAAATTACT-GAAATA
50795716 CCC
1 CCC
50795719 CTGCAGGGTA
Statistics
Matches: 89, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 5 0.06
27 82 0.92
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (26 bp):
CCCTGACTTGTAAAATTACTGAAATA
Found at i:50795729 original size:27 final size:27
Alignment explanation
Indices: 50795672--50795737 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
50795662 CTCTCGATTT
* * *
50795672 GTAAAATTACTGAAATACCCTTATAGT
1 GTAAAATTACTGAAATACCCCTACAGG
*
50795699 GTAAAATTA-TCGAAATACCCCTGCAGG
1 GTAAAATTACT-GAAATACCCCTACAGG
*
50795726 GTAAAATGACTG
1 GTAAAATTACTG
50795738 TTTTGCCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCCTACAGG
Found at i:50810411 original size:42 final size:43
Alignment explanation
Indices: 50810312--50810413 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
50810302 AATGCCGACG
* * *
50810312 TCCCAAACGTGGTCTTACATGTAATTCAATATCGATGCCTCTA
1 TCCCAAACATGGTCTTACATGAAATTCAATATCGATGCCTATA
*
50810355 TCCCAAACAGGGTCTTACATGAAATT-AGATA-CGATG-CTGATA
1 TCCCAAACATGGTCTTACATGAAATTCA-ATATCGATGCCT-ATA
*
50810397 TCCCAGACATGGTCTTA
1 TCCCAAACATGGTCTTA
50810414 TACATAAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.04
42 23 0.45
43 26 0.51
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACATGAAATTCAATATCGATGCCTATA
Found at i:50818545 original size:39 final size:40
Alignment explanation
Indices: 50818487--50818736 Score: 179
Period size: 40 Copynumber: 6.3 Consensus size: 40
50818477 ACCCAATTAT
* * *
50818487 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAATCACTAGCACAAATGC
* **
50818525 CTTCGGGTCTTAGTCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
* * * *
50818565 CTTCAGGACTTAGCCCGGATATAATAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
* ** * * *
50818605 CTTCGGGGCTTAGCCCGGA-ATTTGTAACTCGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATA-TAATCACTAGCACAAATGC
* * * * * *
50818645 CTTCGGGACTTAGCCC-GAAATTAGTAACTCGCACCAATGC
1 CTTCGGGTCTTAGCCCGGATA-TAATCACTAGCACAAATGC
* * * *
50818685 CTTCGGGACTTAGCCCAGA-ATTTATCACTAGCACAAATGT
1 CTTCGGGTCTTAGCCCGGATA-TAATCACTAGCACAAATGC
*
50818725 CTTCGGGACTTA
1 CTTCGGGTCTTA
50818737 ACCCCGTTAG
Statistics
Matches: 178, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.06
39 19 0.11
40 145 0.81
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:50818583 original size:40 final size:40
Alignment explanation
Indices: 50818523--50818736 Score: 227
Period size: 40 Copynumber: 5.3 Consensus size: 40
50818513 CTCGCACAAG
* * * *
50818523 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * *
50818563 GCCTTCAGGACTTAGCCCGG-ATATAATAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * * *
50818603 GCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGCACAAAA
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* * *
50818643 GCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACCAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
50818683 GCCTTCGGGACTTAGCCCAGAATTTA-TCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAA-TTAGTAACTAGCACAAAT
*
50818723 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
50818737 ACCCCGTTAG
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 143 0.97
41 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
Found at i:50818639 original size:80 final size:79
Alignment explanation
Indices: 50818487--50818736 Score: 281
Period size: 80 Copynumber: 3.2 Consensus size: 79
50818477 ACCCAATTAT
* ** * * * *
50818487 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGTCCGG-ATATGGT
1 CTTCGGGACTTAGCCCGGATATAATAACTCGCACAATGCCTTCGGGACTTAGCCCGGAAT-TTGT
50818550 CACTAGCACAAATGC
65 CACTAGCACAAATGC
* * *
50818565 CTTCAGGACTTAGCCCGGATATAATAACTTGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGT
1 CTTCGGGACTTAGCCCGGATATAATAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGAATTTGT
* * *
50818630 AACTCGCACAAAAGC
65 CACTAGCACAAATGC
* * * *
50818645 CTTCGGGACTTAGCCC-GAAATTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCAGAATTTA
1 CTTCGGGACTTAGCCCGGATA-TAATAACTCGCA-CAATGCCTTCGGGACTTAGCCCGGAATTTG
*
50818709 TCACTAGCACAAATGT
64 TCACTAGCACAAATGC
50818725 CTTCGGGACTTA
1 CTTCGGGACTTA
50818737 ACCCCGTTAG
Statistics
Matches: 144, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 11 0.08
79 20 0.14
80 110 0.76
81 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAATAACTCGCACAATGCCTTCGGGACTTAGCCCGGAATTTGTC
ACTAGCACAAATGC
Found at i:50818698 original size:120 final size:119
Alignment explanation
Indices: 50818512--50818736 Score: 274
Period size: 120 Copynumber: 1.9 Consensus size: 119
50818502 GGATATAACC
* * * * * *
50818512 ACTCGCACAAGGCCTTCGGGTCTTAGTCCGGATATGGTCACTAGCACAAATGCCTTCAGGACTTA
1 ACTCGCACAAAGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCAGGACTTA
* * *
50818577 GCCC-GGATATAATAACTTGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGTA
66 GCCCAGAAT-TAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
* * *
50818631 ACTCGCACAAAAGCCTTCGGGACTTAGCCCGAA-ATTAGTAACTCGCACCAATGCCTTCGGGACT
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGAATA-TAGTAACTAGCACAAATGCCTTCAGGACT
* * *
50818695 TAGCCCAGAATTTATCACTAGCACAAATGTCTTCGGGACTTA
64 TAGCCCAGAATTAATAACTAGCACAAATGCCTTCGGGACTTA
50818737 ACCCCGTTAG
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
119 9 0.10
120 76 0.86
121 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (119 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCAGGACTTA
GCCCAGAATTAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
Found at i:50826722 original size:40 final size:40
Alignment explanation
Indices: 50826664--50826928 Score: 304
Period size: 40 Copynumber: 6.7 Consensus size: 40
50826654 GGATATAACC
* * * * *
50826664 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCC-GAATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TTGTA
* * **
50826703 ACTAGCACAAATGCCTTCGGGAC-TATTCCCGG-ATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTA-GCCCGGAAT-TTGTA
*
50826743 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
* * *
50826783 ACTCGCACAAAAGCCTTCAGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
*
50826823 ACTCGCACAACTGCCTTCGGGACTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
* * *
50826863 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTTATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
* *
50826903 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
50826929 ACCCCGTTAG
Statistics
Matches: 194, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
39 9 0.05
40 180 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
Found at i:50829303 original size:42 final size:42
Alignment explanation
Indices: 50829257--50829357 Score: 107
Period size: 43 Copynumber: 2.4 Consensus size: 42
50829247 GCCTCTTTCT
* *
50829257 CAGACAGGGTCTTACACG-AAA-TCAGATACGATGCCAATGTCC
1 CAGACACGGTCTTACACGTAAACTCA-AT-CGAGGCCAATGTCC
* * **
50829299 CAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCC
1 CAGACACGGTCTTACACGTAAA-CTCAATCGAGGCCAATGTCC
50829342 CAGACACGGTCTTACA
1 CAGACACGGTCTTACA
50829358 TGATGCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
42 16 0.33
43 28 0.57
44 2 0.04
45 3 0.06
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (42 bp):
CAGACACGGTCTTACACGTAAACTCAATCGAGGCCAATGTCC
Found at i:50835706 original size:19 final size:19
Alignment explanation
Indices: 50835678--50835720 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
50835668 ATGAAATTTT
*
50835678 AATTAGTATTATGAGATAA
1 AATTAGTATTATGAGAAAA
* *
50835697 AATTATTATTATTAGAAAA
1 AATTAGTATTATGAGAAAA
50835716 AATTA
1 AATTA
50835721 CTATATGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (19 bp):
AATTAGTATTATGAGAAAA
Found at i:50844598 original size:29 final size:27
Alignment explanation
Indices: 50844550--50844619 Score: 63
Period size: 30 Copynumber: 2.4 Consensus size: 27
50844540 ATGGAAATAT
50844550 ATTATAAATATTATATAATTATT-T-TATAA
1 ATTATAAATA--ATATAATT-TTATGT-TAA
50844579 ATTATAAATAATAGTGAATTTTCATGTTAA
1 ATTATAAATAATA-T-AATTTT-ATGTTAA
50844609 ATTATAAATAA
1 ATTATAAATAA
50844620 AAGTAAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
27 3 0.08
28 3 0.08
29 14 0.39
30 15 0.42
31 1 0.03
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATAAATAATATAATTTTATGTTAA
Found at i:50850942 original size:29 final size:29
Alignment explanation
Indices: 50850900--50850956 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
50850890 TTTGAGTGAT
*
50850900 TAAATGGCTTAATGAATAAAGATAAATGA
1 TAAATGGCTTAATGAACAAAGATAAATGA
*
50850929 TAAATGGCTTAATGAACAAAGGTAAATG
1 TAAATGGCTTAATGAACAAAGATAAATG
50850957 GACTTAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.49, C:0.05, G:0.19, T:0.26
Consensus pattern (29 bp):
TAAATGGCTTAATGAACAAAGATAAATGA
Found at i:50852775 original size:20 final size:18
Alignment explanation
Indices: 50852733--50852776 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
50852723 GTGTTTAATC
*
50852733 GAAAACCTTGTTTTCATT
1 GAAAACCTTGTTATCATT
*
50852751 GAAAACCTTAGTTATCTTAT
1 GAAAACCTT-GTTATCAT-T
50852771 GAAAAC
1 GAAAAC
50852777 ACTCTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 6 0.27
20 7 0.32
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
GAAAACCTTGTTATCATT
Found at i:50855444 original size:27 final size:27
Alignment explanation
Indices: 50855404--50855515 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
50855394 AGGAAGCGTC
*
50855404 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
50855431 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
50855458 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* ** *
50855486 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
50855512 CTGG
1 CTGG
50855516 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:50855510 original size:54 final size:54
Alignment explanation
Indices: 50855404--50855515 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
50855394 AGGAAGCGTC
* * *
50855404 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * *
50855458 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
50855512 CTGG
1 CTGG
50855516 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:50856805 original size:29 final size:28
Alignment explanation
Indices: 50856740--50856873 Score: 139
Period size: 28 Copynumber: 4.7 Consensus size: 28
50856730 ACATACATGC
*
50856740 ATATGGCCCA-CTAGGCCCAATCTCATTT
1 ATATGGCCCATCCA-GCCCAATCTCATTT
*
50856768 ATATGGCCCATCCATCCCAAT-TCATGTT
1 ATATGGCCCATCCAGCCCAATCTCAT-TT
* * *
50856796 CATATGGCCCATCAAGCCCAATTCACATTC
1 -ATATGGCCCATCCAGCCCAA-TCTCATTT
* *
50856826 ATATGGCGCAT-TAGGCCCAATCTCATTT
1 ATATGGCCCATCCA-GCCCAATCTCATTT
50856854 ATATGGCCCATCCAGCCCAA
1 ATATGGCCCATCCAGCCCAA
50856874 GTCACATTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
27 4 0.05
28 41 0.47
29 37 0.43
30 2 0.02
31 3 0.03
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATCCAGCCCAATCTCATTT
Found at i:50856815 original size:57 final size:58
Alignment explanation
Indices: 50856739--50856885 Score: 153
Period size: 57 Copynumber: 2.6 Consensus size: 58
50856729 TACATACATG
* * * *
50856739 CATATGGCCCA-CTAGGCCCAA-TCTCATTTATATGGCCCATCCA-TCCCAAT-TCATGTT
1 CATATGGCCCATC-AAGCCCAATTCACATTCATATGGCCCAT-CAGGCCCAATCTCAT-TT
* *
50856796 CATATGGCCCATCAAGCCCAATTCACATTCATATGGCGCATTAGGCCCAATCTCATTT
1 CATATGGCCCATCAAGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATTT
* *
50856854 -ATATGGCCCATCCAGCCCAAGTCACATT-ATAT
1 CATATGGCCCATCAAGCCCAATTCACATTCATAT
50856886 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
56 4 0.05
57 45 0.58
58 25 0.32
59 4 0.05
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (58 bp):
CATATGGCCCATCAAGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATTT
Found at i:50860309 original size:82 final size:81
Alignment explanation
Indices: 50860193--50860348 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50860183 AAATTGTACA
* * * *
50860193 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
50860257 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50860274 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
50860339 TGCGAGTTGA
65 TGCGAATTGA
50860349 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50860316 original size:55 final size:52
Alignment explanation
Indices: 50860192--50860345 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
50860182 TAAATTGTAC
* *
50860192 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
50860245 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
50860300 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
50860346 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:50860350 original size:27 final size:27
Alignment explanation
Indices: 50860193--50860348 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
50860183 AAATTGTACA
*
50860193 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
50860220 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
50860247 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
50860274 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
50860302 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
50860329 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
50860349 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:50860359 original size:27 final size:27
Alignment explanation
Indices: 50860185--50860369 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
50860175 GCGGGATTAA
*
50860185 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
50860212 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
50860239 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
50860266 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
50860294 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
50860321 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
50860348 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
50860370 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:50860360 original size:82 final size:81
Alignment explanation
Indices: 50860185--50860369 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
50860175 GCGGGATTAA
* * * *
50860185 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
50860250 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
50860266 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
50860330 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
50860348 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
50860370 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Done.