Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 151 of 295
Found at i:51451070 original size:29 final size:29
Alignment explanation
Indices: 51451033--51451216 Score: 242
Period size: 29 Copynumber: 6.3 Consensus size: 29
51451023 AAGTCTACAT
* *
51451033 ACATGCATATGGCCCATTAGGTCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
51451062 ATATTCATATCGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
51451091 ATATTCATACGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
51451120 ACATTCATACGGCCCATTAAGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
51451149 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * * *
51451178 ACATTCATATGACCCGTTAAGCCCAAATG
1 ACATTCATATGGCCCATTAGGCCCAAATC
51451207 ACATTCATAT
1 ACATTCATAT
51451217 ACATGCTTTC
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 137 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51457147 original size:43 final size:43
Alignment explanation
Indices: 51457079--51457165 Score: 99
Period size: 43 Copynumber: 2.0 Consensus size: 43
51457069 AAATCGTACA
**
51457079 ATGCCAACGTCCCAGACGTGATCTTACAT-GTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGATCTTAC-TCGTAAACACATATCG
*
51457122 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGATCTTACTCGTAAACACATATCG
51457165 A
1 A
51457166 AATCACAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.08
43 34 0.89
44 1 0.03
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGATCTTACTCGTAAACACATATCG
Found at i:51463260 original size:47 final size:47
Alignment explanation
Indices: 51463182--51463870 Score: 1116
Period size: 47 Copynumber: 14.6 Consensus size: 47
51463172 CCCTTCGGGA
* * * * * *
51463182 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51463229 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463276 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51463323 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51463370 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463417 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
51463464 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCTGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51463513 CTTATCACATATATATACACTTT--CA--CATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51463605 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463701 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51463748 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51463795 CTTATCACATATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51463844 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
51463871 TATTCAAATA
Statistics
Matches: 607, Mismatches: 25, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
43 13 0.02
45 29 0.05
47 415 0.68
49 150 0.25
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51466140 original size:85 final size:85
Alignment explanation
Indices: 51466011--51466189 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
51466001 TATTTTATTG
*
51466011 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51466076 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51466096 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51466161 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51466181 CCCATGCTC
1 CCCATGCTC
51466190 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:51468926 original size:43 final size:42
Alignment explanation
Indices: 51468873--51468965 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 42
51468863 CGAAAAGCTC
* * ***
51468873 ATACAATGCCAACATCCCAGACATGGTCTTACATGTAATCAA
1 ATACGATGCCAACATCCCAGACAGGGTCTTACACAAAATCAA
***
51468915 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACAAAATCAA
1 ATA-CGATGCCAACATCCCAGACAGGGTCTTACACAAAATCAA
51468958 ATACGATG
1 ATACGATG
51468966 TCGATGTCCT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 8 0.19
43 34 0.81
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACATCCCAGACAGGGTCTTACACAAAATCAA
Found at i:51468998 original size:43 final size:44
Alignment explanation
Indices: 51468887--51468999 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 44
51468877 AATGCCAACA
* *
51468887 TCCCAGACATGGTCTTACATGT-AATCAAATATCGATGCCATTG
1 TCCCAGACAGGGTCTTACACGTAAATCAAATATCGATGCCATTG
* *
51468930 TCCCAGACAGGGTCTTACAC-AAAATCAAATA-CGATGTCGA-TG
1 TCCCAGACAGGGTCTTACACGTAAATCAAATATCGATG-CCATTG
* ***
51468972 TCCTAGACATTTTCTTACACGTAAATCA
1 TCCCAGACAGGGTCTTACACGTAAATCA
51469000 TAAGTCAATG
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (44 bp):
TCCCAGACAGGGTCTTACACGTAAATCAAATATCGATGCCATTG
Found at i:51471554 original size:43 final size:41
Alignment explanation
Indices: 51471465--51471578 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 41
51471455 TGTTATTACA
* *
51471465 TGTAAGACCATTCTTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATT-TTGGGACACTGGCA-TGTATTAAGATTATG
51471508 TGTAAGACCATGTTTGGGACACTGGCAT-TATTAATCGATT-TCG
1 TGTAAGACCAT-TTTGGGACACTGGCATGTATTAA--GATTAT-G
* * *
51471551 TGTAAGACCCTATCTGGGACAGTGGCAT
1 TGTAAGACCAT-TTTGGGACACTGGCAT
51471579 CGATATGTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 5 0.08
42 2 0.03
43 53 0.87
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
TGTAAGACCATTTTGGGACACTGGCATGTATTAAGATTATG
Found at i:51478662 original size:15 final size:16
Alignment explanation
Indices: 51478642--51478671 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51478632 GCTGATATGA
51478642 AGCTAT-ATGAAATTC
1 AGCTATCATGAAATTC
51478657 AGCTATCATGAAATT
1 AGCTATCATGAAATT
51478672 AGAAAGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (16 bp):
AGCTATCATGAAATTC
Found at i:51482363 original size:14 final size:14
Alignment explanation
Indices: 51482346--51482401 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
51482336 ACGGTCGATT
51482346 ATAGGAGATATCGC
1 ATAGGAGATATCGC
*
51482360 ATAGGAGAAATCGC
1 ATAGGAGATATCGC
*
51482374 ATAGGAGATCTCGTC
1 ATAGGAGATATCG-C
51482389 A-AGGA-ATATCGC
1 ATAGGAGATATCGC
51482401 A
1 A
51482402 AATCAGGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
12 2 0.05
13 5 0.14
14 28 0.76
15 2 0.05
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (14 bp):
ATAGGAGATATCGC
Found at i:51483002 original size:20 final size:20
Alignment explanation
Indices: 51482977--51483043 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
51482967 ATTTTGATAT
51482977 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51482997 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
51483017 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51483037 ACATGAT
1 ACATGAT
51483044 GTAATCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51483004 original size:11 final size:11
Alignment explanation
Indices: 51482988--51483043 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
51482978 CATGATATGT
51482988 ATGATATGCAC
1 ATGATATGCAC
*
51482999 ATGATATGTAC
1 ATGATATGCAC
51483010 --GATATGCAC
1 ATGATATGCAC
*
51483019 ATGATATG--T
1 ATGATATGCAC
51483028 ATGATATGCAC
1 ATGATATGCAC
51483039 ATGAT
1 ATGAT
51483044 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51483163 original size:24 final size:24
Alignment explanation
Indices: 51483094--51483176 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
51483084 AGGAAATACA
* *
51483094 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
51483118 GAAAATGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
* *
51483144 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
51483167 AAAAGAGGCT
1 AAAAG-GGCT
51483177 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 9 0.18
24 13 0.26
25 14 0.28
26 14 0.28
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:51483421 original size:31 final size:34
Alignment explanation
Indices: 51483386--51483468 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 34
51483376 GTTTATAGTG
51483386 AAGGCTTCGGCCCA-AT-A-ATATGAAATATGAA
1 AAGGCTTCGGCCCATATGAGATATGAAATATGAA
51483417 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA----TATGAGATATGAAATATGAA
51483455 AAGGCTTCGGCCCA
1 AAGGCTTCGGCCCA
51483469 GTATATGCTG
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
31 14 0.31
36 2 0.04
37 1 0.02
38 28 0.62
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (34 bp):
AAGGCTTCGGCCCATATGAGATATGAAATATGAA
Found at i:51486967 original size:20 final size:21
Alignment explanation
Indices: 51486922--51486968 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
51486912 TATGCCTTTT
*
51486922 ATATTAATAAACTAAATGTTA
1 ATATGAATAAACTAAATGTTA
51486943 A-ATGAATAAA-TAATATG-TA
1 ATATGAATAAACTAA-ATGTTA
51486962 ATATGAA
1 ATATGAA
51486969 CATATATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 6 0.26
20 16 0.70
21 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (21 bp):
ATATGAATAAACTAAATGTTA
Found at i:51487636 original size:47 final size:47
Alignment explanation
Indices: 51487582--51487696 Score: 158
Period size: 47 Copynumber: 2.4 Consensus size: 47
51487572 TAAATTGACC
* * *
51487582 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
* * * *
51487629 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
*
51487676 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
51487697 TCCCGAAGGG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
Found at i:51487865 original size:37 final size:37
Alignment explanation
Indices: 51487815--51487930 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
51487805 CCGAGCTCTA
51487815 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
51487852 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
51487889 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
51487926 AAGAC
1 AAGAC
51487931 TTCGTAATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:51491214 original size:40 final size:40
Alignment explanation
Indices: 51491110--51491353 Score: 352
Period size: 40 Copynumber: 6.2 Consensus size: 40
51491100 AAACCAAGTA
* * *
51491110 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
51491149 TCTTCGAGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51491188 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51491228 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51491268 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51491308 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51491348 CCTTCG
1 CCTTCG
51491354 TTATCATCCA
Statistics
Matches: 187, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 3 0.02
39 39 0.21
40 145 0.78
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51493206 original size:8 final size:8
Alignment explanation
Indices: 51493193--51493219 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
51493183 TGAAATTTTT
51493193 ATACATGC
1 ATACATGC
51493201 ATACATGC
1 ATACATGC
51493209 ATACATGC
1 ATACATGC
51493217 ATA
1 ATA
51493220 TAATAAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (8 bp):
ATACATGC
Found at i:51496125 original size:20 final size:20
Alignment explanation
Indices: 51496100--51496146 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
51496090 ATTTTGATAT
51496100 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51496120 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51496140 ACATGAT
1 ACATGAT
51496147 TTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51496236 original size:26 final size:24
Alignment explanation
Indices: 51496197--51496266 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
51496187 AGGAAGTGCA
* *
51496197 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
* *
51496221 GAAAATGGCTTTTGCCCTAGTTTATC
1 -AAAAGGGC-TTTGCCCTAGTTTACC
51496247 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
51496267 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 12 0.31
25 14 0.36
26 13 0.33
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:51496263 original size:24 final size:24
Alignment explanation
Indices: 51496197--51496279 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
51496187 AGGAAGTGCA
* * *
51496197 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTATC
*
51496221 GAAAATGGCTTTTGCCCTAGTTTATC
1 -AAAAGGGC-TTTGCCCTAGTTTATC
*
51496247 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCTAGTTTATC
51496270 AAAAGAGGCT
1 AAAAG-GGCT
51496280 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 9 0.18
24 14 0.28
25 14 0.28
26 13 0.26
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTATC
Found at i:51496273 original size:23 final size:23
Alignment explanation
Indices: 51496197--51496293 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
51496187 AGGAAGTGCA
* * *
51496197 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAG-TTATC
*
51496221 GAAAATGGCTTTTGCCCTAGTTTATC
1 -AAAAGGGC-TTTGCCCTAG-TTATC
*
51496247 AAAAGGGCTTTGCCCTAGTTATT
1 AAAAGGGCTTTGCCCTAGTTATC
**
51496270 AAAAGAGGCTAGGCCTCTAGTTAT
1 AAAAG-GGCTTTGCC-CTAGTTAT
51496294 ATGATAAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
23 9 0.15
24 17 0.28
25 22 0.36
26 13 0.21
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCTAGTTATC
Found at i:51496524 original size:31 final size:31
Alignment explanation
Indices: 51496489--51496578 Score: 101
Period size: 38 Copynumber: 2.7 Consensus size: 31
51496479 GTTTACAGTG
*
51496489 AAGGCTTCAGCCCAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
51496520 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA--G---T-A-ATATGAAATATGAA
51496558 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
51496579 CTGAGATGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
30 5 0.10
31 13 0.25
33 2 0.04
36 2 0.04
37 1 0.02
38 28 0.55
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:51501194 original size:41 final size:40
Alignment explanation
Indices: 51501134--51501301 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
51501124 AGTCCGACTC
51501134 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTC-GAT
* ** * *
51501174 TTAGACTACTGGCTC-GAAG-CCTTCG-GAAGTAAG-TCCAG
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGAT
* * * *
51501212 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTT
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTC-GAT
51501256 ATTAGA-ACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAT
1 -TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAT
51501296 TTAGAC
1 TTAGAC
51501302 CCGATTAGCA
Statistics
Matches: 100, Mismatches: 15, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
38 12 0.12
39 11 0.11
40 16 0.16
41 27 0.27
42 19 0.19
43 10 0.10
44 2 0.02
45 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAT
Found at i:51510787 original size:13 final size:13
Alignment explanation
Indices: 51510769--51510794 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51510759 TGTTTAACAT
51510769 CATATATGCATTA
1 CATATATGCATTA
51510782 CATATATGCATTA
1 CATATATGCATTA
51510795 TCTTGCCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
CATATATGCATTA
Found at i:51517145 original size:48 final size:48
Alignment explanation
Indices: 51517081--51517228 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
51517071 TTGATGTACA
*
51517081 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
51517129 AGATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
51517177 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
51517225 AGAT
1 AGAT
51517229 GTGTATATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:51522352 original size:21 final size:21
Alignment explanation
Indices: 51522314--51522353 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51522304 AAACTTGAGA
*
51522314 AATTTTAGAATATTTTTGGTT
1 AATTTTAGAATATGTTTGGTT
51522335 AATTTTGAGAATA-GTTTGG
1 AATTTT-AGAATATGTTTGG
51522354 GGTGAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (21 bp):
AATTTTAGAATATGTTTGGTT
Found at i:51528288 original size:43 final size:43
Alignment explanation
Indices: 51528241--51528377 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
51528231 AATGGCATAC
*
51528241 CCCAAATATGGTCATACATATTATCACATATCAATGCCATTGT
1 CCCAAACATGGTCATACATATTATCACATATCAATGCCATTGT
* * ** * * * * *
51528284 CCCAAACAGGGTCTTATTTGA-AATCGA-TTAACGATGCCAATGT
1 CCCAAACATGGTCATACAT-ATTATC-ACATATCAATGCCATTGT
*
51528327 CCCAGACATGGTCATACATATTATCACATATCAATGCCACTT-T
1 CCCAAACATGGTCATACATATTATCACATATCAATGCCA-TTGT
51528370 CCCAAACA
1 CCCAAACA
51528378 GGGACTTATA
Statistics
Matches: 68, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
42 2 0.03
43 63 0.93
44 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (43 bp):
CCCAAACATGGTCATACATATTATCACATATCAATGCCATTGT
Found at i:51528393 original size:86 final size:86
Alignment explanation
Indices: 51528248--51528447 Score: 321
Period size: 86 Copynumber: 2.3 Consensus size: 86
51528238 TACCCCAAAT
* * *
51528248 ATGGTCATACATATTATCACATATCAATGCCATTGTCCCAAACAGGGTCTTATTTGAAATCGATT
1 ATGGTCATACATATTATCACATATCAATGCCATTGTCCCAAACAGGGACTTATATGAAATCAATT
51528313 AACGATGCCAATGTCCCAGAC
66 AACGATGCCAATGTCCCAGAC
51528334 ATGGTCATACATATTATCACATATCAATGCCACTT-TCCCAAACAGGGACTTATATGAAATCAAT
1 ATGGTCATACATATTATCACATATCAATGCCA-TTGTCCCAAACAGGGACTTATATGAAATCAAT
*
51528398 TAATGATGCCAATGTCCCAGAC
65 TAACGATGCCAATGTCCCAGAC
* * *
51528420 ATGGTCTTACATGTAATCACATATCAAT
1 ATGGTCATACATATTATCACATATCAAT
51528448 AACCTAATGT
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
86 104 0.98
87 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (86 bp):
ATGGTCATACATATTATCACATATCAATGCCATTGTCCCAAACAGGGACTTATATGAAATCAATT
AACGATGCCAATGTCCCAGAC
Found at i:51528438 original size:43 final size:43
Alignment explanation
Indices: 51528274--51528438 Score: 129
Period size: 43 Copynumber: 3.8 Consensus size: 43
51528264 TCACATATCA
* ** * *
51528274 ATGCCATTGTCCCAAACAGGGTCTTATTTGAAATCGATTAACG
1 ATGCCAATGTCCCAAACAGGGTCTTACATGAAATCAATTAATG
* * * * *
51528317 ATGCCAATGTCCCAGACATGGTCATACAT-ATTATCACA-T-ATCA
1 ATGCCAATGTCCCAAACAGGGTCTTACATGA-AATCA-ATTAAT-G
* * * *
51528360 ATGCCACTTTCCCAAACAGGGACTTATATGAAATCAATTAATG
1 ATGCCAATGTCCCAAACAGGGTCTTACATGAAATCAATTAATG
* * *
51528403 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAAACAGGGTCTTACATGAAATCA
51528439 CATATCAATA
Statistics
Matches: 90, Mismatches: 26, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
42 3 0.03
43 83 0.92
44 4 0.04
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACAGGGTCTTACATGAAATCAATTAATG
Found at i:51531344 original size:28 final size:28
Alignment explanation
Indices: 51531281--51531378 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
51531271 ATATTAAGTC
*
51531281 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51531308 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51531336 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51531365 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51531379 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51539661 original size:27 final size:26
Alignment explanation
Indices: 51539644--51539713 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
51539634 ATATTAAGTC
51539644 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
51539671 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
51539699 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51539714 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:51539707 original size:28 final size:28
Alignment explanation
Indices: 51539644--51539740 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
51539634 ATATTAAGTC
*
51539644 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51539671 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
51539699 CGCACACTTAGTGCTGTACAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
51539727 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51539741 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
27 22 0.34
28 37 0.58
29 5 0.08
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51547418 original size:46 final size:46
Alignment explanation
Indices: 51547360--51547537 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
51547350 TGTAACCCGC
* * *
51547360 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * * *
51547406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * **
51547452 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
51547499 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
51547538 CTCAACCATC
Statistics
Matches: 106, Mismatches: 21, Indels: 10
0.77 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:51547496 original size:93 final size:93
Alignment explanation
Indices: 51547367--51547538 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51547357 CGCCCATAAG
* *** *
51547367 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
51547432 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
51547460 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
51547525 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51547539 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:51548585 original size:31 final size:31
Alignment explanation
Indices: 51548542--51548620 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
51548532 TTTAACAGTT
*
51548542 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
51548573 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
51548604 ACTGGGCTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
51548621 ATTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATC
Found at i:51548704 original size:42 final size:42
Alignment explanation
Indices: 51548644--51548735 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
51548634 TGGCCCATAG
* *
51548644 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGGAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
51548686 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
51548728 GCCCATTT
1 GCCCATTT
51548736 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:51548910 original size:25 final size:24
Alignment explanation
Indices: 51548882--51548976 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 24
51548872 CTCTTTTAAT
*
51548882 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTT-TGGTA
51548907 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTT-GGTA
*
51548932 AACTAGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCC-TTTTGGTA
*
51548957 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
51548977 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
24 5 0.08
25 55 0.86
26 4 0.06
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTGGTA
Found at i:51548941 original size:50 final size:50
Alignment explanation
Indices: 51548882--51548976 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
51548872 CTCTTTTAAT
*
51548882 AACTGGGGCAAAGCCCTTTCTGATAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTCTGATAAACTGGGGCAAAGCCCTTTTCGGTA
* * *
51548932 AACTAGGGCAAAGCCCTTTTTGGTAAACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTCTGATAAACTGGGGCAAAGCCCTTTT
51548977 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (50 bp):
AACTAGGGCAAAGCCCTTTCTGATAAACTGGGGCAAAGCCCTTTTCGGTA
Found at i:51549809 original size:27 final size:27
Alignment explanation
Indices: 51549779--51549843 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
51549769 GGGCATATTC
51549779 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
51549806 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
51549833 GTCTTTTTACC
1 GTCATTTTACC
51549844 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:51549927 original size:27 final size:27
Alignment explanation
Indices: 51549897--51550037 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
51549887 GTAAATCTAC
51549897 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
51549924 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
51549950 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** * **
51549980 AAATCAGGGGTATTTTGGAAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** *
51550007 AAATTGAGGGTATTTCGGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
51550034 AAAC
1 AAAC
51550038 TAAAGTATTC
Statistics
Matches: 90, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 64 0.71
28 7 0.08
29 17 0.19
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:51550003 original size:56 final size:54
Alignment explanation
Indices: 51549894--51550037 Score: 148
Period size: 56 Copynumber: 2.6 Consensus size: 54
51549884 TTGGTAAATC
* *
51549894 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* ** * *
51549949 TAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTT-TGGA-AATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT--ATAATTT
** *
51550004 TACAAATTGAGGGTATTTCGGTAATTTTGTAAAC
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
51550038 TAAAGTATTC
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
54 23 0.32
55 14 0.19
56 35 0.48
57 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:51551336 original size:37 final size:37
Alignment explanation
Indices: 51551286--51551364 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51551276 TTATTACGAA
* * *
51551286 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51551323 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51551360 GTCTT
1 GTCTT
51551365 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51551556 original size:47 final size:47
Alignment explanation
Indices: 51551478--51552381 Score: 1439
Period size: 47 Copynumber: 18.9 Consensus size: 47
51551468 CCCTTCGGGA
* * * * * *
51551478 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51551525 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51551572 CTGATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51551619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551668 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551717 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551764 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551811 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551860 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51551907 GTTATCACATATAAACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51551954 GTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51552005 CCTATCACATATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51552054 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51552101 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51552148 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51552197 CTTATCACATATATACACTTTCACATTCATCACGTCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51552244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51552291 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51552338 CTTATCACATATATACACTTTCATATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
51552382 CGCCATACTA
Statistics
Matches: 807, Mismatches: 40, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 530 0.66
49 233 0.29
51 44 0.05
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51551675 original size:96 final size:94
Alignment explanation
Indices: 51551478--51552381 Score: 1439
Period size: 96 Copynumber: 9.5 Consensus size: 94
51551468 CCCTTCGGGA
* * * * * * * *
51551478 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51551543 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
51551572 CTGATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
51551637 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
51551668 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51551733 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
51551764 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
51551829 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51551860 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCGTTATCACATATAAACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51551925 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
51551954 GTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
*
51552019 ATACAATTTCACATTCATCACATCGGCCATTAGGC
60 ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51552054 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51552119 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
51552148 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
51552213 ACTTTCACATTCATCACGTCGACCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
51552244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
51552309 TTTCACATTCGTCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
51552338 CTTATCACATATATACACTTTCATATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
51552382 CGCCATACTA
Statistics
Matches: 759, Mismatches: 37, Indels: 28
0.92 0.04 0.03
Matches are distributed among these distances:
94 309 0.41
96 318 0.42
98 89 0.12
100 43 0.06
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:51551783 original size:143 final size:141
Alignment explanation
Indices: 51551478--51552381 Score: 1441
Period size: 143 Copynumber: 6.3 Consensus size: 141
51551468 CCCTTCGGGA
* * * * * * *
51551478 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
51551543 TTTCACATTCATCACATCGGCCATTAGG-CCTGATCACATATATACACTTTCACATTCATCACGT
66 TTTCACATTCATCACATCGGCCATTAGGCCCT-ATCACATATATACACTTTCACATTCATCACAT
51551607 CGGCCATTAGGC
130 CGGCCATTAGGC
51551619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATAT
51551684 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCA
51551749 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
51551764 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
51551829 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACA
*
51551894 TCGACCATTAGGC
129 TCGGCCATTAGGC
* * **
51551907 GTTATCACATATAAACACTTTCACATTCATCACATCGGCCATTAGGCGTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC----ATATAT
*
51551972 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACAATTTCACATTCAT
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCACATTCAT
51552037 CACATCGGCCATTAGGC
125 CACATCGGCCATTAGGC
* *
51552054 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
51552119 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCACATTCATCACA
51552184 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* * *
51552197 CTTATCACATATATACACTTTCACATTCATCACGTCGACCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
* *
51552262 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCGTCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATC
51552327 GGCCATTAGGC
131 GGCCATTAGGC
* *
51552338 CTTATCACATATATACACTTTCATATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
51552382 CGCCATACTA
Statistics
Matches: 721, Mismatches: 33, Indels: 18
0.93 0.04 0.02
Matches are distributed among these distances:
141 86 0.12
143 407 0.56
145 137 0.19
146 3 0.00
147 88 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:51556436 original size:31 final size:30
Alignment explanation
Indices: 51556393--51556471 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 30
51556383 TTTAACGGTT
51556393 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGC-GAAGCCTTTTCATAAATCATATC
51556424 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGG-CGAAGCCTTTTCATAAATCATATC
*
51556455 ACTGGGCCAAAGCCTTT
1 ACTGGG-CGAAGCCTTT
51556472 ATTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 44 0.98
32 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (30 bp):
ACTGGGCGAAGCCTTTTCATAAATCATATC
Found at i:51556555 original size:42 final size:42
Alignment explanation
Indices: 51556495--51556586 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
51556485 TGGCCCATAG
*
51556495 GCCCATTTCAATAACACATGAAATATAAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATATAAATGAATGTATGAAA
* *
51556537 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGAAA
1 GCCCATTTCAATAACACATGAAATATAAATGAATGTATGAAA
51556579 GCCCATTT
1 GCCCATTT
51556587 GGTGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATATAAATGAATGTATGAAA
Found at i:51556762 original size:25 final size:25
Alignment explanation
Indices: 51556734--51556803 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
51556724 CTCTTTTAAT
51556734 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
51556759 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
51556784 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
51556804 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:51557761 original size:27 final size:27
Alignment explanation
Indices: 51557731--51557871 Score: 108
Period size: 27 Copynumber: 5.1 Consensus size: 27
51557721 GTAAATCTAC
51557731 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
51557758 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
*
51557784 AGAAAGTCAAGGGTATTTCAGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* ** * **
51557814 -AACTCAGGGGTATTTTGGAAATTTTAC
1 AAAC-CAAGGGTATTTCAGTAATTTTGT
** * *
51557841 AAATTAAGGGTATTTCGGTAATTTGGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
51557868 AAAC
1 AAAC
51557872 TAAAATATTC
Statistics
Matches: 87, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
26 1 0.01
27 60 0.69
28 7 0.08
29 18 0.21
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:51557826 original size:56 final size:53
Alignment explanation
Indices: 51557728--51557869 Score: 158
Period size: 56 Copynumber: 2.6 Consensus size: 53
51557718 TTGGTAAATC
* * * *
51557728 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGT-AACCAAGGGTATTT-TAGAAATTT
* * *
51557783 TAGAAAGTCAAGGGTATTTCAGTAATTTTGTAACTCAGGGGTATTTTGGAAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAC-CAAGGGTATTTTAGAAATTT
* * *
51557838 TACAAATTAAGGGTATTTCGGTAATTTGGTAA
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAA
51557870 ACTAAAATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
54 23 0.31
55 19 0.26
56 32 0.43
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (53 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAACCAAGGGTATTTTAGAAATTT
Found at i:51564195 original size:48 final size:47
Alignment explanation
Indices: 51564119--51564498 Score: 311
Period size: 48 Copynumber: 7.9 Consensus size: 47
51564109 AGACATTTGG
* * *
51564119 TTGATATGTGTGCTAGTGTAAGAACATGTCTAGGACATGGCATCGGTA
1 TTGATATGTGTGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
51564167 TTGATATGTGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TTGATATGTGTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * * *
51564216 --CATTACGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCA
1 TTGA-TATGTGTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* *
51564263 TTGATATGTGTGCTTGTGTAAGACCATGTCTGGGACATAGCATCGGCCA
1 TTGATATGTGTGC-AGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * *
51564312 --CATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
1 TTGA-TATGTGTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
** * * * * * *
51564359 TCAATATGCGAGCATTGTAAGACCATGTTTGGAACATGGCATCGACA
1 TTGATATGTGTGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * *
51564406 TTGTTATATGTGT-CAATGTAAGACCATGTCTAGGACATGGTATCGGCA
1 TTG--ATATGTGTGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
** * * * * *
51564454 CCGATGTATGAGAGCCATTGTAGGACCATGTCCGGGACATGGCAT
1 TTGA--TATGTGTG-CAGTGTAAGACCATGTCTGGGACATGGCAT
51564499 TGGAATTTTA
Statistics
Matches: 267, Mismatches: 48, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
46 1 0.00
47 37 0.14
48 191 0.72
49 13 0.05
50 25 0.09
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (47 bp):
TTGATATGTGTGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:51564297 original size:96 final size:96
Alignment explanation
Indices: 51564133--51564402 Score: 382
Period size: 96 Copynumber: 2.8 Consensus size: 96
51564123 TATGTGTGCT
* * * *
51564133 AGTGTAAGAACATGTCTAGGACATGGCATCGGTATTGATATGTGTG-TCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCT-TGTGTAAGACCATGTC
51564197 TGGGACATGGCATCGGCCACATTACGAGAGCC
65 TGGGACATGGCATCGGCCACATTACGAGAGCC
*
51564229 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTTGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTTGTGTAAGACCATGTCT
* *
51564294 GGGACATAGCATCGGCCACATTATGAGAGCC
66 GGGACATGGCATCGGCCACATTACGAGAGCC
* ** * * * *
51564325 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGAGCAT-TGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTTGTGTAAGACCATGTCT
*
51564389 GGAACATGGCATCG
66 GGGACATGGCATCG
51564403 ACATTGTTAT
Statistics
Matches: 156, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
95 26 0.17
96 129 0.83
97 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTTGTGTAAGACCATGTCT
GGGACATGGCATCGGCCACATTACGAGAGCC
Found at i:51567289 original size:48 final size:47
Alignment explanation
Indices: 51567167--51567316 Score: 147
Period size: 48 Copynumber: 3.1 Consensus size: 47
51567157 CTAGTCTATC
* * * * *
51567167 GGCATCAATATGTGATCCCATGTAGGACCATGTCTAGGACTTGCCATT
1 GGCATCGATATGTGAT-CCATGTAAGACCATGTCTGGGACATGGCATT
** ** *
51567215 GGCATCGACCTACGATCACATATAAGACCATGTCTGGGACATGGCATT
1 GGCATCGATATGTGATC-CATGTAAGACCATGTCTGGGACATGGCATT
* * * *
51567263 GGCATCGATATGTGGTCCTATGTAAGACCATATATGGGATATGGCATT
1 GGCATCGATATGTGATCC-ATGTAAGACCATGTCTGGGACATGGCATT
51567311 GGCATC
1 GGCATC
51567317 CTACCATGTG
Statistics
Matches: 81, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
47 2 0.02
48 79 0.98
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (47 bp):
GGCATCGATATGTGATCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:51579448 original size:33 final size:33
Alignment explanation
Indices: 51579411--51579481 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
51579401 TCAGTCGCAA
51579411 TATCAGTGTG-GCCTTAGCCCAAT-ACAGTATCAG
1 TATCAGTGTGAGCCTTAGCCC-ATCACAGTAT-AG
*
51579444 TATCAGTGTGAGCCTTAGCCCATCTCAGTATAG
1 TATCAGTGTGAGCCTTAGCCCATCACAGTATAG
51579477 TATCA
1 TATCA
51579482 TAAATGCATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
33 19 0.54
34 16 0.46
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (33 bp):
TATCAGTGTGAGCCTTAGCCCATCACAGTATAG
Found at i:51580847 original size:46 final size:46
Alignment explanation
Indices: 51580794--51581010 Score: 232
Period size: 46 Copynumber: 4.8 Consensus size: 46
51580784 TATTTGGGCA
*
51580794 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
** * * * *
51580840 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACAGATGTAATGAG-GCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GATGCGAACG
* *
51580887 TCCGACCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
51580933 CCCGAGCTCGTTGAGTTGAGTCTGAGTT--C---TGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
51580974 -CTCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51581011 GCGGGTTACA
Statistics
Matches: 143, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 36 0.25
43 1 0.01
44 1 0.01
45 4 0.03
46 64 0.45
47 32 0.22
48 4 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:51580949 original size:93 final size:93
Alignment explanation
Indices: 51580790--51580961 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51580780 AGGATATTTG
* *
51580790 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51580855 TTGAGTCCGAGTTCGACAGATGTAATGA
66 TTGAGTCCGAGTTCGACAGATGTAATGA
* * *
51580883 GGCATCCGACCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
51580948 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
51580962 TGGATGCGAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGACAGATGTAATGA
Found at i:51580966 original size:41 final size:42
Alignment explanation
Indices: 51580888--51581002 Score: 151
Period size: 41 Copynumber: 2.7 Consensus size: 42
51580878 AATGAGGCAT
*
51580888 CCGACCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTT--C-T-TGGATGCGAACGC
51580934 CCGAGCTCGTTGAGTTGAGTCTGAGTTC-TGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCTTGGATGCGAACGC
* * *
51580975 TCGAGCTCGTTGAGTTCAGTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTC
51581003 ACTTATGGGC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
41 38 0.58
44 1 0.02
46 26 0.40
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.29
Consensus pattern (42 bp):
CCGAGCTCGTTGAGTTGAGTCTGAGTTCTTGGATGCGAACGC
Found at i:51582506 original size:26 final size:26
Alignment explanation
Indices: 51582452--51582507 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
51582442 GCTCAAACTT
* ** *
51582452 TCATTTATCACATAGGGGTATTTTCG
1 TCATTTACCACATAGGGGTATAATAG
*
51582478 TCATTTACCTCATAGGGGTATAATAG
1 TCATTTACCACATAGGGGTATAATAG
51582504 TCAT
1 TCAT
51582508 AACATAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (26 bp):
TCATTTACCACATAGGGGTATAATAG
Found at i:51597000 original size:14 final size:15
Alignment explanation
Indices: 51596967--51597005 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
51596957 TCTCTCACTC
51596967 TTTTTT-TTTCAATT
1 TTTTTTCTTTCAATT
51596981 TCTTTTTCTTTC-ATT
1 T-TTTTTCTTTCAATT
51596996 TTTTTTCTTT
1 TTTTTTCTTT
51597006 TCTCTATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 9 0.39
16 4 0.17
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTCTTTCAATT
Found at i:51597007 original size:15 final size:17
Alignment explanation
Indices: 51596965--51597007 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
51596955 TTTCTCTCAC
51596965 TCTTTTT-TTTTCAATT
1 TCTTTTTCTTTTCAATT
51596981 TCTTTTTC-TTTC-ATT
1 TCTTTTTCTTTTCAATT
51596996 T-TTTTTCTTTTC
1 TCTTTTTCTTTTC
51597008 TCTATTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.24
15 8 0.32
16 11 0.44
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (17 bp):
TCTTTTTCTTTTCAATT
Found at i:51609990 original size:39 final size:40
Alignment explanation
Indices: 51609861--51610024 Score: 210
Period size: 40 Copynumber: 4.2 Consensus size: 40
51609851 TGGATGATAA
* *
51609861 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
51609901 CGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
51609941 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
51609980 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
51610019 CGAAGG
1 CGAAGG
51610025 TACTTGGTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 5 0.05
39 37 0.34
40 67 0.61
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:51610005 original size:79 final size:79
Alignment explanation
Indices: 51609861--51610024 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
51609851 TGGATGATAA
* * * *
51609861 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTACTAT
* *
51609926 ATCTGGGCTAAGTCC
66 ATC-CGGCTAAATCC
*
51609941 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCT-AGTCCCGAAGACATTTGAGCGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTA-CT
*
51610003 ATATCCGGTTAAATCC
64 ATATCCGGCTAAATCC
51610019 CGAAGG
1 CGAAGG
51610025 TACTTGGTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 16 0.22
79 30 0.41
80 28 0.38
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTACTAT
ATCCGGCTAAATCC
Found at i:51611841 original size:26 final size:27
Alignment explanation
Indices: 51611812--51611871 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
51611802 CCACATATAT
*
51611812 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
51611838 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
51611865 ATATCTG
1 ATATCTG
51611872 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:51612832 original size:45 final size:44
Alignment explanation
Indices: 51612744--51612862 Score: 152
Period size: 45 Copynumber: 2.6 Consensus size: 44
51612734 GCATATCTGT
51612744 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCG-AG
*
51612790 GCCGATGCATGTCCCAGAC-TGTCTTACACTGACTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAG
* *
51612835 GCCAATGCATGTTCCAGACATGTCTTAC
1 GCCGATGCATGTCCCAGACATGTCTTAC
51612863 TCTAGCACTT
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
43 13 0.20
44 2 0.03
45 36 0.55
46 15 0.23
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGAG
Found at i:51612877 original size:46 final size:45
Alignment explanation
Indices: 51612752--51612908 Score: 151
Period size: 45 Copynumber: 3.4 Consensus size: 45
51612742 GTGCCGATGC
** * *
51612752 CATGTCCCAGACATGGTCTTACACTGACACA-TCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTAGTCTC-AAGGCCAATG
*
51612797 CATGTCCCAGAC-TGTCTTACACTGACTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGACTTA-GTCTCAAGGCCAATG
* * *
51612842 CATGTTCCAGACATGTCTTACTCTAGCACTT-GTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACT-G-ACTTAGTCTCAAGGCCAATG
51612888 CTATGTCCCAGACATGGTCTT
1 C-ATGTCCCAGACAT-GTCTT
51612909 CAATGTAGCC
Statistics
Matches: 95, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
43 14 0.15
44 2 0.02
45 33 0.35
46 24 0.25
47 13 0.14
48 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTTAGTCTCAAGGCCAATG
Found at i:51618177 original size:30 final size:30
Alignment explanation
Indices: 51618141--51618201 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
51618131 TTCCCGAGCC
51618141 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
51618171 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
51618201 T
1 T
51618202 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:51620472 original size:40 final size:40
Alignment explanation
Indices: 51620418--51620609 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
51620408 GAATTTAACT
* *
51620418 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
51620458 ACTCGCACAAATGCCTTCGAGACATAGCTCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
51620498 ACTCGCACAAATGCCTTGGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
51620538 ACTCGCACAAATGCCTTCGGGACTTAGCTC-GAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
*
51620578 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
51620610 TTATCATCCG
Statistics
Matches: 135, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.02
40 131 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:51623378 original size:15 final size:16
Alignment explanation
Indices: 51623358--51623387 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51623348 ATGAAAACTA
51623358 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
51623373 TGATATAATGAAATA
1 TGATATAATGAAATA
51623388 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:51624912 original size:26 final size:27
Alignment explanation
Indices: 51624883--51624942 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
51624873 ATGTTTTTGC
*
51624883 AACATTGTT-GAAACGCTTTCGCAACA
1 AACATTGTTAAAAACGCTTTCGCAACA
*
51624909 AACATGTTTTTAAAAACGCTTTCGCAACA
1 AACA--TTGTTAAAAACGCTTTCGCAACA
51624938 AACAT
1 AACAT
51624943 GTTTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 4 0.14
27 1 0.03
28 4 0.14
29 20 0.69
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
AACATTGTTAAAAACGCTTTCGCAACA
Found at i:51624926 original size:29 final size:29
Alignment explanation
Indices: 51624893--51624952 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
51624883 AACATTGTTG
51624893 AAACGCTTTCGCAACAAACATGTTTTTAA
1 AAACGCTTTCGCAACAAACATGTTTTTAA
51624922 AAACGCTTTCGCAACAAACATGTTTTTAA
1 AAACGCTTTCGCAACAAACATGTTTTTAA
51624951 AA
1 AA
51624953 GTAAGGCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (29 bp):
AAACGCTTTCGCAACAAACATGTTTTTAA
Found at i:51627413 original size:18 final size:17
Alignment explanation
Indices: 51627390--51627423 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51627380 TTTAGGCTGA
51627390 AATGGGCCGTGTGGGCCC
1 AATGGG-CGTGTGGGCCC
*
51627408 AATGGGCTTGTGGGCC
1 AATGGGCGTGTGGGCC
51627424 TACATAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (17 bp):
AATGGGCGTGTGGGCCC
Found at i:51627700 original size:27 final size:27
Alignment explanation
Indices: 51627637--51627930 Score: 229
Period size: 27 Copynumber: 10.9 Consensus size: 27
51627627 TTAAGACCTT
** *
51627637 GATTTGTAAAATTACCGAATTACCC-C
1 GATTTGTAAAATTATAGAAATACCCTC
51627663 GATTTGTAAAATTATAGAAATACCCTC
1 GATTTGTAAAATTATAGAAATACCCTC
*
51627690 GATTTGTAAAATTATCGAAATACCCTC
1 GATTTGTAAAATTATAGAAATACCCTC
51627717 AGA-TTGTAAAATTATCA-AAATACCC-C
1 -GATTTGTAAAATTAT-AGAAATACCCTC
* *
51627743 CAGTTTGTAAAATTACT-GAAATACCCTTA
1 GA-TTTGTAAAATTA-TAGAAATACCC-TC
*
51627772 GA-TTATAAAATTATCA-AAATACCCTC
1 GATTTGTAAAATTAT-AGAAATACCCTC
*
51627798 GGTTTGTAAAATTAGT-GAAATACCCTC
1 GATTTGTAAAATTA-TAGAAATACCCTC
51627825 AGATTT-TAAAATTACTA-AAATACCC-C
1 -GATTTGTAAAATTA-TAGAAATACCCTC
* * ***
51627851 CAGTTTATAAAATTACCCAAATACCC-C
1 GA-TTTGTAAAATTATAGAAATACCCTC
*
51627878 TGATTTGTAAAATTACT-GAAATACCCTT
1 -GATTTGTAAAATTA-TAGAAATACCCTC
* *
51627906 G-TAGTGTAAAATTATTGAAATACCC
1 GAT-TTGTAAAATTATAGAAATACCC
51627931 CTGTAGGGTA
Statistics
Matches: 221, Mismatches: 23, Indels: 47
0.76 0.08 0.16
Matches are distributed among these distances:
25 2 0.01
26 32 0.14
27 177 0.80
28 9 0.04
29 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
GATTTGTAAAATTATAGAAATACCCTC
Found at i:51627740 original size:54 final size:54
Alignment explanation
Indices: 51627637--51627930 Score: 277
Period size: 54 Copynumber: 5.5 Consensus size: 54
51627627 TTAAGACCTT
* *
51627637 GATTTGTAAAATTACCGAATTACCC-C-GATTTGTAAAATTAT-AGAAATACCCTC
1 GATTTGTAAAATTATCGAAATACCCTCAGA-TTGTAAAATTATCA-AAATACCCTC
51627690 GATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAATTATCAAAATACCC-C
1 GATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAATTATCAAAATACCCTC
* * *
51627743 CAGTTTGTAAAATTA-CTGAAATACCCTTAGATTATAAAATTATCAAAATACCCTC
1 GA-TTTGTAAAATTATC-GAAATACCCTCAGATTGTAAAATTATCAAAATACCCTC
* *
51627798 GGTTTGTAAAATTAGT-GAAATACCCTCAGATTTTAAAATTA-CTAAAATACCC-C
1 GATTTGTAAAATTA-TCGAAATACCCTCAGATTGTAAAATTATC-AAAATACCCTC
* * * * * * *
51627851 CAGTTTATAAAATTACCCAAATACCC-CTGATTTGTAAAATTA-CTGAAATACCCTT
1 GA-TTTGTAAAATTATCGAAATACCCTCAGA-TTGTAAAATTATC-AAAATACCCTC
* *
51627906 G-TAGTGTAAAATTATTGAAATACCC
1 GAT-TTGTAAAATTATCGAAATACCC
51627931 CTGTAGGGTA
Statistics
Matches: 203, Mismatches: 24, Indels: 27
0.80 0.09 0.11
Matches are distributed among these distances:
53 32 0.16
54 167 0.82
55 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (54 bp):
GATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAATTATCAAAATACCCTC
Found at i:51627781 original size:81 final size:80
Alignment explanation
Indices: 51627640--51627930 Score: 272
Period size: 81 Copynumber: 3.6 Consensus size: 80
51627630 AGACCTTGAT
* * * * *
51627640 TTGTAAAATTACCGAATTACCCCGA-TTTGTAAAATTA-TAGAAATACCCTCGATTTGTAAAATT
1 TTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACT-GAAATACCCTAGA-TTATAAAATT
*
51627703 ATCGAAATACCCTCAGA
64 ATCAAAATACCCTCAGA
*
51627720 TTGTAAAATTATCAAAATACCCCCAGTTTGTAAAATTACTGAAATACCCTTAGATTATAAAATTA
1 TTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCC-TAGATTATAAAATTA
* *
51627785 TCAAAATACCCTCGGT
65 TCAAAATACCCTCAGA
* * * *
51627801 TTGTAAAATTAGT-GAAATACCCTCAGATTT-TAAAATTACTAAAATACCCCCAGTTTATAAAAT
1 TTGTAAAATTA-TCGAAATACCCCCAG-TTTGTAAAATTACTGAAATA-CCCTAGATTATAAAAT
* * *
51627864 TACCCAAATACCC-CTGA
63 TATCAAAATACCCTCAGA
** * *
51627881 TTTGTAAAATTA-CTGAAATA-CCCTTGTAGTGTAAAATTATTGAAATACCC
1 -TTGTAAAATTATC-GAAATACCCCCAGT-TTGTAAAATTACTGAAATACCC
51627931 CTGTAGGGTA
Statistics
Matches: 176, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
79 1 0.01
80 30 0.17
81 134 0.76
82 11 0.06
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCTAGATTATAAAATTAT
CAAAATACCCTCAGA
Found at i:51628432 original size:27 final size:27
Alignment explanation
Indices: 51628341--51628443 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
51628331 TATGCTGATT
* ** *
51628341 ATGGCTTTGTGCAAATCGTATTTAC-C
1 ATGGCTATGTGCCGATCATATTTACTC
* * *
51628367 AGTGGCTATGTGCCTATCATATTTATTG
1 A-TGGCTATGTGCCGATCATATTTACTC
* * *
51628395 ATGACTCTGTGTCGATCATATTTACTC
1 ATGGCTATGTGCCGATCATATTTACTC
* *
51628422 ATGGCTGTGTGCCGATTATATT
1 ATGGCTATGTGCCGATCATATT
51628444 ACCGTCACTG
Statistics
Matches: 59, Mismatches: 16, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
ATGGCTATGTGCCGATCATATTTACTC
Found at i:51628465 original size:32 final size:32
Alignment explanation
Indices: 51628422--51628511 Score: 101
Period size: 32 Copynumber: 2.8 Consensus size: 32
51628412 ATATTTACTC
* *
51628422 ATGGCTGTGTGCCGATTATATTACCGTCACTG
1 ATGGCTATGTGCCAATTATATTACCGTCACTG
* * *
51628454 ATGGCTATGTGCCAAACT-TATTACAGTTACTG
1 ATGGCTATGTGCC-AATTATATTACCGTCACTG
* *
51628486 ATGGCTTTGTGCCAATTATAATACCG
1 ATGGCTATGTGCCAATTATATTACCG
51628512 CTACTGAAGG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 3 0.06
32 42 0.89
33 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (32 bp):
ATGGCTATGTGCCAATTATATTACCGTCACTG
Found at i:51628517 original size:32 final size:30
Alignment explanation
Indices: 51628417--51628524 Score: 92
Period size: 32 Copynumber: 3.4 Consensus size: 30
51628407 CGATCATATT
* * *
51628417 TACTCATGGCTGTGTGCCGATTATATTACCG
1 TACTGATGGCTTTGTGCCAATTATA-TACCG
* *
51628448 TCACTGATGGCTATGTGCCAAACTTAT-TACAG
1 T-ACTGATGGCTTTGTGCC-AA-TTATATACCG
51628480 TTACTGATGGCTTTGTGCCAATTATAATACCG
1 -TACTGATGGCTTTGTGCCAATTAT-ATACCG
*
51628512 CTACTGAAGGCTT
1 -TACTGATGGCTT
51628525 AAAGCTGTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
30 4 0.06
31 3 0.05
32 50 0.79
33 2 0.03
34 4 0.06
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (30 bp):
TACTGATGGCTTTGTGCCAATTATATACCG
Found at i:51636363 original size:93 final size:93
Alignment explanation
Indices: 51636251--51636422 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
51636241 CGCCCATAAG
* *
51636251 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51636316 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
51636344 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
51636409 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
51636423 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:51636419 original size:46 final size:46
Alignment explanation
Indices: 51636244--51636419 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
51636234 TGTAACCCGC
* * *
51636244 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51636290 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51636340 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51636383 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51636420 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51637170 original size:11 final size:12
Alignment explanation
Indices: 51637145--51637175 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
51637135 CAATCATATC
51637145 ATAATTATCAAA
1 ATAATTATCAAA
51637157 ATAATTAT-AAA
1 ATAATTATCAAA
51637168 ATAATTAT
1 ATAATTAT
51637176 TTCTATCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATTATCAAA
Found at i:51643447 original size:23 final size:23
Alignment explanation
Indices: 51643417--51643460 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
51643407 TGCCTAGTTC
51643417 GAACTCGGACTCAACTCAACGTG
1 GAACTCGGACTCAACTCAACGTG
51643440 GAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACG
51643461 AGTTCGGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.16
Consensus pattern (23 bp):
GAACTCGGACTCAACTCAACGTG
Found at i:51644518 original size:31 final size:30
Alignment explanation
Indices: 51644446--51644558 Score: 149
Period size: 31 Copynumber: 3.7 Consensus size: 30
51644436 TTAGTCTTTA
* *
51644446 CATATACTGGGCCGAAGCC-TTTCGTTTAA-
1 CATATACTGGGCCGAAGCCTTTTC-ATAAAT
*
51644475 CAGATACTGGGCCGAAGCCTTTTCATAAAT
1 CATATACTGGGCCGAAGCCTTTTCATAAAT
51644505 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
*
51644536 CATATCACTGGGCTGAAGCCTTT
1 CATAT-ACTGGGCCGAAGCCTTT
51644559 ATTGTAAACG
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
29 21 0.28
30 8 0.11
31 47 0.62
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (30 bp):
CATATACTGGGCCGAAGCCTTTTCATAAAT
Found at i:51644642 original size:42 final size:42
Alignment explanation
Indices: 51644582--51644673 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
51644572 TGGCCCATAG
* *
51644582 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGGAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
51644624 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
51644666 GCCCATTT
1 GCCCATTT
51644674 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:51644849 original size:25 final size:25
Alignment explanation
Indices: 51644821--51644915 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
51644811 CTCTTTTAAT
*
51644821 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GGTA
51644846 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
51644871 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
51644896 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
51644916 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
25 61 0.94
26 4 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:51645751 original size:27 final size:27
Alignment explanation
Indices: 51645721--51645785 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
51645711 GGGCATATTC
51645721 ATCATTTTACCATACAAGGG-TATTACG
1 ATCATTTTACCATACAAGGGCT-TTACG
* * *
51645748 ATCAGTTTACCCTACAGGGGCTTTACG
1 ATCATTTTACCATACAAGGGCTTTACG
* *
51645775 GTCTTTTTACC
1 ATCATTTTACC
51645786 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCATACAAGGGCTTTACG
Found at i:51645869 original size:27 final size:27
Alignment explanation
Indices: 51645839--51645979 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
51645829 GTAAATCTAC
51645839 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
51645866 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
51645892 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** * **
51645922 AAATCAGGGGTATTTTGGAAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** * *
51645949 AAATTAAGGGTATTTCGGTAATTTGGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
51645976 AAAC
1 AAAC
51645980 TAAAGTATTC
Statistics
Matches: 90, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 64 0.71
28 7 0.08
29 17 0.19
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:51645945 original size:56 final size:54
Alignment explanation
Indices: 51645836--51645979 Score: 148
Period size: 56 Copynumber: 2.6 Consensus size: 54
51645826 TTGGTAAATC
* *
51645836 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* ** * *
51645891 TAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTT-TGGA-AATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT--ATAATTT
* * *
51645946 TACAAATTAAGGGTATTTCGGTAATTTGGTAAAC
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
51645980 TAAAGTATTC
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
54 23 0.32
55 14 0.19
56 35 0.48
57 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:51647289 original size:37 final size:36
Alignment explanation
Indices: 51647239--51647316 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
51647229 TTATTACGAA
* * *
51647239 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATC-G
*
51647276 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
51647312 GTCTT
1 GTCTT
51647317 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 6 0.16
37 31 0.84
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:51647507 original size:47 final size:47
Alignment explanation
Indices: 51647431--51648318 Score: 1399
Period size: 47 Copynumber: 18.9 Consensus size: 47
51647421 CTTCGGGACT
* * * * * *
51647431 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
51647478 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51647525 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647572 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647621 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51647670 TATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647716 TATCACATATATACACTTTCACATTCAT--CATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51647760 TATCACATATATATACACTTTCACATTC-TCACATC-GCCATTAGGCCA
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51647807 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51647854 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647901 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647947 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51647995 TATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51648043 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51648089 TATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
51648137 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51648183 TATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
51648231 TATCACATATATACACTTTCACATTC-GCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51648277 TATCACATATATACACTTTCATATTCATCACATCGG-CATTAG
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
51648319 CCATACTATC
Statistics
Matches: 799, Mismatches: 21, Indels: 43
0.93 0.02 0.05
Matches are distributed among these distances:
44 19 0.02
45 28 0.04
46 180 0.23
47 351 0.44
48 126 0.16
49 95 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:51648126 original size:236 final size:233
Alignment explanation
Indices: 51647429--51648318 Score: 1449
Period size: 236 Copynumber: 3.8 Consensus size: 233
51647419 CCCTTCGGGA
* * * * * * *
51647429 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACAC
51647494 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC-TCACATC
51647559 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
129 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTAT
51647624 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
191 CACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51647668 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACAC
51647732 TTTCACATTCAT--CATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCTCACAT
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCTCACAT
*
51647794 C-GCCATTAGGCCATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
128 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATC
51647858 AC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
192 ACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51647899 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATACA
51647964 CTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCAC
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTC-TCAC
*
51648028 ATC-GCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTAT
126 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTAT
51648092 CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
191 CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51648135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATACA
*
51648200 CTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACACTTTCACATTCGCACATC
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCTCACATC
*
51648264 GGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACATCGG-CATTAG
129 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
51648319 CCATACTATC
Statistics
Matches: 624, Mismatches: 14, Indels: 32
0.93 0.02 0.05
Matches are distributed among these distances:
231 88 0.14
232 5 0.01
233 78 0.12
234 66 0.11
235 84 0.13
236 216 0.35
237 22 0.04
238 28 0.04
239 37 0.06
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (233 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCTCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACAA
TATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51650124 original size:40 final size:40
Alignment explanation
Indices: 51649681--51650112 Score: 643
Period size: 40 Copynumber: 10.8 Consensus size: 40
51649671 GAGAATTAAG
*
51649681 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
51649721 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
51649761 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
51649801 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
51649841 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
51649881 AGTGATGTATCCGGGCTAAGTCTAGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
51649921 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
51649961 AGTGATGTAT-CTGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * *
51650000 AGTGATGTATCCGGACTAAGT-TCCGTTATAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CG-AAGAGCATTCGTGCT
* * ** *
51650041 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
51650081 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
51650113 ATCATGCTGG
Statistics
Matches: 356, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
39 38 0.11
40 287 0.81
41 31 0.09
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:51651135 original size:37 final size:37
Alignment explanation
Indices: 51651074--51651152 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
51651064 TTATTACGAA
** * *
51651074 GTCTTACCCGGACTTAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51651111 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51651148 GTCTT
1 GTCTT
51651153 TAGAGCTCGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51651391 original size:47 final size:47
Alignment explanation
Indices: 51651271--51651683 Score: 625
Period size: 47 Copynumber: 8.7 Consensus size: 47
51651261 CCCTTCGGGA
* * * * * *
51651271 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51651318 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51651364 CTTATCGCATAAATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51651411 CTTATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51651459 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51651506 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51651553 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51651602 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51651649 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
51651684 AGAATCCTAA
Statistics
Matches: 338, Mismatches: 21, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
46 68 0.20
47 181 0.54
48 17 0.05
49 72 0.21
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51651538 original size:142 final size:142
Alignment explanation
Indices: 51651271--51651683 Score: 645
Period size: 142 Copynumber: 2.9 Consensus size: 142
51651261 CCCTTCGGGA
* * * * * *
51651271 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCAC-ATCGCCATTAGGCCTTATCACATATATAC
* *
51651333 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATAAATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
51651398 TCGTCCATTAGGC
130 TCGGCCATTAGGC
51651411 CTTATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACA
*
51651476 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCTCATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
51651541 CGGCCATTTGGC
131 CGGCCATTAGGC
51651553 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
* * *
51651618 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATCAC
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCAC
51651682 AT
129 AT
51651684 AGAATCCTAA
Statistics
Matches: 253, Mismatches: 15, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
140 10 0.04
141 11 0.04
142 146 0.58
143 86 0.34
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:51651590 original size:96 final size:96
Alignment explanation
Indices: 51651271--51651662 Score: 611
Period size: 96 Copynumber: 4.1 Consensus size: 96
51651261 CCCTTCGGGA
* * * * * *
51651271 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51651333 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
51651364 CTTATCGCATA-A-ATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
51651427 ACACTTTCACATTCATCACATC-GCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
51651459 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
51651522 ACTTTCTCATTCATCACATCGGCCATTTGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51651553 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51651618 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
51651649 CTTATCTCATATAT
1 CTTATCACATATAT
51651663 GCATGTTCAC
Statistics
Matches: 274, Mismatches: 15, Indels: 17
0.90 0.05 0.06
Matches are distributed among these distances:
93 67 0.24
94 23 0.08
95 59 0.22
96 125 0.46
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51660213 original size:29 final size:29
Alignment explanation
Indices: 51660171--51660228 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
51660161 AGATTCATTT
51660171 ACTTACAATGTTTCCTTTATAAGAAACTA
1 ACTTACAATGTTTCCTTTATAAGAAACTA
51660200 ACTTACAATGTTTCCTTTATAAGAAACTA
1 ACTTACAATGTTTCCTTTATAAGAAACTA
51660229 CACTCAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (29 bp):
ACTTACAATGTTTCCTTTATAAGAAACTA
Found at i:51674536 original size:15 final size:14
Alignment explanation
Indices: 51674500--51674554 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
51674490 TCTATTGATC
51674500 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
51674514 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
*
51674528 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
51674543 GAAAGAAAAGAA
1 GAGA-AAAAGAA
51674555 TGAGGAGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:51695419 original size:16 final size:15
Alignment explanation
Indices: 51695398--51695429 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
51695388 GATACTGAAG
51695398 TAGCTTCGGCTATAAA
1 TAGCTTCGGCTA-AAA
51695414 TAGCTTCGGCTAAAA
1 TAGCTTCGGCTAAAA
51695429 T
1 T
51695430 CATTTTAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (15 bp):
TAGCTTCGGCTAAAA
Found at i:51698474 original size:27 final size:27
Alignment explanation
Indices: 51698454--51698761 Score: 317
Period size: 27 Copynumber: 11.6 Consensus size: 27
51698444 ACATACGAGT
51698454 AAAACAATCATTTTACCACATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
* ** *
51698481 AAAACAGTCCCTTTACCTCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
*
51698508 AAAACAATCATTTTACC-CTATAAGGGG
1 AAAACAATCATTTTACCAC-ATAAGGGC
* *
51698535 AAAA-AAGTCATTTTACCCCATAAGGAC
1 AAAACAA-TCATTTTACCACATAAGGGC
* * * *
51698562 AAAACAGTCATTTTGCCTCATAAGGGT
1 AAAACAATCATTTTACCACATAAGGGC
* *
51698589 AAAAAAATCATTTTACCCCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
*
51698616 AAAACATTCATTTTA-CACCAT-A----
1 AAAACAATCATTTTACCA-CATAAGGGC
* *
51698638 AAAACATTCATTTTACCACATAAAGGC
1 AAAACAATCATTTTACCACATAAGGGC
* *
51698665 AAAACAGTCATTTTACCCCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
* *
51698692 ATAACAATCATTTTACCTCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
*
51698719 AAAACAATCATTTTACCCCCATAAGGGC
1 AAAACAATCATTTTA-CCACATAAGGGC
* *
51698747 AAAATAGTCATTTTA
1 AAAACAATCATTTTA
51698762 TCGATTAAGG
Statistics
Matches: 236, Mismatches: 33, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
22 18 0.08
23 3 0.01
26 5 0.02
27 184 0.78
28 26 0.11
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (27 bp):
AAAACAATCATTTTACCACATAAGGGC
Found at i:51698641 original size:22 final size:22
Alignment explanation
Indices: 51698616--51698661 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
51698606 CCATAAGGGC
51698616 AAAACATTCATTTTA-CACCATA
1 AAAACATTCATTTTACCA-CATA
51698638 AAAACATTCATTTTACCACATA
1 AAAACATTCATTTTACCACATA
51698660 AA
1 AA
51698662 GGCAAAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAACATTCATTTTACCACATA
Found at i:51699109 original size:47 final size:47
Alignment explanation
Indices: 51699056--51699150 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
51699046 AACGGCCCAA
* * *
51699056 AACGGCCTCGGCCCATGAAATCTCTCATGGATGGCCTCAACGTTCTT
1 AACGGCCTCGACCCATGAAATCGCTCATGGATGGACTCAACGTTCTT
*
51699103 AACGGCCTCGACCCATGAAATCGCTCATGGATGGACTCAATGTTCTT
1 AACGGCCTCGACCCATGAAATCGCTCATGGATGGACTCAACGTTCTT
51699150 A
1 A
51699151 CACCCATGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (47 bp):
AACGGCCTCGACCCATGAAATCGCTCATGGATGGACTCAACGTTCTT
Found at i:51704374 original size:85 final size:84
Alignment explanation
Indices: 51704231--51704437 Score: 317
Period size: 85 Copynumber: 2.5 Consensus size: 84
51704221 CGTGTGATGG
* * * *
51704231 ACACGGCCTAGCACATGGGCGTGTGCCTTGGACGTGTGACATTTTGGGGGTGCTGATGTCAGAAA
1 ACACGGGCTAGGACACGGGCGTGTGCC-TGGCCGTGTGACATTTTGGGGGTGCTGATGTCAGAAA
* *
51704296 TAGAATGTCCATGTTTTTGT
65 CAGAATGTCAATGTTTTTGT
51704316 ACACGGGCTAGGACACGGGCGTGTGCCTGGGCCGTGTGACATTTTGGGGGTGCTGATGTCAGAAA
1 ACACGGGCTAGGACACGGGCGTGTGCCT-GGCCGTGTGACATTTTGGGGGTGCTGATGTCAGAAA
51704381 CAGAATGTCAATGTTTTTGT
65 CAGAATGTCAATGTTTTTGT
* *
51704401 ACACGGGCTAAGACACGGGCGTGT-CATGGCCGTGTGA
1 ACACGGGCTAGGACACGGGCGTGTGCCTGGCCGTGTGA
51704438 GCGACACAAG
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
83 10 0.09
84 3 0.03
85 100 0.88
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (84 bp):
ACACGGGCTAGGACACGGGCGTGTGCCTGGCCGTGTGACATTTTGGGGGTGCTGATGTCAGAAAC
AGAATGTCAATGTTTTTGT
Found at i:51711933 original size:49 final size:50
Alignment explanation
Indices: 51711861--51712085 Score: 253
Period size: 49 Copynumber: 4.5 Consensus size: 50
51711851 TGAGGTCACG
51711861 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* * ** * * * *
51711910 TGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGATAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-AGGTCGCA
* * ** *
51711961 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGATGGTTAGGT-GACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCG-CA
*
51712011 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT-GGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATTAGGTCGCA
51712060 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51712086 TGAATACCAG
Statistics
Matches: 144, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
49 66 0.46
50 44 0.31
51 34 0.24
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
Found at i:51714322 original size:46 final size:46
Alignment explanation
Indices: 51714175--51714327 Score: 148
Period size: 46 Copynumber: 3.3 Consensus size: 46
51714165 ATTGTGAGCT
* * * * *
51714175 AGTGTAAGACATGTCTGGGACAAGCATCAACCAC-ATTATGTGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTAAGCC
* * * * * *
51714221 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCC
*
51714269 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
51714315 AGTGTAAGACATG
1 AGTGTAAGACATG
51714328 CATCGGCTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
46 36 0.43
47 28 0.33
48 19 0.23
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
Found at i:51716132 original size:93 final size:93
Alignment explanation
Indices: 51716020--51716285 Score: 471
Period size: 93 Copynumber: 2.9 Consensus size: 93
51716010 CGCCCATAAG
* * * *
51716020 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCATCCATAAATGAACTCGGACTCAACTC
*
51716084 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
51716113 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
51716178 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
51716206 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
51716271 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
51716286 CAAATATCCC
Statistics
Matches: 167, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
92 2 0.01
93 165 0.99
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51716279 original size:46 final size:46
Alignment explanation
Indices: 51716021--51716281 Score: 285
Period size: 46 Copynumber: 5.6 Consensus size: 46
51716011 GCCCATAAGC
* * *
51716021 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCATCCATAAAT
* * * * * * ** *
51716067 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATCCAT-AAAT
51716114 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
* * * * ** *
51716160 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATCCAT-AAAT
51716207 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
51716253 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
51716282 TGCCCAAATA
Statistics
Matches: 175, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
45 2 0.01
46 101 0.58
47 72 0.41
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
Found at i:51718470 original size:21 final size:22
Alignment explanation
Indices: 51718431--51718471 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
51718421 TCGAATTAGT
*
51718431 CACACGGGCGTGTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
51718453 CACACAGGCGTG-TGCCCCT
1 CACACAGGCGTGTTGCCCCT
51718472 ATATTCAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACAGGCGTGTTGCCCCTCC
Found at i:51719101 original size:43 final size:43
Alignment explanation
Indices: 51719054--51719171 Score: 195
Period size: 43 Copynumber: 2.8 Consensus size: 43
51719044 TTATATAACG
51719054 ATGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACA
1 ATGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACA
* *
51719097 ATGCCAATGTCCCAGACATGGTCTTACGTGTAAACACAATACA
1 ATGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACA
51719140 ATGCCAATGTCCCT-AGCATGGTCTTACA-GTAA
1 ATGCCAATGTCCCTGA-CATGGTCTTACATGTAA
51719172 TCTCATCTTG
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
42 5 0.07
43 65 0.93
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACA
Found at i:51723231 original size:46 final size:46
Alignment explanation
Indices: 51723164--51723333 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
51723154 TGTAACCCGC
** *
51723164 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
*
51723210 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* *** * * *
51723256 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
51723303 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
51723334 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 59 0.59
47 29 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:51723358 original size:46 final size:44
Alignment explanation
Indices: 51723215--51723358 Score: 98
Period size: 46 Copynumber: 3.1 Consensus size: 44
51723205 CGCATCCATA
* *
51723215 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * * *
51723264 --CGAACTTGGACTCAACTCAACGAGTTCAGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCAAATCC-T
51723307 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
51723354 AGTGA
1 AGTGA
51723359 CATGTCACTT
Statistics
Matches: 73, Mismatches: 12, Indels: 23
0.68 0.11 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 1 0.01
46 30 0.41
47 25 0.34
48 5 0.07
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:51726959 original size:41 final size:41
Alignment explanation
Indices: 51726856--51726960 Score: 122
Period size: 40 Copynumber: 2.6 Consensus size: 41
51726846 TCGGGGTTTA
* * *
51726856 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
* * * * *
51726897 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
*
51726937 AATCTGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGC
51726961 TTTTTGAGGC
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 32 0.64
41 18 0.36
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
Found at i:51735082 original size:47 final size:47
Alignment explanation
Indices: 51735019--51735555 Score: 813
Period size: 47 Copynumber: 11.4 Consensus size: 47
51735009 CCCTTCGGGA
* * * *
51735019 CTTATCACATTTATACACTTTCACATCCATCACATTGTCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
51735066 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * * *
51735113 CTTATCTCATATATACACTTTCACATTCATCACGTTGGTCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
51735160 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
51735207 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
51735254 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
51735303 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
51735350 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
51735397 CTTATCACATATACACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
51735444 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
51735491 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
51735538 CTTATCACATATACACAC
1 CTTATCACATATATACAC
51735556 CTTGTACATC
Statistics
Matches: 448, Mismatches: 40, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 403 0.90
49 45 0.10
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:51738954 original size:41 final size:41
Alignment explanation
Indices: 51738892--51739040 Score: 176
Period size: 41 Copynumber: 3.7 Consensus size: 41
51738882 TCGGGGTTTA
*
51738892 AATCCGAGCTTTGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * *
51738933 AATCCGAGCTTGGTCTTGAAGGGCTTTTAAG-TAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
51738973 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
51739013 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
51739041 TGAGTCAGCG
Statistics
Matches: 85, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
39 19 0.22
40 19 0.22
41 47 0.55
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:51741753 original size:27 final size:26
Alignment explanation
Indices: 51741681--51741796 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
51741671 ATGGAGGAAG
*
51741681 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTAGTGGCTATGCCAC-AATATC
*
51741708 TATTTCTAGTGGCTATGCCACGAATATC
1 T-GTTCTAGTGGCTATGCCAC-AATATC
* *
51741736 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTAGTGGCTATGCCACAATATC
* * *
51741762 TGTATCTAGTGACTCTGTCACAATATC
1 TGT-TCTAGTGGCTATGCCACAATATC
*
51741789 TGTACTAG
1 TGTTCTAG
51741797 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 13 0.17
27 40 0.52
28 24 0.31
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
TGTTCTAGTGGCTATGCCACAATATC
Found at i:51750212 original size:29 final size:29
Alignment explanation
Indices: 51750178--51750237 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
51750168 TTAATATAAG
*
51750178 ACTGATAACTGTTATTTTAATTGAATTCA
1 ACTGATAACTGTTATTTTAAATGAATTCA
51750207 ACTGATAACTGTTATTTTAAATGAATTCA
1 ACTGATAACTGTTATTTTAAATGAATTCA
51750236 AC
1 AC
51750238 CAACTATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (29 bp):
ACTGATAACTGTTATTTTAAATGAATTCA
Found at i:51754222 original size:81 final size:81
Alignment explanation
Indices: 51754106--51754254 Score: 237
Period size: 81 Copynumber: 1.8 Consensus size: 81
51754096 TTTTGCACTT
**
51754106 ATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAA
1 ATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGTAAAA
51754171 TGATCGAAAAACCCTA
66 TGATCGAAAAACCCTA
* * *
51754187 ATAGGGTAAAAT-ATCCGAAATACCCTCATAGGGTAAAATGTCTGAAATACCCCTGTAAAGTAAA
1 ATAGGGTAAAATGA-CCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGTAAA
51754251 ATGA
65 ATGA
51754255 CTGTAATACC
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
80 1 0.02
81 61 0.98
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (81 bp):
ATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGTAAAA
TGATCGAAAAACCCTA
Found at i:51754276 original size:27 final size:27
Alignment explanation
Indices: 51754103--51754281 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
51754093 CTATTTTGCA
51754103 CTTATAGGGTAAAATGACCGAAATACC
1 CTTATAGGGTAAAATGACCGAAATACC
*
51754130 CTCATAGGGTAAAATGACCGAAATACC
1 CTTATAGGGTAAAATGACCGAAATACC
* * *
51754157 CCTATAGGGTAAAATGATCGAAAAACC
1 CTTATAGGGTAAAATGACCGAAATACC
*
51754184 CTAATAGGGTAAAAT-ATCCGAAATACC
1 CTTATAGGGTAAAATGA-CCGAAATACC
* * *
51754211 CTCATAGGGTAAAATGTCTGAAATACC
1 CTTATAGGGTAAAATGACCGAAATACC
* * ** * *
51754238 CCTGTAAAGTAAAATGACTGTAATACC
1 CTTATAGGGTAAAATGACCGAAATACC
* *
51754265 TTTATAAGGTAAAATGA
1 CTTATAGGGTAAAATGA
51754282 TAGATTTGTT
Statistics
Matches: 127, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.99
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (27 bp):
CTTATAGGGTAAAATGACCGAAATACC
Found at i:51754276 original size:81 final size:81
Alignment explanation
Indices: 51754103--51754281 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 81
51754093 CTATTTTGCA
**
51754103 CTTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAGGGTA
1 CTTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGTA
51754168 AAATGATCGAAAAACC
66 AAATGATCGAAAAACC
* * * *
51754184 CTAATAGGGTAAAAT-ATCCGAAATACCCTCATAGGGTAAAATGTCTGAAATACCCCTGTAAAGT
1 CTTATAGGGTAAAATGA-CCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGT
* *
51754248 AAAATGA-CTGTAATACC
65 AAAATGATC-GAAAAACC
* *
51754265 TTTATAAGGTAAAATGA
1 CTTATAGGGTAAAATGA
51754282 TAGATTTGTT
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.02
81 81 0.96
82 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (81 bp):
CTTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCTATAAAGTA
AAATGATCGAAAAACC
Found at i:51754634 original size:18 final size:18
Alignment explanation
Indices: 51754611--51754687 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
51754601 TCTACTTGCA
51754611 TACTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
51754629 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
* * *
51754647 TGCTACACTGATTACTAT
1 TACTGCACTGATTACTGT
* *
51754665 TATTGCACTGATTAATGT
1 TACTGCACTGATTACTGT
51754683 TACTG
1 TACTG
51754688 AAATGGGCTA
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
17 1 0.02
18 42 0.95
19 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Done.