Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 149 of 295
Found at i:50868421 original size:82 final size:81
Alignment explanation
Indices: 50868305--50868460 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50868295 AAATTGTACA
* * * *
50868305 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
50868369 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50868386 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
50868451 TGCGAGTTGA
65 TGCGAATTGA
50868461 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50868428 original size:55 final size:52
Alignment explanation
Indices: 50868304--50868457 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
50868294 TAAATTGTAC
* *
50868304 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
50868357 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
50868412 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
50868458 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:50868462 original size:27 final size:27
Alignment explanation
Indices: 50868305--50868460 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
50868295 AAATTGTACA
*
50868305 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
50868332 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
50868359 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
50868386 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
50868414 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
50868441 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
50868461 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:50868471 original size:27 final size:27
Alignment explanation
Indices: 50868297--50868481 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
50868287 GCGGGATTAA
*
50868297 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
50868324 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
50868351 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
50868378 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
50868406 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
50868433 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
50868460 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
50868482 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:50868472 original size:82 final size:81
Alignment explanation
Indices: 50868297--50868481 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
50868287 GCGGGATTAA
* * * *
50868297 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
50868362 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
50868378 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
50868442 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
50868460 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
50868482 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:50870542 original size:16 final size:17
Alignment explanation
Indices: 50870511--50870543 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50870501 CATAAGTATA
50870511 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
50870528 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
50870544 GCTCATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:50870904 original size:46 final size:46
Alignment explanation
Indices: 50870819--50871143 Score: 427
Period size: 46 Copynumber: 7.0 Consensus size: 46
50870809 TTATCTTTGA
* * * * * *
50870819 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
50870865 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
50870912 CATGTTGCCATGGTATCTTTCAACCACGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
50870958 CACGCTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
50871004 CATGTTGCCATGGTATATTTCAACCATGGTCTTACACATTTCATAG
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
50871050 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
50871096 AAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
50871142 CA
1 CA
50871144 GAGAGCACAC
Statistics
Matches: 250, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 211 0.84
47 39 0.16
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:50872045 original size:46 final size:46
Alignment explanation
Indices: 50871992--50872156 Score: 258
Period size: 46 Copynumber: 3.6 Consensus size: 46
50871982 AGTGTGCTCT
50871992 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
50872038 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
50872084 ATGATATGAAATGTGTAGGACCATGGTTGAAAGTTACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
50872130 GTGACATGAAATGAATAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGT
50872157 GTCATAACGT
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 110 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:50872281 original size:46 final size:46
Alignment explanation
Indices: 50872196--50872428 Score: 252
Period size: 46 Copynumber: 5.0 Consensus size: 46
50872186 TTATCTTTGA
* * * * * *
50872196 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * *
50872242 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * * *
50872289 CAGGTTGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * * * * * *
50872335 AACGCTACCATGATATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
50872381 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
50872427 CA
1 CA
50872429 GAGAGCACAC
Statistics
Matches: 157, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
46 120 0.76
47 37 0.24
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:50872360 original size:93 final size:92
Alignment explanation
Indices: 50872201--50872424 Score: 270
Period size: 93 Copynumber: 2.4 Consensus size: 92
50872191 TTTGACATGA
* * * * * * * *
50872201 TGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCA-TTTCATGTAACGCTACCATGATATCTTTCAA
* * ** *
50872265 CCATGTTCTTATTCATTTTCCTATCAGGT
65 CCATGGTCCTACACA-TTTCATATCAGGT
*
50872294 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCATGTAACGCTACCATGATATCTTTCAAC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATGTAACGCTACCATGATATCTTTCAAC
*
50872359 CATGGTCCTACACATTTCATATCATGT
66 CATGGTCCTACACATTTCATATCAGGT
* *
50872386 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCAT
50872425 ATCAGAGAGC
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
92 51 0.46
93 61 0.54
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (92 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATGTAACGCTACCATGATATCTTTCAAC
CATGGTCCTACACATTTCATATCAGGT
Found at i:50873277 original size:46 final size:46
Alignment explanation
Indices: 50873224--50873388 Score: 249
Period size: 46 Copynumber: 3.6 Consensus size: 46
50873214 AGTGTGCTCT
50873224 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
50873270 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
50873316 ATGATATGAAATGTGTAGGACCATGGTTGAAAGTTACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
50873362 GTGACATGAAATGAATAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGT
50873389 GTCATAACGT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 108 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:50873513 original size:46 final size:46
Alignment explanation
Indices: 50873428--50873660 Score: 252
Period size: 46 Copynumber: 5.0 Consensus size: 46
50873418 TTATCTTTGA
* * * * * * *
50873428 CATGATGCCATAGTGTCTTTCAACTATGATATTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * *
50873474 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * * *
50873521 CAGGTTGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * * * * *
50873567 AATGCTACCATGATATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
50873613 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
50873659 CA
1 CA
50873661 GAGAGCACAC
Statistics
Matches: 158, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
46 121 0.77
47 37 0.23
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:50873592 original size:93 final size:92
Alignment explanation
Indices: 50873433--50873656 Score: 270
Period size: 93 Copynumber: 2.4 Consensus size: 92
50873423 TTTGACATGA
* * * * * * * *
50873433 TGCCATAGTGTCTTTCAACTATGATATTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCA-TTTCATGTAATGCTACCATGATATCTTTCAA
* * ** *
50873497 CCATGTTCTTATTCATTTTCCTATCAGGT
65 CCATGGTCCTACACA-TTTCATATCAGGT
*
50873526 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCATGTAATGCTACCATGATATCTTTCAAC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATGTAATGCTACCATGATATCTTTCAAC
*
50873591 CATGGTCCTACACATTTCATATCATGT
66 CATGGTCCTACACATTTCATATCAGGT
* *
50873618 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCAT
50873657 ATCAGAGAGC
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
92 51 0.46
93 61 0.54
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (92 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATGTAATGCTACCATGATATCTTTCAAC
CATGGTCCTACACATTTCATATCAGGT
Found at i:50874508 original size:46 final size:46
Alignment explanation
Indices: 50874456--50874619 Score: 265
Period size: 46 Copynumber: 3.6 Consensus size: 46
50874446 GTGTGCTCTC
*
50874456 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
50874502 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
50874548 TGATATGAAATGTGTAGGACCATGGTTGAAAGTTACCATGGCAGCA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* **
50874594 TGACATGAAATGAATAAGACCATGGT
1 TGATATGAAATGTGTAAGACCATGGT
50874620 GTCATAACGT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 110 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.24
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:50874724 original size:46 final size:47
Alignment explanation
Indices: 50874659--50874891 Score: 267
Period size: 46 Copynumber: 5.0 Consensus size: 47
50874649 TTATCTTTGA
* * * * * *
50874659 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * *
50874705 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* *
50874752 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * * * * * *
50874798 AACGCTACCATGATATCTTTCAACCATGGTCCTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
*
50874844 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
50874890 CA
1 CA
50874892 GAGAGCACAC
Statistics
Matches: 160, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
46 121 0.76
47 39 0.24
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
Found at i:50874732 original size:24 final size:24
Alignment explanation
Indices: 50874705--50874779 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
50874695 CATTTTCTGT
50874705 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
* * *
50874729 CATGTT-CTTAT--TCAT-TTTCCTAT
1 CATGTTGC-CATGGT-ATCTTT-CAAC
50874752 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
50874776 CATG
1 CATG
50874780 GTCTTATTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 4 0.11
23 13 0.34
24 17 0.45
25 4 0.11
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (24 bp):
CATGTTGCCATGGTATCTTTCAAC
Found at i:50874809 original size:93 final size:92
Alignment explanation
Indices: 50874659--50874887 Score: 280
Period size: 93 Copynumber: 2.5 Consensus size: 92
50874649 TTATCTTTGA
* * * * * * * * * *
50874659 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTAACGCTACCATGATATCT
* * ** *
50874723 TTCAACCATGTTCTTATTCATTTTCCTAT
65 TTCAACCATGGTCCTACACA-TTTCATAT
*
50874752 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTAACGCTACCATGATATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTAACGCTACCATGATATCTT
50874817 TCAACCATGGTCCTACACATTTCATAT
66 TCAACCATGGTCCTACACATTTCATAT
*
50874844 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
50874888 ATCAGAGAGC
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
92 53 0.45
93 64 0.55
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTAACGCTACCATGATATCTT
TCAACCATGGTCCTACACATTTCATAT
Found at i:50875807 original size:46 final size:46
Alignment explanation
Indices: 50875740--50875904 Score: 231
Period size: 46 Copynumber: 3.6 Consensus size: 46
50875730 AGTGTGCTCT
*
50875740 CTGATATGAAATGTGTAAGACCATGGCTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
50875786 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
50875832 ATGATATGAAATGTGTAGGACCATTGTTGAAAGTTACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
50875878 GTGACATGAAATGAATAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGT
50875905 GTCATAACGT
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 105 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:50876108 original size:93 final size:93
Alignment explanation
Indices: 50875944--50876116 Score: 249
Period size: 93 Copynumber: 1.9 Consensus size: 93
50875934 TTATCTTTGA
* * * * *
50875944 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTACTACACATTTTCTATCATGTTGCCATGGTATCTT
*
50876009 TCAACCATGTTCTTATTCATTTTCCTAT
66 TCAACCATGGTCTTATTCATTTTCCTAT
* * *
50876037 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACA-TTTCATATCATGTTGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATGGTACTACACATTTTC-TATCATGTTGCCATGGTATCT
50876101 TTCAACCATGGTCTTA
65 TTCAACCATGGTCTTA
50876117 CACATTTCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (93 bp):
CATGATGCCATAGTATCTTTCAACCATGGTACTACACATTTTCTATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATTCATTTTCCTAT
Found at i:50876124 original size:46 final size:47
Alignment explanation
Indices: 50875944--50876130 Score: 245
Period size: 46 Copynumber: 4.0 Consensus size: 47
50875934 TTATCTTTGA
* * * * * * *
50875944 CATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
* ** *
50875990 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
*
50876037 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
50876083 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
50876129 CA
1 CA
50876131 GAGAGCACAC
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 90 0.71
47 36 0.29
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
Found at i:50878348 original size:17 final size:17
Alignment explanation
Indices: 50878303--50878348 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
50878293 AAATAAAATC
50878303 TTATAATATAAT-TATT
1 TTATAATATAATATATT
*
50878319 TAATTAATA-AATATATT
1 TTA-TAATATAATATATT
50878336 TTATAATATAATA
1 TTATAATATAATA
50878349 AATATCTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTATAATATAATATATT
Found at i:50880733 original size:16 final size:17
Alignment explanation
Indices: 50880702--50880734 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50880692 CATAAGTATA
50880702 TATATAAATCATTTCAT
1 TATATAAATCATTTCAT
*
50880719 TATATCAAT-ATTTCAT
1 TATATAAATCATTTCAT
50880735 GCTCCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATAAATCATTTCAT
Found at i:50881286 original size:46 final size:47
Alignment explanation
Indices: 50881015--50881292 Score: 343
Period size: 46 Copynumber: 6.0 Consensus size: 47
50881005 TTATCTTTGA
* * * * * *
50881015 CATGATGCCATAGTGTCTTTCAA-TATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
* ** ***
50881060 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
* **
50881107 CATGTTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
*
50881153 CATGTTGCCATGGTATCTTTCAACCATGGTCATACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
*
50881199 CATGTTTCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
* *
50881245 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
50881291 CA
1 CA
50881293 AAGAGCACAC
Statistics
Matches: 210, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
45 24 0.11
46 143 0.68
47 43 0.20
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
Found at i:50883464 original size:15 final size:16
Alignment explanation
Indices: 50883424--50883492 Score: 63
Period size: 15 Copynumber: 4.3 Consensus size: 16
50883414 TGTCATTATT
*
50883424 TAATATATTTATCATA
1 TAATATATTTATAATA
*
50883440 TAAAAT-TTTATAATA
1 TAATATATTTATAATA
50883455 TAAT-TATTTAATTAATA
1 TAATATATTT-A-TAATA
*
50883472 -AATATCTTTTATAATA
1 TAATAT-ATTTATAATA
50883488 TAATA
1 TAATA
50883493 AATATGTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
14 1 0.02
15 14 0.33
16 14 0.33
17 11 0.26
18 3 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATATATTTATAATA
Found at i:50883555 original size:24 final size:24
Alignment explanation
Indices: 50883528--50883578 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
50883518 GTTTTACAAA
*
50883528 TGTATGTATT-TTTATCTATACACT
1 TGTATATATTATTTA-CTATACACT
* *
50883552 TGTATATTTTATTTACTATACATT
1 TGTATATATTATTTACTATACACT
50883576 TGT
1 TGT
50883579 CTTTGTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57
Consensus pattern (24 bp):
TGTATATATTATTTACTATACACT
Found at i:50883677 original size:29 final size:27
Alignment explanation
Indices: 50883606--50883677 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 27
50883596 TATCATATAA
* *
50883606 ATATCTTATAATATAATTATAATAAATT
1 ATATTTTATAAT-TTATTATAATAAATT
*
50883634 A-ATTTAATATCATTTATTACTAATAAATAT
1 ATATTT--TATAATTTATTA-TAATAAAT-T
50883664 ATATTTTATAATTT
1 ATATTTTATAATTT
50883678 GAAATCTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
27 3 0.09
28 6 0.17
29 20 0.57
30 2 0.06
31 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (27 bp):
ATATTTTATAATTTATTATAATAAATT
Found at i:50889112 original size:48 final size:48
Alignment explanation
Indices: 50888962--50889280 Score: 277
Period size: 48 Copynumber: 6.6 Consensus size: 48
50888952 GGTAAAATGT
* * *
50888962 CGATACCATGTCCCGGACATGGTCTTACACTGGCTCTCATACATCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA-AT-GTG-GC
* * * * * ** *
50889012 CGACGCCATGTCCCATACATGGTCTTACACTGACACATATAACAAT-AC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAA-TGTGGC
* * * *
50889060 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGTGGC
* * *
50889108 CGATGCCATG-CCTTAGACATGGTTTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCC-CAGACATGGTCTTACACTGGCTCACATAATGTGGC
* * * * ****
50889156 TGATGCCATGTCCCAGACATGGGCTTACACTAGCACACAT-ATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GTGGC
* *
50889204 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGTGGC
* * *
50889252 CAATGCCGTGTCCGAGACATGGTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
50889281 TTAGCACACA
Statistics
Matches: 208, Mismatches: 54, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
47 4 0.02
48 166 0.80
49 5 0.02
50 33 0.16
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGTGGC
Found at i:50889230 original size:144 final size:145
Alignment explanation
Indices: 50888977--50889280 Score: 393
Period size: 144 Copynumber: 2.1 Consensus size: 145
50888967 CCATGTCCCG
* *
50888977 GACATGGTCTTACACTGGCTCTCATACATCGGTGCCGACGCCATGTCCCATACATGGTCTTACAC
1 GACATGGTCTTACACTGGCTCTCATACATCGGTGCCGACGCCATGTCCCAGACATGGGCTTACAC
* * *
50889042 TGACACATATAACAATACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGTGG
66 TGACACATAT-ACAACACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGG
50889107 TCGATGCCATGCCTTA
130 TCGATGCCATGCCTTA
* * *
50889123 GACATGGTTTTACACTGGCTCTCATA-AT--GTGGCTGATGCCATGTCCCAGACATGGGCTTACA
1 GACATGGTCTTACACTGGCTCTCATACATCGGT-GCCGACGCCATGTCCCAGACATGGGCTTACA
* * *
50889185 CTAGCACACATAT-CAACACCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGT
65 CT-G-ACACATATACAACACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGT
* * * *
50889249 GGCCAATGCCGTGTCC-GA
128 GGTCGATGCCATG-CCTTA
50889267 GACATGGTCTTACA
1 GACATGGTCTTACA
50889281 TTAGCACACA
Statistics
Matches: 138, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
143 2 0.01
144 98 0.71
145 5 0.04
146 33 0.24
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (145 bp):
GACATGGTCTTACACTGGCTCTCATACATCGGTGCCGACGCCATGTCCCAGACATGGGCTTACAC
TGACACATATACAACACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGT
CGATGCCATGCCTTA
Found at i:50895111 original size:43 final size:43
Alignment explanation
Indices: 50895050--50895388 Score: 461
Period size: 43 Copynumber: 7.9 Consensus size: 43
50895040 ACATGGATGT
* *
50895050 ATATATGATTACATGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
50895093 ATATGTGATTACGTGTAAGACCACGTTTGGGGCGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
*
50895136 ATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
50895179 ATATATGATTATGTGTAAGACCATGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
*
50895222 ATATGTGATTACGTGTAAAACCACGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
50895265 ATATGTGATTACATGTAAGACC-CTGTTTGGGACAG-TGGCATCA
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
* * *
50895308 ATATGTGATTATGTGTAAGA-CACTATCTGGGACAG-TGGCATCA
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
* *
50895351 ATATGTGATTGCTTGTAAGACCACGTCTGGGACGTTGG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
50895389 TATTGTACGA
Statistics
Matches: 266, Mismatches: 25, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
42 3 0.01
43 259 0.97
44 4 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:50899634 original size:48 final size:48
Alignment explanation
Indices: 50899482--50899896 Score: 317
Period size: 48 Copynumber: 8.6 Consensus size: 48
50899472 AGGGTAAAAT
* * * *
50899482 GCCGATGCCATGTCCCGGACATGCTCTTACACTAGCTCTC-TCACATCG-G
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-A-AT-GTG
* * * * **
50899531 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACACAT-ATAACAAT-
1 -GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTC-TCATAA-TGTG
* * * *
50899580 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCACATTGTG
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * *
50899628 GTCGATGCCATG-TCTTAGACATGGTATTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCTCATAATGTG
* * * * * * * * ***
50899676 GTCGATGCCATG-TCACAAATATAGTCTTAAACTAGCACACAT-ATCAAC
1 GCCGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCTCATAAT-GTG
50899724 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * * * ***
50899772 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAAC
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
* * *
50899820 GTCGATGCCATGTCCCAG-CATGGTCATACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* *
50899867 GCCAATGCCATGTCCCAGACATGGTCTTAC
1 GCCGATGCCATGTTCCAGACATGGTCTTAC
50899897 CCTATCACAC
Statistics
Matches: 285, Mismatches: 67, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
47 42 0.15
48 203 0.71
49 5 0.02
50 33 0.12
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:50899824 original size:144 final size:144
Alignment explanation
Indices: 50899482--50899833 Score: 399
Period size: 144 Copynumber: 2.4 Consensus size: 144
50899472 AGGGTAAAAT
* * * *
50899482 GCCGATGCCATGTCCCGGACATGCTCTTACACTAGCTCTC-TCA-CATCGGTGCCAATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATC-GT--CGATGCCATGT
* * * * *
50899545 CCCAGACATGGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCAAACATGGTCTTAC
63 CACAAACATAGTCTTAAACTGACACATAT-ACAACGCCGATGCCATGTTCCAAACATGGTCTTAC
*
50899610 ACTGGCTCGCACATTGTG
127 ACTGGCTCGCACAATGTG
* ** * * * *
50899628 GTCGATGCCATGTCTTAGACATGGTATTACACTGGCTCTCATAAT-GTGGTCGATGCCATGTCAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATCGTCGATGCCATGTCAC
* *
50899692 AAATATAGTCTTAAACTAGCACACATAT-CAACGCCGATGCCATGTTCCAGACATGGTCTTACAC
66 AAACATAGTCTTAAACT-G-ACACATATACAACGCCGATGCCATGTTCCAAACATGGTCTTACAC
* *
50899756 TGGCTCTCATAATGTG
129 TGGCTCGCACAATGTG
* * *
50899772 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGTCGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATCGTCGATGCCATGTC
50899834 CCAGCATGGT
Statistics
Matches: 170, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
143 2 0.01
144 121 0.71
145 1 0.01
146 43 0.25
147 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATCGTCGATGCCATGTCAC
AAACATAGTCTTAAACTGACACATATACAACGCCGATGCCATGTTCCAAACATGGTCTTACACTG
GCTCGCACAATGTG
Found at i:50899881 original size:95 final size:96
Alignment explanation
Indices: 50899482--50899914 Score: 446
Period size: 96 Copynumber: 4.5 Consensus size: 96
50899472 AGGGTAAAAT
* * * * * *
50899482 GCCGATGCCATGTCCCGGACATGCTCTTACACTAGCTCTC-TCA-CATCGGTGCCAATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAAC-GT--CGATGCCATGT
* * * **
50899545 CCCAGACATGGTCTTACACTGACACAT-ATAACAAT-
62 CCCAGACATGGTCATACACTGGCTC-TCATAA-TGTG
* * * * * * **** **
50899580 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCACATTGTGGTCGATGCCATGTCTTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCA
50899645 GACATGGT-ATTACACTGGCTCTCATAATGTG
66 GACATGGTCA-TACACTGGCTCTCATAATGTG
* * * * * * * *
50899676 GTCGATGCCATGTCACAAATATAGTCTTAAACTAGCACACATATCAACGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCA
*
50899741 GACATGGTCTTACACTGGCTCTCATAATGTG
66 GACATGGTCATACACTGGCTCTCATAATGTG
50899772 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCA
50899837 G-CATGGTCATACACTGGCTCTCATAATGTG
66 GACATGGTCATACACTGGCTCTCATAATGTG
* * *
50899867 GCCAATGCCATGTCCCAGACATGGTCTTACCCTATCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
50899915 CAAATGTCTT
Statistics
Matches: 280, Mismatches: 49, Indels: 15
0.81 0.14 0.04
Matches are distributed among these distances:
95 75 0.27
96 167 0.60
98 37 0.13
99 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCA
GACATGGTCATACACTGGCTCTCATAATGTG
Found at i:50906039 original size:26 final size:26
Alignment explanation
Indices: 50906010--50906059 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
50906000 CTCTCTCAAG
50906010 CCATATAA-TAGGAAGCTCACAAAGTA
1 CCAT-TAATTAGGAAGCTCACAAAGTA
*
50906036 CCATTAATTGGGAAGCTCACAAAG
1 CCATTAATTAGGAAGCTCACAAAG
50906060 AGCCTATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (26 bp):
CCATTAATTAGGAAGCTCACAAAGTA
Found at i:50906163 original size:26 final size:26
Alignment explanation
Indices: 50906087--50906185 Score: 80
Period size: 26 Copynumber: 3.9 Consensus size: 26
50906077 ATCCGGGACA
*
50906087 TAAT-AGGAAGCT--CGTAAGAG-CTG
1 TAATCAGGAAGCTCACG-AAGAGCCTT
* * * * *
50906110 TAATTAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
50906136 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
* * *
50906162 TAAACGGGAAGCTCATGAAGAGCC
1 TAATCAGGAAGCTCACGAAGAGCC
50906186 ATTGATCAAG
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
23 4 0.07
24 7 0.12
25 4 0.07
26 44 0.75
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (26 bp):
TAATCAGGAAGCTCACGAAGAGCCTT
Found at i:50913642 original size:46 final size:45
Alignment explanation
Indices: 50913587--50913761 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
50913577 GTTTGGGCAT
* *
50913587 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GC
* * *** * *
50913633 CTGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGC
* *
50913680 CCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GC
*
50913726 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50913762 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.63
47 28 0.27
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGC
Found at i:50913752 original size:93 final size:93
Alignment explanation
Indices: 50913582--50913753 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
50913572 AGGATGTTTG
* * * * * *
50913582 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
50913647 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
50913675 GGCACCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50913740 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50913754 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCACCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50918475 original size:46 final size:45
Alignment explanation
Indices: 50918419--50918594 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
50918409 TGTTTGGGCA
*
50918419 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
50918465 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
50918512 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
50918558 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50918595 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50918574 original size:93 final size:93
Alignment explanation
Indices: 50918415--50918586 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50918405 AGGATGTTTG
* * * *
50918415 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50918480 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
50918508 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
50918573 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
50918587 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50921538 original size:27 final size:26
Alignment explanation
Indices: 50921502--50921611 Score: 148
Period size: 27 Copynumber: 4.1 Consensus size: 26
50921492 TAGCATGGCT
* *
50921502 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
50921528 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
50921556 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
50921583 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
50921610 AC
1 AC
50921612 TAGGACGCTT
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:50921566 original size:54 final size:54
Alignment explanation
Indices: 50921502--50921611 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
50921492 TAGCATGGCT
*
50921502 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * *
50921556 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
50921610 AC
1 AC
50921612 TAGGACGCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:50932269 original size:27 final size:27
Alignment explanation
Indices: 50932239--50932366 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
50932229 TACTGAAATG
* * *
50932239 CCCTCGATTTGTAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
50932266 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* **
50932293 CCCTTGATTTATAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
50932320 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
50932347 CCCTTGATTTACAAAATTAC
1 CCCTCGATTTATAAAATTAC
50932367 TTCGATTTAC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:50932311 original size:54 final size:54
Alignment explanation
Indices: 50932239--50932529 Score: 348
Period size: 54 Copynumber: 5.6 Consensus size: 54
50932229 TACTGAAATG
* * * *
50932239 CCCTCGATTTGTAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
50932293 CCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
50932347 CCCTTGATTTACAAAATTAC-----T----TCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
50932392 CCCTCGATTTATATAATTACTATTTTATCCTCAATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
50932446 CCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
*
50932500 CCCTCGATTTATAAAATTACCATTTTACCC
1 CCCTCGATTTATAAAATTACTATTTTACCC
50932530 CTAAGGTGTT
Statistics
Matches: 204, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
45 41 0.20
49 1 0.00
50 1 0.00
54 161 0.79
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:50932363 original size:81 final size:80
Alignment explanation
Indices: 50932239--50932529 Score: 337
Period size: 81 Copynumber: 3.7 Consensus size: 80
50932229 TACTGAAATG
* * *
50932239 CCCTCGATTTGTAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCC-TGATTTA
* * *
50932304 TAAAATTACTGTTTTA
65 CAGAATTACTATTTTA
* *
50932320 CCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAAAATTA-C---TT---C-GATTTAC
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTGATTTAC
*
50932377 AGAATTACCATTTTA
66 AGAATTACTATTTTA
* * * * * *
50932392 CCCTCGATTTATATAATTACTATTTTATCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCT-GATTTA
50932457 CAGAATTACTATTTTA
65 CAGAATTACTATTTTA
* * * *
50932473 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCC
50932530 CTAAGGTGTT
Statistics
Matches: 175, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
72 57 0.33
73 1 0.01
74 1 0.01
76 2 0.01
77 2 0.01
79 1 0.01
80 1 0.01
81 110 0.63
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTGATTTAC
AGAATTACTATTTTA
Found at i:50932374 original size:45 final size:45
Alignment explanation
Indices: 50932323--50932412 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
50932313 TGTTTTACCC
*
50932323 TCGATTTACAGAATTACCATTTTACCCTTGATTTACAAAATTACT
1 TCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT
* *
50932368 TCGATTTACAGAATTACCATTTTACCCTCGATTTATATAATTACT
1 TCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT
50932413 ATTTTATCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (45 bp):
TCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT
Found at i:50932402 original size:27 final size:27
Alignment explanation
Indices: 50932368--50932529 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
50932358 CAAAATTACT
50932368 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* * * *
50932395 TCGATTTATATAATTACTATTTTATCC
1 TCGATTTACAGAATTACCATTTTACCC
* * *
50932422 TCAATTTACAGAATTATCGTTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
*
50932449 TCGATTTACAGAATTACTATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* * *
50932476 TCGATTTATAAAATTACCGTTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* *
50932503 TCGATTTATAAAATTACCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
50932530 CTAAGGTGTT
Statistics
Matches: 115, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TCGATTTACAGAATTACCATTTTACCC
Found at i:50932445 original size:99 final size:99
Alignment explanation
Indices: 50932269--50932529 Score: 306
Period size: 99 Copynumber: 2.5 Consensus size: 99
50932259 TATTTTACCC
* * * * *
50932269 TCGATTTATAAAATTACCGTTTTACCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAG
1 TCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCAATTTACAG
*
50932334 AATTACCATTTTACCCTTGATTTACAAAATTACT
66 AATTACCATTTTACCCTCGATTTACAAAATTACT
* * *
50932368 TCGATTTACAGAATTACCATTTTACCCTCGATTTATATAATTACTATTTTATCCTCAATTTACAG
1 TCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCAATTTACAG
* * *
50932433 AATTATCGTTTTACCCTCGATTTACAGAATTACTATTTTACCC
66 AATTACCATTTTACCCTCGATTTAC--AA--A--A--TTA-CT
* * *
50932476 TCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTATTTTACCC
50932530 CTAAGGTGTT
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
99 79 0.59
101 2 0.01
103 1 0.01
105 1 0.01
107 3 0.02
108 49 0.36
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (99 bp):
TCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCAATTTACAG
AATTACCATTTTACCCTCGATTTACAAAATTACT
Found at i:50932471 original size:126 final size:126
Alignment explanation
Indices: 50932242--50932492 Score: 360
Period size: 126 Copynumber: 2.0 Consensus size: 126
50932232 TGAAATGCCC
** * * ** *
50932242 TCGATTTGTAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTATAA
1 TCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
*
50932307 AATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAAAATTACT
66 AATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT
* * * *
50932368 TCGATTTACAGAATTACCATTTTACCCTCGATTTATATAATTACTATTTTATCCTCAATTTACAG
1 TCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
* *
50932433 AATTA-TCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTAC
66 AATTACT-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
50932493 CGTTTTACCC
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
125 1 0.01
126 109 0.99
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.43
Consensus pattern (126 bp):
TCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
AATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT
Found at i:50932905 original size:27 final size:26
Alignment explanation
Indices: 50932853--50932912 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50932843 ACATATATAT
*
50932853 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50932879 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50932906 ATATCTG
1 ATATCTG
50932913 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:50933065 original size:31 final size:31
Alignment explanation
Indices: 50933030--50933109 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
50933020 TTGCATTCAC
* * *
50933030 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* * * *
50933061 ATTCTAATTCTAATTTTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
50933092 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
50933110 ATTCTGATTC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:50933097 original size:6 final size:6
Alignment explanation
Indices: 50933086--50933172 Score: 97
Period size: 6 Copynumber: 14.3 Consensus size: 6
50933076 TTGTCACCTA
*
50933086 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
50933135 ATTCTG GTTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
50933173 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
5 2 0.03
6 61 0.90
7 4 0.06
8 1 0.01
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50933161 original size:43 final size:43
Alignment explanation
Indices: 50933052--50933163 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
50933042 ATTCTGTTAC
* * *
50933052 CTGATACTGATTCTAATTCTAATTTTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGATTCTGTCACCTAATTCTGATT
* *
50933095 CTGATTCTGATTCTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTAATTCTGATTCTGTCACCTAATTCTGATT
* * *
50933138 CTGGTTCTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTAATTCTGATTCT
50933164 AGTTCTGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (43 bp):
CTGATTCTGATTCTAATTCTGATTCTGTCACCTAATTCTGATT
Found at i:50936956 original size:26 final size:26
Alignment explanation
Indices: 50936926--50936987 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
50936916 ATCCTATCTC
*
50936926 AAGCCATATAA-CAGGAAACTCACAAA
1 AAGCCAT-TAATCAAGAAACTCACAAA
* *
50936952 GAGCCATTAATCAAGAAGCTCACAAA
1 AAGCCATTAATCAAGAAACTCACAAA
50936978 AAGCCTATTA
1 AAGCC-ATTA
50936988 GAAAGCTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.77
27 4 0.13
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (26 bp):
AAGCCATTAATCAAGAAACTCACAAA
Found at i:50937070 original size:26 final size:24
Alignment explanation
Indices: 50937011--50937091 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 24
50937001 AGCTAAATAG
50937011 CAGGAAGCTCATAAGAGCCATAAT
1 CAGGAAGCTCATAAGAGCCATAAT
*
50937035 CAGGAAGCTCACTAAGAGCCTTTAAAT
1 CAGGAAGCTCA-TAAGAGCC-AT-AAT
* *
50937062 -GGGAAGCTCATGAAGGGCCATTAAT
1 CAGGAAGCTCAT-AAGAGCCA-TAAT
50937087 CAGGA
1 CAGGA
50937092 GTTCTGAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
24 11 0.24
25 12 0.26
26 20 0.43
27 3 0.07
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.19
Consensus pattern (24 bp):
CAGGAAGCTCATAAGAGCCATAAT
Found at i:50949827 original size:24 final size:24
Alignment explanation
Indices: 50949795--50949883 Score: 110
Period size: 24 Copynumber: 3.7 Consensus size: 24
50949785 TCTTACTTAT
50949795 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTTTTC
* **
50949819 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTTTTC
50949843 TCGCACACATAGTGCCACTTAGTTTT-
1 TCGCACACATAGTGCCAC---GTTTTC
50949869 T-GCACACATAGTGCC
1 TCGCACACATAGTGCC
50949884 GCATAACCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 38 0.68
25 14 0.25
26 1 0.02
27 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTTTTC
Found at i:50949833 original size:49 final size:48
Alignment explanation
Indices: 50949771--50949906 Score: 136
Period size: 49 Copynumber: 2.8 Consensus size: 48
50949761 TTTGAAAGTC
* *
50949771 CGCACACATAGTGCTCTTACTTAT-TCGCACACATAGTGCCAC-GTTTTCT
1 CGCACACATAGTGC-CAT-CTAATCTCGCACACATAGTGCCACTGTTTT-T
*
50949820 CGCACACATAGTGCCATGTAATCTCGCACACATAGTGCCACTTAGTTTTT
1 CGCACACATAGTGCCATCTAATCTCGCACACATAGTGCCAC-T-GTTTTT
* * *
50949870 -GCACACATAGTGCC-GCATAACCTTGCACACATAGTGC
1 CGCACACATAGTGCCATC-TAATCTCGCACACATAGTGC
50949907 TGAAATTTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
47 3 0.04
48 20 0.27
49 46 0.61
50 1 0.01
51 5 0.07
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (48 bp):
CGCACACATAGTGCCATCTAATCTCGCACACATAGTGCCACTGTTTTT
Found at i:50949898 original size:73 final size:73
Alignment explanation
Indices: 50949771--50949906 Score: 175
Period size: 73 Copynumber: 1.9 Consensus size: 73
50949761 TTTGAAAGTC
* * ***
50949771 CGCACACATAGTGCTCTTACTTATTCGCACACATAGTGCCACGTTTTCTCGCACACATAGTGCCA
1 CGCACACATAGTGCACTTACTTATTCGCACACATAGTGCCACATAACCTCGCACACATAGTGCCA
50949836 TGTAATCT
66 TGTAATCT
* * * *
50949844 CGCACACATAGTGCCACTTAGTT-TTTGCACACATAGTGCCGCATAACCTTGCACACATAGTGC
1 CGCACACATAGTG-CACTTACTTATTCGCACACATAGTGCCACATAACCTCGCACACATAGTGC
50949907 TGAAATTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
73 46 0.87
74 7 0.13
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (73 bp):
CGCACACATAGTGCACTTACTTATTCGCACACATAGTGCCACATAACCTCGCACACATAGTGCCA
TGTAATCT
Found at i:50950983 original size:20 final size:21
Alignment explanation
Indices: 50950958--50950996 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50950948 TAATTTCTTC
*
50950958 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
50950978 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
50950997 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:50953523 original size:40 final size:40
Alignment explanation
Indices: 50953468--50953647 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
50953458 TTCGGATGAC
50953468 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
50953508 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
50953548 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
50953588 ATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
* *
50953628 ATCC-GACTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
50953648 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 117 0.89
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:50962022 original size:39 final size:41
Alignment explanation
Indices: 50961883--50962022 Score: 234
Period size: 40 Copynumber: 3.5 Consensus size: 41
50961873 TTCAGATGAC
50961883 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
50961923 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
*
50961963 ATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
*
50962003 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
50962023 TACTTAGGTT
Statistics
Matches: 95, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
39 15 0.16
40 77 0.81
41 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
Found at i:50963380 original size:34 final size:34
Alignment explanation
Indices: 50963337--50963404 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
50963327 GAACTGCGTA
50963337 AGTAAATGAATTAAGTCCGTTAACACCTCGTGTT
1 AGTAAATGAATTAAGTCCGTTAACACCTCGTGTT
50963371 AGTAAATGAATTAAGTCCGTTAACACCTCGTGTT
1 AGTAAATGAATTAAGTCCGTTAACACCTCGTGTT
50963405 CGACTCCGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (34 bp):
AGTAAATGAATTAAGTCCGTTAACACCTCGTGTT
Found at i:50972462 original size:2 final size:2
Alignment explanation
Indices: 50972457--50972486 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
50972447 AGTATATATA
50972457 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
50972487 AAATTGCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:50977671 original size:27 final size:26
Alignment explanation
Indices: 50977627--50977678 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50977617 CTCGCTGTAA
*
50977627 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
50977654 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
50977679 GCAACTTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:50981968 original size:79 final size:81
Alignment explanation
Indices: 50981859--50982041 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
50981849 TACTCGTTCA
* *
50981859 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
50981922 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
50981939 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
50982002 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
50982018 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
50982042 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:50982041 original size:40 final size:40
Alignment explanation
Indices: 50981838--50982041 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
50981828 CGGAATTTAA
** *
50981838 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50981878 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50981918 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50981957 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50981997 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50982037 CCGGA
1 CCGGA
50982042 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50989004 original size:39 final size:40
Alignment explanation
Indices: 50988890--50989074 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
50988880 GCTACTCGTT
*
50988890 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50988930 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
50988970 CCAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
50989009 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
50989050 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50989075 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50989058 original size:79 final size:80
Alignment explanation
Indices: 50988890--50989074 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
50988880 GCTACTCGTT
* * *
50988890 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
50988954 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
50988971 CAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
50989034 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
**
50989050 CAAAGCCTTTGGGACTTAGCCCGGA
1 CAAAGCCTTCAGGACTTAGCCCGGA
50989075 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:51006979 original size:24 final size:24
Alignment explanation
Indices: 51006952--51006997 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
51006942 TATAATATGG
* * *
51006952 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
51006976 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
51006998 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:51007059 original size:20 final size:20
Alignment explanation
Indices: 51007034--51007102 Score: 129
Period size: 20 Copynumber: 3.5 Consensus size: 20
51007024 ATTCTGATAT
*
51007034 ACATGATATGTATGATATGA
1 ACATGATATGTATGATATGC
51007054 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51007074 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51007094 ACATGATAT
1 ACATGATAT
51007103 ATTCATAATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51007061 original size:11 final size:10
Alignment explanation
Indices: 51007028--51007102 Score: 68
Period size: 9 Copynumber: 7.6 Consensus size: 10
51007018 CATGGGATTC
51007028 TGATAT-ACA
1 TGATATGACA
*
51007037 TGATATG-TA
1 TGATATGACA
51007046 TGATATGAACA
1 TGATATG-ACA
*
51007057 TGATATG-TA
1 TGATATGACA
51007066 TGATATGCACA
1 TGATATG-ACA
*
51007077 TGATATG-TA
1 TGATATGACA
51007086 TGATATGCACA
1 TGATATG-ACA
51007097 TGATAT
1 TGATAT
51007103 ATTCATAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:51007113 original size:20 final size:20
Alignment explanation
Indices: 51007034--51007114 Score: 83
Period size: 20 Copynumber: 4.0 Consensus size: 20
51007024 ATTCTGATAT
* * *
51007034 ACATGATATGTATGATATGA
1 ACATGATATATATCATATGC
* *
51007054 ACATGATATGTATGATATGC
1 ACATGATATATATCATATGC
* *
51007074 ACATGATATGTATGATATGC
1 ACATGATATATATCATATGC
51007094 ACATGATATAT-TCATAATGC
1 ACATGATATATATCAT-ATGC
51007114 A
1 A
51007115 TTGGGATGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 3 0.05
20 54 0.95
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (20 bp):
ACATGATATATATCATATGC
Found at i:51007114 original size:40 final size:40
Alignment explanation
Indices: 51007034--51007114 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
51007024 ATTCTGATAT
* *
51007034 ACATGATATGTATGATATGAACATGATATGTATGATATGC
1 ACATGATATGTATGATATGAACATGATATATATCATATGC
*
51007074 ACATGATATGTATGATATGCACATGATATAT-TCATAATGC
1 ACATGATATGTATGATATGAACATGATATATATCAT-ATGC
51007114 A
1 A
51007115 TTGGGATGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (40 bp):
ACATGATATGTATGATATGAACATGATATATATCATATGC
Found at i:51007174 original size:24 final size:24
Alignment explanation
Indices: 51007147--51007242 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
51007137 GAGGAAGTGC
51007147 AAAAGGGCTATGCCCCAGTTACTG
1 AAAAGGGCTATGCCCCAGTTACTG
* *
51007171 AAAAGGGCTTTACCCCAGTTTACTG
1 AAAAGGGCTATGCCCCAG-TTACTG
* *
51007196 AAAAGGGCTTTTGCCCCAGTTA-TT
1 AAAAGGGC-TATGCCCCAGTTACTG
*
51007220 AAAAGAGGCTAGGCCTCCAGTTA
1 AAAAG-GGCTATGCC-CCAGTTA
51007243 TATGGTAAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
24 26 0.42
25 27 0.44
26 9 0.15
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTACTG
Found at i:51007199 original size:25 final size:25
Alignment explanation
Indices: 51007147--51007216 Score: 106
Period size: 24 Copynumber: 2.8 Consensus size: 25
51007137 GAGGAAGTGC
*
51007147 AAAAGGGCTATGCCCCAG-TTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
51007171 AAAAGGGCTTTACCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
51007196 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGC-TTTGCCCCAGTT
51007217 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.39
25 14 0.34
26 11 0.27
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:51007479 original size:31 final size:31
Alignment explanation
Indices: 51007436--51007545 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
51007426 TTGTTACAGT
51007436 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
51007467 AAAGACTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
51007498 AAAGGCTTCGGCCCAGTGATTTGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
51007529 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
51007546 AAATACTGAG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:51015621 original size:46 final size:46
Alignment explanation
Indices: 51015571--51015743 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
51015561 TGGTTGAGCA
51015571 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
51015617 TCCGAATTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51015662 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51015710 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51015744 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51015727 original size:93 final size:93
Alignment explanation
Indices: 51015568--51015738 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
51015558 GGATGGTTGA
* * *
51015568 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAATTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
51015633 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51015661 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51015726 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51015739 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51025389 original size:20 final size:20
Alignment explanation
Indices: 51025364--51025409 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
51025354 ATTCTGATAC
51025364 TGATATGTATGATATGAACA
1 TGATATGTATGATATGAACA
*
51025384 TGATATGTATGATATGCACA
1 TGATATGTATGATATGAACA
51025404 TGATAT
1 TGATAT
51025410 ATTCATAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (20 bp):
TGATATGTATGATATGAACA
Found at i:51025522 original size:26 final size:25
Alignment explanation
Indices: 51025454--51025523 Score: 97
Period size: 24 Copynumber: 2.8 Consensus size: 25
51025444 GAGGAAGTGC
* *
51025454 AAAAGGGCTATGCCCTAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
51025478 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
51025503 AAAAGGGATTTTGCCCCAGTT
1 AAAAGGG-CTTTGCCCCAGTT
51025524 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.39
25 13 0.32
26 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:51025787 original size:31 final size:31
Alignment explanation
Indices: 51025742--51025856 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
51025732 TTGTTACAGT
51025742 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* *
51025773 AAAAGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
*
51025804 AAAGGCTTCAGCCCAGTGATATGAATAATGT
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
51025835 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
51025857 CTGAGATTGA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:51030259 original size:26 final size:27
Alignment explanation
Indices: 51030230--51030290 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
51030220 TACGGGTAAA
*
51030230 TCGGT-ATCCTACCCAACAGGGGTATT
1 TCGGTAATCCTACCCAACAAGGGTATT
* **
51030256 TCGGTAATTCTACCTTACAAGGGTATT
1 TCGGTAATCCTACCCAACAAGGGTATT
*
51030283 TCTGTAAT
1 TCGGTAAT
51030291 TTTGTAAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TCGGTAATCCTACCCAACAAGGGTATT
Found at i:51030433 original size:27 final size:27
Alignment explanation
Indices: 51030323--51030459 Score: 136
Period size: 27 Copynumber: 5.1 Consensus size: 27
51030313 ATAATTCTTT
*
51030323 AAATCGAGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
* **
51030350 AAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
** * *
51030377 AGGTCGAGGGTATTTCT-ATAATTTCAC
1 AAATCGAGGGTATTT-TGGTAATTTTAC
51030404 AAATC-AGGAGTATTTTGGTAATTTTAC
1 AAATCGAGG-GTATTTTGGTAATTTTAC
* *
51030431 AAA-CCAGGGGTATTTTGGTAATTCTAC
1 AAATCGA-GGGTATTTTGGTAATTTTAC
51030458 AA
1 AA
51030460 CTTATCCACT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.05
27 85 0.92
28 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTAC
Found at i:51035842 original size:49 final size:49
Alignment explanation
Indices: 51035782--51036285 Score: 802
Period size: 47 Copynumber: 10.6 Consensus size: 49
51035772 GATAATTGTG
*
51035782 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51035829 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51035878 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51035927 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51035974 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51036021 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51036070 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51036119 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51036166 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
51036213 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51036260 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
51036286 TACCGAAGGG
Statistics
Matches: 433, Mismatches: 18, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
47 235 0.54
48 3 0.01
49 195 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51036075 original size:192 final size:192
Alignment explanation
Indices: 51035782--51036285 Score: 863
Period size: 192 Copynumber: 2.6 Consensus size: 192
51035772 GATAATTGTG
* *
51035782 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
51035847 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
51035912 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
51035974 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
51036039 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
51036104 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* *
51036166 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
51036229 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51036286 TACCGAAGGG
Statistics
Matches: 298, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
188 10 0.03
189 1 0.00
190 44 0.15
192 243 0.82
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:51041605 original size:71 final size:67
Alignment explanation
Indices: 51041528--51041669 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
51041518 TCACCAGATA
* * * *
51041528 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTAGCGAAGCCACCAGATTGCAGCGA
51041593 GGCTGC
62 GGCTGC
* *
51041599 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTAGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACCAGATTGCAGCGAGGCT
51041664 GC
66 GC
51041666 CAGA
1 CAGA
51041670 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:51042338 original size:27 final size:27
Alignment explanation
Indices: 51042308--51042362 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
51042298 TCAGTAGTCC
*
51042308 TACCCTACAAGGGTATTTCGGTAATTT
1 TACCCTACAAGGGTATTTCGATAATTT
* *
51042335 TACCTTACAAGGGTATTTCTATAATTT
1 TACCCTACAAGGGTATTTCGATAATTT
51042362 T
1 T
51042363 GTAAATCGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATTT
Found at i:51042374 original size:27 final size:27
Alignment explanation
Indices: 51042344--51042443 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
51042334 TTACCTTACA
51042344 AGGGTATTTCTATAATTTTGTAAATCG
1 AGGGTATTTCTATAATTTTGTAAATCG
*** * *
51042371 AGGGTAAAACGATAATTATGTAAATCG
1 AGGGTATTTCTATAATTTTGTAAATCG
* ** *
51042398 AGGGTATTT-TGGTAATTTTACAAGTCG
1 AGGGTATTTCT-ATAATTTTGTAAATCG
51042425 AGGGTATTTC-AGTAATTTT
1 AGGGTATTTCTA-TAATTTT
51042444 ACAGGTCGAG
Statistics
Matches: 55, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCTATAATTTTGTAAATCG
Found at i:51042444 original size:27 final size:27
Alignment explanation
Indices: 51042392--51042528 Score: 141
Period size: 27 Copynumber: 5.1 Consensus size: 27
51042382 ATAATTATGT
51042392 AAATCGAGGGTATTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
* **
51042419 AAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
** * ** * *
51042446 AGGTCGAGGTTATTTCAGTAGTTTCAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
51042473 AAATC-AGGGATATTTTGGTAATTTTAC
1 AAATCGAGGG-TATTTTGGTAATTTTAC
* * *
51042500 AAACCAAGGGTATTTTGGTAATTCTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
51042527 AA
1 AA
51042529 CTTATCCACT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.03
27 85 0.92
28 4 0.04
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTAC
Found at i:51044637 original size:29 final size:29
Alignment explanation
Indices: 51044573--51044648 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
51044563 CTTACATGCT
* *
51044573 TATGACCCACTAGGCCC-AATCTCATTCA
1 TATGGCCCACTAGGCCCAAATCACATTCA
*
51044601 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCCAAATCACATTC-A
*
51044630 TATTGCCCACTAGGCCCAA
1 TATGGCCCACTAGGCCCAA
51044649 TTACTTTTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.41
29 24 0.59
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATTCA
Found at i:51044895 original size:16 final size:16
Alignment explanation
Indices: 51044871--51044906 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
51044861 GTAGCCAAAC
* *
51044871 TTTTGGCTTTTTGGCA
1 TTTTAGCTTTTCGGCA
51044887 TTTTAGCTTTTCGGCA
1 TTTTAGCTTTTCGGCA
51044903 TTTT
1 TTTT
51044907 GATTTTTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.14, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTAGCTTTTCGGCA
Found at i:51051317 original size:15 final size:15
Alignment explanation
Indices: 51051297--51051326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51051287 ATTATGAAAG
51051297 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
51051312 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
51051327 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:51064139 original size:43 final size:43
Alignment explanation
Indices: 51064005--51064208 Score: 323
Period size: 43 Copynumber: 4.9 Consensus size: 43
51063995 GGATATAGCT
* *
51064005 ACTCGCTCAACTGCCTTCGGGACTTAGCCCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
51064045 ACTCGCACAAAT-CCTTCGGGACTTAGCCCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
51064084 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
*
51064127 ACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
*
51064170 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATCAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCAT
51064209 CCGAATATTC
Statistics
Matches: 155, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 39 0.25
40 29 0.19
42 2 0.01
43 85 0.55
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (43 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
Found at i:51065953 original size:50 final size:51
Alignment explanation
Indices: 51065884--51066015 Score: 158
Period size: 52 Copynumber: 2.6 Consensus size: 51
51065874 ATCGGGTACG
* **
51065884 CATATTAGCCTGCACTTAGTACTACACATGCGACCT-AACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
** * * * *
51065934 TGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAACCATCTGAAACA
*
51065986 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
51066016 TGTTCTCACA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 31 0.46
52 36 0.54
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
Found at i:51070939 original size:27 final size:27
Alignment explanation
Indices: 51070908--51070964 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
51070898 ACAATCCACC
* *
51070908 ACATATATGTTAATAAACGGCCACATA
1 ACATATATGTTAATAAACAGACACATA
51070935 ACATATATGTTAATAAACAGACACATA
1 ACATATATGTTAATAAACAGACACATA
51070962 ACA
1 ACA
51070965 CATTGTGGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.25
Consensus pattern (27 bp):
ACATATATGTTAATAAACAGACACATA
Found at i:51073763 original size:47 final size:47
Alignment explanation
Indices: 51073695--51073806 Score: 224
Period size: 47 Copynumber: 2.4 Consensus size: 47
51073685 GACACAAATG
51073695 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
51073742 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
51073789 TATATACACTTTCACATT
1 TATATACACTTTCACATT
51073807 ACCAACCCTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (47 bp):
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
Found at i:51074108 original size:39 final size:40
Alignment explanation
Indices: 51074012--51074172 Score: 134
Period size: 40 Copynumber: 4.0 Consensus size: 40
51074002 CGGAATTTAA
**
51074012 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGC
* *
51074052 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
* * * *
51074091 CCGGA-ATTGGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAGC
* * * * *
51074131 CCGGATATGGTCACTTAGCACAAA-ACCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAGC
51074171 CC
1 CC
51074173 ATACATCATT
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.31
40 55 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:51078211 original size:40 final size:40
Alignment explanation
Indices: 51078167--51078465 Score: 499
Period size: 40 Copynumber: 7.5 Consensus size: 40
51078157 TCTTCGAGGT
* * * *
51078167 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51078207 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
51078247 TTAGCCCAGATATATCACTAGCACAAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51078287 TTAGCCTGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51078327 TTAGCCCGGATATATCACTAGCACGAATGCTCCTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
51078367 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51078407 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51078447 TTACCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
51078466 CTCAATTCTC
Statistics
Matches: 243, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 243 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:51089855 original size:26 final size:26
Alignment explanation
Indices: 51089826--51090028 Score: 104
Period size: 27 Copynumber: 7.6 Consensus size: 26
51089816 TTAGTTTACT
** *
51089826 AAATTACTGAAATACCCCCAATTGTA
1 AAATTACCCAAATACCCCCATTTGTA
*
51089852 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTACCCAAA-TACCCCC-ATTTGTA
* *
51089879 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATA-CCCCCATTTGTA
* *** **
51089906 AAATTACCGAAATACCCGTGTAAGGTA
1 AAATTACCCAAATACCCCCAT-TTGTA
* ** ** **
51089933 GAATTACTAAAATACCCCTGTAAGGTA
1 AAATTACCCAAATACCCCCAT-TTGTA
* * *
51089960 GAATTACCAAAATA-CCCTAGTTTGTA
1 AAATTACCCAAATACCCCCA-TTTGTA
* *
51089986 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCCAAATACCCCCA-TTTGTA
*
51090013 AAATTACCGAAATACC
1 AAATTACCCAAATACC
51090029 ATTGGTTTGT
Statistics
Matches: 146, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.02
26 36 0.25
27 99 0.68
28 8 0.05
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (26 bp):
AAATTACCCAAATACCCCCATTTGTA
Found at i:51089937 original size:27 final size:27
Alignment explanation
Indices: 51089907--51090128 Score: 184
Period size: 27 Copynumber: 8.3 Consensus size: 27
51089897 CGATTTGTAA
* * *
51089907 AATTACCGAAATACCCGTGTAAGGTAG
1 AATTACCAAAATACCCCTGTATGGTAG
* *
51089934 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTATGGTAG
* *
51089961 AATTACCAAAATA-CCCTAGT-TTGTAA
1 AATTACCAAAATACCCCT-GTATGGTAG
* *
51089987 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCAAAATACCCCT-GTATGGTAG
* ** *
51090014 AATTACCGAAATACCATTGGT-TTGT-G
1 AATTACCAAAATACCCCT-GTATGGTAG
* *
51090040 AAATTACCGAAATACCCTTGTATGGTAG
1 -AATTACCAAAATACCCCTGTATGGTAG
* *
51090068 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTATGGTAG
** *
51090095 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTATGGTAG
*
51090122 AAATACC
1 AATTACC
51090129 CTTATAGGGT
Statistics
Matches: 169, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.13
27 146 0.86
28 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTATGGTAG
Found at i:51089999 original size:107 final size:108
Alignment explanation
Indices: 51089853--51090084 Score: 274
Period size: 107 Copynumber: 2.2 Consensus size: 108
51089843 CCAATTGTAA
* ** * *
51089853 AATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGA-TTTGTAAAATTACCGAA
1 AATTACCAAAATACCCTAGATTTATAAAATTACCAAAATA-CCCCGAGTTTGTAAAATTACCGAA
* *
51089917 ATACCCGT-GTAAGGT-AGAATTACTAAAATACCCCTGTAAGGTAG
65 ATACCAGTGGT-AGGTGA-AATTACCAAAATACCCCTGTAAGGTAG
* *
51089961 AATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCTAGATTTATAAAATTACCAAAATACCCCGAGTTTGTAAAATTACCGAAA
* ** * * *
51090025 TACCATTGGTTTGTGAAATTACCGAAATACCCTTGTATGGTAG
66 TACCAGTGGTAGGTGAAATTACCAAAATACCCCTGTAAGGTAG
51090068 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
51090085 TGTAGGGTAG
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
106 4 0.04
107 83 0.78
108 19 0.18
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (108 bp):
AATTACCAAAATACCCTAGATTTATAAAATTACCAAAATACCCCGAGTTTGTAAAATTACCGAAA
TACCAGTGGTAGGTGAAATTACCAAAATACCCCTGTAAGGTAG
Found at i:51090067 original size:134 final size:134
Alignment explanation
Indices: 51089847--51090110 Score: 370
Period size: 134 Copynumber: 2.0 Consensus size: 134
51089837 ATACCCCCAA
* *
51089847 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCAGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
*
51089912 CCGAAATACCCGTGTAAGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCAAAATACCC
66 CCGAAATACCCGTGTAAGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCAAAATACCC
51089977 TAGT
131 TAGT
* * * * *
51089981 TTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCGAAATA-CCATTGGTTTGTGAAAT
1 TTGTAAAATTACCAAAATACCCC-AGATTTATAAAATTACCCAAATATCC-TCGATTTGTAAAAT
* * * * **
51090044 TACCGAAATACCCTTGTATGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATAC
64 TACCGAAATACCCGTGTAAGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCAAAATAC
51090109 CC
129 CC
51090111 CTGTAGGGTA
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
133 2 0.02
134 111 0.97
135 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (134 bp):
TTGTAAAATTACCAAAATACCCCAGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
CCGAAATACCCGTGTAAGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCAAAATACCC
TAGT
Found at i:51090126 original size:19 final size:19
Alignment explanation
Indices: 51090102--51090146 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
51090092 TAGAATTACT
*
51090102 GAAATACCCCTGTAGGGTA
1 GAAATACCCCTATAGGGTA
*
51090121 GAAATACCCTTATAGGGTA
1 GAAATACCCCTATAGGGTA
*
51090140 GGAATAC
1 GAAATAC
51090147 TGAAATACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (19 bp):
GAAATACCCCTATAGGGTA
Found at i:51090148 original size:46 final size:46
Alignment explanation
Indices: 51090076--51090174 Score: 164
Period size: 46 Copynumber: 2.2 Consensus size: 46
51090066 AGAATTACCA
*
51090076 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AAATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
51090122 AAATACCCTTATAGGGTAGGAA-TACTGAAATACCCCTGTAGGGTAG
1 AAATACCCTTATAGGGTA-GAATTACTGAAATACCCCTGTAGGGTAG
*
51090168 AATTACC
1 AAATACC
51090175 GAGAAACCCT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
46 47 0.94
47 3 0.06
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (46 bp):
AAATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:51090640 original size:6 final size:6
Alignment explanation
Indices: 51090604--51090672 Score: 79
Period size: 6 Copynumber: 11.3 Consensus size: 6
51090594 TTGCATTCAC
* *
51090604 ATTCTG ATTTTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
51090653 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
51090673 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 46 0.85
7 3 0.06
8 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:51094471 original size:41 final size:41
Alignment explanation
Indices: 51094405--51094483 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
51094395 GTCTACTGGT
* *
51094405 CGTGTGAGGCACACTAGCTGGCACATGAGAGTGTGGCCGAC
1 CGTGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCCGAC
* * *
51094446 CGTGTGAGGCACACGGGCTGCCACATGGGTGTGTGGCC
1 CGTGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCC
51094484 AGCCATGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (41 bp):
CGTGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCCGAC
Found at i:51094493 original size:41 final size:41
Alignment explanation
Indices: 51094407--51094493 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
51094397 CTACTGGTCG
* * *
51094407 TGTGAGGCACACTAGCTGGCACATGAGAGTGTGGCCGACCG
1 TGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCCGACCA
* * *
51094448 TGTGAGGCACACGGGCTGCCACATGGGTGTGTGGCC-AGCCA
1 TGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCCGA-CCA
51094489 TGTGA
1 TGTGA
51094494 CCCAAGTCAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.20, C:0.24, G:0.38, T:0.18
Consensus pattern (41 bp):
TGTGAGGCACACGAGCTGCCACATGAGAGTGTGGCCGACCA
Found at i:51099751 original size:43 final size:43
Alignment explanation
Indices: 51099703--51099895 Score: 230
Period size: 43 Copynumber: 4.5 Consensus size: 43
51099693 TGTTATCGAG
* *
51099703 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATGGTA
1 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* * *
51099746 TTGTGATTACGCGTAAGACCATGTCTGGGATATTGGCATTGTA
1 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
*
51099789 TTGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGTA
1 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* * * *
51099832 TAT-TAATT-CGTGTAAGACCCTGTCTGTGACAGTGGCATCG-A
1 T-TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* * *
51099873 TATATGATAACATGTAAGACCAT
1 T-TGTGATTACGTGTAAGACCAT
51099896 ATTTGGGATA
Statistics
Matches: 130, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
41 4 0.03
42 31 0.24
43 94 0.72
44 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
Found at i:51106598 original size:29 final size:28
Alignment explanation
Indices: 51106506--51106606 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 28
51106496 ACATACCTAT
* * * * *
51106506 ATATGGCTCACTAGGCCTAATCTCTTTC
1 ATATGGCCCATTAGGCCCAATCACATTC
* *
51106534 ATATGGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCATTAGGCCCAATCACATTC
** *
51106562 ATGCGGCCCATTAGTCCCAAATCACATTC
1 ATATGGCCCATTAGGCCC-AATCACATTC
*
51106591 ATATGG-CCACTAGGCC
1 ATATGGCCCATTAGGCC
51106607 TGAATCGCAT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
28 44 0.79
29 12 0.21
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.29
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACATTC
Found at i:51111075 original size:16 final size:16
Alignment explanation
Indices: 51111050--51111100 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
51111040 GTAGCCAAAC
51111050 TTTCGGCTTTTC-GGTA
1 TTTCGGCTTTTCAGG-A
*
51111066 TTTTGGCTTTTCAGGA
1 TTTCGGCTTTTCAGGA
51111082 TTTCGGCTTTTCAGGA
1 TTTCGGCTTTTCAGGA
51111098 TTT
1 TTT
51111101 ACCGATCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 30 0.94
17 2 0.06
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGGA
Found at i:51114968 original size:27 final size:27
Alignment explanation
Indices: 51114919--51114970 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
51114909 ACATGCCGCA
* * **
51114919 CTTAGGGGTATTTGGGTCTTTTTTTCT
1 CTTAGGGGCATTTCGGTAATTTTTTCT
51114946 CTTAGGGGCATTTCGGTAATTTTTT
1 CTTAGGGGCATTTCGGTAATTTTTT
51114971 TTTATTACGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.52
Consensus pattern (27 bp):
CTTAGGGGCATTTCGGTAATTTTTTCT
Found at i:51115287 original size:28 final size:27
Alignment explanation
Indices: 51115254--51115355 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 27
51115244 CATACCTATA
*
51115254 TATATGGCCCACTAGGCCCAATCTCTT
1 TATATGGCCCACTAGGCCCAATCACTT
* * *
51115281 TCATATGGCCCATTA-GACCATTCACATT
1 T-ATATGGCCCACTAGGCCCAATCAC-TT
* *
51115309 TAT-TGGCCCATTAGGCCCATATCACAT
1 TATATGGCCCACTAGGCCCA-ATCACTT
*
51115336 TATATGG-CCTCTAGGCCCAA
1 TATATGGCCCACTAGGCCCAA
51115356 ATCGCATTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
26 11 0.18
27 28 0.46
28 22 0.36
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (27 bp):
TATATGGCCCACTAGGCCCAATCACTT
Found at i:51115338 original size:27 final size:28
Alignment explanation
Indices: 51115254--51115344 Score: 100
Period size: 28 Copynumber: 3.3 Consensus size: 28
51115244 CATACCTATA
* * *
51115254 TATATGGCCCACTAGGCCCA-ATCTCTT
1 TATATGGCCCATTAGGCCCATATCACAT
*
51115281 TCATATGGCCCATTA-GACCAT-TCACAT
1 T-ATATGGCCCATTAGGCCCATATCACAT
51115308 T-TATTGGCCCATTAGGCCCATATCACAT
1 TATA-TGGCCCATTAGGCCCATATCACAT
51115336 TATATGGCC
1 TATATGGCC
51115345 TCTAGGCCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
25 2 0.04
26 10 0.19
27 15 0.28
28 24 0.45
29 2 0.04
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCATATCACAT
Found at i:51117181 original size:24 final size:24
Alignment explanation
Indices: 51117153--51117202 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
51117143 CTGTTTTTGA
51117153 TGATTTTTATGTTTTCGGGATCAC
1 TGATTTTTATGTTTTCGGGATCAC
51117177 TGATTTTTATGTTTTCGGGATCAC
1 TGATTTTTATGTTTTCGGGATCAC
51117201 TG
1 TG
51117203 TAGCTTAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (24 bp):
TGATTTTTATGTTTTCGGGATCAC
Found at i:51117619 original size:47 final size:47
Alignment explanation
Indices: 51117565--51117656 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
51117555 AAAGTATGGA
*
51117565 AAAAATGGTAATTTTGCAAAAATATGTTTTGGATTAAATTGGTTGGC
1 AAAAATGGTAATTTTGCAAAAATATGTTTTGGATTAAATTAGTTGGC
51117612 AAAAATGGTAATTTTGCAAAAATATGTTTTGGATTAAATTAGTTG
1 AAAAATGGTAATTTTGCAAAAATATGTTTTGGATTAAATTAGTTG
51117657 AATTATGTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.39
Consensus pattern (47 bp):
AAAAATGGTAATTTTGCAAAAATATGTTTTGGATTAAATTAGTTGGC
Found at i:51118035 original size:25 final size:25
Alignment explanation
Indices: 51118007--51118129 Score: 115
Period size: 25 Copynumber: 4.9 Consensus size: 25
51117997 GAGATTACTA
*
51118007 ATTTATAGTTCGTGAGAGCATACCG
1 ATTTACAGTTCGTGAGAGCATACCG
* * * *
51118032 ATTTACAGCTCGTGAAAGTATACCA
1 ATTTACAGTTCGTGAGAGCATACCG
* *
51118057 ATTTACAGCTCATGAGAGCATACCG
1 ATTTACAGTTCGTGAGAGCATACCG
* * *
51118082 ATTTATAGCTT-GAGAGACCATACCG
1 ATTTACAG-TTCGTGAGAGCATACCG
*
51118107 ATTCACAGTTCGT-ATGAGCATAC
1 ATTTACAGTTCGTGA-GAGCATAC
51118130 ATGTACAGGA
Statistics
Matches: 77, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
24 3 0.04
25 73 0.95
26 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
ATTTACAGTTCGTGAGAGCATACCG
Found at i:51126135 original size:19 final size:20
Alignment explanation
Indices: 51126111--51126154 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51126101 CTATTTTGTT
51126111 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
51126130 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
51126150 ATGGG
1 ATGGG
51126155 TTAAGGCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:51126207 original size:34 final size:34
Alignment explanation
Indices: 51126158--51126295 Score: 104
Period size: 34 Copynumber: 4.3 Consensus size: 34
51126148 ATATGGGTTA
51126158 AGGCCCAGTTAACTCTGATTTCTGAATAGGGCTT
1 AGGCCCAGTTAACTCTGATTTCTGAATAGGGCTT
* *
51126192 AGGCCCAG-TATACTCTGGA--ACTGTAA-GGGGC-T
1 AGGCCCAGTTA-ACTCT-GATTTCTG-AATAGGGCTT
*
51126224 ATGGCCCAGATTAA---T-A--T-TG-ATATGGGCTA
1 A-GGCCCAG-TTAACTCTGATTTCTGAATA-GGGCTT
51126253 AGGCCCAGTTAACTCTGATTTCTGAATAGGGCTT
1 AGGCCCAGTTAACTCTGATTTCTGAATAGGGCTT
51126287 AGGCCCAGT
1 AGGCCCAGT
51126296 AAAGCTTGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 34
0.67 0.05 0.28
Matches are distributed among these distances:
26 1 0.01
27 4 0.05
28 13 0.16
29 2 0.02
30 1 0.01
31 2 0.02
32 2 0.02
33 17 0.21
34 32 0.40
35 7 0.09
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (34 bp):
AGGCCCAGTTAACTCTGATTTCTGAATAGGGCTT
Found at i:51131424 original size:39 final size:40
Alignment explanation
Indices: 51131324--51131508 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
51131314 TCGAATGATG
* * * * *
51131324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
51131364 TCCG-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGAG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51131404 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51131443 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
51131484 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGAGCTAAGTCCCGAAGGCATTTG
51131509 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51131530 original size:79 final size:79
Alignment explanation
Indices: 51131377--51131541 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
51131367 GGACTAAGAT
* * **
51131377 CCGAAGGCATTTGTGCGAGTTACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
51131442 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
51131456 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
51131519 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51131535 CCGAAGG
1 CCGAAGG
51131542 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51139125 original size:47 final size:47
Alignment explanation
Indices: 51139054--51139521 Score: 759
Period size: 47 Copynumber: 10.1 Consensus size: 47
51139044 TGAATGATAG
51139054 TAAGGCCTAATGGCCGA---GATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51139098 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51139145 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51139192 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51139237 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51139284 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51139331 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51139378 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51139425 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
51139471 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51139518 TAAG
1 TAAG
51139522 TCCCGAAGGG
Statistics
Matches: 401, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
44 17 0.04
45 44 0.11
46 40 0.10
47 300 0.75
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51139259 original size:22 final size:22
Alignment explanation
Indices: 51139187--51139259 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
51139177 AGTGTATATG
51139187 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
* *** ***
51139209 TGTGATGAATGTGAAAGT-GTATA
1 TGTGAT-AAGGCCTAA-TAGCCGA
51139232 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
51139254 TGTGAT
1 TGTGAT
51139260 GAATGTGAAA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGATAAGGCCTAATAGCCGA
Done.