Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 15 of 295
Found at i:4524226 original size:10 final size:11
Alignment explanation
Indices: 4524212--4524237 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4524202 ATAAAAGTAA
4524212 AAAAAAAAACT
1 AAAAAAAAACT
4524223 AAAAAAAAACT
1 AAAAAAAAACT
4524234 AAAA
1 AAAA
4524238 TTGATGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAAACT
Found at i:4524535 original size:24 final size:26
Alignment explanation
Indices: 4524474--4524524 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4524464 AAGTAACGTA
* *
4524474 ATAAAATATTAAATACTATACTATAT
1 ATAAGATATTAAATACTATACCATAT
4524500 ATAAGATATTAAGATA-TATACCATA
1 ATAAGATATTAA-ATACTATACCATA
4524525 ATAGGTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (26 bp):
ATAAGATATTAAATACTATACCATAT
Found at i:4524962 original size:23 final size:23
Alignment explanation
Indices: 4524934--4524981 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
4524924 CACACATAAG
*
4524934 TAAATAAAATATAAT-AATAATAC
1 TAAATAAAATA-AATAAAAAATAC
*
4524957 TAAATAAAGTAAATAAAAAATAC
1 TAAATAAAATAAATAAAAAATAC
4524980 TA
1 TA
4524982 TATATGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAATAAAATAAATAAAAAATAC
Found at i:4525050 original size:25 final size:25
Alignment explanation
Indices: 4525017--4525066 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4525007 AAAAAATGTG
* *
4525017 ATATAAAAACCATATGTACATAATA
1 ATATAAAAAACATATATACATAATA
* *
4525042 ATATGAAAAACATATATATATAATA
1 ATATAAAAAACATATATACATAATA
4525067 TAACATTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.30
Consensus pattern (25 bp):
ATATAAAAAACATATATACATAATA
Found at i:4525235 original size:13 final size:13
Alignment explanation
Indices: 4525217--4525241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4525207 ACTACTACTA
4525217 ATAATAATAATAT
1 ATAATAATAATAT
4525230 ATAATAATAATA
1 ATAATAATAATA
4525242 AGGATAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:4525407 original size:25 final size:26
Alignment explanation
Indices: 4525374--4525422 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
4525364 TAAAGGATGT
4525374 ATAACTAATGATAC-TAAAATATATGC
1 ATAACTAAT-ATACGTAAAATATATGC
4525400 ATAA-TAATATACGTAAAATATAT
1 ATAACTAATATACGTAAAATATAT
4525423 ACACAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.33
Consensus pattern (26 bp):
ATAACTAATATACGTAAAATATATGC
Found at i:4525430 original size:25 final size:25
Alignment explanation
Indices: 4525379--4525430 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
4525369 GATGTATAAC
* *
4525379 TAATGATACTAAAATATATGCATAA
1 TAATGATACTAAAATATATACACAA
4525404 TAAT-ATACGTAAAATATATACACAA
1 TAATGATAC-TAAAATATATACACAA
4525429 TA
1 TA
4525431 TAGTTATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.31
Consensus pattern (25 bp):
TAATGATACTAAAATATATACACAA
Found at i:4529802 original size:21 final size:21
Alignment explanation
Indices: 4529777--4529826 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
4529767 TTTTGAAAAG
4529777 TTAGTTTTATTTTATCTTAAT
1 TTAGTTTTATTTTATCTTAAT
*
4529798 TTAGTTTTATTTTATCTTATT
1 TTAGTTTTATTTTATCTTAAT
*
4529819 TTAATTTT
1 TTAGTTTT
4529827 TAAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (21 bp):
TTAGTTTTATTTTATCTTAAT
Found at i:4529817 original size:10 final size:10
Alignment explanation
Indices: 4529783--4529821 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
4529773 AAAGTTAGTT
4529783 TTATTTTATC
1 TTATTTTATC
* *
4529793 TTAATTTAGTT
1 TTATTTTA-TC
4529804 TTATTTTATC
1 TTATTTTATC
4529814 TTATTTTA
1 TTATTTTA
4529822 ATTTTTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (10 bp):
TTATTTTATC
Found at i:4543339 original size:33 final size:31
Alignment explanation
Indices: 4543297--4543381 Score: 120
Period size: 29 Copynumber: 2.7 Consensus size: 31
4543287 AAAGAGGTGG
4543297 AGAACTTGTTCGTTGAGAGTTCGCGAGCGATGA
1 AGAACTTGTTCGTTGAGAGTTCGC--GCGATGA
4543330 AGAACTTGTTCGTTGAGAGTT--CGCGATGA
1 AGAACTTGTTCGTTGAGAGTTCGCGCGATGA
* *
4543359 AGAACTTGTTCATTGAGAATTCG
1 AGAACTTGTTCGTTGAGAGTTCG
4543382 TGTTAAGATG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
29 26 0.54
31 1 0.02
33 21 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (31 bp):
AGAACTTGTTCGTTGAGAGTTCGCGCGATGA
Found at i:4544543 original size:18 final size:19
Alignment explanation
Indices: 4544515--4544563 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
4544505 AATAGAAATT
*
4544515 AAAAACTAAAAATAAA-AC
1 AAAAACAAAAAATAAACAC
*
4544533 AAAAATAAAAAA-AAACAC
1 AAAAACAAAAAATAAACAC
*
4544551 ACAAACAAAAAAT
1 AAAAACAAAAAAT
4544564 CCAAATGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.80, C:0.12, G:0.00, T:0.08
Consensus pattern (19 bp):
AAAAACAAAAAATAAACAC
Found at i:4558094 original size:75 final size:74
Alignment explanation
Indices: 4558010--4558381 Score: 288
Period size: 75 Copynumber: 4.9 Consensus size: 74
4558000 TCATTTTTGT
*
4558010 TTTCAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 TTTCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTT
*
4558075 TAGATT-CTAC
65 CA-ATTACTAC
* * * ** * *
4558085 TTTCAAAAAAATCAACTCATATTGAGAAAGGTGAGTTGAGCCTTGGCTCACG-TGTTGAGTCA-C
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG-AG-GT-ATT
*
4558148 TTTCAATTTCTGTTTTTATGTC
62 TTTCAATTAC------TA---C
**** * *
4558170 TGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAGGTA-TTTT
1 T-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTT
* **
4558234 CAATTATTGT
65 CAATTACTAC
*
4558244 TTGTCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTT
1 TT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
**
4558308 TCAATTACTGT
64 TCAATTACTAC
* * * * *
4558319 TTGTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCTTCAGGACATGCTGAGGTATTTT
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
4558382 CGATTTCTGT
Statistics
Matches: 238, Mismatches: 40, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
73 49 0.21
74 6 0.03
75 102 0.43
76 22 0.09
77 2 0.01
82 2 0.01
83 9 0.04
84 2 0.01
85 40 0.17
86 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTC
AATTACTAC
Found at i:4558373 original size:73 final size:73
Alignment explanation
Indices: 4558178--4558398 Score: 325
Period size: 75 Copynumber: 3.0 Consensus size: 73
4558168 TCTGTTTTCT
* *
4558178 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAGGTATTTTCAATTATTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
4558243 TTTGTCAAAA
66 TTTGTC--AA
* *
4558253 AAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
4558318 TTTGTCAA
66 TTTGTCAA
* * * * * *
4558326 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCTTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
*
4558391 TTTTTCAA
66 TTTGTCAA
4558399 TTTATGTTTT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
73 66 0.50
75 67 0.50
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
TTTGTCAA
Found at i:4558513 original size:74 final size:74
Alignment explanation
Indices: 4558392--4558601 Score: 366
Period size: 74 Copynumber: 2.8 Consensus size: 74
4558382 CGATTTCTGT
*
4558392 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCGCAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCACAT
4558457 AACAAGGCA
66 AACAAGGCA
4558466 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCACAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCACAT
* * *
4558531 AGCGAGGTA
66 AACAAGGCA
* *
4558540 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCA
4558602 TACGCCGATG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 130 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCACAT
AACAAGGCA
Found at i:4558615 original size:74 final size:73
Alignment explanation
Indices: 4558392--4558630 Score: 363
Period size: 74 Copynumber: 3.2 Consensus size: 73
4558382 CGATTTCTGT
4558392 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCGCAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTC-CAT
* * *
4558457 AACAAGGCA
65 AGCGAGGTA
4558466 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCACAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTC-CAT
4558531 AGCGAGGTA
65 AGCGAGGTA
* *
4558540 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGT-CATA
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCCATA
*
4558604 CGCCGATGTA
66 -G-CGAGGTA
**
4558614 TTTTCAATAGATGTTTT
1 TTTTCAATTTATGTTTT
4558631 TTTTCAATTT
Statistics
Matches: 154, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
72 4 0.03
73 1 0.01
74 149 0.97
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37
Consensus pattern (73 bp):
TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCCATA
GCGAGGTA
Found at i:4558786 original size:80 final size:80
Alignment explanation
Indices: 4558650--4558945 Score: 254
Period size: 89 Copynumber: 3.5 Consensus size: 80
4558640 TCTGCTTCTC
* * * * * *
4558650 AAAAAAATTAACTCATATTGCGAAAGGTGAGTTGAGACTTGGCTTACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGGTATTTTCAA
4558715 GTTCTTCTTTTCAA-A
66 -TTCTTCTTTTCAATA
* * *
4558730 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCGCACGTTGAGGTTTTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGGTATTTTCAA
*
4558795 TT-TTTTTTTCAATTTA
66 TTCTTCTTTTCAA--TA
* * *
4558811 TGCTTTTCAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACATGTCGAGGT
1 --------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGGT
* *
4558876 ATTTTCAAAATCTGCTTTTCAAATTA
58 ATTTTC-AATTCTTCTTTTC-AA-TA
* *
4558902 AGTTTCAAAAAACCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4558946 TAGCTTACAT
Statistics
Matches: 175, Mismatches: 22, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
78 9 0.05
79 2 0.01
80 56 0.32
81 1 0.01
83 1 0.01
88 35 0.20
89 57 0.33
90 3 0.02
91 9 0.05
92 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (80 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGGTATTTTCAA
TTCTTCTTTTCAATA
Found at i:4558836 original size:169 final size:170
Alignment explanation
Indices: 4558466--4558945 Score: 464
Period size: 169 Copynumber: 2.8 Consensus size: 170
4558456 TAACAAGGCA
* * *
4558466 TTTTCAATTTATG-TTTTC--AAAAATCAATTCATATTGCTAAAGGTGAATTGAGCCTCGGGTCA
1 TTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCA
* * * *
4558528 CATAGCGAGGTATTTTCAATT-TATGTTTTC-----AAAAATCAATTCATATTGCTAGAGGTGAA
66 CA-AGCGAGGTATTTTCAATTCT-TCTTTTCAAAAAAAAAATCAACTCATATTGCAAGAGGTGAG
* *
4558587 TTGAGCCTCAGGTCATACGCCGATGTATTTTCAATAGATGTTTT
129 TTGAGCCTCAGGTCACACGCCGAGGTATTTTC-A-AGATGTTTT
* * * * * * *
4558631 TTTTCAATTTCTGCTTCTCAAAAAAATTAACTCATATTGCGAAAGGTGAGTTGAGACTTGGCTTA
1 TTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCA
* *
4558696 CACGCCGAGGTATTTTCAAGTTCTTCTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
66 CAAG-CGAGGTATTTTCAA-TTCTTCTTTTCAAAAAAAAAATCAACTCATATTGCAAGAGGTGAG
* ** *
4558761 TTGAGCCTC-GGCTCGCACGTTGAGGTTTTTTC-A-AT-TTTT
129 TTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAAGATGTTTT
* *
4558800 TTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCA
* * * *
4558865 CATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAACCAACTCATATTGCAA
66 CAAG-CGAGGTATTTTC-AATTCTTCTTTTC-AA--AA-----AAAAAATCAACTCATATTGCAA
4558930 GAGGTGAGTTGAGCCT
121 GAGGTGAGTTGAGCCT
4558946 TAGCTTACAT
Statistics
Matches: 258, Mismatches: 36, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
165 12 0.05
166 4 0.02
167 1 0.00
168 52 0.20
169 92 0.36
170 7 0.03
171 1 0.00
172 2 0.01
173 2 0.01
174 49 0.19
177 36 0.14
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (170 bp):
TTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCA
CAAGCGAGGTATTTTCAATTCTTCTTTTCAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTT
GAGCCTCAGGTCACACGCCGAGGTATTTTCAAGATGTTTT
Found at i:4558956 original size:88 final size:88
Alignment explanation
Indices: 4558730--4558945 Score: 274
Period size: 89 Copynumber: 2.4 Consensus size: 88
4558720 TCTTTTCAAA
* * * *
4558730 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCGCACGTTGAGGTTTTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGGTATTTTCAA
* ** * *
4558795 TTTTTTTTTCAATTTATGCTTTTC
66 TCTGCTTTTCAAATTAAGC-TTTC
* *
4558819 AAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGGTATTTTC--
4558884 AATCTGCTTTTCAAATTAAG-TTTC
64 AATCTGCTTTTCAAATTAAGCTTTC
* *
4558908 -AAAAAACCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4558946 TAGCTTACAT
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
88 35 0.32
89 61 0.55
91 15 0.14
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (88 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGGTATTTTCAA
TCTGCTTTTCAAATTAAGCTTTC
Found at i:4559199 original size:52 final size:52
Alignment explanation
Indices: 4559143--4559320 Score: 178
Period size: 52 Copynumber: 3.3 Consensus size: 52
4559133 AAGATCGAAA
*
4559143 CTACAAATCTCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGG
1 CTACAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGG
* * * * ** **
4559195 CTACAAATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAATAG-AGAAGATCGAAA
1 CTACAAATCCCTTCTCCCTGAA-TC----TCC--GAAGTTTCAGT-GTAGTAGGCCGAGG
* *
4559254 CTACAAATCTCTTCTCCCTGAATCTCTGAAGTTTCAGTGTAGTAGGCCGAGG
1 CTACAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGG
4559306 CTACAAATCCCTTCT
1 CTACAAATCCCTTCT
4559321 ACTTGAATTC
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
51 1 0.01
52 50 0.52
53 2 0.02
54 2 0.02
57 3 0.03
58 2 0.02
59 36 0.37
60 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (52 bp):
CTACAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGG
Found at i:4559285 original size:111 final size:111
Alignment explanation
Indices: 4559090--4559396 Score: 544
Period size: 111 Copynumber: 2.8 Consensus size: 111
4559080 CAAATTTTAT
4559090 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
4559155 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
*
4559201 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAATAGAGAAGATCGAAACTACAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
*
4559266 TCTCCCTGAATCTCTGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
** *
4559312 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTT-AGTAGAGAAGATCGAGGCTACAAATATCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
* *
4559376 TCTCCCTCAATCTCGGAAGTT
66 TCTCCCTGAATCTCCGAAGTT
4559397 CTAGTGGAGT
Statistics
Matches: 188, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 44 0.23
111 144 0.77
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (111 bp):
ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
Found at i:4560374 original size:16 final size:16
Alignment explanation
Indices: 4560353--4560383 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
4560343 CCTTTTCAAA
4560353 ATTTTTTTTAAAAAAT
1 ATTTTTTTTAAAAAAT
4560369 ATTTTTTTTAAAAAA
1 ATTTTTTTTAAAAAA
4560384 AACAAGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTTTTTAAAAAAT
Found at i:4569987 original size:30 final size:30
Alignment explanation
Indices: 4569953--4570028 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
4569943 ATACTAAATA
*
4569953 AAATAATAA-AATAATAATAAATATCTTATT
1 AAATAATAATAA-AATAATAAATATCTAATT
* ** *
4569983 AAATATTAATAAAATAATATTTTTCTAATT
1 AAATAATAATAAAATAATAAATATCTAATT
*
4570013 AAATAATTATAAAATA
1 AAATAATAATAAAATA
4570029 TCAACATCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATAATAATAAAATAATAAATATCTAATT
Found at i:4574818 original size:11 final size:11
Alignment explanation
Indices: 4574802--4574826 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4574792 CACTAGCGAG
4574802 ATGCTTAAAAA
1 ATGCTTAAAAA
4574813 ATGCTTAAAAA
1 ATGCTTAAAAA
4574824 ATG
1 ATG
4574827 TATATATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (11 bp):
ATGCTTAAAAA
Found at i:4580293 original size:3 final size:3
Alignment explanation
Indices: 4580285--4580310 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4580275 ATCCATTTCC
4580285 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
4580311 GGATTTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:4580862 original size:19 final size:18
Alignment explanation
Indices: 4580838--4580873 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
4580828 AACCATGTGA
4580838 CCCACACGGCCTGAGCCAT
1 CCCACACGGCCT-AGCCAT
*
4580857 CCCACATGGCCTAGCCA
1 CCCACACGGCCTAGCCA
4580874 CACAACCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.47, G:0.19, T:0.11
Consensus pattern (18 bp):
CCCACACGGCCTAGCCAT
Found at i:4585783 original size:8 final size:8
Alignment explanation
Indices: 4585772--4585820 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
4585762 TTTAATCCTT
4585772 TAAAAATA
1 TAAAAATA
4585780 TAAAAATA
1 TAAAAATA
4585788 TAAAAATA
1 TAAAAATA
*
4585796 T-AAATTA
1 TAAAAATA
4585803 TTAAAAA-A
1 -TAAAAATA
*
4585811 TAAAATTA
1 TAAAAATA
4585819 TA
1 TA
4585821 CTTTTAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
7 10 0.29
8 22 0.63
9 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
TAAAAATA
Found at i:4585793 original size:16 final size:16
Alignment explanation
Indices: 4585772--4585820 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
4585762 TTTAATCCTT
*
4585772 TAAAAATATAAAAATA
1 TAAAAATATAAAATTA
4585788 TAAAAATAT-AAATTA
1 TAAAAATATAAAATTA
4585803 TTAAAAA-ATAAAATTA
1 -TAAAAATATAAAATTA
4585819 TA
1 TA
4585821 CTTTTAGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.30
16 21 0.70
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAATATAAAATTA
Found at i:4587284 original size:22 final size:21
Alignment explanation
Indices: 4587252--4587297 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
4587242 GAGTTTTTAA
4587252 ATTTTATAAATAAAAT-AAAT
1 ATTTTATAAATAAAATAAAAT
*
4587272 ATTTTATAAAAATATAATAAAAT
1 ATTTTAT--AAATAAAATAAAAT
4587295 ATT
1 ATT
4587298 AATAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
22 8 0.36
23 7 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTTTATAAATAAAATAAAAT
Found at i:4587302 original size:22 final size:22
Alignment explanation
Indices: 4587259--4587308 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
4587249 TAAATTTTAT
*
4587259 AAATAAAATAAATATTTTATAA
1 AAATAAAATAAATATTTAATAA
*
4587281 AAATATAATAAA-ATATTAAT-A
1 AAATAAAATAAATAT-TTAATAA
4587302 AAATAAA
1 AAATAAA
4587309 TATTACAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATAAAATAAATATTTAATAA
Found at i:4587663 original size:23 final size:24
Alignment explanation
Indices: 4587637--4587699 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 24
4587627 CCTAATTTAA
**
4587637 ATTTAATTTTTAAAATTT-GAATT
1 ATTTAATTGATAAAATTTAGAATT
*
4587660 ATTTAA-TGATAATATTTAGAATT
1 ATTTAATTGATAAAATTTAGAATT
*
4587683 ATTTAA-TGATAATATTT
1 ATTTAATTGATAAAATTT
4587700 TTAAAAAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 8 0.22
23 28 0.78
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.52
Consensus pattern (24 bp):
ATTTAATTGATAAAATTTAGAATT
Found at i:4587677 original size:13 final size:13
Alignment explanation
Indices: 4587659--4587699 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
4587649 AAATTTGAAT
4587659 TATTTAATGATAA
1 TATTTAATGATAA
*
4587672 TATTT-A-GA-AT
1 TATTTAATGATAA
4587682 TATTTAATGATAA
1 TATTTAATGATAA
4587695 TATTT
1 TATTT
4587700 TTAAAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 6 0.26
11 3 0.13
12 3 0.13
13 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (13 bp):
TATTTAATGATAA
Found at i:4593163 original size:15 final size:15
Alignment explanation
Indices: 4593143--4593175 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4593133 TTCGCTGGTA
*
4593143 AATTTCCCCCTCTAC
1 AATTTCCCCCTCCAC
4593158 AATTTCCCCCTCCAC
1 AATTTCCCCCTCCAC
4593173 AAT
1 AAT
4593176 AATCACTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.45, G:0.00, T:0.30
Consensus pattern (15 bp):
AATTTCCCCCTCCAC
Found at i:4593390 original size:11 final size:13
Alignment explanation
Indices: 4593365--4593397 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
4593355 CCGTAACAAA
4593365 AGCAAAAATGAAT
1 AGCAAAAATGAAT
4593378 AG-AAAAATG-AT
1 AGCAAAAATGAAT
4593389 AGCAAAAAT
1 AGCAAAAAT
4593398 TAGATGCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.21
12 13 0.68
13 2 0.11
ACGTcount: A:0.64, C:0.06, G:0.15, T:0.15
Consensus pattern (13 bp):
AGCAAAAATGAAT
Found at i:4602132 original size:59 final size:59
Alignment explanation
Indices: 4602061--4602179 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
4602051 TCTATAAATC
4602061 TTCAAACTCTTAAATAAGAGAGATAATACATGTTTAAGTACAAACCCATGTCTTCATAA
1 TTCAAACTCTTAAATAAGAGAGATAATACATGTTTAAGTACAAACCCATGTCTTCATAA
4602120 TTCAAACTCTTAAATAAGAGAGATAATACATGTTTAAGTACAAACCCATGTCTTCATAA
1 TTCAAACTCTTAAATAAGAGAGATAATACATGTTTAAGTACAAACCCATGTCTTCATAA
4602179 T
1 T
4602180 GATAGCAACA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (59 bp):
TTCAAACTCTTAAATAAGAGAGATAATACATGTTTAAGTACAAACCCATGTCTTCATAA
Found at i:4607031 original size:31 final size:31
Alignment explanation
Indices: 4606973--4607031 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
4606963 AGTTTATTTC
* * *
4606973 TCTAAAAATGATAAAATTTTAATTTAATCAT
1 TCTAAAAATGATAAAAATGTAAGTTAATCAT
4607004 TCTAAAAACT-ATAAAAATGTAAGTTAAT
1 TCTAAAAA-TGATAAAAATGTAAGTTAAT
4607032 ATATTAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 23 0.96
32 1 0.04
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (31 bp):
TCTAAAAATGATAAAAATGTAAGTTAATCAT
Found at i:4607846 original size:34 final size:33
Alignment explanation
Indices: 4607773--4607838 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
4607763 GCTATAAAAG
4607773 CCATCAAAACACAATGTAGAAGGGACTTTTTTT
1 CCATCAAAACACAATGTAGAAGGGACTTTTTTT
4607806 CCATCAAAACACAATGTAGAAGGGACTTTTTTT
1 CCATCAAAACACAATGTAGAAGGGACTTTTTTT
4607839 TTCATCAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (33 bp):
CCATCAAAACACAATGTAGAAGGGACTTTTTTT
Found at i:4608087 original size:13 final size:13
Alignment explanation
Indices: 4608069--4608093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4608059 CCACCGTGCG
4608069 CGGTGGCCGGCGA
1 CGGTGGCCGGCGA
4608082 CGGTGGCCGGCG
1 CGGTGGCCGGCG
4608094 GTGGGCGACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.56, T:0.08
Consensus pattern (13 bp):
CGGTGGCCGGCGA
Found at i:4608651 original size:3 final size:3
Alignment explanation
Indices: 4608637--4608873 Score: 63
Period size: 3 Copynumber: 76.3 Consensus size: 3
4608627 AAATTAATGA
* ** *
4608637 ATT ATAT ATT ATT ATT ATT ATT ATT ATT CTT GCT GTT ATCT -TT ATT
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * * * * *
4608683 ACT ATT ACT ATT GTT ATT ACT ACTT CCATT ATT TTT ATT -TCT AACT
1 ATT ATT ATT ATT ATT ATT ATT A-TT --ATT ATT ATT ATT AT-T -ATT
* * * * *
4608729 ATT ATT TTT ATGT ATAT ATT ATT ATT -TGT ATC ATC GTT ATT ATT ACT
1 ATT ATT ATT AT-T AT-T ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
* * * * *
4608776 ATT ATT AAAT ATCT -TT ATT ATT ACT ATT ATT TTT GTT CCTT -TT ATT
1 ATT ATT -ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
* * * * **
4608822 ATT GTTT ATC ATC ATT A-T ATT ATT ATT ATT ACT CCT ATT ATT ATT
1 ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
4608867 ATC ATT A
1 ATT ATT A
4608874 CTTCTTTTTT
Statistics
Matches: 172, Mismatches: 43, Indels: 38
0.68 0.17 0.15
Matches are distributed among these distances:
2 8 0.05
3 141 0.82
4 20 0.12
5 2 0.01
6 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:4621510 original size:43 final size:44
Alignment explanation
Indices: 4621434--4621549 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 44
4621424 AGCGAATCCT
* * * * * * * *
4621434 ATCTTCCTGAAGCCTCAGTGAAGCAAATTGAAGTCACTAGCCTT
1 ATCTCCCTGAAGTCACAGTGGAGCAGACTGAAGTCACAAGCCTC
* *
4621478 ATCTCCCTGAAGT-ACAGTGGAGCAGACTGAAGTTACAAGTCTC
1 ATCTCCCTGAAGTCACAGTGGAGCAGACTGAAGTCACAAGCCTC
* *
4621521 ATCTCCTTGAAGTCGCAGTGGAGCAGACT
1 ATCTCCCTGAAGTCACAGTGGAGCAGACT
4621550 AAATGTACAG
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 34 0.58
44 25 0.42
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (44 bp):
ATCTCCCTGAAGTCACAGTGGAGCAGACTGAAGTCACAAGCCTC
Found at i:4622174 original size:41 final size:41
Alignment explanation
Indices: 4622078--4622228 Score: 257
Period size: 41 Copynumber: 3.7 Consensus size: 41
4622068 GCTAAAAACC
* *
4622078 ACAGCAGATCTCTTTGAAGTTTCAGTGGAATTGATCGAAGCT
1 ACAGCAGATCTCCTTGAAGTTTCAGTGG-ATTAATCGAAGCT
*
4622120 ACAGCAGACCTCCTTGAAGTTTCAGTGGATTAATCGAAGCT
1 ACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCGAAGCT
*
4622161 ACAACAGATCTCCTTGAAGTTTCAGTGGATTAATCGAAGCT
1 ACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCGAAGCT
4622202 ACAGCAGATCTCCTTGAAGTTTCAGTG
1 ACAGCAGATCTCCTTGAAGTTTCAGTG
4622229 AAATTGATTG
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 77 0.75
42 26 0.25
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (41 bp):
ACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCGAAGCT
Found at i:4623065 original size:13 final size:13
Alignment explanation
Indices: 4623047--4623072 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4623037 TACCTTTCGA
4623047 ACGGTGGCCGGCG
1 ACGGTGGCCGGCG
4623060 ACGGTGGCCGGCG
1 ACGGTGGCCGGCG
4623073 GTGGGCGACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.54, T:0.08
Consensus pattern (13 bp):
ACGGTGGCCGGCG
Found at i:4623624 original size:3 final size:3
Alignment explanation
Indices: 4623610--4623852 Score: 84
Period size: 3 Copynumber: 78.3 Consensus size: 3
4623600 AAATTAATGA
* ** *
4623610 ATT ATAT ATT ATT ATT ATT ATT ATT ATT ATT ATT CTT GCT GTT ATCT
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* * * * *
4623657 -TT ATT ACT ATT ACT ATT GTT ATT ACT ACTT CCATT ATT TTT ATT -TCT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT --ATT ATT ATT ATT AT-T
* * * *
4623704 AACT ATT ATT TTT ATGT ATAT ATT ATT ATT -TGT ATC ATT GTT ATT ATT
1 -ATT ATT ATT ATT AT-T AT-T ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* * * * * *
4623752 ACT ATT ATT AAAT ATCT -TT ATT ATT ACT ATT ATT TTT GTT CCTT -TT
1 ATT ATT ATT -ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
* * * * **
4623798 ATT ATT GTTT ATC ATC ATT A-T ATT ATT ATT ATT ACT CCT ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
4623843 ATT ATC ATT A
1 ATT ATT ATT A
4623853 CTTCTTTTTT
Statistics
Matches: 178, Mismatches: 43, Indels: 38
0.69 0.17 0.15
Matches are distributed among these distances:
2 8 0.04
3 147 0.83
4 20 0.11
5 2 0.01
6 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:4625371 original size:22 final size:22
Alignment explanation
Indices: 4625346--4625388 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
4625336 TATCTAAACA
4625346 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
4625368 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
4625389 AATAGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:4625401 original size:11 final size:11
Alignment explanation
Indices: 4625353--4625394 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
4625343 ACAATAACAA
4625353 CAAAATAGTAG
1 CAAAATAGTAG
* *
4625364 CAACATAATAG
1 CAAAATAGTAG
*
4625375 TAAAATAGTAG
1 CAAAATAGTAG
4625386 CAAAATAGT
1 CAAAATAGT
4625395 GAGAAAACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:4627672 original size:17 final size:16
Alignment explanation
Indices: 4627621--4627672 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
4627611 CTAATCGAAA
*
4627621 AAGAAG-AAAATGAAG
1 AAGAAGAAAAAAGAAG
* * *
4627636 GAGAAGAAAAACGAAA
1 AAGAAGAAAAAAGAAG
4627652 AAGAAGGAAAAAAGAAG
1 AAGAA-GAAAAAAGAAG
4627669 AAGA
1 AAGA
4627673 GAAGTTCAGC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 5 0.17
16 11 0.38
17 13 0.45
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (16 bp):
AAGAAGAAAAAAGAAG
Found at i:4634973 original size:24 final size:25
Alignment explanation
Indices: 4634946--4635017 Score: 96
Period size: 24 Copynumber: 3.0 Consensus size: 25
4634936 ATAGGGTAGG
4634946 ATCTGTGAT-TGCATCTGTATCTGA
1 ATCTGTGATATGCATCTGTATCTGA
* * *
4634970 ATCTGTG-TATGCATTTGTATATAA
1 ATCTGTGATATGCATCTGTATCTGA
4634994 ATCTG-GATATGCATCTGTATCTGA
1 ATCTGTGATATGCATCTGTATCTGA
4635018 TTATGAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 2 0.05
24 38 0.95
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (25 bp):
ATCTGTGATATGCATCTGTATCTGA
Found at i:4635046 original size:24 final size:24
Alignment explanation
Indices: 4635019--4635074 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
4635009 TGTATCTGAT
* *
4635019 TATGAAAATACATTTGATTCTGTA
1 TATGAAAATACATTTGAATATGTA
* *
4635043 TATGAGAATATATTTGAATATGTA
1 TATGAAAATACATTTGAATATGTA
*
4635067 TCTGAAAA
1 TATGAAAA
4635075 CCTATCTACT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.39
Consensus pattern (24 bp):
TATGAAAATACATTTGAATATGTA
Found at i:4637472 original size:6 final size:6
Alignment explanation
Indices: 4637461--4637499 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
4637451 TGGTAGGATT
* * *
4637461 TGTATC TGTATC TGCATC TGCATC TGCATC TGTATC TGT
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGT
4637500 TACTATGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (6 bp):
TGTATC
Found at i:4637485 original size:12 final size:12
Alignment explanation
Indices: 4637464--4637498 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
4637454 TAGGATTTGT
4637464 ATCTGTATCTGC
1 ATCTGTATCTGC
*
4637476 ATCTGCATCTGC
1 ATCTGTATCTGC
4637488 ATCTGTATCTG
1 ATCTGTATCTG
4637499 TTACTATGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (12 bp):
ATCTGTATCTGC
Found at i:4642046 original size:102 final size:102
Alignment explanation
Indices: 4641898--4642275 Score: 506
Period size: 102 Copynumber: 3.7 Consensus size: 102
4641888 GCTCATGTGC
* * * * ** * * * *
4641898 TGGAGGCTCATAAACTGGTGGTTTAGGTTTTGGCTTT-TCTTCCTTTGGTGGTGCATAAACTGGT
1 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGG-TTTCTCTTTCTTTGGAGGTGTATAAACCGGT
* * * * * * * * *
4641962 GGCTTAGGTGGTTTTGGCTCATATATTGGTGGGTTGTT
65 GGCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
* * * * *
4642000 GGGAGGTTGATACATTGGTGGCTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
4642065 GCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
66 GCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
4642102 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
*
4642167 GTTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
66 GCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
*
4642204 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
4642269 GCTTTGG
66 GCTTTGG
4642276 CTCGGGCTTC
Statistics
Matches: 246, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
101 3 0.01
102 243 0.99
ACGTcount: A:0.13, C:0.12, G:0.33, T:0.42
Consensus pattern (102 bp):
TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
GCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
Found at i:4642167 original size:45 final size:45
Alignment explanation
Indices: 4642118--4642566 Score: 358
Period size: 45 Copynumber: 9.7 Consensus size: 45
4642108 TTCATACATT
*
4642118 GGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACC
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
* * *
4642163 GGTGGTTTTGGTGGCTT-AGG-TTCGTACATTGGAGGTTTTTTTGGAGGT-TCATACACT
1 GGTGG-TTT-G-GG-TTCAGGCTTC-T-C--------TTTCTTTGGAGGTGT-ATAAACC
*
4642220 GGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACC
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
* * * * *
4642265 GGTGGCTTT-GGCTCGGGCTTCTCCTTCTTTGGAGGT-TCATATACG
1 GGTGG-TTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGT-ATAAACC
* *
4642310 GGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAATC
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
* * * * * *
4642355 GGTGGTTTTGGCTCAGGTTTCTCCTTCTTTGGAGGT-TCATATACT
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGT-ATAAACC
* * * *
4642400 GGTGGTTTAGGTTTAGGCTCCTCTTTCTTTGGAGGTGTATAAACT
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
* * * **
4642445 GGTGGCTTT-GGCTCAGGCTTCTCCTTCTTTGGAGGT-TCATACATT
1 GGTGG-TTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGT-ATAAACC
* * *
4642490 GGTGGTTTGGGTCCATGCTTCTCTTTCTTTGGAGGTGCATAAACC
1 GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
* *
4642535 GGTGGCTTAGGTTCAGGCTTCTCCTTT-TTTGG
1 GGTGGTTTGGGTTCAGGCTTCT-CTTTCTTTGG
4642567 TGGTTCATAC
Statistics
Matches: 325, Mismatches: 50, Indels: 58
0.75 0.12 0.13
Matches are distributed among these distances:
44 9 0.03
45 248 0.76
46 16 0.05
47 4 0.01
48 6 0.02
49 3 0.01
53 3 0.01
54 6 0.02
55 4 0.01
56 4 0.01
57 22 0.07
ACGTcount: A:0.12, C:0.16, G:0.30, T:0.42
Consensus pattern (45 bp):
GGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACC
Found at i:4642297 original size:102 final size:100
Alignment explanation
Indices: 4641898--4642365 Score: 451
Period size: 102 Copynumber: 4.7 Consensus size: 100
4641888 GCTCATGTGC
* * * ** * * * *
4641898 TGGAGGCTCATAAACTGGTGGTTTAGGTTTTGGCTTT-TCTTCCTTTGGTGGTGCATAAACTGGT
1 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGG-TTTCTCTTTCTTTGGAGGTGTATAAACCGGT
* * * * * * *
4641962 GGCTTAGGTGGTTTTGGCTCATATATTGGTGGGTTGTT
65 GGCTTTGGTGG-CTT-GCTCCTACATTGGAGGTTTTTT
* * * * * *
4642000 GGGAGGTTGATACATTGGTGGCTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
* *
4642065 GCTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
66 GCTTTGGTGGCTT--GCTCCTACATTGGAGGTTTTTT
*
4642102 TGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
* * *
4642167 GTTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTT
66 GCTTTGGTGGCTT--GCTCCTACATTGGAGGTTTTTT
4642204 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
1 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
*
4642269 GCTTTGGCTCGGGCTT-CT-C--C---------TTCTT
66 GCTTTGG-T--GGCTTGCTCCTACATTGGAGGTTTTTT
* * *
4642294 TGGAGGTTCATATACGGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAATCGGTG
1 TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
*
4642359 GTTTTGG
66 GCTTTGG
4642366 CTCAGGTTTC
Statistics
Matches: 326, Mismatches: 35, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
90 72 0.22
99 1 0.00
101 5 0.02
102 242 0.74
103 1 0.00
105 5 0.02
ACGTcount: A:0.13, C:0.12, G:0.33, T:0.42
Consensus pattern (100 bp):
TGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTG
GCTTTGGTGGCTTGCTCCTACATTGGAGGTTTTTT
Found at i:4642314 original size:90 final size:90
Alignment explanation
Indices: 4642202--4642594 Score: 579
Period size: 90 Copynumber: 4.4 Consensus size: 90
4642192 TGGAGGTTTT
*
4642202 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
1 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACCGG
*
4642267 TGGCTTTGGCTCGGGCTTCTCCTTC
66 TGGCTTTGGCTCAGGCTTCTCCTTC
* * * *
4642292 TTTGGAGGTTCATATACGGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAATCGG
1 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACCGG
* *
4642357 TGGTTTTGGCTCAGGTTTCTCCTTC
66 TGGCTTTGGCTCAGGCTTCTCCTTC
* * * * *
4642382 TTTGGAGGTTCATATACTGGTGGTTTAGGTTTAGGCTCCTCTTTCTTTGGAGGTGTATAAACTGG
1 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACCGG
4642447 TGGCTTTGGCTCAGGCTTCTCCTTC
66 TGGCTTTGGCTCAGGCTTCTCCTTC
* * * *
4642472 TTTGGAGGTTCATACATTGGTGGTTTGGGTCCATGCTTCTCTTTCTTTGGAGGTGCATAAACCGG
1 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACCGG
* * *
4642537 TGGCTTAGGTTCAGGCTTCTCCTTT
66 TGGCTTTGGCTCAGGCTTCTCCTTC
* * *
4642562 TTTGGTGGTTCATACACTGGTGGCTTAGGTTCA
1 TTTGGAGGTTCATACACTGGTGGTTTGGGTTCA
4642595 TATGGTGGTG
Statistics
Matches: 271, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 271 1.00
ACGTcount: A:0.13, C:0.17, G:0.29, T:0.41
Consensus pattern (90 bp):
TTTGGAGGTTCATACACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACCGG
TGGCTTTGGCTCAGGCTTCTCCTTC
Found at i:4642514 original size:180 final size:180
Alignment explanation
Indices: 4642100--4642594 Score: 657
Period size: 180 Copynumber: 2.7 Consensus size: 180
4642090 TGGAGGTTTT
4642100 TTTGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
1 TTTGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
* ** *
4642165 TGGTTTTGGTGGCTTAGGTTCGTACATTGGAGGTTTTTTTGGAGGTTCATACACTGGTGGTTTGG
66 TGG-TTT--TGGCTCAGGTT--T-C--T----CCTTTTTTGGAGGTTCATACACTGGTGGTTTAG
* * *
4642230 GTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGGTGGCTTTGGCTCGGGCTTCTCCTTC
119 GTTCAGGCTCCTCTTTCTTTGGAGGTGTATAAACCGGTGGCTTTGGCTCAGGCTTCTCCTTC
* ** *
4642292 TTTGGAGGTTCATATACGGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAATCGG
1 TTTGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
* * *
4642357 TGGTTTTGGCTCAGGTTTCTCCTTCTTTGGAGGTTCATATACTGGTGGTTTAGGTTTAGGCTCCT
66 TGGTTTTGGCTCAGGTTTCTCCTTTTTTGGAGGTTCATACACTGGTGGTTTAGGTTCAGGCTCCT
*
4642422 CTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGGCTTCTCCTTC
131 CTTTCTTTGGAGGTGTATAAACCGGTGGCTTTGGCTCAGGCTTCTCCTTC
* * * *
4642472 TTTGGAGGTTCATACATTGGTGGTTTGGGTCCATGCTTCTCTTTCTTTGGAGGTGCATAAACCGG
1 TTTGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
* * * * * *
4642537 TGGCTTAGGTTCAGGCTTCTCCTTTTTTGGTGGTTCATACACTGGTGGCTTAGGTTCA
66 TGGTTTTGGCTCAGGTTTCTCCTTTTTTGGAGGTTCATACACTGGTGGTTTAGGTTCA
4642595 TATGGTGGTG
Statistics
Matches: 271, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
180 191 0.70
184 1 0.00
186 1 0.00
187 1 0.00
189 10 0.04
191 3 0.01
192 64 0.24
ACGTcount: A:0.13, C:0.16, G:0.30, T:0.41
Consensus pattern (180 bp):
TTTGGAGGTTCATACATTGGTGGTTTGGGTTCAGGTTTCTCTTTCTTTGGAGGTGTATAAACCGG
TGGTTTTGGCTCAGGTTTCTCCTTTTTTGGAGGTTCATACACTGGTGGTTTAGGTTCAGGCTCCT
CTTTCTTTGGAGGTGTATAAACCGGTGGCTTTGGCTCAGGCTTCTCCTTC
Found at i:4646018 original size:26 final size:26
Alignment explanation
Indices: 4645974--4646046 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
4645964 TTACCATTTT
* *
4645974 ACATTATTATATTTATTATTTATTTCTA
1 ACATCATTATA-TT-TTATTTATTTATA
*
4646002 ACAT-ATTATTATTTTATTTTTTTATA
1 ACATCATTA-TATTTTATTTATTTATA
* *
4646028 TCATCATTATATTTAATTT
1 ACATCATTATATTTTATTT
4646047 GTGCTTATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 23 0.59
27 10 0.26
28 6 0.15
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (26 bp):
ACATCATTATATTTTATTTATTTATA
Found at i:4646443 original size:21 final size:22
Alignment explanation
Indices: 4646407--4646447 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4646397 ATATATTTTC
4646407 TTTTATATATTATGTATATGCA
1 TTTTATATATTATGTATATGCA
*
4646429 TTTTTTATA-TATGTATATG
1 TTTTATATATTATGTATATG
4646448 TTTATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (22 bp):
TTTTATATATTATGTATATGCA
Found at i:4646667 original size:15 final size:17
Alignment explanation
Indices: 4646647--4646679 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4646637 CCGTCACCTT
4646647 ACATAT-TAT-TATATA
1 ACATATGTATATATATA
4646662 ACATATGTATATATATA
1 ACATATGTATATATATA
4646679 A
1 A
4646680 TCCATTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (17 bp):
ACATATGTATATATATA
Found at i:4658711 original size:73 final size:73
Alignment explanation
Indices: 4658631--4658779 Score: 226
Period size: 73 Copynumber: 2.0 Consensus size: 73
4658621 TTTATTTCTG
* *
4658631 TTTCAAAAATCAACTCGTATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATTTTCAA
1 TTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATGTTCAA
4658696 TTTTTGTT
66 TTTTTGTT
* * * * * *
4658704 TTTCAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATGTTCAG
1 TTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATGTTCAA
4658769 TTTTTGTT
66 TTTTTGTT
4658777 TTT
1 TTT
4658780 TAATTTATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (73 bp):
TTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATGTTCAA
TTTTTGTT
Found at i:4658805 original size:160 final size:159
Alignment explanation
Indices: 4658619--4659318 Score: 779
Period size: 160 Copynumber: 4.4 Consensus size: 159
4658609 TATTCTGATA
* * *
4658619 TTTTT-ATTTCTGTTTC-AAAAATCAACTCGTATGGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTTAATTTATGTTTCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
4658682 TGAGGCATTTTCAATTTTTGTTTTTCAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTCA
66 TGAGGTATTTTCAATTTTTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
4658747 GGGCACGCTGAGGTATGTTCAGTTTTTGT
131 GGGCACGCTGAGGTATGTTCAGTTTTTGT
*
4658776 TTTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTTAATTTATGTTTC-AAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACG
4658841 CTGAGGTATTTTCAATTTTTGTTTTTCAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
65 CTGAGGTATTTTCAATTTTTGTTTTTC-AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
**
4658906 CAGGGCACGCTGAGGTATGTTTTGTTTTTGT
129 CAGGGCACGCTGAGGTATGTTCAGTTTTTGT
* * * *
4658937 TTTTTAATTTATGTTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCTTTAGGGCACGC
1 TTTTTAATTTATGTTTCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGC
4659002 TGAGGTATTTTCAATTTTTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 TGAGGTATTTTCAATTTTTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
4659067 GGACACGCTGAGGTAAT-TTCA-------A
131 GGGCACGCTGAGGT-ATGTTCAGTTTTTGT
* * * * *
4659089 ATTCT-A-TT-TG--TC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGC
1 TTTTTAATTTATGTTTCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* * *
4659148 TGAGGAATTTTCAATTCTTGCTTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGA
66 TGAGG-----T--A-------TTTTCAATTTTTGTTTTTC--AAAAATCGACTCATATTGCGAGA
* * * *
4659213 GGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATTTCTGTT
115 GGTGAGTTGAGCCTCAGG-GCAC--GCTGAGGTATGTTCAGTTTTTG-T
* * *
4659261 TTTTTCAATTTATATTTTTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTT-AA-TT-TATGTTTCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC
4659319 GGGTCACATG
Statistics
Matches: 471, Mismatches: 31, Indels: 59
0.84 0.06 0.11
Matches are distributed among these distances:
146 49 0.10
147 2 0.00
149 2 0.00
150 2 0.00
151 2 0.00
152 3 0.01
153 1 0.00
157 5 0.01
158 10 0.02
159 54 0.11
160 158 0.34
161 84 0.18
162 40 0.08
163 2 0.00
164 12 0.03
172 3 0.01
174 1 0.00
176 1 0.00
177 1 0.00
178 1 0.00
180 38 0.08
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (159 bp):
TTTTTAATTTATGTTTCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTTTTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGGCACGCTGAGGTATGTTCAGTTTTTGT
Found at i:4658841 original size:87 final size:87
Alignment explanation
Indices: 4658708--4658866 Score: 273
Period size: 87 Copynumber: 1.8 Consensus size: 87
4658698 TTTGTTTTTC
* * * *
4658708 AAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATGTTCAGTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATGTTCAATTTT
4658773 TGTTTTTTAATTTATGTTTCAA
66 TGTTTTTTAATTTATGTTTCAA
*
4658795 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATGTTCAATTTT
4658860 TGTTTTT
66 TGTTTTT
4658867 CAAAAAATCG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATGTTCAATTTT
TGTTTTTTAATTTATGTTTCAA
Found at i:4658901 original size:74 final size:74
Alignment explanation
Indices: 4658789--4659175 Score: 456
Period size: 73 Copynumber: 5.1 Consensus size: 74
4658779 TTAATTTATG
*
4658789 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
4658854 AATTTTTGTT
65 AATTTTTGTT
*
4658864 TTTCAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATGTTT-
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT-TTTC
**
4658928 TGTTTTTGTTTTTTAATTTAT
65 AATTTTTG----------T-T
* * * *
4658949 GTTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCTTTAGGGCACGCTGAGGTATTTTC
1 -TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
4659014 AATTTTTGTT
65 AATTTTTGTT
* * *
4659024 TTTC-AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* * *
4659088 AATTCTATT
66 ATTTTTGTT
* * *
4659097 TGTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
4659161 ATTCTTGCT
66 ATTTTTGTT
4659170 TTTCAA
1 TTTCAA
4659176 TTTCTGCTTT
Statistics
Matches: 264, Mismatches: 33, Indels: 31
0.80 0.10 0.09
Matches are distributed among these distances:
73 124 0.47
74 65 0.25
75 8 0.03
76 1 0.00
84 1 0.00
85 4 0.02
86 61 0.23
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTTTGTT
Found at i:4659009 original size:86 final size:86
Alignment explanation
Indices: 4658864--4659026 Score: 247
Period size: 86 Copynumber: 1.9 Consensus size: 86
4658854 AATTTTTGTT
* * *
4658864 TTTCAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATGTTT-
1 TTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT-TTTC
**
4658928 TGTTTTTGTTTTTTAATTTATG
65 AATTTTTGTTTTTTAATTTATG
* *
4658950 TTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCTTTAGGGCACGCTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
4659015 ATTTTTGTTTTT
66 ATTTTTGTTTTT
4659027 CAAAAATCGA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 3 0.04
86 66 0.96
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (86 bp):
TTTCAAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTTTGTTTTTTAATTTATG
Found at i:4659174 original size:14 final size:14
Alignment explanation
Indices: 4659155--4659189 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
4659145 CGCTGAGGAA
4659155 TTTTCAA-TTCTTGC
1 TTTTCAATTTC-TGC
4659169 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
4659183 TTTTCAA
1 TTTTCAA
4659190 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:4659278 original size:16 final size:16
Alignment explanation
Indices: 4659246--4659279 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4659236 TGCTGAGGTA
* *
4659246 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
4659262 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
4659278 TT
1 TT
4659280 CAAAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:4659301 original size:91 final size:91
Alignment explanation
Indices: 4659083--4659498 Score: 370
Period size: 91 Copynumber: 4.7 Consensus size: 91
4659073 GCTGAGGTAA
* * * *
4659083 TTTCAAATTCTATTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCAC-
1 TTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
* *
4659146 -GCTGAGGAATTTTCAA-TTCT-TGCT
65 TGCTGAGGTATTTTCAATTTCTGTTCT
**
4659170 TTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
1 TTTCAATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
*
4659235 ATGCTGAGGTATTTTCAATTTCTGTTTT
64 ATGCTGAGGTATTTTCAATTTCTGTTCT
* * *
4659263 TTTCAATTTATATTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAT
1 TTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
**
4659328 G-TCGAGGTATTTTCAAAATCTG--CT
66 GCT-GAGGTATTTTCAATTTCTGTTCT
* * * * * *
4659352 TTT-AAGTT-TA------AAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCTTTGGCTCACGT
1 TTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
*
4659409 GCTGAGCTATTTTCAATTTCTG-T-T
66 GCTGAGGTATTTTCAATTTCTGTTCT
* * * * * ** *
4659433 TTT-AATGTCTGTTTTT-ATAGAGTCAATTCATATTGCGAGAAATGAGTTGAG-CTCAGGATCAC
1 TTTCAATTTCTATTTTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCAC
4659495 ATGC
64 ATGC
4659499 CAAGTAAAGA
Statistics
Matches: 269, Mismatches: 42, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
81 64 0.24
82 2 0.01
87 18 0.07
88 41 0.15
89 44 0.16
90 1 0.00
91 78 0.29
92 4 0.01
93 17 0.06
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (91 bp):
TTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
GCTGAGGTATTTTCAATTTCTGTTCT
Found at i:4661753 original size:21 final size:22
Alignment explanation
Indices: 4661717--4661757 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4661707 ATATATTTTC
4661717 TTTTATATATTATGTATATGCA
1 TTTTATATATTATGTATATGCA
*
4661739 TTTTTTATA-TATGTATATG
1 TTTTATATATTATGTATATG
4661758 TTTATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (22 bp):
TTTTATATATTATGTATATGCA
Found at i:4661972 original size:15 final size:17
Alignment explanation
Indices: 4661952--4661984 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4661942 CTGTCACCTT
4661952 ACATAT-TAT-TATATA
1 ACATATGTATATATATA
4661967 ACATATGTATATATATA
1 ACATATGTATATATATA
4661984 A
1 A
4661985 TCCATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (17 bp):
ACATATGTATATATATA
Found at i:4663433 original size:19 final size:20
Alignment explanation
Indices: 4663393--4663441 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
4663383 AACAGTAATT
* *
4663393 AATTAATTAAAATTTTATAA
1 AATTAATAAAAATATTATAA
4663413 AATTAATAAAAATATTA-AA
1 AATTAATAAAAATATTATAA
4663432 AATTAATAAA
1 AATTAATAAA
4663442 TAGATTGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTAATAAAAATATTATAA
Found at i:4665030 original size:45 final size:45
Alignment explanation
Indices: 4664975--4665460 Score: 487
Period size: 45 Copynumber: 10.8 Consensus size: 45
4664965 AACCGGTGGC
* * * * * * *
4664975 TTCTTCGGAGGCTGATAAACTGGTGGTTTGGGTTCTGGTTTTTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * * * *
4665020 TTCTTTGGAGGTGCATAAACTGGTGGCTTTGGCTCGGGCTTTTCC
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * * *
4665065 TTCTTTGGCGGTTCATACACTGGTGGCTTAGGTTCAAGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * *
4665110 TTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCAGGCTTTTCC
1 TTCTTTGGAGGT-TCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * * *
4665155 TTCTTTGGTGGTTCATACACTGGTGGCTTGGGTTCAGGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * *
4665200 TTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCAGGCTTTTCC
1 TTCTTTGGAGGT-TCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * * * * *
4665245 TTCTTTGGTGGTTCATATACTGATGGTTTGGGTTCAGGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* *
4665290 TTCTTTGGAGGTGT-ATAAACTGGTGGCTTTGGTTC-GGACTTTTCC
1 TTCTTTGGAGGT-TCATAAACTGGTGGCTTAGGTTCAGG-CTTTTCT
* * * *
4665335 TTCTTTGGTGGTTCATACA-TCGGTGGCTTGGGTTCAGGTTTTTCT
1 TTCTTTGGAGGTTCATAAACT-GGTGGCTTAGGTTCAGGCTTTTCT
* * * *
4665380 TTCTTTGGAGGTTCATAGACAGGTGGCTTATGTTCAGGTTTTTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
* * *
4665425 TTCTTTGGAGGTTCATAGACAGGTGGCTTATGTTCA
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCA
4665461 TAAGGTGGGG
Statistics
Matches: 372, Mismatches: 59, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
44 6 0.02
45 361 0.97
46 5 0.01
ACGTcount: A:0.13, C:0.17, G:0.28, T:0.42
Consensus pattern (45 bp):
TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGTTCAGGCTTTTCT
Found at i:4665111 original size:90 final size:90
Alignment explanation
Indices: 4664993--4665453 Score: 615
Period size: 90 Copynumber: 5.1 Consensus size: 90
4664983 AGGCTGATAA
* * * * * *
4664993 ACTGGTGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGCATAAACTGGTGGCTTTGGCTCGGG
1 ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGG
*
4665058 CTTTTCCTTCTTTGGCGGTTCATAC
66 CTTTTCCTTCTTTGGTGGTTCATAC
* * * *
4665083 ACTGGTGGCTTAGGTTCAAGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGG
1 ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGG
4665148 CTTTTCCTTCTTTGGTGGTTCATAC
66 CTTTTCCTTCTTTGGTGGTTCATAC
* *
4665173 ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGG
1 ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGG
*
4665238 CTTTTCCTTCTTTGGTGGTTCATAT
66 CTTTTCCTTCTTTGGTGGTTCATAC
* * *
4665263 ACTGATGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGTTC-GG
1 ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGG
4665327 ACTTTTCCTTCTTTGGTGGTTCATAC
66 -CTTTTCCTTCTTTGGTGGTTCATAC
* * * * *
4665353 A-TCGGTGGCTTGGGTTCAGGTTTTTCTTTCTTTGGAGGT-TCATAGACAGGTGGCTTAT-GTTC
1 ACT-GGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGT-ATAAACTGGTGGCTT-TGGCTC
* * * *
4665415 AGGTTTTTCTTTCTTTGGAGGTTCATAG
63 AGGCTTTTCCTTCTTTGGTGGTTCATAC
*
4665443 ACAGGTGGCTT
1 ACTGGTGGCTT
4665454 ATGTTCATAA
Statistics
Matches: 334, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
89 4 0.01
90 327 0.98
91 3 0.01
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.43
Consensus pattern (90 bp):
ACTGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGAGGTGTATAAACTGGTGGCTTTGGCTCAGG
CTTTTCCTTCTTTGGTGGTTCATAC
Found at i:4675230 original size:64 final size:64
Alignment explanation
Indices: 4675153--4675272 Score: 222
Period size: 64 Copynumber: 1.9 Consensus size: 64
4675143 AACACATCTA
*
4675153 GTTAGGAGCATTTGATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCACATATG
1 GTTAGGAGAATTTGATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCACATATG
*
4675217 GTTAGGAGAATTTGATTTATTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 GTTAGGAGAATTTGATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
4675273 AGATACATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (64 bp):
GTTAGGAGAATTTGATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCACATATG
Found at i:4675569 original size:131 final size:129
Alignment explanation
Indices: 4675336--4675728 Score: 495
Period size: 130 Copynumber: 3.0 Consensus size: 129
4675326 ATCGGTGAAT
*
4675336 TTACAGATCTTGTCTCCCTGAAGTCAGTGGAACAGATCGAAAACGGTGAATCTTGTCTCTCTGAA
1 TTACAGATCTTGTCTCCCTGAAGTCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCTCT-AA
** * *
4675401 GTTGCAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAATAGTGGAGTAGGCTGAAGA
65 GCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGA
* *
4675466 TTACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTATCTTTCTA
1 TTACAGATCTTGTCTCCCTGAAG-T-CAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCTCTA
* * * *
4675531 AACAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAGGTAGTAGTAGAGTGGGCTGAAG
64 AGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAG
4675596 A
129 A
* * * ** * * *
4675597 TTAGAGATCTTATCT-CCTCAAG-CAATAGTGGAGTACATCGAAGACGGCGAATCTTGTCTCCCT
1 TTACAGATCTTGTCTCCCTGAAGTC---AGTGGAACAGATCGAAGACGGTGAATCTTGTCTCTCT
* * * * *
4675660 AAGCAGTAGTGAAGTAGATTTAAGCCACCATCCTATCTTCCTAAGCAGTAGTGGAGCAGGTTGAA
63 AAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAA
4675725 -A
128 GA
4675726 TTA
1 TTA
4675729 ACAATTCGTA
Statistics
Matches: 228, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
127 1 0.00
129 4 0.02
130 115 0.50
131 73 0.32
132 35 0.15
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (129 bp):
TTACAGATCTTGTCTCCCTGAAGTCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCTCTAAG
CAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGA
Found at i:4675780 original size:130 final size:130
Alignment explanation
Indices: 4675406--4675770 Score: 414
Period size: 130 Copynumber: 2.8 Consensus size: 130
4675396 CTGAAGTTGC
*
4675406 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAATAGTGGAGTAGGCTGAAGATT-AC
1 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTAAC
* * ** * **
4675470 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTATCTTTCTAAACA
66 A-ATCTTATCT-CCTGAAGTTTCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTCCCTAAACA
4675535 GT
129 GT
* * *
4675537 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAGGTAGTAGTAGAGTGGGCTGAAGATTAGA
1 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTA-A
* * ** * * *
4675602 -GATCTTATCTCCTCAAGCAAT-AGTGGAGTACATCGAAGACGGCGAATCTTGTCTCCCTAAGCA
65 CAATCTTATCTCCTGAAG-TTTCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTCCCTAAACA
4675665 GT
129 GT
* * * * *
4675667 AGTGAAGTAGATTTAAGCCACCATCCTATCTTCCTAAGCAGTAGTGGAGCAGGTTGAA-ATTAAC
1 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTAAC
* * *
4675731 AATTCGTATCTCCTTGAAGTTTCAGTAGAGTAGATTGAAG
66 AA-TCTTATCTCC-TGAAGTTTCAGTGGAGTAGATCGAAG
4675771 CTACAAATCT
Statistics
Matches: 193, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
128 1 0.01
129 5 0.03
130 102 0.53
131 84 0.44
133 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (130 bp):
AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTAAC
AATCTTATCTCCTGAAGTTTCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTCCCTAAACAGT
Found at i:4675788 original size:44 final size:45
Alignment explanation
Indices: 4675737--4676357 Score: 236
Period size: 44 Copynumber: 14.1 Consensus size: 45
4675727 TAACAATTCG
* * *
4675737 TATCTCCTTGAAGTTTCAGTAGAGTAGATTGAAGCTACAAATCTC
1 TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* ** * ** *
4675782 T-TCTCCTTGAAATGGCACTGGAGCGGCTCGAAGCCAC-AAT-TC
1 TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * *
4675824 ATATCTACTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTC
1 -TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* ** * * * * *
4675870 T-TCTGCC-TGAAATGGCACTAGAGCAGCTCGAAGCCAC-AGT-TC
1 TATCT-CCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* ** * *
4675912 GTATCTCCTTAAAGTTTCAGCAGAGTAAATCGAAGCTACAAATCTC
1 -TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * ** ** *
4675958 T-TCT-CTTGAAATGTCACCGGAGCGGCTCGAAGCCAC-AAT-TC
1 TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * *
4675999 GTATCTCCTTGAAGTTCCAGCGGAGTAAATCGAAGCCACAAATCTC
1 -TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * * ** * *
4676045 T-TCTCCCTAAAATGGCACTGGA--ACGACTTGAAGCCAC-AAT-TC
1 TATCTCCTTGAAGTTTCAGTGGAGTA-GA-TCGAAGCCACAAATCTC
* * *
4676087 GTATCTCCTTGAAG-TTCTAGCGAAGTAGATCGAAGCTACAAATCTC
1 -TATCTCCTTGAAGTTTC-AGTGGAGTAGATCGAAGCCACAAATCTC
* * ** * * * * *
4676133 T-TCTCCCTGAAATGGCACTAGAGTGGCTTGAAGCCAC-AAT-TC
1 TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * **
4676175 GTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGTTACAAATCTC
1 -TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * * * *
4676221 T-TCTCCCTGAAATGATT--GTGGAG-CGATTGAAGCCACAAACCT-
1 TATCTCCTTG-AA-GTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
* * * * ** *
4676263 TATCTCCCTGAAGTTGT-AGTGGAGCAGGTTGAAGTTACAAGTCT-
1 TATCTCCTTGAAGTT-TCAGTGGAGTAGATCGAAGCCACAAATCTC
* * * * **
4676307 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCT-
1 TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCA-CAAATCTC
4676352 TATCTC
1 TATCTC
4676358 TCTGAAATCA
Statistics
Matches: 416, Mismatches: 123, Indels: 74
0.68 0.20 0.12
Matches are distributed among these distances:
41 4 0.01
42 17 0.04
43 72 0.17
44 272 0.65
45 38 0.09
46 13 0.03
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (45 bp):
TATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCCACAAATCTC
Found at i:4675829 original size:88 final size:88
Alignment explanation
Indices: 4675729--4676234 Score: 728
Period size: 88 Copynumber: 5.8 Consensus size: 88
4675719 GTTGAAATTA
** * *
4675729 ACAATTCGTATCTCCTTGAAGTTTCAGTAGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
4675794 TGGCACTGGAGCGGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * *
4675817 ACAATTCATATCTACTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTGCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
4675882 TGGCACTAGAGCAGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * * *
4675905 ACAGTTCGTATCTCCTTAAAGTTTCAGCAGAGTAAATCGAAGCTACAAATCTCTTCT-CTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
4675969 TGTCACCGGAGCGGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * *
4675992 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * *
4676057 TGGCACTGGAACGACTTGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
*
4676080 ACAATTCGTATCTCCTTGAAG-TTCTAGCGAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
* * *
4676144 ATGGCACTAGAGTGGCTTGAAGCC
65 ATGGCACTGGAGCGGCTCGAAGCC
* *
4676168 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
4676233 TG
66 TG
4676235 ATTGTGGAGC
Statistics
Matches: 371, Mismatches: 44, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
87 79 0.21
88 290 0.78
89 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTGGAGCGGCTCGAAGCC
Found at i:4676209 original size:263 final size:264
Alignment explanation
Indices: 4675729--4676234 Score: 764
Period size: 263 Copynumber: 1.9 Consensus size: 264
4675719 GTTGAAATTA
* * * * * * *
4675729 ACAATTCGTATCTCCTTGAAGTTTCAGTAGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
* * *
4675794 TGGCACTGGAGCGGCTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGGAGTAGATCGAAG
66 TGGCACTGGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGAAGTAGATCGAAG
* *
4675859 CTACAAATCTCTTCTGCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAGTTCGTATCTCCTTAA
131 CTACAAATCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTAA
* *
4675924 AGTTTCAGCAGAGTAAATCGAAGCTACAAATCTCTTCT-CTTGAAATGTCACCGGAGCGGCTCGA
196 AGTTCCAGCAGAGTAAATCGAAGCTACAAATCTCTTCTCCCTGAAATGTCACCGGAGCGGCTCGA
4675988 AGCC
261 AGCC
*
4675992 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
* * *
4676057 TGGCACTGGAACGACTTGAAGCCACAATTCGTATCTCCTTGAAG-TTCTAGCGAAGTAGATCGAA
66 TGGCACTGGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTC-AGCGAAGTAGATCGAA
** * *
4676121 GCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGTGGCTTGAAGCCACAATTCGTATCTCCTTG
130 GCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTA
* * *
4676186 AAGTTCCAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAATG
195 AAGTTCCAGCAGAGTAAATCGAAGCTACAAATCTCTTCTCCCTGAAATG
4676235 ATTGTGGAGC
Statistics
Matches: 216, Mismatches: 25, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
262 3 0.01
263 205 0.95
264 8 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (264 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
TGGCACTGGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGAAGTAGATCGAAG
CTACAAATCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTAA
AGTTCCAGCAGAGTAAATCGAAGCTACAAATCTCTTCTCCCTGAAATGTCACCGGAGCGGCTCGA
AGCC
Found at i:4676297 original size:87 final size:87
Alignment explanation
Indices: 4675729--4676340 Score: 622
Period size: 88 Copynumber: 7.0 Consensus size: 87
4675719 GTTGAAATTA
** * * *
4675729 ACAATTCGTATCTCCTTGAAGTT-TCAGTAGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAA
1 ACAATTCGTATCTCCTTGAAGTTCT-AGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAA
* *
4675793 ATGGCACTGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGC-GATTGAAGCC
* * * *
4675817 ACAATTCATATCTACTTGAAGTT-TCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTGCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTCT-AGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAA
* * *
4675881 ATGGCACTAGAGCAGCTCGAAGCC
65 ATGGCACTGGAGC-GATTGAAGCC
* * * * * *
4675905 ACAGTTCGTATCTCCTTAAAGTT-TCAGCAGAGTAAATCGAAGCTACAAATCTCTTCT-CTTGAA
1 ACAATTCGTATCTCCTTGAAGTTCT-AGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAA
* * * *
4675968 ATGTCACCGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGC-GATTGAAGCC
* * ** *
4675992 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTCTAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
*
4676057 TGGCACTGGAACGACTTGAAGCC
66 TGGCACTGGAGCGA-TTGAAGCC
* *
4676080 ACAATTCGTATCTCCTTGAAGTTCTAGCGAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCTAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
* * *
4676145 TGGCACTAGAGTGGCTTGAAGCC
66 TGGCACTGGAG-CGATTGAAGCC
*
4676168 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCTAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
****
4676233 TGATTGTGGAGCGATTGAAGCC
66 TGGCACTGGAGCGATTGAAGCC
** * * * * * * * *
4676255 ACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTCT-TATCTCCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTCTAGCGGAGTAGATCGAAGTTACAAATCTCT-TCTCCCTGAA
* * *
4676319 GTTGCAGTGGAGCAGATTGAAG
65 ATGGCACTGGAGC-GATTGAAG
4676341 ATAGCAAATC
Statistics
Matches: 451, Mismatches: 67, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
86 1 0.00
87 145 0.32
88 304 0.67
89 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (87 bp):
ACAATTCGTATCTCCTTGAAGTTCTAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAA
TGGCACTGGAGCGATTGAAGCC
Found at i:4676315 original size:263 final size:262
Alignment explanation
Indices: 4675735--4676315 Score: 729
Period size: 263 Copynumber: 2.2 Consensus size: 262
4675725 ATTAACAATT
* * *
4675735 CGTATCTCCTTGAAGTTTCAGTAGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
1 CGTATCTCCTTGAAGTTT-AGTGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTAAAATGGCAC
* * *
4675800 TGGAGCGGCTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
65 TGGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGAAGTAGATCGAAGCTACAA
* * *
4675865 ATCTCTTCTGCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAGTTCGTATCTCCTTAAAGTTTC
130 ATCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTAAAGTTCC
* *
4675930 AGCAGAGTAAATCGAAGCTACAAATCTCTTCTCTTGAAATGTCACCGGAGCGGCTCGAAGCCACA
195 AGCAGAGTAAATCGAAGCTACAAATCTCTTCTCCTGAAATGTCACCGGAGCGGATCGAAGCCACA
**
4675995 ATT
260 AAC
* * * * *
4675998 CGTATCTCCTTGAAGTTCCAGCGGAGTAAATCGAAGCCACAAATCTCTTCTCCCTAAAATGGCAC
1 CGTATCTCCTTGAAGTT-TAGTGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTAAAATGGCAC
* * *
4676063 TGGAACGACTTGAAGCCACAATTCGTATCTCCTTGAAG-TTCTAGCGAAGTAGATCGAAGCTACA
65 TGGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTC-AGCGAAGTAGATCGAAGCTACA
** * *
4676127 AATCTCTTCTCCCTGAAATGGCACTAGAGTGGCTTGAAGCCACAATTCGTATCTCCTTGAAGTTC
129 AATCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTAAAGTTC
* * * *** *
4676192 CAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCCTGAAATGAT-TGTGGAGC-GATTGAAGCC
194 CAGCAGAGTAAATCGAAGCTACAAATCTCTTCT-CCTGAAATG-TCACCGGAGCGGATCGAAGCC
4676255 ACAAAC
257 ACAAAC
* * * * * *
4676261 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTCT-TATCTCCCT
1 CGTATCTCCTTGAAGTT-TAGTGGAGTAGATTGAAGCTACAAATCTCT-TCTCCCT
4676316 GAAGTTGCAG
Statistics
Matches: 269, Mismatches: 44, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
262 4 0.01
263 251 0.93
264 13 0.05
265 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (262 bp):
CGTATCTCCTTGAAGTTTAGTGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTAAAATGGCACT
GGAACGACTCGAAGCCACAATTCATATCTACTTGAAGTTTCAGCGAAGTAGATCGAAGCTACAAA
TCTCTTCTCCCTGAAATGGCACTAGAGCAGCTCGAAGCCACAATTCGTATCTCCTTAAAGTTCCA
GCAGAGTAAATCGAAGCTACAAATCTCTTCTCCTGAAATGTCACCGGAGCGGATCGAAGCCACAA
AC
Found at i:4676377 original size:45 final size:44
Alignment explanation
Indices: 4676284--4676408 Score: 106
Period size: 45 Copynumber: 2.8 Consensus size: 44
4676274 AGTTGTAGTG
* * * * ** * *
4676284 GAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTG
1 GAGCAGATTGAAGATACAAATCTTATCTCCCTGAAATCACAATA
*
4676328 GAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAATCACAATA
1 GAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAATCACAATA
* * * * *
4676373 GAGCAGAGTTAAAGCTATAAACCTTATCCCCCTGAA
1 GAGCAGA-TTGAAGATACAAATCTTATCTCCCTGAA
4676409 GTTGCAATGG
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 14 0.22
45 43 0.67
46 7 0.11
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (44 bp):
GAGCAGATTGAAGATACAAATCTTATCTCCCTGAAATCACAATA
Found at i:4679354 original size:19 final size:18
Alignment explanation
Indices: 4679326--4679364 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4679316 TTAGCAAGTC
*
4679326 TTGAAAACTTCTATATAT
1 TTGAAAACTTCTATAAAT
*
4679344 TTGAGAAACTTGTATAAAT
1 TTGA-AAACTTCTATAAAT
4679363 TT
1 TT
4679365 ATTTACTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (18 bp):
TTGAAAACTTCTATAAAT
Found at i:4682406 original size:10 final size:10
Alignment explanation
Indices: 4682391--4682416 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
4682381 ATTCCTACAT
4682391 AACATACAAG
1 AACATACAAG
4682401 AACATACAAG
1 AACATACAAG
4682411 AACATA
1 AACATA
4682417 GAACATGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.19, G:0.08, T:0.12
Consensus pattern (10 bp):
AACATACAAG
Found at i:4682804 original size:90 final size:90
Alignment explanation
Indices: 4682667--4683044 Score: 539
Period size: 90 Copynumber: 4.2 Consensus size: 90
4682657 ACACTGGTGG
* * * * * * *
4682667 CTTCTTTGGAGGCTT-ATAAACTGGTGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGCATAA
1 CTTCTTTGGAGG-TTCATATACTGGTGGTTTGGCTTCAGGCTTCTCTTTCTTTGGAGGCGTATAA
*
4682731 ACTGGTGGCTTAGGTTCAGG-TTTCTC
65 ACTGGTGGCTTAGGCTCAGGCTTT-TC
* * * *
4682757 CTTCTTTGGTGGTTCATACACTGGTGGTTTAGGCTT-AGGCTTCTCTTTCTTTGGTGGCATATAA
1 CTTCTTTGGAGGTTCATATACTGGTGGTTT-GGCTTCAGGCTTCTCTTTCTTTGGAGGCGTATAA
4682821 ACTGGTGGCTTAGGCTCAGGCTTTTC
65 ACTGGTGGCTTAGGCTCAGGCTTTTC
* *
4682847 TTTCTTTGGAGGTTCATATACTGGTGGTTTGGGC-TCAGGCTTCTCTTTCTTTGGTGGCGTATAA
1 CTTCTTTGGAGGTTCATATACTGGTGGTTT-GGCTTCAGGCTTCTCTTTCTTTGGAGGCGTATAA
4682911 ACTGGTGGCTTAGGCTCAGGCTTTTC
65 ACTGGTGGCTTAGGCTCAGGCTTTTC
*
4682937 CTTCTTTGGAGGTTCATATACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGCGTATAAA
1 CTTCTTTGGAGGTTCATATACTGGTGGTTTGGCTTCAGGCTTCTCTTTCTTTGGAGGCGTATAAA
*
4683002 CTGGTGGCTTAGGCTCAGGCTTCTC
66 CTGGTGGCTTAGGCTCAGGCTTTTC
*
4683027 CTTCTTTGGTGGTTCATA
1 CTTCTTTGGAGGTTCATA
4683045 AACAGGGGGC
Statistics
Matches: 262, Mismatches: 21, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
89 5 0.02
90 250 0.95
91 7 0.03
ACGTcount: A:0.13, C:0.17, G:0.28, T:0.42
Consensus pattern (90 bp):
CTTCTTTGGAGGTTCATATACTGGTGGTTTGGCTTCAGGCTTCTCTTTCTTTGGAGGCGTATAAA
CTGGTGGCTTAGGCTCAGGCTTTTC
Found at i:4682827 original size:135 final size:135
Alignment explanation
Indices: 4682667--4683057 Score: 509
Period size: 135 Copynumber: 2.9 Consensus size: 135
4682657 ACACTGGTGG
* * *
4682667 CTTCTTTGGAGGCTTATAAACTGGTGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGCATAAA
1 CTTCTTTGGAGGCATATAAACTGGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGCATAAA
* * * * *
4682732 CTGGTGGCTTAGGTTCAGGTTTCTCCTTCTTTGGTGGTTCATACACTGGTGGTTTAGGCTTAGGC
66 CTGGTGGCTTAGGCTCAGGCTTCTCCTTCTTTGGTGGTTCATAAACTGGTGGCTTAGGCTCAGGC
4682797 TTCTC
131 TTCTC
* * * * * * *
4682802 TTTCTTTGGTGGCATATAAACTGGTGGCTTAGGCTCAGGCTTTTCTTTCTTTGGAGGTTCATATA
1 CTTCTTTGGAGGCATATAAACTGGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGCATAAA
* * * *
4682867 CTGGTGGTTTGGGCTCAGGCTTCTCTTTCTTTGGTGGCGT-ATAAACTGGTGGCTTAGGCTCAGG
66 CTGGTGGCTTAGGCTCAGGCTTCTCCTTCTTTGGTGG-TTCATAAACTGGTGGCTTAGGCTCAGG
*
4682931 CTTTTC
130 CTTCTC
* * *
4682937 CTTCTTTGGAGGTTCATAT--ACTGGTGGTTTGGGTTCAGGCTTCTCTTTCTTTGGAGGCGTATA
1 CTTCTTTGGAGG--CATATAAACTGGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGCATA
* *
4683000 AACTGGTGGCTTAGGCTCAGGCTTCTCCTTCTTTGGTGGTTCATAAACAGGGGGCTTA
64 AACTGGTGGCTTAGGCTCAGGCTTCTCCTTCTTTGGTGGTTCATAAACTGGTGGCTTA
4683058 TGTTCATAAG
Statistics
Matches: 216, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
134 1 0.00
135 209 0.97
136 1 0.00
137 5 0.02
ACGTcount: A:0.14, C:0.17, G:0.28, T:0.41
Consensus pattern (135 bp):
CTTCTTTGGAGGCATATAAACTGGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGCATAAA
CTGGTGGCTTAGGCTCAGGCTTCTCCTTCTTTGGTGGTTCATAAACTGGTGGCTTAGGCTCAGGC
TTCTC
Found at i:4683056 original size:45 final size:45
Alignment explanation
Indices: 4682668--4683057 Score: 419
Period size: 45 Copynumber: 8.7 Consensus size: 45
4682658 CACTGGTGGC
* * * * * *
4682668 TTCTTTGGAGGCTT-ATAAACTGGTGGTTTGGGTTCTGGTTTTTCT
1 TTCTTTGGAGG-TTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * * *
4682713 TTCTTTGGAGGTGCATAAACTGGTGGCTTAGGTTCAGGTTTCTCC
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * * *
4682758 TTCTTTGGTGGTTCATACACTGGTGGTTTAGGCTTAGGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * *
4682803 TTCTTTGGTGGCAT-ATAAACTGGTGGCTTAGGCTCAGGCTTTTCT
1 TTCTTTGGAGG-TTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * *
4682848 TTCTTTGGAGGTTCATATACTGGTGGTTTGGGCTCAGGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * * *
4682893 TTCTTTGGTGGCGT-ATAAACTGGTGGCTTAGGCTCAGGCTTTTCC
1 TTCTTTGGAGG-TTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * * *
4682938 TTCTTTGGAGGTTCATATACTGGTGGTTTGGGTTCAGGCTTCTCT
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* *
4682983 TTCTTTGGAGGCGT-ATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
1 TTCTTTGGAGG-TTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
* * *
4683028 TTCTTTGGTGGTTCATAAACAGGGGGCTTA
1 TTCTTTGGAGGTTCATAAACTGGTGGCTTA
4683058 TGTTCATAAG
Statistics
Matches: 288, Mismatches: 50, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
44 4 0.01
45 281 0.98
46 3 0.01
ACGTcount: A:0.14, C:0.17, G:0.28, T:0.41
Consensus pattern (45 bp):
TTCTTTGGAGGTTCATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
Found at i:4684407 original size:17 final size:15
Alignment explanation
Indices: 4684385--4684418 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
4684375 ACCATGGTGC
4684385 TTTCCTTTTCTTTCTTT
1 TTTCCTTTT-TTT-TTT
4684402 TTTCCTTTTTTTTTT
1 TTTCCTTTTTTTTTT
4684417 TT
1 TT
4684419 GCATTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 3 0.18
17 9 0.53
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTCCTTTTTTTTTT
Found at i:4694782 original size:5 final size:5
Alignment explanation
Indices: 4694768--4694813 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
4694758 AGGCAACCCA
4694768 ATTTT A-TTT ATTTT ATTTT ATTTAT ATTTT ATATTT -TCTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTT-T ATTTT AT-TTT AT-TTT ATTTT
4694814 CTTTCATGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
4 4 0.11
5 23 0.64
6 9 0.25
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:4694797 original size:11 final size:10
Alignment explanation
Indices: 4694768--4694813 Score: 51
Period size: 11 Copynumber: 4.5 Consensus size: 10
4694758 AGGCAACCCA
4694768 ATTTTA-TTT
1 ATTTTATTTT
4694777 ATTTTATTTT
1 ATTTTATTTT
4694787 ATTTATATTTT
1 ATTT-TATTTT
4694798 ATATTT-TCTTT
1 AT-TTTAT-TTT
4694809 ATTTT
1 ATTTT
4694814 CTTTCATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
9 6 0.18
10 11 0.33
11 14 0.42
12 2 0.06
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (10 bp):
ATTTTATTTT
Found at i:4697548 original size:25 final size:25
Alignment explanation
Indices: 4697512--4697560 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4697502 GATTCACCAT
*
4697512 CTTCAATCTGCTCCGCTACAACTTA
1 CTTCAATCTGCTCCACTACAACTTA
*
4697537 CTTCAA-CTTGCTCCACTGCAACTT
1 CTTCAATC-TGCTCCACTACAACTT
4697561 CAGGGAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.22, C:0.37, G:0.08, T:0.33
Consensus pattern (25 bp):
CTTCAATCTGCTCCACTACAACTTA
Found at i:4698310 original size:12 final size:12
Alignment explanation
Indices: 4698293--4698317 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4698283 CACCTTGGCC
4698293 TCTCTTTTTTTT
1 TCTCTTTTTTTT
4698305 TCTCTTTTTTTT
1 TCTCTTTTTTTT
4698317 T
1 T
4698318 ATTATTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TCTCTTTTTTTT
Found at i:4698378 original size:38 final size:38
Alignment explanation
Indices: 4698322--4698395 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
4698312 TTTTTTATTA
*
4698322 TTGGGTCTGAAAGCGCCCTTTACGGGTATTCACTTTAT
1 TTGGGTCTCAAAGCGCCCTTTACGGGTATTCACTTTAT
* * * *
4698360 TTGGGTCTCAAAGTGCCCTTTGCGGGTTTTTACTTT
1 TTGGGTCTCAAAGCGCCCTTTACGGGTATTCACTTT
4698396 GGCCCCCTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (38 bp):
TTGGGTCTCAAAGCGCCCTTTACGGGTATTCACTTTAT
Found at i:4709200 original size:21 final size:20
Alignment explanation
Indices: 4709176--4709225 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
4709166 TACAAAAATA
*
4709176 ATAATAATAATAATATACAC
1 ATAATAATAATAATACACAC
* *
4709196 GATAATAAAAATATTACACAC
1 -ATAATAATAATAATACACAC
4709217 ATAAATAAT
1 AT-AATAAT
4709226 TTTAGAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.28
Consensus pattern (20 bp):
ATAATAATAATAATACACAC
Found at i:4709202 original size:18 final size:19
Alignment explanation
Indices: 4709179--4709214 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4709169 AAAAATAATA
*
4709179 ATAATAATAATA-TACACG
1 ATAATAAAAATATTACACG
4709197 ATAATAAAAATATTACAC
1 ATAATAAAAATATTACAC
4709215 ACATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.28
Consensus pattern (19 bp):
ATAATAAAAATATTACACG
Found at i:4711229 original size:14 final size:14
Alignment explanation
Indices: 4711210--4711238 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4711200 AGGTTAAATC
4711210 TGCTACATTGCCGA
1 TGCTACATTGCCGA
4711224 TGCTACATTGCCGA
1 TGCTACATTGCCGA
4711238 T
1 T
4711239 ACATGGAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (14 bp):
TGCTACATTGCCGA
Found at i:4711563 original size:101 final size:101
Alignment explanation
Indices: 4711388--4711578 Score: 301
Period size: 101 Copynumber: 1.9 Consensus size: 101
4711378 AATAAAATTC
* * * * * *
4711388 ACCATTTGCGAAGATCTGCTCCGCTGCAATCTCAGGGAGATAAGATCTTTAATTCTCAGTCTACT
1 ACCATCTGCGAAGATCCGCTCCGCTACAAACTCAGGGAGATAAAATCTTCAATTCTCAGTCTACT
**
4711453 TCCTTGCTACCTCAGGAAGATAAGATACATTCTTCA
66 TCCTTGCTACCTCAAAAAGATAAGATACATTCTTCA
*
4711489 ACCATCTGCGAAGATCCGCTCCGCTACAAACTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCT
1 ACCATCTGCGAAGATCCGCTCCGCTACAAACTCAGGGAGATAAAATCTTCAATTCTCAGTCTACT
4711554 TCCTTGCTACCTCAAAAAGATAAGA
66 TCCTTGCTACCTCAAAAAGATAAGA
4711579 CCTGCTCTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 81 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (101 bp):
ACCATCTGCGAAGATCCGCTCCGCTACAAACTCAGGGAGATAAAATCTTCAATTCTCAGTCTACT
TCCTTGCTACCTCAAAAAGATAAGATACATTCTTCA
Found at i:4711918 original size:180 final size:178
Alignment explanation
Indices: 4711578--4712196 Score: 786
Period size: 180 Copynumber: 3.5 Consensus size: 178
4711568 AAAAGATAAG
** * * * * *
4711578 ACCTGCTCTCCCGCTACCTCAGAGAGATG-AGGCTGGTGGTAAAATCTACTCCATTGCCAATACA
1 ACCTGCTCTCTTGCTACCTTAGAGAGA-GAAGGTTGGAGGTAAAATCTGCTCCATTGCCGATACA
* * * * * *
4711642 TGGAA-ATAAGATTTACCATTTGTGAAAATCTGCTCTG-TGACGACTTTAGGGAGATAAAATTTT
65 T-GAAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTG-CAACTTTAGGGAGATAAAATTTT
*
4711705 CAATTCTCAGTCTACTTCCTTGCTACCTCAGGAAGATAGGACTCATTCTTTA
128 CAATTCTCAGTCTACTTCCTTGCTACCTCAGGAAGATA-GACTCATTCTTCA
* * ** * *
4711757 ACCTGCTCTGTTACTACCTTAGAGAGAGAAGGTTTAAAAGTAAAATCTGTTCCATTGCCGATACA
1 ACCTGCTCTCTTGCTACCTTAGAGAGAGAAGG-TTGGAGGTAAAATCTGCTCCATTGCCGATACA
* * * *
4711822 TGGAGATAAGATTCACCATCTACGAAGATCTGCTCCGCTGCAACTTTAGGAAGATAAAATCTTCA
65 TGAAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTTAGGGAGATAAAATTTTCA
* *
4711887 ATTCTTAGTCTACTTCCTTGCTATCTCAGGAAGATAAGACTCATTCTTCA
130 ATTCTCAGTCTACTTCCTTGCTACCTCAGGAAGAT-AGACTCATTCTTCA
* * * *
4711937 ACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGTAAAATCTGCTCCATTGCCGATATA
1 ACCTGCTCTCTTGCTACCTTAGAGAGAGAAGG-TTGGAGGTAAAATCTGCTCCATTGCCGATACA
*
4712002 TGAAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGTAACTTTAGGGAGATAAAATTTTCA
65 TGAAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTTAGGGAGATAAAATTTTCA
* *
4712067 ATTCTCAGCCTGCTTCCTTGCTACCTCA-G--GA-AGACTCATTCTTCA
130 ATTCTCAGTCTACTTCCTTGCTACCTCAGGAAGATAGACTCATTCTTCA
* * *
4712112 ACCTGCTCCCTTGCTACCTTAGAGAGATG-AGGCTGGAGGTAAAATCTGCTCCATTGCTGATACA
1 ACCTGCTCTCTTGCTACCTTAGAGAGA-GAAGGTTGGAGGTAAAATCTGCTCCATTGCCGATACA
4712176 TGAAGATAAGATTCACCATCT
65 TGAAGATAAGATTCACCATCT
4712197 TCAATCTGCT
Statistics
Matches: 381, Mismatches: 53, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
174 49 0.13
175 42 0.11
177 2 0.01
178 1 0.00
179 28 0.07
180 256 0.67
181 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (178 bp):
ACCTGCTCTCTTGCTACCTTAGAGAGAGAAGGTTGGAGGTAAAATCTGCTCCATTGCCGATACAT
GAAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTTAGGGAGATAAAATTTTCAA
TTCTCAGTCTACTTCCTTGCTACCTCAGGAAGATAGACTCATTCTTCA
Found at i:4715306 original size:10 final size:10
Alignment explanation
Indices: 4715291--4715330 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
4715281 TAATTTTAGC
4715291 ATTTATCTTT
1 ATTTATCTTT
4715301 ATTTATCTTT
1 ATTTATCTTT
*
4715311 ATTTAT-TTGC
1 ATTTATCTT-T
4715321 ATTTATCTTT
1 ATTTATCTTT
4715331 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:4720743 original size:21 final size:22
Alignment explanation
Indices: 4720704--4720744 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4720694 TTGAAATGGT
*
4720704 CACACTGGCATGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
4720726 CACACGGGCATG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
4720745 GTATTTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.15, C:0.44, G:0.22, T:0.20
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:4723670 original size:50 final size:49
Alignment explanation
Indices: 4723595--4723771 Score: 264
Period size: 50 Copynumber: 3.5 Consensus size: 49
4723585 CCATGGCAAC
*
4723595 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATTAAGGACTAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAC-AATGA
* *
4723645 AAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAA-TGA
4723695 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAC-AATGA
* * *
4723745 CAAGTGAAAAGTGGTAGCTTCGACTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
4723772 CTGACCAGTG
Statistics
Matches: 116, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.02
50 89 0.77
51 25 0.22
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (49 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAATGA
Found at i:4723785 original size:31 final size:31
Alignment explanation
Indices: 4723742--4723864 Score: 165
Period size: 31 Copynumber: 4.0 Consensus size: 31
4723732 CAAGGACAAA
* *
4723742 TGACAAGTGAAAAGTGGTAGCTTCGACTACC
1 TGACCAGTGAAAAGTGGTAGCTTCGGCTACC
* *
4723773 TGACCAGTGAAAAGTGGTAGCTTCTGCTATC
1 TGACCAGTGAAAAGTGGTAGCTTCGGCTACC
* * *
4723804 TGATCAGTGAAAATTGGTAGCTCCGGCTACC
1 TGACCAGTGAAAAGTGGTAGCTTCGGCTACC
* *
4723835 TGATCAGTGAATAGTGGTAGCTTCGGCTAC
1 TGACCAGTGAAAAGTGGTAGCTTCGGCTAC
4723865 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (31 bp):
TGACCAGTGAAAAGTGGTAGCTTCGGCTACC
Found at i:4723933 original size:46 final size:48
Alignment explanation
Indices: 4723882--4724007 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 48
4723872 AAGTGATTTC
* * *
4723882 CGTGTAAGACCATATTTGGGATATGGCATCA-GTGAGATATGTGATT-
1 CGTGTAAGACCATAATTGGGCTATGGCATCATATGAGATATGTGATTA
* *
4723928 CGTGTAAGACCATAGTTGGGCTATGGCATCAATATGTGATATGTGATTA
1 CGTGTAAGACCATAATTGGGCTATGGCATC-ATATGAGATATGTGATTA
*
4723977 CGTGTAAGACCATAACTGGGCTATGGCATCA
1 CGTGTAAGACCATAATTGGGCTATGGCATCA
4724008 ATATATGAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 28 0.39
47 1 0.01
48 14 0.20
49 28 0.39
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
CGTGTAAGACCATAATTGGGCTATGGCATCATATGAGATATGTGATTA
Found at i:4723997 original size:49 final size:48
Alignment explanation
Indices: 4723882--4724022 Score: 187
Period size: 49 Copynumber: 2.9 Consensus size: 48
4723872 AAGTGATTTC
* * * *
4723882 CGTGTAAGACCATATTTGGGATATGGCATC-A-GTGAGATATGTGATT
1 CGTGTAAGACCATAATTGGGCTATGGCATCAATATGTGATATGTGATT
*
4723928 CGTGTAAGACCATAGTTGGGCTATGGCATCAATATGTGATATGTGATT
1 CGTGTAAGACCATAATTGGGCTATGGCATCAATATGTGATATGTGATT
* *
4723976 ACGTGTAAGACCATAACTGGGCTATGGCATCAATATATGAATATGTG
1 -CGTGTAAGACCATAATTGGGCTATGGCATCAATATGTG-ATATGTG
4724023 TAAAACCATA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
46 28 0.33
47 1 0.01
48 13 0.15
49 35 0.42
50 7 0.08
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (48 bp):
CGTGTAAGACCATAATTGGGCTATGGCATCAATATGTGATATGTGATT
Found at i:4726748 original size:16 final size:16
Alignment explanation
Indices: 4726724--4726754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4726714 CTGCTTCACT
4726724 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
4726740 TACTTACTTACTTAA
1 TACTCACTTACTTAA
4726755 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:4726760 original size:20 final size:20
Alignment explanation
Indices: 4726721--4726760 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4726711 AAACTGCTTC
* *
4726721 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
4726741 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
4726761 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:4727148 original size:55 final size:54
Alignment explanation
Indices: 4726946--4727201 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
4726936 ACACGGGTAC
* * * * *
4726946 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
4726995 CTTACCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * * *
4727048 CTCACCAATGCTATGCCTAGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * * * * * *
4727103 CTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTAGAGAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
*
4727157 CTTACCAAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 CTTACC-AATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
4727202 AACCCTAATG
Statistics
Matches: 166, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 41 0.25
54 7 0.04
55 73 0.44
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:4728709 original size:29 final size:30
Alignment explanation
Indices: 4728676--4728747 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
4728666 TTTAAAAATA
4728676 AAAAATTTAAATTTTTATA-TTTT-ATTTT
1 AAAAATTTAAATTTTTATATTTTTAATTTT
* *
4728704 CAAAAATTTTATTTTTTATATTTTTAATTTT
1 -AAAAATTTAAATTTTTATATTTTTAATTTT
*
4728735 AAAATTTTAAATT
1 AAAAATTTAAATT
4728748 CAATTATTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 17 0.47
30 14 0.39
31 5 0.14
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (30 bp):
AAAAATTTAAATTTTTATATTTTTAATTTT
Found at i:4730734 original size:102 final size:102
Alignment explanation
Indices: 4730605--4730880 Score: 356
Period size: 102 Copynumber: 2.7 Consensus size: 102
4730595 CTTATGTACA
* * * * *
4730605 GGAGGTTTCTTTGGAGGTTCGTACATTGGTGGTTTTGGTTCTGGCTTCTCTTTCTTTGGTGGTGC
1 GGAGGCTTCTTTGGAGGTTCATACATTGGTGGTTTGGGTTCTGGCTTTTCTTTCTTTGGAGGTGC
* * *
4730670 ATAAACTGGTGACTTTTGTGGCTTGGGCTCATACATT
66 ATAAACTGGTGACTTTGGTGGCTTAGGCTCATACACT
* * * *
4730707 GGAGGCTTATTTGGTGGTTCATACATTGGTGGTTTGGGTT-TAGGCTTTTCCTTCTTTGGAGATG
1 GGAGGCTTCTTTGGAGGTTCATACATTGGTGGTTTGGGTTCT-GGCTTTTCTTTCTTTGGAGGTG
*
4730771 CATAAACTGGTGGCTTTGGTGGCTTAGGCTCATACACT
65 CATAAACTGGTGACTTTGGTGGCTTAGGCTCATACACT
* * * * * * *
4730809 GGTGGCTTCTTTGGAGGCTCATAAACTAGAGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGC
1 GGAGGCTTCTTTGGAGGTTCATACATTGGTGGTTTGGGTTCTGGCTTTTCTTTCTTTGGAGGTGC
4730874 ATAAACT
66 ATAAACT
4730881 AGCGGTTTAG
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
101 1 0.01
102 146 0.99
103 1 0.01
ACGTcount: A:0.14, C:0.14, G:0.30, T:0.41
Consensus pattern (102 bp):
GGAGGCTTCTTTGGAGGTTCATACATTGGTGGTTTGGGTTCTGGCTTTTCTTTCTTTGGAGGTGC
ATAAACTGGTGACTTTGGTGGCTTAGGCTCATACACT
Found at i:4730909 original size:45 final size:45
Alignment explanation
Indices: 4730860--4731290 Score: 358
Period size: 45 Copynumber: 9.7 Consensus size: 45
4730850 TGGTTTTTCT
* * * *
4730860 TTCTTTGGAGGTGCATAAACTAGCGGTTTAGGCTCAAGCTTCTCC
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
* * * * *
4730905 TTCTTTGGTGGTTCATACA-TAGGTGGCTTGGGTTCAGGCTTCTCT
1 TTCTTTGGTGGTGCATAAACTA-GTGGCTTAGGCTCAGGCTTCTCC
* *
4730950 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
* * * * * *
4730995 TTCTTTGGTGGTTCATACACAAGTGGCTTGGGTTCAGGCTTCTCT
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
* * *
4731040 TTCTTTGGTGGTGTATAAGCT-GATGGCTTAGGCTTAGGCTTCTCC
1 TTCTTTGGTGGTGCATAAACTAG-TGGCTTAGGCTCAGGCTTCTCC
* * * * * *
4731085 TTCTTTGGTGGTTCATACACTGGTGGCTTGGGTTCAGGCCTT-TCT
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGG-CTTCTCC
* * * * * *
4731130 TTCTTTGGAGGTGTATAAACTGGTGACTTAGGCTCAGGCTTTTCT
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
* * * ** * * *
4731175 TTCTTTGGAGGTTCATATACCGGTGGTTTGGGTTCAGGC-T-T--
1 TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
* * *
4731216 TTCTTTGGTGATGTATAAAC-AGGTGGTTTAGGCTCAGGCTTCTCC
1 TTCTTTGGTGGTGCATAAACTA-GTGGCTTAGGCTCAGGCTTCTCC
*
4731261 TTCTTTGGTGGTTCATAAAC-AGGTGGCTTA
1 TTCTTTGGTGGTGCATAAACTA-GTGGCTTA
4731291 TGTTCATATG
Statistics
Matches: 307, Mismatches: 68, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
41 30 0.10
42 1 0.00
43 2 0.01
44 7 0.02
45 262 0.85
46 5 0.02
ACGTcount: A:0.15, C:0.18, G:0.28, T:0.39
Consensus pattern (45 bp):
TTCTTTGGTGGTGCATAAACTAGTGGCTTAGGCTCAGGCTTCTCC
Found at i:4730951 original size:90 final size:90
Alignment explanation
Indices: 4730842--4731289 Score: 586
Period size: 90 Copynumber: 5.0 Consensus size: 90
4730832 AACTAGAGGT
* * * * * * * *
4730842 TTGGGTTCTGGTTTTTCTTTCTTTGGAGGTGCATAAACTAGCGGTTTAGGCTCAAGCTTCTCCTT
1 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTAGTGGCTTAGGCTCAGGCTTCTCCTT
*
4730907 CTTTGGTGGTTCATACATAGGTGGC
66 CTTTGGTGGTTCATACACAGGTGGC
*
4730932 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCCTT
1 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTAGTGGCTTAGGCTCAGGCTTCTCCTT
*
4730997 CTTTGGTGGTTCATACACAAGTGGC
66 CTTTGGTGGTTCATACACAGGTGGC
* *
4731022 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAGCT-GATGGCTTAGGCTTAGGCTTCTCCT
1 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTAG-TGGCTTAGGCTCAGGCTTCTCCT
*
4731086 TCTTTGGTGGTTCATACACTGGTGGC
65 TCTTTGGTGGTTCATACACAGGTGGC
* * * * *
4731112 TTGGGTTCAGGCCTT-TCTTTCTTTGGAGGTGTATAAACTGGTGACTTAGGCTCAGGCTTTTCTT
1 TTGGGTTCAGG-CTTCTCTTTCTTTGGTGGTGTATAAACTAGTGGCTTAGGCTCAGGCTTCTCCT
* * * *
4731176 TCTTTGGAGGTTCATATACCGGTGGT
65 TCTTTGGTGGTTCATACACAGGTGGC
* *
4731202 TTGGGTTCAGG---CT-TTTCTTTGGTGATGTATAAAC-AGGTGGTTTAGGCTCAGGCTTCTCCT
1 TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTA-GTGGCTTAGGCTCAGGCTTCTCCT
*
4731262 TCTTTGGTGGTTCATAAACAGGTGGC
65 TCTTTGGTGGTTCATACACAGGTGGC
4731288 TT
1 TT
4731290 ATGTTCATAT
Statistics
Matches: 317, Mismatches: 36, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
86 63 0.20
87 1 0.00
89 1 0.00
90 248 0.78
91 4 0.01
ACGTcount: A:0.14, C:0.18, G:0.28, T:0.40
Consensus pattern (90 bp):
TTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTAGTGGCTTAGGCTCAGGCTTCTCCTT
CTTTGGTGGTTCATACACAGGTGGC
Found at i:4731067 original size:135 final size:135
Alignment explanation
Indices: 4730860--4731290 Score: 434
Period size: 135 Copynumber: 3.2 Consensus size: 135
4730850 TGGTTTTTCT
* * * * * * * *
4730860 TTCTTTGGAGGTGCATAAACTA-GCGGTTTAGGCTCAAGCTTCTCCTTCTTTGGTGGTTCATACA
1 TTCTTTGGTGGTTCATAAAC-AGGTGGCTTAGGCTCAGGCTTCTCTTTCTTTGGAGGTTCATATA
** *
4730924 TAGGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGC
65 CCGATGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGC
4730989 TTCTCC
130 TTCTCC
* * * * *
4730995 TTCTTTGGTGGTTCATACACAAGTGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGT-ATA-A
1 TTCTTTGGTGGTTCATAAACAGGTGGCTTAGGCTCAGGCTTCTCTTTCTTTGGAGGT-TCATATA
* * * * * *
4731058 GCTGATGGCTTAGGCTT-AGGCTTCTCCTTCTTTGGTGGT-TCATACACTGGTGGCTTGGGTTCA
65 -CCGATGGCTT-GGGTTCAGGCTTCTCTTTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCA
*
4731121 GGCCTT-TCT
127 GG-CTTCTCC
* * * *
4731130 TTCTTTGGAGGTGT-ATAAACTGGTGACTTAGGCTCAGGCTTTTCTTTCTTTGGAGGTTCATATA
1 TTCTTTGGTGGT-TCATAAACAGGTGGCTTAGGCTCAGGCTTCTCTTTCTTTGGAGGTTCATATA
* * * * *
4731194 CCGGTGGTTTGGGTTCAGG---CT-TTTCTTTGGTGATGTATAAACAGGTGGTTTAGGCTCAGGC
65 CCGATGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGC
4731255 TTCTCC
130 TTCTCC
4731261 TTCTTTGGTGGTTCATAAACAGGTGGCTTA
1 TTCTTTGGTGGTTCATAAACAGGTGGCTTA
4731291 TGTTCATATG
Statistics
Matches: 241, Mismatches: 42, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
130 4 0.02
131 57 0.24
132 3 0.01
134 8 0.03
135 159 0.66
136 10 0.04
ACGTcount: A:0.15, C:0.18, G:0.28, T:0.39
Consensus pattern (135 bp):
TTCTTTGGTGGTTCATAAACAGGTGGCTTAGGCTCAGGCTTCTCTTTCTTTGGAGGTTCATATAC
CGATGGCTTGGGTTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCT
TCTCC
Found at i:4732458 original size:35 final size:35
Alignment explanation
Indices: 4732412--4732480 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
4732402 TCAAATTAAC
4732412 AAAAAAAAAACTAGACAAAAATGAAATTTAAAACA
1 AAAAAAAAAACTAGACAAAAATGAAATTTAAAACA
*
4732447 AAAAAAAAAACTAGACAAAAATGAAATTTGAAAC
1 AAAAAAAAAACTAGACAAAAATGAAATTTAAAAC
4732481 TACCTGTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.70, C:0.09, G:0.07, T:0.14
Consensus pattern (35 bp):
AAAAAAAAAACTAGACAAAAATGAAATTTAAAACA
Found at i:4732464 original size:17 final size:17
Alignment explanation
Indices: 4732412--4732467 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
4732402 TCAAATTAAC
4732412 AAAAAAAAAACTAGACA
1 AAAAAAAAAACTAGACA
** ** *
4732429 AAAATGAAATTTAAAACA
1 AAAAAAAAAACT-AGACA
4732447 AAAAAAAAAACTAGACA
1 AAAAAAAAAACTAGACA
4732464 AAAA
1 AAAA
4732468 TGAAATTTGA
Statistics
Matches: 28, Mismatches: 10, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.75, C:0.09, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAAAAAAACTAGACA
Found at i:4734209 original size:106 final size:106
Alignment explanation
Indices: 4734024--4734236 Score: 293
Period size: 106 Copynumber: 2.0 Consensus size: 106
4734014 AAATATCGCT
* * **
4734024 AATTAAATCCAATTTTATAAAAAATGCCTTTGTATTTCAAGTTAATCGGGAAGAAAATCATGTGT
1 AATTAAATCAAATTTTATAAAAAATGCCTTCGTATTTCAAGTTAATCGGGAAGAAAATCATGCCT
* *
4734089 CGTAAGTTAGGGCACGATGTCTCGAATTCCCAAAAATAAGA
66 CATAAATTAGGGCACGATGTCTCGAATTCCCAAAAATAAGA
* * * ** *
4734130 AATTAAATCAAATTTTATGAAGAATGTCTTCGTATTTTGAGTTAATCTGGAAGAAAATCATGCC-
1 AATTAAATCAAATTTTATAAAAAATGCCTTCGTATTTCAAGTTAATCGGGAAGAAAATCATGCCT
*
4734194 CTATAAATTAGGGCACGATGTCTCGAATTCCCGAAAATAAGA
66 C-ATAAATTAGGGCACGATGTCTCGAATTCCCAAAAATAAGA
4734236 A
1 A
4734237 TACTCATTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
105 1 0.01
106 92 0.99
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (106 bp):
AATTAAATCAAATTTTATAAAAAATGCCTTCGTATTTCAAGTTAATCGGGAAGAAAATCATGCCT
CATAAATTAGGGCACGATGTCTCGAATTCCCAAAAATAAGA
Found at i:4737883 original size:3 final size:3
Alignment explanation
Indices: 4737875--4737906 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4737865 GAAAAATCAA
4737875 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4737907 ACAATAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4739563 original size:4 final size:4
Alignment explanation
Indices: 4739554--4739625 Score: 63
Period size: 4 Copynumber: 18.0 Consensus size: 4
4739544 TATGGAACTC
* * * * * * *
4739554 TGTG TGTG TGTG TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* *
4739602 TGTG TGTG TGTG TTTG TGTT TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG
4739626 AGTTTCAATC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 62 1.00
ACGTcount: A:0.00, C:0.10, G:0.47, T:0.43
Consensus pattern (4 bp):
TGTG
Found at i:4739608 original size:12 final size:12
Alignment explanation
Indices: 4739557--4739614 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
4739547 GGAACTCTGT
4739557 GTGTGTGTGTGC
1 GTGTGTGTGTGC
* *
4739569 GTGCGTGCGTGC
1 GTGTGTGTGTGC
* *
4739581 GTGCGTGCGTGC
1 GTGTGTGTGTGC
*
4739593 GTGTGTGTGTGT
1 GTGTGTGTGTGC
4739605 GTGTGTGTGT
1 GTGTGTGTGT
4739615 TTGTGTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.00, C:0.12, G:0.50, T:0.38
Consensus pattern (12 bp):
GTGTGTGTGTGC
Found at i:4745594 original size:23 final size:23
Alignment explanation
Indices: 4745545--4745616 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
4745535 AAGAATAACC
* * *
4745545 GAAAGAAGAAGAAGAAAGAGAAA
1 GAAAGAAGAAAAAAAAACAGAAA
* *
4745568 GAAAGAAGAAAAAAAAACATAAG
1 GAAAGAAGAAAAAAAAACAGAAA
* *
4745591 GAAAGAAGGAAAACAATACA-AAA
1 GAAAGAA-GAAAAAAAAACAGAAA
4745614 GAA
1 GAA
4745617 GAACTAACAT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 30 0.75
24 10 0.25
ACGTcount: A:0.71, C:0.04, G:0.22, T:0.03
Consensus pattern (23 bp):
GAAAGAAGAAAAAAAAACAGAAA
Found at i:4747611 original size:4 final size:4
Alignment explanation
Indices: 4747604--4747631 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
4747594 TATATTAATG
4747604 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
4747632 GATATGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:4752042 original size:45 final size:45
Alignment explanation
Indices: 4751978--4752284 Score: 307
Period size: 45 Copynumber: 6.8 Consensus size: 45
4751968 ACACTGGTGG
* * * *
4751978 CTTCTTTGAAGGCTT-ATAAACTGGTGGTTTGGGTTCTGGTTTTTC
1 CTTCTTTGGAGG-TTCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
* * *
4752023 TTTCTTTGGAGGTACATAAACTGGTGGTTTAGGCTCAGGCTTTTC
1 CTTCTTTGGAGGTTCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
* * * * *
4752068 CTTCTTTGGTGGTTCATACA-TCGGTGGCTTGGGTTCATGCTTTTC
1 CTTCTTTGGAGGTTCATAAACT-GGTGGTTTAGGTTCAGGCTTTTC
* * *
4752113 TTTCTTTGGTGGTGT-ATAAACTGGTGGTTTAGGCTCAGGCTTTTC
1 CTTCTTTGGAGGT-TCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
* * *
4752158 CTTCTTTGGAGGTTCATATACTGGTGGTTTCGGTTCAGGCTTATC
1 CTTCTTTGGAGGTTCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
* * * *
4752203 TTTCTTTGGAAGTGT-ATAAACTGGTGGCTTAGGTTCAGGCTTCTC
1 CTTCTTTGGAGGT-TCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
* * * * *
4752248 CTTCTTTGGTGGTTCATAGACCGGAGGTTTATGTTCA
1 CTTCTTTGGAGGTTCATAAACTGGTGGTTTAGGTTCA
4752285 TATGGTGGCG
Statistics
Matches: 214, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
44 4 0.02
45 207 0.97
46 3 0.01
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.43
Consensus pattern (45 bp):
CTTCTTTGGAGGTTCATAAACTGGTGGTTTAGGTTCAGGCTTTTC
Found at i:4752229 original size:135 final size:135
Alignment explanation
Indices: 4751992--4752260 Score: 344
Period size: 135 Copynumber: 2.0 Consensus size: 135
4751982 TTTGAAGGCT
* * * * *
4751992 TATAAACTGGTGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTACATAAACTGGTGGTTTAGGC
1 TATAAACTGGTGGTTTAGGCTCAGGCTTTTCCTTCTTTGGAGGTACATAAACTGGTGGTTTAGGC
* ** * * * * *
4752057 TCAGGCTTTTCCTTCTTTGGTGGTTCATACATCGGTGGCTTGGGTTCATGCTTTTCTTTCTTTGG
66 TCAGGCTTATCCTTCTTTGGAAGTTCATAAATCGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGG
4752122 TGGTG
131 TGGTG
* * * *
4752127 TATAAACTGGTGGTTTAGGCTCAGGCTTTTCCTTCTTTGGAGGTTCATATACTGGTGGTTTCGGT
1 TATAAACTGGTGGTTTAGGCTCAGGCTTTTCCTTCTTTGGAGGTACATAAACTGGTGGTTTAGGC
*
4752192 TCAGGCTTATCTTTCTTTGGAAGTGT-ATAAA-CTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTT
66 TCAGGCTTATCCTTCTTTGGAAGT-TCATAAATC-GGTGGCTTAGGTTCAGGCTTCTCCTTCTTT
4752255 GGTGGT
129 GGTGGT
4752261 TCATAGACCG
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
134 1 0.01
135 112 0.98
136 1 0.01
ACGTcount: A:0.13, C:0.16, G:0.28, T:0.43
Consensus pattern (135 bp):
TATAAACTGGTGGTTTAGGCTCAGGCTTTTCCTTCTTTGGAGGTACATAAACTGGTGGTTTAGGC
TCAGGCTTATCCTTCTTTGGAAGTTCATAAATCGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGG
TGGTG
Found at i:4752277 original size:90 final size:90
Alignment explanation
Indices: 4752000--4752277 Score: 385
Period size: 90 Copynumber: 3.1 Consensus size: 90
4751990 CTTATAAACT
* * **
4752000 GGTGGTTTGGGTTCTGGTTTTTCTTTCTTTGGAGGTACATAAACTGGTGGTTTAGGCTCAGGCTT
1 GGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGTATAAACTGGTGGTTTAGGCTCAGGCTT
*
4752065 TTCCTTCTTTGGTGGTTCATACATC
66 TTCCTTCTTTGGTGGTTCATACACC
* * *
4752090 GGTGGCTTGGGTTCATGCTTTTCTTTCTTTGGTGGTGTATAAACTGGTGGTTTAGGCTCAGGCTT
1 GGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGTATAAACTGGTGGTTTAGGCTCAGGCTT
* * *
4752155 TTCCTTCTTTGGAGGTTCATATACT
66 TTCCTTCTTTGGTGGTTCATACACC
* * * * *
4752180 GGTGGTTTCGGTTCAGGCTTATCTTTCTTTGGAAGTGTATAAACTGGTGGCTTAGGTTCAGGCTT
1 GGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGTATAAACTGGTGGTTTAGGCTCAGGCTT
* *
4752245 CTCCTTCTTTGGTGGTTCATAGACC
66 TTCCTTCTTTGGTGGTTCATACACC
*
4752270 GGAGGTTT
1 GGTGGTTT
4752278 ATGTTCATAT
Statistics
Matches: 164, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 164 1.00
ACGTcount: A:0.13, C:0.16, G:0.28, T:0.43
Consensus pattern (90 bp):
GGTGGTTTGGGTTCAGGCTTTTCTTTCTTTGGAGGTGTATAAACTGGTGGTTTAGGCTCAGGCTT
TTCCTTCTTTGGTGGTTCATACACC
Done.