Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 150 of 295
Found at i:51139385 original size:186 final size:187
Alignment explanation
Indices: 51139054--51139521 Score: 775
Period size: 186 Copynumber: 2.5 Consensus size: 187
51139044 TGAATGATAG
51139054 TAAGGCCTAATGGCCGA---GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
51139116 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
51139181 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATGTGA
131 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATGTGA
*
51139237 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
51139302 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
51139367 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATGTGA
* * * * * *
51139425 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
51139489 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
51139522 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
183 16 0.06
186 154 0.58
187 67 0.25
188 29 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (187 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATGTGA
Found at i:51139696 original size:37 final size:37
Alignment explanation
Indices: 51139640--51139718 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51139630 CCGAGCTCTA
* *
51139640 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51139677 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51139714 AAGAC
1 AAGAC
51139719 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51153026 original size:7 final size:7
Alignment explanation
Indices: 51153014--51153046 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
51153004 TCAAACTACC
51153014 TTTTATT
1 TTTTATT
51153021 TTTTATT
1 TTTTATT
51153028 TATTTA-T
1 T-TTTATT
51153035 TTTTATT
1 TTTTATT
51153042 TTTTA
1 TTTTA
51153047 GCAGATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:51157995 original size:39 final size:39
Alignment explanation
Indices: 51157941--51158018 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
51157931 GGCACCAATG
51157941 TTAGTTTAGCTAGAATCGAGTAAAGAATTTGTGATTTAT
1 TTAGTTTAGCTAGAATCGAGTAAAGAATTTGTGATTTAT
51157980 TTAGTTTAGCTAGAATCGAGTAAAGAATTTGTGATTTAT
1 TTAGTTTAGCTAGAATCGAGTAAAGAATTTGTGATTTAT
51158019 AGTGACACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (39 bp):
TTAGTTTAGCTAGAATCGAGTAAAGAATTTGTGATTTAT
Found at i:51161375 original size:40 final size:40
Alignment explanation
Indices: 51161296--51161551 Score: 313
Period size: 40 Copynumber: 6.5 Consensus size: 40
51161286 CGGATGATAA
* *
51161296 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
51161336 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
51161376 CCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
51161416 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
51161455 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
51161495 CTGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
51161535 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
51161552 ATACTTGGGT
Statistics
Matches: 181, Mismatches: 31, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 47 0.26
40 131 0.72
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:51161502 original size:79 final size:80
Alignment explanation
Indices: 51161296--51161551 Score: 385
Period size: 79 Copynumber: 3.2 Consensus size: 80
51161286 CGGATGATAA
* *
51161296 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
51161361 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
*
51161376 CCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
51161441 TGCTAGTGATT-TAT
66 TGCTAGTGATTATAT
* * * * *
51161455 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAGGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
*
51161520 TGCGAGTTG-TTATAT
66 TGCTAG-TGATTATAT
51161535 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
51161552 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 82 0.50
80 80 0.49
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:51164832 original size:41 final size:41
Alignment explanation
Indices: 51164769--51164865 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 41
51164759 GCGGATACTT
* * *
51164769 GTTAACTTGTGTGAATGGCACCATGCAGCTACGTTCGGACA
1 GTTAGCTTGTGTGAACGACACCATGCAGCTACGTTCGGACA
* * * *
51164810 GTTAGCTTGTGTGAGCGACACCATGTAGCTATGTTCGGACT
1 GTTAGCTTGTGTGAACGACACCATGCAGCTACGTTCGGACA
51164851 GTTAGCTTGTGTGAA
1 GTTAGCTTGTGTGAA
51164866 TAGACCCATT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
GTTAGCTTGTGTGAACGACACCATGCAGCTACGTTCGGACA
Found at i:51169888 original size:49 final size:48
Alignment explanation
Indices: 51169749--51170214 Score: 766
Period size: 47 Copynumber: 9.8 Consensus size: 48
51169739 TTAGGATTCT
* *
51169749 ATGTGATGGATGTGAACA-TGA-ATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGATATATATGTGATAAGGCCTAATGGCCG
51169796 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
51169843 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
51169892 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
51169941 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
51169988 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
*
51170037 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTATTGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
51170086 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
* *
51170133 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
* * *
51170180 ACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAG
51170215 TCCCGAAGGG
Statistics
Matches: 404, Mismatches: 9, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 212 0.52
49 191 0.47
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
Found at i:51169936 original size:145 final size:145
Alignment explanation
Indices: 51169749--51170214 Score: 811
Period size: 145 Copynumber: 3.3 Consensus size: 145
51169739 TTAGGATTCT
* *
51169749 ATGTGATGGATGTGAACA-TG-A-ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51169811 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
65 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51169876 TAAGGCCTAATGGCCG
130 TAAGGCCTAATGGCCG
51169892 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51169957 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
51170022 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
*
51170037 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTATTGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51170102 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* *
51170165 AAGGCCTAATAGCCA
131 AAGGCCTAATGGCCG
* *
51170180 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51170215 TCCCGAAGGG
Statistics
Matches: 313, Mismatches: 7, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
141 10 0.03
142 2 0.01
143 64 0.20
144 1 0.00
145 236 0.75
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCG
Found at i:51170387 original size:36 final size:36
Alignment explanation
Indices: 51170333--51170409 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
51170323 CTGAGCTCTA
* * *
51170333 AAGACCGATGACTACGTGTGGGGATTTTCTCCGGGT
1 AAGACCGATAACTACGTGTGGAGATTATCTCCGGGT
* *
51170369 AAGACCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCGATAACTACGTGTGGAGATTATCTCCGGGT
51170405 AAGAC
1 AAGAC
51170410 TTCGTAAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (36 bp):
AAGACCGATAACTACGTGTGGAGATTATCTCCGGGT
Found at i:51171901 original size:40 final size:40
Alignment explanation
Indices: 51171621--51171889 Score: 429
Period size: 39 Copynumber: 6.8 Consensus size: 40
51171611 GAGAATTGAG
51171621 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTC-TGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51171660 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51171700 AG-GATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51171738 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51171778 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
51171817 AGTGATATATCCGTGCTAAACCCCGAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAA-GAGCATTCGTGCT
* * * *
51171858 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
51171890 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
38 29 0.14
39 88 0.41
40 63 0.30
41 33 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:51178243 original size:40 final size:40
Alignment explanation
Indices: 51178168--51178309 Score: 171
Period size: 40 Copynumber: 3.5 Consensus size: 40
51178158 CTCGAATGAT
* *
51178168 ATCC-GGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTAA
*
51178208 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTAA
* * * *
51178248 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
* *
51178288 ATCCGGGTTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
51178310 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 65 0.73
41 22 0.25
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
Found at i:51181590 original size:27 final size:27
Alignment explanation
Indices: 51181560--51181708 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
51181550 ACCCTTAATT
*
51181560 GGGTAAAATGATCAAAATAACCCCATA
1 GGGTAAAATGACCAAAATAACCCCATA
* *
51181587 GGGTAAAATGACCGAAAT-ACCTTCATA
1 GGGTAAAATGACCAAAATAACC-CCATA
*
51181614 GGGTAAAATGACCAAAATACCCCCATA
1 GGGTAAAATGACCAAAATAACCCCATA
* * *
51181641 AGGTAAAATGATCGAAATAACCCCATA
1 GGGTAAAATGACCAAAATAACCCCATA
*
51181668 GGGTAAAATGACCTAAAT-ACCCC-TA
1 GGGTAAAATGACCAAAATAACCCCATA
* *
51181693 GGATAAAATAACCAAA
1 GGGTAAAATGACCAAA
51181709 GTATCCCAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
25 15 0.14
26 8 0.08
27 79 0.76
28 2 0.02
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCAAAATAACCCCATA
Found at i:51182286 original size:34 final size:35
Alignment explanation
Indices: 51182229--51182302 Score: 105
Period size: 34 Copynumber: 2.1 Consensus size: 35
51182219 AGGTGGTCTT
*
51182229 AGGCCCAGACTGTTTACTATTACTAAAATGGGCTA
1 AGGCCCAGACTGTTTACTATTACTAAAATAGGCTA
* * *
51182264 AGGCCCAGACTG-TTACTGTTACTAATATAGGCTT
1 AGGCCCAGACTGTTTACTATTACTAAAATAGGCTA
51182298 AGGCC
1 AGGCC
51182303 TAGAATGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
34 23 0.66
35 12 0.34
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (35 bp):
AGGCCCAGACTGTTTACTATTACTAAAATAGGCTA
Found at i:51189200 original size:29 final size:30
Alignment explanation
Indices: 51189167--51189224 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
51189157 AAACCAATTT
*
51189167 TCGA-GCATAGGGGTAAAATGGTCATTTTG
1 TCGAGGCATAGGGGCAAAATGGTCATTTTG
**
51189196 TCGAGGTTTAGGGGCAAAATGGTCATTTT
1 TCGAGGCATAGGGGCAAAATGGTCATTTT
51189225 ATTGAAGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (30 bp):
TCGAGGCATAGGGGCAAAATGGTCATTTTG
Found at i:51189764 original size:47 final size:46
Alignment explanation
Indices: 51189711--51189827 Score: 137
Period size: 47 Copynumber: 2.5 Consensus size: 46
51189701 AGACATAGGA
*
51189711 CATGTCTGGGACATGCATCGGCTACAAGATGAT-AGTCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCT-CAAGAT-ATGAGCCAGTGTAAGAC
* * **
51189758 CATGTCTGGGAGATGGCATCGACTTGAGATATGAGCCAGTGTAAGAC
1 CATGTCTGGGACAT-GCATCGGCTCAAGATATGAGCCAGTGTAAGAC
*
51189805 CATGTCTGGGACACGGCATCGGC
1 CATGTCTGGGACA-TGCATCGGC
51189828 ACCTTACCCA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
46 2 0.03
47 49 0.83
48 8 0.14
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
CATGTCTGGGACATGCATCGGCTCAAGATATGAGCCAGTGTAAGAC
Found at i:51189812 original size:130 final size:130
Alignment explanation
Indices: 51189579--51189817 Score: 338
Period size: 130 Copynumber: 1.8 Consensus size: 130
51189569 GCTAGTGTAA
* **
51189579 GACATGTCTAGGACATGCATTGGCCACATTATGAGATCCAGTGTAAGACCATGTCTGGGACATGG
1 GACATGTCTAGGACATGCATCGGCCACAAGATGAGATCCAGTGTAAGACCATGTCTGGGACATGG
* * *
51189644 CATTGGCATTGAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACATAG
66 CATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACATAG
* * * *
51189709 GACATGTCTGGGACATGCATCGGCTACAAGATGATAGT-CAGTGTAAGACCATGTCTGGGAGATG
1 GACATGTCTAGGACATGCATCGGCCACAAGATGAGA-TCCAGTGTAAGACCATGTCTGGGACATG
* *
51189773 GCATCGAC-TTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACA
65 GCATCGACATTGAGACAAGAGCCAGTGTAAGA-CATGTCTGGGACA
51189818 CGGCATCGGC
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
129 20 0.21
130 74 0.78
131 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (130 bp):
GACATGTCTAGGACATGCATCGGCCACAAGATGAGATCCAGTGTAAGACCATGTCTGGGACATGG
CATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACATAG
Found at i:51190988 original size:21 final size:20
Alignment explanation
Indices: 51190964--51191002 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
51190954 TCGAGTTGGT
*
51190964 CACACGGGTGTGTTGCCCTTC
1 CACACGGGCGTG-TGCCCTTC
51190985 CACACGGGCGTGTGCCCT
1 CACACGGGCGTGTGCCCT
51191003 GTCTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTTC
Found at i:51196364 original size:40 final size:39
Alignment explanation
Indices: 51196320--51196435 Score: 160
Period size: 40 Copynumber: 2.9 Consensus size: 39
51196310 AGTATTGTAC
* *
51196320 ATAGCCAAAGCTATCTCAAATAGCACACTAAGTGCCATAT
1 ATAGCCAAAGCTATGTCGAAT-GCACACTAAGTGCCATAT
* *
51196360 ATAGCTAAAGATATGTCGAATTGCACACTAAGTGCCATAT
1 ATAGCCAAAGCTATGTCGAA-TGCACACTAAGTGCCATAT
* *
51196400 ATAGCCAAAGCTATGTCGTATGCATACTAAGTGCCA
1 ATAGCCAAAGCTATGTCGAATGCACACTAAGTGCCA
51196436 CAAATAACTG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 15 0.22
40 51 0.76
41 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (39 bp):
ATAGCCAAAGCTATGTCGAATGCACACTAAGTGCCATAT
Found at i:51203447 original size:22 final size:22
Alignment explanation
Indices: 51203418--51203465 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
51203408 CATGTATCTT
51203418 AATG-ATTGATGATAGATTATG
1 AATGTATTGATGATAGATTATG
51203439 AATGTATTGATGATAGATTATG
1 AATGTATTGATGATAGATTATG
51203461 AATGT
1 AATGT
51203466 GAAATGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (22 bp):
AATGTATTGATGATAGATTATG
Found at i:51208488 original size:27 final size:26
Alignment explanation
Indices: 51208444--51208495 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51208434 CTCGCTGCAA
*
51208444 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
51208471 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51208496 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51209441 original size:22 final size:22
Alignment explanation
Indices: 51209412--51209459 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
51209402 CATGTATCTT
51209412 AATG-ATTGATGATAGATTATG
1 AATGTATTGATGATAGATTATG
51209433 AATGTATTGATGATAGATTATG
1 AATGTATTGATGATAGATTATG
51209455 AATGT
1 AATGT
51209460 GAAATGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (22 bp):
AATGTATTGATGATAGATTATG
Found at i:51213603 original size:26 final size:27
Alignment explanation
Indices: 51213557--51213608 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51213547 GGAGTACCGA
*
51213557 TTTGCCCCTGTAGGGTAAAATGACTAT
1 TTTGCCCCTGTAGCGTAAAATGACTAT
51213584 TTTGCCCCTTGT-GCGT-AAATGACTA
1 TTTGCCCC-TGTAGCGTAAAATGACTA
51213609 ACTTGTGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 11 0.48
28 3 0.13
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
TTTGCCCCTGTAGCGTAAAATGACTAT
Found at i:51215448 original size:27 final size:26
Alignment explanation
Indices: 51215404--51215455 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51215394 CTCGCTGCAA
*
51215404 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
51215431 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51215456 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51215509 original size:31 final size:32
Alignment explanation
Indices: 51215471--51215532 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
51215461 CTCGCTGCAA
* *
51215471 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
51215502 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
51215533 ATGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:51230491 original size:48 final size:48
Alignment explanation
Indices: 51230416--51230642 Score: 241
Period size: 48 Copynumber: 4.8 Consensus size: 48
51230406 CACATGGTAG
* * * *
51230416 GATGCCAATGCCATATCCCAGATATGGTCTCACATGGGGTCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * **
51230464 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATTATAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
51230512 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
51230560 GATACCGAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
51230603 GATGCCAAAGCCATGTACCAAACATGGTCTTACATGGGAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
51230643 TGTACATAAC
Statistics
Matches: 144, Mismatches: 28, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
42 1 0.01
43 32 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.74
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:51231903 original size:13 final size:13
Alignment explanation
Indices: 51231885--51231930 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
51231875 ATTCGGGGTA
51231885 TAAAATTTTCTTT
1 TAAAATTTTCTTT
* *
51231898 TAAAATTAAT-TTA
1 TAAAATT-TTCTTT
51231911 TAAAATTTTCTTT
1 TAAAATTTTCTTT
51231924 TAAAATT
1 TAAAATT
51231931 AATTTATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 1 0.04
13 25 0.93
14 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (13 bp):
TAAAATTTTCTTT
Found at i:51231912 original size:26 final size:26
Alignment explanation
Indices: 51231883--51231937 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
51231873 GAATTCGGGG
51231883 TATAAAATTTTCTTTTAAAATTAATT
1 TATAAAATTTTCTTTTAAAATTAATT
51231909 TATAAAATTTTCTTTTAAAATTAATT
1 TATAAAATTTTCTTTTAAAATTAATT
51231935 TAT
1 TAT
51231938 TTACATTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAAAATTTTCTTTTAAAATTAATT
Found at i:51243753 original size:46 final size:46
Alignment explanation
Indices: 51243681--51243890 Score: 221
Period size: 46 Copynumber: 4.5 Consensus size: 46
51243671 AACCCGCCCC
* *
51243681 TAAGTGAACTCGGATTCAACTAAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
* *
51243727 TAAGTGAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
* * * *
51243773 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCA
* * * * *
51243821 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
51243866 TAAGTGAACTCGGACTTAACTCAAC
1 TAAGTGAACTCGGACTCAACTCAAC
51243891 AAGTTCGAAT
Statistics
Matches: 135, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 1 0.01
45 2 0.01
46 90 0.67
47 27 0.20
48 3 0.02
49 1 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
Found at i:51243896 original size:93 final size:93
Alignment explanation
Indices: 51243732--51243902 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
51243722 ATCCATAAGT
*
51243732 GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
** *
51243797 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGAATGCCTAGTTACATTTCAC
* * *
51243825 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTTAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51243889 ACAAGTTCGAATGC
65 ACAAGTTCGAATGC
51243903 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGAATGCCTAGTTACATTTCAC
Found at i:51249097 original size:48 final size:48
Alignment explanation
Indices: 51248949--51249098 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 48
51248939 CACATGGTAG
* * * *
51248949 GATGCCAATGCCATA-TCCCATATATGGTCTTACATAGGACCACATATC
1 GATGCCAATGCCA-AGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** **
51248997 GATGCCAATGCCATGTCCCAGACATGGTCTTATATGTGATCGTAGGTC
1 GATGCCAATGCCAAGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
51249045 GATGCCAATGGCAAGTCCTAGACATGGTCCTACATGGGATCACATATT
1 GATGCCAATGCCAAGTCCCAGACATGGTCTTACATGGGATCACATATC
51249093 GATGCC
1 GATGCC
51249099 GATAGACTAG
Statistics
Matches: 79, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCAAGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:51251969 original size:48 final size:48
Alignment explanation
Indices: 51251767--51252132 Score: 300
Period size: 48 Copynumber: 7.6 Consensus size: 48
51251757 TAAAATGCCA
* * * *
51251767 ATGCGATGTCCCGGACATGGTCCTACAATGGCTCTCATATATCG-GTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTG-GCCG
* * * * * ** *
51251817 ATACCATGTCCTAGACATGGTCTTACATTGACACAT-ATAACAAT-GTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAA-TGTGGCCG
* * * * * *
51251865 ATGCCATGTTCCAAACATGGTCTTACAAT-GCTCGCATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
51251912 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* ** * * *
51251960 ATGCTATGTCCCAGACATGGTCTTACACAAGCACACAT-ATCAAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--GTGGCCG
*
51252008 ATGTCC-TGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTGGCCG
1 ATG-CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* * * *
51252056 ATGCCATGTCCCAGACATGGTCTTACACTGACACACAT-ATCAAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--GTGGCCG
* *
51252104 ATGCCATGTCCTAGACATGTTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
51252133 AGCACACATA
Statistics
Matches: 252, Mismatches: 50, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
47 41 0.16
48 175 0.69
49 6 0.02
50 29 0.12
51 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
Found at i:51252033 original size:96 final size:96
Alignment explanation
Indices: 51251863--51252132 Score: 393
Period size: 96 Copynumber: 2.8 Consensus size: 96
51251853 ATAACAATGT
* * * * ** *
51251863 CGATGCCATGTTCCAAACATGGTCTTACA-ATGCTCGCATATTGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACATGCACACATATCAATGCCGATGCCATGTCCCAGA
51251927 CATGGTCTTACACTGGCTCTCATAATGTGGC
66 CATGGTCTTACACTGGCTCTCATAATGTGGC
* *
51251958 CGATGCTATGTCCCAGACATGGTCTTACACAAGCACACATATCAATGCCGATGTCC-TGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACATGCACACATATCAATGCCGATG-CCATGTCCCAG
*
51252022 ACATGGTCTTACACTGGCTCTCGTAATGTGGC
65 ACATGGTCTTACACTGGCTCTCATAATGTGGC
*
51252054 CGATGCCATGTCCCAGACATGGTCTTACAC-TGACACACATATCAATGCCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACATG-CACACATATCAATGCCGATGCCATGTCCCAG
*
51252118 ACATGTTCTTACACT
65 ACATGGTCTTACACT
51252133 AGCACACATA
Statistics
Matches: 157, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
95 29 0.18
96 126 0.80
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACATGCACACATATCAATGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:51252113 original size:144 final size:142
Alignment explanation
Indices: 51251812--51252146 Score: 417
Period size: 144 Copynumber: 2.3 Consensus size: 142
51251802 CATATATCGG
* * * *
51251812 TGCCGATACCATGTCCTAGACATGGTCTTACA-TTG-ACACATATAACAATGTCGATGCCATGTT
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATAT--CAATGCCGATGCCATGTC
*
51251875 CCAAACATGGTCTTACAATGCTCGCATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACAC
64 CCAAACATGGTCTTACAATGCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACAC
* * * *
51251940 TGGCTCTCATAATG
129 TGACACACATAATA
* * *
51251954 TGGCCGATGCTATGTCCCAGACATGGTCTTACACAAGCACACATATCAATGCCGATGTCC-TGTC
1 T-GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATGCCGATG-CCATGTC
* * * * *
51252018 CCAGACATGGTCTTACACTGGCTCTCGTAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACA
64 CCAAACATGGTCTTACAAT-GCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACA
51252083 CTGACACACAT-ATCAA
128 CTGACACACATAAT--A
*
51252099 TGCCGATGCCATGTCCTAGACATGTTCTTACACTAGCACACATATCAA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAA
51252147 CCAAATGTCT
Statistics
Matches: 165, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
142 1 0.01
143 60 0.36
144 95 0.58
145 9 0.05
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (142 bp):
TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCC
AAACATGGTCTTACAATGCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTG
ACACACATAATA
Found at i:51252139 original size:48 final size:47
Alignment explanation
Indices: 51251812--51252146 Score: 313
Period size: 48 Copynumber: 7.0 Consensus size: 47
51251802 CATATATCGG
* * *
51251812 TGCCGATACCATGTCCTAGACATGGTCTTACATTG-ACACATATAACAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATAT--CAA
* * * * * * **
51251860 TGTCGATGCCATGTTCCAAACATGGTCTTACAATGCTCGCATATTGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCAA
* * * *
51251907 GGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA--ATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCA-A
* *
51251954 TGGCCGATGCTATGTCCCAGACATGGTCTTACACAAGCACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACAC-TGCACACATATCAA
* * * *
51252003 TGCCGATGTCC-TGTCCCAGACATGGTCTTACACTGGCTCTCGTA--ATG
1 TGCCGATG-CCATGTCCCAGACATGGTCTTACACT-GCACACATATCA-A
51252050 TGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTG-CACACATATCAA
* *
51252099 TGCCGATGCCATGTCCTAGACATGTTCTTACACTAGCACACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCAA
51252147 CCAAATGTCT
Statistics
Matches: 235, Mismatches: 36, Indels: 32
0.78 0.12 0.11
Matches are distributed among these distances:
46 1 0.00
47 34 0.14
48 188 0.80
49 10 0.04
50 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCAA
Found at i:51258433 original size:27 final size:27
Alignment explanation
Indices: 51258398--51258475 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
51258388 ATATTTTAGT
* *
51258398 TTACCAAATTACCGAAATACCCTTAAT
1 TTACAAAATTACCGAAATACCCTTAAG
** * * * *
51258425 TTGTAAAATTTCCAAAATACCCCTGAG
1 TTACAAAATTACCGAAATACCCTTAAG
*
51258452 TTACAAAATTACAGAAATACCCTT
1 TTACAAAATTACCGAAATACCCTT
51258476 GACTTTCTAA
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.29
Consensus pattern (27 bp):
TTACAAAATTACCGAAATACCCTTAAG
Found at i:51258512 original size:56 final size:56
Alignment explanation
Indices: 51258395--51258532 Score: 147
Period size: 56 Copynumber: 2.5 Consensus size: 56
51258385 AGAATATTTT
* * * * * *
51258395 AGTTTACCAAATTACCGAAATACCCTT-AATTTGTAAAATTTCCAAAATACCCCTG
1 AGTTTACAAAATTACAGAAATACCCTTGAATTTCTAAAAATTACAAAATACCACTG
* * *
51258450 AG-TTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTG
1 AGTTTACAAAATTACAGAAATACCCTTGAATTTCTAAAAATTACA-AAATACCACTG
* *
51258506 -GTTTACAAAATTACTGAAATACACTTG
1 AGTTTACAAAATTACAGAAATACCCTTG
51258533 GTTTGTAGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
54 22 0.32
55 15 0.22
56 32 0.46
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (56 bp):
AGTTTACAAAATTACAGAAATACCCTTGAATTTCTAAAAATTACAAAATACCACTG
Found at i:51258524 original size:27 final size:27
Alignment explanation
Indices: 51258452--51258536 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
51258442 TACCCCTGAG
* * *
51258452 TTACAAAATTACAGAAATACCCTTGACT
1 TTACAAAATTACTGAAATACCATTG-GT
51258480 TT-CTAAAAATTA-TAGAAATACCATTGGT
1 TTAC--AAAATTACT-GAAATACCATTGGT
51258508 TTACAAAATTACTGAAATA-CACTTGGT
1 TTACAAAATTACTGAAATACCA-TTGGT
51258535 TT
1 TT
51258537 GTAGATTTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
26 2 0.04
27 21 0.44
28 6 0.12
29 19 0.40
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.34
Consensus pattern (27 bp):
TTACAAAATTACTGAAATACCATTGGT
Found at i:51259498 original size:25 final size:25
Alignment explanation
Indices: 51259465--51259559 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
51259455 AGGAAGTGCT
*
51259465 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51259490 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51259515 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51259540 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
51259560 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51259766 original size:42 final size:42
Alignment explanation
Indices: 51259707--51259798 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
51259697 TAGTCTCACC
*
51259707 AAATGGGCTTTCATACATTCATTGATATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
* * *
51259749 AAATGGGCTTGCATACATTCTTTTATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
51259791 AAATGGGC
1 AAATGGGC
51259799 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:51259857 original size:31 final size:31
Alignment explanation
Indices: 51259822--51259905 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
51259812 CGTTAACAAT
*
51259822 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
51259853 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51259884 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
51259906 TCAAGCCTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51263941 original size:47 final size:47
Alignment explanation
Indices: 51263882--51264255 Score: 597
Period size: 47 Copynumber: 7.9 Consensus size: 47
51263872 TAATATGGCG
* *
51263882 TAATGACCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
51263929 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
51263976 TAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51264023 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51264069 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
51264118 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
51264165 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
51264212 GAGTGGCCAACGTGATGGATGTGAAATTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51264256 TCCCGAAGGG
Statistics
Matches: 305, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 33 0.11
47 226 0.74
48 12 0.04
49 34 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51264236 original size:189 final size:187
Alignment explanation
Indices: 51263882--51264253 Score: 618
Period size: 189 Copynumber: 2.0 Consensus size: 187
51263872 TAATATGGCG
51263882 TAATGACCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGACCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51263947 ATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATAT
66 ATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATAT
* * * * *
51264012 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCC
131 GTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAGGCC
* *
51264069 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGACCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
51264134 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64 GAATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
* * *
51264199 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAATTGTATAAATGTGATA
129 ATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATA
51264254 AGTCCCGAAG
Statistics
Matches: 171, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
187 27 0.16
189 144 0.84
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (187 bp):
TAATGACCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATAT
GTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAGGCC
Found at i:51264430 original size:37 final size:37
Alignment explanation
Indices: 51264374--51264449 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
51264364 CCGAGCTCTA
* * * *
51264374 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGTGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51264411 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51264448 AA
1 AA
51264450 TACTTCGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51265738 original size:40 final size:40
Alignment explanation
Indices: 51265662--51266043 Score: 515
Period size: 40 Copynumber: 9.7 Consensus size: 40
51265652 GAGAATTGAG
51265662 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
51265701 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
51265741 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
51265780 AGTGATATAT-CGGGCTAAGTGCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
51265819 AGTGATATATCCGGGCTAAGTCCCGAGGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
51265859 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
51265899 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
51265939 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
51265979 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
51266019 GGTGTTATATCC-GGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
51266044 AGAGTAATCA
Statistics
Matches: 305, Mismatches: 31, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
38 10 0.03
39 84 0.28
40 210 0.69
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:51269541 original size:47 final size:47
Alignment explanation
Indices: 51269445--51270373 Score: 1615
Period size: 47 Copynumber: 19.8 Consensus size: 47
51269435 GTATGGTAAT
* *
51269445 GATGTGATGAATATGAAAGTGCATATA----ATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
51269488 GATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269535 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269582 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
51269631 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269678 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269725 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
51269774 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269821 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269868 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269915 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51269962 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51270009 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51270056 GATGTGATGAA--TGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51270101 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51270148 GATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
51270194 GATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
51270242 GATGTGATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCC
* * * *
51270291 GATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCGAGGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA-ATGGCC
* * * *
51270338 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51270374 TCCCGAAGGG
Statistics
Matches: 858, Mismatches: 11, Indels: 29
0.96 0.01 0.03
Matches are distributed among these distances:
43 26 0.03
45 45 0.05
46 42 0.05
47 557 0.65
48 57 0.07
49 131 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:51269653 original size:143 final size:141
Alignment explanation
Indices: 51269445--51270373 Score: 1615
Period size: 143 Copynumber: 6.6 Consensus size: 141
51269435 GTATGGTAAT
* * *
51269445 GATGTGATGAATATGAAAGTGCATATA----ATAAGGCCTAATGGCCGATGTGATGAATATGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51269506 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51269571 GCCTAATGGCC
131 GCCTAATGGCC
51269582 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51269647 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
64 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
51269712 AGGCCTAATGGCC
129 AGGCCTAATGGCC
51269725 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51269790 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
64 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
51269855 AGGCCTAATGGCC
129 AGGCCTAATGGCC
51269868 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51269933 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51269998 GCCTAATGGCC
131 GCCTAATGGCC
51270009 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--TGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51270072 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51270137 GCCTAATGGCC
131 GCCTAATGGCC
51270148 GATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51270212 GTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATATGTGA
66 GTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT--ATATGTGA
51270276 TAAGGCCTAATGGCC
127 TAAGGCCTAATGGCC
* * * * * * *
51270291 GATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCGAGGTGGCCAACGTGATGGATGTGAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA-ATGGCCGATGTGATGAATGTGAA
*
51270355 AGTGTATAAATGTGATAAG
65 AGTGTATATATGTGATAAG
51270374 TCCCGAAGGG
Statistics
Matches: 767, Mismatches: 10, Indels: 24
0.96 0.01 0.03
Matches are distributed among these distances:
137 20 0.03
138 24 0.03
139 119 0.16
140 8 0.01
141 215 0.28
142 23 0.03
143 335 0.44
144 23 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCC
Found at i:51270540 original size:37 final size:38
Alignment explanation
Indices: 51270484--51270563 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 38
51270474 CCGAGCTCTA
* * *
51270484 AAGACCCGATGACTACGTGTGGGGATTTTGTCC-GGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
*
51270521 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
51270559 AAGAC
1 AAGAC
51270564 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 29 0.76
38 9 0.24
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
Found at i:51271944 original size:27 final size:27
Alignment explanation
Indices: 51271807--51271946 Score: 102
Period size: 27 Copynumber: 5.1 Consensus size: 27
51271797 GAATACTTTA
**
51271807 GTTTACAAAATTACCGAAATACCCTCA
1 GTTTACAAAATTACCGAAATACCCTTG
* ** * * *
51271834 ATTTGTAAAATTTCCAAAATACCCCTG
1 GTTTACAAAATTACCGAAATACCCTTG
* **
51271861 ATTTACAAAATTACAAAAATACCCTTG
1 GTTTACAAAATTACCGAAATACCCTTG
* ** *
51271888 ACTTT-CTAAAAATTATAGAAATACCATTG
1 -GTTTAC--AAAATTACCGAAATACCCTTG
*
51271917 GTTTACAAAATTACTGAAATACCCTTG
1 GTTTACAAAATTACCGAAATACCCTTG
51271944 GTT
1 GTT
51271947 GTAGATTTAC
Statistics
Matches: 88, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
27 63 0.72
28 6 0.07
29 19 0.22
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTACAAAATTACCGAAATACCCTTG
Found at i:51272030 original size:27 final size:27
Alignment explanation
Indices: 51271987--51272060 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
51271977 AAATGACTAA
*
51271987 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
51272014 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
51272041 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
51272061 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:51272064 original size:27 final size:27
Alignment explanation
Indices: 51272000--51272064 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
51271990 ACCCCTAATA
*
51272000 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
51272027 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
51272054 GGTAAAATGAC
1 GGTAAAATGAC
51272065 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:51272900 original size:24 final size:25
Alignment explanation
Indices: 51272869--51272962 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
51272859 AGGAAGTGCT
*
51272869 AAAAGGGCTATG-CCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
51272893 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51272918 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51272943 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51272963 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 11 0.18
25 51 0.82
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51273169 original size:42 final size:42
Alignment explanation
Indices: 51273110--51273201 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
51273100 TAGTCTCCCC
* *
51273110 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTCCATACATTCATTGATATTTCATGTGATATTG
*
51273152 AAATGGGCTTCCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTCCATACATTCATTGATATTTCATGTGATATTG
51273194 AAATGGGC
1 AAATGGGC
51273202 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTCCATACATTCATTGATATTTCATGTGATATTG
Found at i:51273263 original size:31 final size:31
Alignment explanation
Indices: 51273225--51273303 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
51273215 CGTTTACAAT
51273225 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
51273256 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
51273287 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCAGCCCAGT
51273304 AACTGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:51274419 original size:46 final size:47
Alignment explanation
Indices: 51274300--51274428 Score: 224
Period size: 47 Copynumber: 2.8 Consensus size: 47
51274290 GGTTGAGCAT
*
51274300 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
51274347 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC-GC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
* *
51274393 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51274429 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 35 0.44
47 44 0.56
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
Found at i:51281380 original size:46 final size:46
Alignment explanation
Indices: 51281330--51281505 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
51281320 TGGTTGAGCA
51281330 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51281376 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51281421 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51281469 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51281506 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51281486 original size:93 final size:93
Alignment explanation
Indices: 51281327--51281498 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51281317 GGATGGTTGA
* *
51281327 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51281392 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51281420 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51281485 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51281499 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51293351 original size:20 final size:18
Alignment explanation
Indices: 51293309--51293351 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
51293299 AGACTATTTT
51293309 TATGGGCCAATGTATTGA
1 TATGGGCCAATGTATTGA
* *
51293327 AATGGGCCCAACTGTGTTGA
1 TATGGG-CCAA-TGTATTGA
51293347 TATGG
1 TATGG
51293352 TTAAAGCCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 5 0.25
19 4 0.20
20 11 0.55
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (18 bp):
TATGGGCCAATGTATTGA
Found at i:51298682 original size:39 final size:39
Alignment explanation
Indices: 51298570--51298696 Score: 168
Period size: 38 Copynumber: 3.3 Consensus size: 39
51298560 AAGTGACCAT
* *
51298570 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTTA
1 ATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* * *
51298610 ATCCGAGCTAAGCCCGAA-GCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
*
51298648 ATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-A
51298688 A-CCGGGCTA
1 ATCCGGGCTA
51298697 TTGTCCCCAA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
38 33 0.44
39 30 0.40
40 12 0.16
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:51306339 original size:47 final size:47
Alignment explanation
Indices: 51306223--51306698 Score: 589
Period size: 47 Copynumber: 10.1 Consensus size: 47
51306213 TGAATGATAG
*
51306223 TAAGGCCTAATGGCCGA--TGATGAATGTGAAAGTGTATATATG-GA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51306267 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
51306314 TAAAGCCTAATAGCTGAATGT-ATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCG-ATGTGATGAATGTGAAAGTGTATATATGTGA
*
51306361 TAAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51306408 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51306455 TAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGA--TGTG-A--TG--A----ATGTGAAAGTGTATATATGTGA
51306513 TAAGGCCTAATAGCCGATGTGATGAA-GTGAAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTG-AAAGTGTATATATGTGA
*
51306560 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51306607 TAAGG-CT-ATATGCCGAT-TG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATA-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
51306651 -CAGGGCGAGT-GCCAACGTGATG-ATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51306695 TAAG
1 TAAG
51306699 TCCGAAGGGC
Statistics
Matches: 389, Mismatches: 19, Indels: 47
0.85 0.04 0.10
Matches are distributed among these distances:
43 7 0.02
44 65 0.17
45 9 0.02
46 39 0.10
47 208 0.53
48 7 0.02
49 4 0.01
50 1 0.00
51 1 0.00
52 2 0.01
53 2 0.01
54 1 0.00
55 1 0.00
56 4 0.01
58 38 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51306496 original size:12 final size:12
Alignment explanation
Indices: 51306479--51306504 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51306469 CGATGTGTGA
51306479 ATGTGAAAGTGT
1 ATGTGAAAGTGT
51306491 ATGTGAAAGTGT
1 ATGTGAAAGTGT
51306503 AT
1 AT
51306505 ATATGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (12 bp):
ATGTGAAAGTGT
Found at i:51306502 original size:58 final size:58
Alignment explanation
Indices: 51306433--51306598 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
51306423 GATGTGATGA
51306433 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGT
*
51306491 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA--TGTG-A--TG-AAGTG-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGT
51306542 A----AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGT
51306597 AT
1 AT
51306599 ATATGTGATA
Statistics
Matches: 97, Mismatches: 2, Indels: 20
0.82 0.02 0.17
Matches are distributed among these distances:
47 33 0.34
49 2 0.02
50 2 0.02
51 2 0.02
52 5 0.05
53 4 0.04
54 5 0.05
55 2 0.02
56 4 0.04
58 38 0.39
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (58 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGT
Found at i:51306509 original size:105 final size:106
Alignment explanation
Indices: 51306386--51306598 Score: 403
Period size: 105 Copynumber: 2.0 Consensus size: 106
51306376 GATGTGATGA
51306386 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA-GTGAAAAGTGTATATA
51306450 TGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGT
65 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
51306491 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
51306556 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
51306597 AT
1 AT
51306599 ATATGTGATA
Statistics
Matches: 106, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
104 3 0.03
105 86 0.81
106 17 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (106 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:51306526 original size:152 final size:150
Alignment explanation
Indices: 51306339--51306642 Score: 531
Period size: 152 Copynumber: 2.0 Consensus size: 150
51306329 GAATGTATGA
*
51306339 ATGTGAAAGTGTATATGTGTGATAAAGCCTAATAGCCGATGTGATGAATGTG-AAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAA-GTGAAAAGTGTATATA
51306403 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA-ATG
65 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTATAT-
51306467 GCCGATGTGTGAATGTGAAAGTGT
128 GCCGAT-TGTGAATGTGAAAGTGT
*
51306491 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
*
51306556 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTATATGCC
66 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTATATGCC
51306621 GATTGTGAATGTGAAAGTGT
131 GATTGTGAATGTGAAAGTGT
51306641 AT
1 AT
51306643 ATATGTGACA
Statistics
Matches: 147, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
150 19 0.13
151 12 0.08
152 116 0.79
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (150 bp):
ATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAAGTGAAAAGTGTATATAT
GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTATATGCC
GATTGTGAATGTGAAAGTGT
Found at i:51306870 original size:36 final size:36
Alignment explanation
Indices: 51306815--51306891 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
51306805 CCGAGCTCTA
* *
51306815 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGT
* *
51306851 AAGACCCGATAACTTCGTGTGGAGATTATGTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
51306887 AAGAC
1 AAGAC
51306892 TTTAATAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
Found at i:51310353 original size:38 final size:39
Alignment explanation
Indices: 51310291--51310400 Score: 143
Period size: 38 Copynumber: 2.8 Consensus size: 39
51310281 CATATCCGGA
*
51310291 CTAAGATCCGAA-GCATTTGTTGCGAGTTACTAATTCCGAG
1 CTAAG-TCCGAAGGCA-TTGTTGCGAGTTACTAAATCCGAG
* *
51310331 CTAAG-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAGTCCGAAGGCATTGTTGCGAGTTACTAAATCCGAG
*
51310369 TTAAGTCCGCAAGGCATTGTTGCGAGTTACTA
1 CTAAGTCCG-AAGGCATTGTTGCGAGTTACTA
51310401 TAACCGGTGA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 30 0.48
39 6 0.10
40 26 0.42
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTGTTGCGAGTTACTAAATCCGAG
Found at i:51316943 original size:30 final size:30
Alignment explanation
Indices: 51316909--51316968 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
51316899 ATTTAATACG
51316909 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
51316939 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
51316969 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:51317028 original size:14 final size:15
Alignment explanation
Indices: 51317002--51317031 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51316992 CTTATTCTTA
51317002 TGTTTTATAACATGC
1 TGTTTTATAACATGC
51317017 TGTTTT-TAACATGC
1 TGTTTTATAACATGC
51317031 T
1 T
51317032 ATGGCAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.50
Consensus pattern (15 bp):
TGTTTTATAACATGC
Found at i:51318978 original size:20 final size:19
Alignment explanation
Indices: 51318941--51318984 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
51318931 CTGTTTTGTT
*
51318941 ATGGGCCAATTGTATTGAA
1 ATGGGCCAACTGTATTGAA
* *
51318960 ATGGGCCCAACTGTGTTGAT
1 ATGGG-CCAACTGTATTGAA
51318980 ATGGG
1 ATGGG
51318985 TTAGAGACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (19 bp):
ATGGGCCAACTGTATTGAA
Found at i:51320232 original size:28 final size:27
Alignment explanation
Indices: 51320214--51320339 Score: 180
Period size: 28 Copynumber: 4.5 Consensus size: 27
51320204 ATTAAAGTGT
* *
51320214 TTAATGTGTCTTAGTTTAACACATGTTA
1 TTAATGTGTCTTAGTTTAATACA-ATTA
51320242 TTAATGTGTCTTAGTTTAATACAAGTTA
1 TTAATGTGTCTTAGTTTAATACAA-TTA
*
51320270 TTAATGTTTCTTAGTTTAATACATATTA
1 TTAATGTGTCTTAGTTTAATACA-ATTA
*
51320298 TTAATGTGTCTTAGTTTAATACATATTT
1 TTAATGTGTCTTAGTTTAATACA-ATTA
51320326 TTAATGTGTCTTAG
1 TTAATGTGTCTTAG
51320340 CTGCTGCCGA
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
28 90 0.99
29 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (27 bp):
TTAATGTGTCTTAGTTTAATACAATTA
Found at i:51320287 original size:56 final size:56
Alignment explanation
Indices: 51320214--51320339 Score: 200
Period size: 56 Copynumber: 2.2 Consensus size: 56
51320204 ATTAAAGTGT
*
51320214 TTAATGTGTCTTAGTTTAACACATGTTATTAATGTGTCTTAGTTTAATACA-AGTTA
1 TTAATGTGTCTTAGTTTAACACATATTATTAATGTGTCTTAGTTTAATACATA-TTA
* * *
51320270 TTAATGTTTCTTAGTTTAATACATATTATTAATGTGTCTTAGTTTAATACATATTT
1 TTAATGTGTCTTAGTTTAACACATATTATTAATGTGTCTTAGTTTAATACATATTA
51320326 TTAATGTGTCTTAG
1 TTAATGTGTCTTAG
51320340 CTGCTGCCGA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 63 0.98
57 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (56 bp):
TTAATGTGTCTTAGTTTAACACATATTATTAATGTGTCTTAGTTTAATACATATTA
Found at i:51329485 original size:47 final size:47
Alignment explanation
Indices: 51329431--51330264 Score: 1344
Period size: 47 Copynumber: 17.6 Consensus size: 47
51329421 TATTTGAATA
* *
51329431 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51329478 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51329527 AATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51329574 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51329621 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51329668 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
51329717 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51329764 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51329811 AATGTGAAAGTCTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51329860 AATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51329907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51329954 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51330003 AATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51330050 AATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51330097 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51330144 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
51330191 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51330238 GATGTGAAAGTGGATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51330265 TCCCGAAGGG
Statistics
Matches: 736, Mismatches: 43, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 560 0.76
49 176 0.24
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51329689 original size:143 final size:143
Alignment explanation
Indices: 51329431--51330264 Score: 1401
Period size: 143 Copynumber: 5.9 Consensus size: 143
51329421 TATTTGAATA
*
51329431 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
* * *
51329496 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG--TATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* *
51329559 ATAGCCAATGTGATG
129 ATGGCCGATGTGATG
*
51329574 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
51329639 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGTCTAAT
66 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
51329704 GGCCGATGTGATG
131 GGCCGATGTGATG
*
51329717 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
51329782 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTCTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
51329847 GGCCGATGTGATG
131 GGCCGATGTGATG
*
51329860 AATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
51329925 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
51329990 GGCCGATGTGATG
131 GGCCGATGTGATG
*
51330003 AATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
51330068 TGTGATAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
51330131 GGCCGATGTGATG
131 GGCCGATGTGATG
*
51330144 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
51330209 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGGATA-A-ATGTGATAAG
66 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51330265 TCCCGAAGGG
Statistics
Matches: 659, Mismatches: 28, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
141 184 0.28
142 1 0.00
143 474 0.72
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:51329762 original size:190 final size:189
Alignment explanation
Indices: 51329431--51330264 Score: 1361
Period size: 190 Copynumber: 4.4 Consensus size: 189
51329421 TATTTGAATA
51329431 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG-ATATA
* *
51329496 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
51329561 AGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
130 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51329621 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG-ATATA
* *
51329686 TATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
51329751 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
130 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
51329811 AATGTGAAAGTCTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG-TAT
1 AATGTGAAAG--TGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGATAT
51329875 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
51329940 TAGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 TAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51330003 AATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGATATAT
* *
51330067 ATGTGATAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
51330132 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
51330191 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGGATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGT-GATATA
51330255 -ATGTGATAAG
65 TATGTGATAAG
51330265 TCCCGAAGGG
Statistics
Matches: 606, Mismatches: 32, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
188 94 0.16
189 2 0.00
190 422 0.70
192 88 0.15
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (189 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51330484 original size:37 final size:37
Alignment explanation
Indices: 51330383--51330484 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
51330373 CCGAGCTCTA
*
51330383 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
51330420 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
51330457 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
51330485 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:51333444 original size:43 final size:44
Alignment explanation
Indices: 51333396--51333554 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 44
51333386 AGCTAGTACA
*
51333396 ATGCCAACGTCCCAGACATGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
** * * * * * *
51333439 ATGCCATTGTCCCATATAGGGTTTTACA-GGAAATCAAATA-CA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * *
51333481 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AATATCG
* *
51333525 ATGCCAACGTCCCAGGCGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
51333555 AAAACACATA
Statistics
Matches: 91, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 27 0.30
43 35 0.38
44 29 0.32
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:51335898 original size:93 final size:93
Alignment explanation
Indices: 51335739--51335909 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
51335729 GGATGGTTGA
* *
51335739 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
51335804 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51335832 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
51335897 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51335910 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51335912 original size:46 final size:46
Alignment explanation
Indices: 51335743--51335914 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
51335733 GGTTGAGCAT
* * *
51335743 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
51335789 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
51335834 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
51335882 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51335915 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 60 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:51343658 original size:42 final size:43
Alignment explanation
Indices: 51343599--51343721 Score: 149
Period size: 44 Copynumber: 2.9 Consensus size: 43
51343589 GGAAAGCTCG
* *
51343599 TACAATACCAACGTCCCAGACGTGGTCTTACATGAAATCA-AA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCATAA
* * * *
51343641 TACAATGCCGATGTCCCAGACATAGTCTTACACGTAAATCATAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCATAA
* * *
51343685 TTCGATGCCAACGTCCCAAACGTGGTCTTACACGAAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACACGAAA
51343722 ACACATCGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 28 0.42
43 9 0.14
44 29 0.44
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
TACAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCATAA
Found at i:51345437 original size:25 final size:24
Alignment explanation
Indices: 51345379--51345437 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
51345369 CAATCAAACA
*
51345379 AATTTAAGAAATTATAATTTTTTT
1 AATTTAAGAAATTACAATTTTTTT
* *
51345403 TATTAAAAGAAATTACAATTTTTTT
1 AATT-TAAGAAATTACAATTTTTTT
51345428 AATTTCAAGA
1 AATTT-AAGA
51345438 GAGTTTAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (24 bp):
AATTTAAGAAATTACAATTTTTTT
Found at i:51348523 original size:19 final size:18
Alignment explanation
Indices: 51348478--51348524 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
51348468 AACTCAAATA
*
51348478 TATTTTGTTTTGTTTTTT
1 TATTTTATTTTGTTTTTT
*
51348496 TTTTGTTATTTTGGTTTTTT
1 TATT-TTATTTT-GTTTTTT
51348516 TATTTTATT
1 TATTTTATT
51348525 CACTACTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 3 0.12
19 11 0.46
20 10 0.42
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.81
Consensus pattern (18 bp):
TATTTTATTTTGTTTTTT
Found at i:51350204 original size:20 final size:19
Alignment explanation
Indices: 51350179--51350226 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
51350169 TGGTAATCAG
51350179 ATTAAAAAATA-AAAATGTA
1 ATTAAAAAATAGAAAA-GTA
*
51350198 TATTAAAATATAGAAAAGTA
1 -ATTAAAAAATAGAAAAGTA
51350218 A-TAAAAAAT
1 ATTAAAAAAT
51350227 TCTACCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 1 0.04
20 13 0.52
21 4 0.16
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
ATTAAAAAATAGAAAAGTA
Found at i:51355954 original size:43 final size:43
Alignment explanation
Indices: 51355857--51355970 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
51355847 ACAGAGATGT
* * *
51355857 GATTACATGTAAGTCCATGTCAGGGACATTGGCATTGTATTGT
1 GATTACATGTAAGTCCATGTCTGGGACATTGGCATAGTATTGC
51355900 GATTACATGTAAGTCCATGTCTGGGACATTGGCATAGTTATT-C
1 GATTACATGTAAGTCCATGTCTGGGACATTGGCATAG-TATTGC
* * * * *
51355943 GATTTCGTGTAAGACCCTATCTGGGACA
1 GATTACATGTAAGTCCATGTCTGGGACA
51355971 GTGCCATCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 58 0.94
44 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
GATTACATGTAAGTCCATGTCTGGGACATTGGCATAGTATTGC
Found at i:51361290 original size:33 final size:33
Alignment explanation
Indices: 51361252--51361317 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
51361242 AGCGGCTAGA
51361252 GGATTTACCTAGGATGTATTTTTGCTGCTATGG
1 GGATTTACCTAGGATGTATTTTTGCTGCTATGG
* * * *
51361285 GGATTTACTTAGGGTTTGTTTTTGCTGCTATGG
1 GGATTTACCTAGGATGTATTTTTGCTGCTATGG
51361318 AGAATAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.15, C:0.11, G:0.29, T:0.45
Consensus pattern (33 bp):
GGATTTACCTAGGATGTATTTTTGCTGCTATGG
Found at i:51362315 original size:18 final size:18
Alignment explanation
Indices: 51362276--51362317 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
51362266 TTCATCAATA
*
51362276 TTATTTGTTATTTTTGTC
1 TTATTTGTTATTTTTATC
*
51362294 TTATTTGTT-TTATTTATT
1 TTATTTGTTATT-TTTATC
51362312 TTATTT
1 TTATTT
51362318 TCTGTTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.76
Consensus pattern (18 bp):
TTATTTGTTATTTTTATC
Found at i:51364818 original size:40 final size:40
Alignment explanation
Indices: 51364744--51365035 Score: 376
Period size: 40 Copynumber: 7.3 Consensus size: 40
51364734 ACCCAAGTAT
*
51364744 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51364783 CTTCGGGTCTTAGCCCGAATATAGCAACTCACACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
51364823 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * * *
51364863 TTTCGAGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
51364903 CTTCGGGACATAGCCCGGATATAGCAACTCGGACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
51364943 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
51364983 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
51365023 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
51365036 TTCGGTTATC
Statistics
Matches: 215, Mismatches: 32, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
38 1 0.00
39 15 0.07
40 195 0.91
41 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51364876 original size:80 final size:80
Alignment explanation
Indices: 51364744--51365035 Score: 437
Period size: 80 Copynumber: 3.7 Consensus size: 80
51364734 ACCCAAGTAT
** * * *
51364744 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAATAT-AG
1 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
51364807 CAACTCA-CACAAATGC
66 C-ACT-AGCATAAATGC
* * * *
51364823 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCTTTCGAGTCTTAGCCCGGATATAAT
1 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
51364888 CACTAGCATAAATGC
66 CACTAGCATAAATGC
*
51364903 CTTCGGGACATAGCCCGGATATAGCAACTCGGACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
51364968 CACTAGCATAAATGC
66 CACTAGCATAAATGC
*
51364983 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAG
1 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAG
51365036 TTCGGTTATC
Statistics
Matches: 195, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
79 12 0.06
80 181 0.93
81 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:51372858 original size:40 final size:40
Alignment explanation
Indices: 51372791--51372962 Score: 190
Period size: 40 Copynumber: 4.3 Consensus size: 40
51372781 ACCCAAGTAT
* *
51372791 CTTCGGGAT-TTAG-CCGGATATAACAACTCACACAAATAC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCACACAAATGC
**
51372830 CTTCGGGTCTTAGCCCGGATATAGCAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* *
51372870 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCA-CACAAATGC
* * * *
51372910 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
*
51372950 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
51372963 TCGGTTATCA
Statistics
Matches: 110, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 94 0.85
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
Found at i:51372924 original size:80 final size:79
Alignment explanation
Indices: 51372791--51372962 Score: 224
Period size: 80 Copynumber: 2.2 Consensus size: 79
51372781 ACCCAAGTAT
* *
51372791 CTTCGGGAT-TTAGCCGGATATAACAACTCACACAAATACCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTCACACAAATACCTTCGGGACATAGCCCGGATATAGC
*
51372855 AACTCGTACAAATGC
65 AACTCGCACAAATGC
* *
51372870 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCATAAATGCCTTCGGGACATAGCCCGGATATA
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTCA-CACAAATACCTTCGGGACATAGCCCGGATATA
*
51372933 GCAACTCGCACGAATGC
63 GCAACTCGCACAAATGC
*
51372950 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
51372963 TCGGTTATCA
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 12 0.15
80 68 0.83
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTCACACAAATACCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:51380097 original size:12 final size:13
Alignment explanation
Indices: 51380068--51380100 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
51380058 AATTTTGACT
51380068 AAAATAGAAAATAG
1 AAAA-AGAAAATAG
51380082 AAAAAGAAAA-AG
1 AAAAAGAAAATAG
51380094 AAAAAGA
1 AAAAAGA
51380101 TATCACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
13 6 0.32
14 4 0.21
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (13 bp):
AAAAAGAAAATAG
Found at i:51381054 original size:47 final size:46
Alignment explanation
Indices: 51380938--51381256 Score: 181
Period size: 47 Copynumber: 6.8 Consensus size: 46
51380928 TTGGGTGATT
*
51380938 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGACATCCAGA
1 TGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCAT--AGA
* * * *
51380986 CGAGGGCTAGTGTAAGACATGTCTGGGACAT-GCTTCAGCCATATTG-
1 TGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCATA--GA
* * * *
51381032 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCACAGAGA
1 TGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGC-CATAGA
* * * *
51381080 TGAGTGCCAGAGTAAGACATGTCTGGGACAT-GCATCGGCC-TCGACAA
1 TGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCAT--A-GA
* * * * * * * *
51381127 AGACAGCCCA-TGTAAGACGTGTTTGGAACA-CGCATC-GGCTTAGA
1 TGAGAG-CCAGTGTAAGACATGTCTGGGACATGGCATCAGCCATAGA
* * * * *
51381171 -GTTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCACACACA
1 TG-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGC-CATAGA
*
51381217 TGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
1 --TGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
51381257 GGCAACATAT
Statistics
Matches: 206, Mismatches: 42, Indels: 44
0.71 0.14 0.15
Matches are distributed among these distances:
43 3 0.01
44 24 0.12
45 4 0.02
46 30 0.15
47 73 0.35
48 50 0.24
49 17 0.08
50 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
TGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCATAGA
Found at i:51381099 original size:94 final size:94
Alignment explanation
Indices: 51380938--51381260 Score: 311
Period size: 94 Copynumber: 3.4 Consensus size: 94
51380928 TTGGGTGATT
* * * * *
51380938 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGACATC-CAGACGAGGGCTAGTGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCTAGTGTAAG
* *
51381002 ACATGTCTGGGACATGCTTCAGCCATATTG
65 ACATGTCTGGGACATGCATCAGCCATAATG
* * * *
51381032 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCACAGAGATGAGTGCCAGAGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGA
* *
51381097 CATGTCTGGGACATGCATCGGCC-TCGACA-A
66 CATGTCTGGGACATGCATCAGCCAT--A-ATG
* * * * * * ** *
51381127 AGACAGCCCA-TGTAAGA-CGTGTTTGGAACA-CGCATCGGCTTAGAG-T-TGTGCTAGTGTAAG
1 TGAGAG-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAG
*
51381187 ACATGTCTGGGACATGCATCAGCACACACATG
65 ACATGTCTGGGACATGCATCAGC-CATA-ATG
*
51381219 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
51381261 ACATATCCCA
Statistics
Matches: 183, Mismatches: 35, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
91 39 0.21
92 13 0.07
93 22 0.12
94 94 0.51
95 12 0.07
96 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (94 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGA
CATGTCTGGGACATGCATCAGCCATAATG
Found at i:51388595 original size:24 final size:24
Alignment explanation
Indices: 51388518--51388603 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
51388508 AAGAAATTTC
* *
51388518 AGCACTATGTGTGCGAGGTTAT-G
1 AGCACTATGTGTGCGAGATTATAT
* * * *
51388541 CGACACTATGTGTGCAAAAACTATAT
1 AG-CACTATGTGTGC-GAGATTATAT
*
51388567 GGCACTATGTGTGCGAGATTATAT
1 AGCACTATGTGTGCGAGATTATAT
51388591 AGCACTATGTGTG
1 AGCACTATGTGTG
51388604 TGAGGAAACA
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
23 1 0.02
24 31 0.63
25 16 0.33
26 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTATAT
Found at i:51392596 original size:19 final size:20
Alignment explanation
Indices: 51392572--51392609 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51392562 GGTACCACCA
51392572 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
51392591 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
51392610 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:51392951 original size:46 final size:46
Alignment explanation
Indices: 51392834--51392956 Score: 201
Period size: 46 Copynumber: 2.7 Consensus size: 46
51392824 AACCAGCCCC
* * * *
51392834 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
51392880 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51392926 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
51392957 AGATGCTCAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:51392978 original size:46 final size:45
Alignment explanation
Indices: 51392834--51392970 Score: 141
Period size: 46 Copynumber: 3.0 Consensus size: 45
51392824 AACCAGCCCC
* * * * * * *
51392834 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC-GACATGCGCAACCA
* *
51392880 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC-GACATGCGCAACCA
* * *
51392926 TAAGTGAACTCGGACTCAACTCAACGAGTTC-AGATGCTCAACCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGACATGCGCAACCA
51392970 T
1 T
51392971 CCTAGTGACA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 10 0.12
46 71 0.88
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (45 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGACATGCGCAACCA
Found at i:51400351 original size:27 final size:26
Alignment explanation
Indices: 51400303--51400362 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51400293 GCGAGGCTAC
*
51400303 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
51400330 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
51400356 CAGATAT
1 CAGATAT
51400363 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:51409689 original size:43 final size:44
Alignment explanation
Indices: 51409641--51409766 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 44
51409631 GTTACTGAGA
*
51409641 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTG-TAT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAT
*
51409684 TGTGATTA-AGTGTAAGACCATTTTTGGGACATTGGCATCGTTAT
1 TGTGATTACA-TGTAAGACCATGTTTGGGACATTGGCATCGTTAT
* * * *
51409728 TCG-G-TTTCATGTAAGACCCTGTCTGGGACAATGGCATCG
1 T-GTGATTACATGTAAGACCATGTTTGGGACATTGGCATCG
51409767 ATACGTGACA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
42 1 0.01
43 64 0.89
44 6 0.08
45 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAT
Found at i:51414214 original size:15 final size:15
Alignment explanation
Indices: 51414194--51414224 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51414184 TTTGTTGAGC
51414194 TAGTGAAGGGACCAA
1 TAGTGAAGGGACCAA
51414209 TAGTGAAGGGACCAA
1 TAGTGAAGGGACCAA
51414224 T
1 T
51414225 CAGACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.32, T:0.16
Consensus pattern (15 bp):
TAGTGAAGGGACCAA
Found at i:51419309 original size:37 final size:34
Alignment explanation
Indices: 51419259--51419330 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
51419249 AGTGTGCCGT
* *
51419259 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCC-CC-TTCTTTTC
* *
51419296 TTTTTCTCTCCATCTACCTTCTCCCCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCCCTTCTTTTC
51419330 T
1 T
51419331 CCATAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 2 0.06
36 8 0.26
37 12 0.39
ACGTcount: A:0.06, C:0.39, G:0.01, T:0.54
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCCCTTCTTTTC
Found at i:51421662 original size:19 final size:18
Alignment explanation
Indices: 51421624--51421662 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51421614 AAAAATCTGA
**
51421624 TTTTTGAAAATAATTTTT
1 TTTTTGAAAATAATAATT
51421642 TTTTTGAAAATAGATAATT
1 TTTTTGAAAATA-ATAATT
51421661 TT
1 TT
51421663 CAAACCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (18 bp):
TTTTTGAAAATAATAATT
Found at i:51426961 original size:53 final size:54
Alignment explanation
Indices: 51426887--51427081 Score: 209
Period size: 53 Copynumber: 3.6 Consensus size: 54
51426877 AACTTTCCAT
* * *
51426887 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
* * * *
51426940 TGCCATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATTAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTTATCAA
* * **
51426995 TGCCATG--TTGACATGGTCTTACATGATTTCAATGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
* * * *
51427047 TGCCGTGCCTTGGCATGGTCTTACACGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
51427082 ATCTTTCCAA
Statistics
Matches: 115, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
52 17 0.15
53 60 0.52
54 23 0.20
55 15 0.13
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
Found at i:51427112 original size:47 final size:47
Alignment explanation
Indices: 51427060--51427181 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
51427050 CGTGCCTTGG
* * * *
51427060 CATGGTCTTACACGATATCCTTATCTTTCCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * *
51427107 CATGGTCTTACATGGTATTCTTGTCTTACCGAATGCCATGTTCCGAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
51427154 CATGGCCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
51427182 GTGCCAATGC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:51427319 original size:45 final size:45
Alignment explanation
Indices: 51427235--51427320 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
51427225 ATCAATGCAG
* **
51427235 ATGCCATGTCTTGACATGGTCTTACACGAGATCCTTGCCTTACCA
1 ATGCCATGTCTTGACATGGACTTACACGAGATCAATGCCTTACCA
** *
51427280 ATGCCATGTCTTGACCATGGACTTTGA-GATATCAATGCCTT
1 ATGCCATGTCTTGA-CATGGACTTACACGAGATCAATGCCTT
51427321 GTCAAGTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
45 25 0.74
46 9 0.26
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (45 bp):
ATGCCATGTCTTGACATGGACTTACACGAGATCAATGCCTTACCA
Found at i:51427881 original size:30 final size:30
Alignment explanation
Indices: 51427841--51427901 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51427831 TCACTAACTC
*
51427841 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
* **
51427871 AAACCTTTGCAGAATTATGATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
51427901 A
1 A
51427902 GGCTTAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCCT
Found at i:51440511 original size:31 final size:31
Alignment explanation
Indices: 51440467--51440544 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
51440457 TTTAACGATT
*
51440467 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
51440498 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
51440529 ACTGGG-CGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
51440545 ACTGTAAACC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 9 0.21
31 34 0.79
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:51440615 original size:42 final size:42
Alignment explanation
Indices: 51440568--51440659 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
51440558 TGGCCCATAG
* * *
51440568 GCCCATTTCAATATCACATGTAAT-GTCAATGGATGTAAGCAA
1 GCCCATTTCAATATCACATGAAATACT-AATGAATGTAAGCAA
*
51440610 GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACTAATGAATGTAAGCAA
51440652 GCCCATTT
1 GCCCATTT
51440660 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACTAATGAATGTAAGCAA
Found at i:51440847 original size:26 final size:26
Alignment explanation
Indices: 51440804--51440953 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
51440794 CCTCTTTAAT
51440804 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
51440829 AGCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
51440855 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
51440881 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51440907 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51440933 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51440954 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
25 9 0.08
26 103 0.92
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:51440877 original size:52 final size:52
Alignment explanation
Indices: 51440804--51440953 Score: 266
Period size: 52 Copynumber: 2.9 Consensus size: 52
51440794 CCTCTTTAAT
*
51440804 AACTGGGGCA-AAGCCCTTTTCGGTAAGCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
51440855 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
51440907 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
51440954 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
51 9 0.10
52 84 0.90
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:51441846 original size:27 final size:27
Alignment explanation
Indices: 51441755--51441838 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
51441745 GGGCATATTC
* *
51441755 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
51441782 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
51441809 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51441836 GTC
1 GTC
51441839 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:51441852 original size:27 final size:27
Alignment explanation
Indices: 51441755--51441855 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
51441745 GGGCATATTC
* * *
51441755 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTATAGGGGCT-TTACG
* *
51441782 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCACTTTACCCTATAGGGGCTTTACG
51441809 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
**
51441836 GTCTTTTTA-CCTAATAGGGG
1 GTCACTTTACCCT-ATAGGGG
51441856 TATTTTAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 3 0.05
27 61 0.94
28 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCCTATAGGGGCTTTACG
Found at i:51441930 original size:27 final size:27
Alignment explanation
Indices: 51441900--51442156 Score: 149
Period size: 27 Copynumber: 9.4 Consensus size: 27
51441890 GTAAATCTAC
*
51441900 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
51441927 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
51441955 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* ** *
51441983 AAA-TAAGGGGTATTTTGGTAATTTTAC
1 AAACCAA-GGGTATTTCAGTAATTTTAT
*** * * *
51442010 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
51442037 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
51442064 AAACTAGGGGTATTTTTGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
51442091 AAACCAATGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** *
51442118 AAATCGAGGGTAAAACAGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
51442145 AAATCAAGGGTA
1 AAACCAAGGGTA
51442157 AAATAGTAAT
Statistics
Matches: 182, Mismatches: 42, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 2 0.01
27 150 0.82
28 16 0.09
29 14 0.08
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:51442048 original size:54 final size:54
Alignment explanation
Indices: 51441990--51442129 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
51441980 TGTAAATAAG
51441990 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* ** *
51442044 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTTGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* * ** *
51442098 TGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
51442130 AAACAGTAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 72 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:51442128 original size:81 final size:80
Alignment explanation
Indices: 51441877--51442129 Score: 206
Period size: 81 Copynumber: 3.1 Consensus size: 80
51441867 TTTCATCCTA
* * * * * **
51441877 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAATGGTATTT
51441942 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT--AAA-T
* ** * *** *
51441960 CAAGGGTATTTCT-GTAACTTTGTAAA-TAAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGGTAAATTTACAAACT-AGGGGTATTTTAGTAATTTTACAAACCAATGGTAT
** ** *
51442023 TTCGGTAATTTCACAAAC
64 TTTAGTAATTT-TTAAAT
* *
51442041 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTTGTAATTTTACAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAATGGTATTT
51442106 TAGTAATTTTGTAAAT
66 TAGTAATTTT-TAAAT
*
51442122 CGAGGGTA
1 CAAGGGTA
51442130 AAACAGTAAT
Statistics
Matches: 129, Mismatches: 34, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
80 1 0.01
81 70 0.54
82 4 0.03
83 53 0.41
84 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAATGGTATTT
TAGTAATTTTTAAAT
Found at i:51442139 original size:54 final size:54
Alignment explanation
Indices: 51442081--51442241 Score: 171
Period size: 54 Copynumber: 3.0 Consensus size: 54
51442071 GGGTATTTTT
* * *** * *
51442081 GTAATTTTACAAACCAATGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* *
51442135 GTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC-
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* * * * * *
51442188 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAGTCGAGGGTAAAAC
1 G-TAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
51442242 GATAATTATG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.01
54 92 0.99
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.30
Consensus pattern (54 bp):
GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:51442157 original size:27 final size:27
Alignment explanation
Indices: 51442107--51442318 Score: 234
Period size: 27 Copynumber: 7.9 Consensus size: 27
51442097 ATGGTATTTT
* *
51442107 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
51442134 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
51442161 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
51442188 -GATAATTCTATAAATCGAGGGTAAAAT
1 AG-TAATTCTATAAATCGAGGGTAAAAC
* * *
51442215 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
51442242 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
* *
51442269 AGTAATTATGTAAATC-AGGGGTAAAAC
1 AGTAATTCTATAAATCGA-GGGTAAAAC
*
51442296 -GATAATTCTATAAATCGGGGGTA
1 AG-TAATTCTATAAATCGAGGGTA
51442319 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.02
27 156 0.97
28 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:51442329 original size:54 final size:54
Alignment explanation
Indices: 51442106--51442318 Score: 295
Period size: 54 Copynumber: 3.9 Consensus size: 54
51442096 AATGGTATTT
* *
51442106 TAGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAA
*
51442160 TAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
* * * * *
51442214 TGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
* * *
51442268 CAGTAATTATGTAAATC-AGGGGTAAAACGATAATTCTATAAATCGGGGGTA
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGATAATTCTATAAATCGAGGGTA
51442319 CTTTGGTAAT
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 140 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (54 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
Found at i:51442345 original size:27 final size:27
Alignment explanation
Indices: 51442324--51442413 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
51442314 GGGTACTTTG
*
51442324 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
51442351 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
51442378 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
51442405 GTAATTTTA
1 GTAATTTTA
51442414 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:51442380 original size:108 final size:108
Alignment explanation
Indices: 51442121--51442372 Score: 258
Period size: 108 Copynumber: 2.3 Consensus size: 108
51442111 ATTTTGTAAA
* * * * * *
51442121 TCGAGGGTAAAAC-AGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
1 TCGAAGGTAAAACGA-TAATTATACAAATCGAGGGTAAAACAGTAATTATATAAATCGAGGGTAA
**
51442185 AACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAG
65 AACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAG
* ** * *
51442229 TCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAACAGTAATTATGTAAATC-AGGGGTAA
1 TCGAAGGTAAAACGATAATTATACAAATCGAGGGTAAAACAGTAATTATATAAATCGA-GGGTAA
* *** *
51442293 AACGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAG
65 AACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAG
*** *
51442337 TCGAAGGTATTTC-AGTAATTTTACAAATCGAGGGTA
1 TCGAAGGTAAAACGA-TAATTATACAAATCGAGGGTA
51442373 TTTCAGTATT
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
107 2 0.02
108 116 0.97
109 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (108 bp):
TCGAAGGTAAAACGATAATTATACAAATCGAGGGTAAAACAGTAATTATATAAATCGAGGGTAAA
ACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAG
Found at i:51442427 original size:27 final size:27
Alignment explanation
Indices: 51442324--51442428 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
51442314 GGGTACTTTG
* *
51442324 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
51442351 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
51442378 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
51442405 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
51442429 CTAAACAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Done.