Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 152 of 295
Found at i:51757900 original size:27 final size:27
Alignment explanation
Indices: 51757870--51758079 Score: 192
Period size: 27 Copynumber: 7.7 Consensus size: 27
51757860 GACTGTTTTT
*
51757870 CCCTTATAGGGCT-AAATGACCAAAATA
1 CCCTCATAGGG-TAAAATGACCAAAATA
* * *
51757897 CCCTCATAAGGTAAAAATGATCGAAATA
1 CCCTCATAGGGT-AAAATGACCAAAATA
*
51757925 CCC-CTATTA-GGTAAAATGACCGAAATA
1 CCCTC-A-TAGGGTAAAATGACCAAAATA
* *
51757952 CCCTCATAAGATAAAATGACCAAAATA
1 CCCTCATAGGGTAAAATGACCAAAATA
51757979 CCCTCATAGGGTAAAATGACCAAAATA
1 CCCTCATAGGGTAAAATGACCAAAATA
* * *
51758006 CCCCCATAGGGTAGAATGACCGAAATA
1 CCCTCATAGGGTAAAATGACCAAAATA
** ** * * *
51758033 CTTTTGTAAGGTAAAATGACTATAATA
1 CCCTCATAGGGTAAAATGACCAAAATA
* *
51758060 CCCTTATAAGGTAAAATGAC
1 CCCTCATAGGGTAAAATGAC
51758080 AGATTTGTTC
Statistics
Matches: 152, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
26 3 0.02
27 127 0.84
28 20 0.13
29 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (27 bp):
CCCTCATAGGGTAAAATGACCAAAATA
Found at i:51757992 original size:54 final size:54
Alignment explanation
Indices: 51757870--51758079 Score: 219
Period size: 54 Copynumber: 3.9 Consensus size: 54
51757860 GACTGTTTTT
* *
51757870 CCCTTATAGGGCT-AAATGACCAAAATACCCTCATAAGGTAAAAATGATCGAAATA
1 CCCTCATAGGG-TAAAATGACCAAAATACCCTCATAAGGT-AAAATGACCGAAATA
* * *
51757925 CCC-CTATTA-GGTAAAATGACCGAAATACCCTCATAAGATAAAATGACCAAAATA
1 CCCTC-A-TAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGACCGAAATA
* * *
51757979 CCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATA
1 CCCTCATAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGACCGAAATA
** ** * * * *
51758033 CTTTTGTAAGGTAAAATGACTATAATACCCTTATAAGGTAAAATGAC
1 CCCTCATAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGAC
51758080 AGATTTGTTC
Statistics
Matches: 128, Mismatches: 22, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
53 2 0.02
54 93 0.73
55 31 0.24
56 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (54 bp):
CCCTCATAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGACCGAAATA
Found at i:51758032 original size:81 final size:81
Alignment explanation
Indices: 51757883--51758079 Score: 252
Period size: 81 Copynumber: 2.4 Consensus size: 81
51757873 TTATAGGGCT
* * *
51757883 AAATGACCAAAATACCCTCATAAGGTAAAAATGATCGAAATACCCCTATTAGGTAAAATGACCGA
1 AAATGACCAAAATACCCTCATAAGGT-AAAATGACCAAAATACCCCCATTAGGTAAAATGACCGA
51757948 AATACCCTCATAAGATA
65 AATACCCTCATAAGATA
* *
51757965 AAATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCA-TAGGGTAGAATGACCGA
1 AAATGACCAAAATACCCTCATAAGGTAAAATGACCAAAATACCCCCATTA-GGTAAAATGACCGA
** ** *
51758029 AATACTTTTGTAAGGTA
65 AATACCCTCATAAGATA
* * *
51758046 AAATGACTATAATACCCTTATAAGGTAAAATGAC
1 AAATGACCAAAATACCCTCATAAGGTAAAATGAC
51758080 AGATTTGTTC
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.02
81 73 0.73
82 25 0.25
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (81 bp):
AAATGACCAAAATACCCTCATAAGGTAAAATGACCAAAATACCCCCATTAGGTAAAATGACCGAA
ATACCCTCATAAGATA
Found at i:51758511 original size:34 final size:34
Alignment explanation
Indices: 51758473--51758567 Score: 127
Period size: 34 Copynumber: 2.8 Consensus size: 34
51758463 CACTGATTAA
* *
51758473 TGTTACTAAAATGGGCTAAAGCCCAGACCGCTAC
1 TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
* **
51758507 TGTTACTGAAATGGGATAAGGCCCAGATTGCTAC
1 TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
* *
51758541 TGTTACTGATATGGGCTTAGGCCCAGA
1 TGTTACTGAAATGGGCTAAGGCCCAGA
51758568 ATGTATTCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (34 bp):
TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
Found at i:51760792 original size:38 final size:41
Alignment explanation
Indices: 51760737--51760840 Score: 110
Period size: 43 Copynumber: 2.6 Consensus size: 41
51760727 TGAGATTAAG
*
51760737 TGTAAGACCGTATCTGGGATATG-A-C-ATA-GAGGA-CTTCA
1 TGTAAGACCATATCTGGGATATGCATCGATATGA-GATC-TCA
* *
51760775 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCTCA
1 TGTAAGACCATATCTGGGATA-T-GCATCGATATGAGATCTCA
51760818 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
51760841 GCATTGGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
38 18 0.33
39 1 0.02
40 1 0.02
41 2 0.04
42 2 0.04
43 27 0.50
44 3 0.06
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGCATCGATATGAGATCTCA
Found at i:51762702 original size:46 final size:46
Alignment explanation
Indices: 51762652--51762827 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51762642 TGGTTGAGCA
51762652 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51762698 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51762743 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51762791 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51762828 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51762808 original size:93 final size:93
Alignment explanation
Indices: 51762649--51762820 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51762639 GGATGGTTGA
* *
51762649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51762714 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51762742 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51762807 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51762821 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51767701 original size:21 final size:21
Alignment explanation
Indices: 51767675--51767726 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
51767665 CGGGTAGTAC
*
51767675 GAAAATGTATAATGACTTGAA
1 GAAAATGTATAATAACTTGAA
51767696 GAAAATGTATAATAACTTGAA
1 GAAAATGTATAATAACTTGAA
51767717 GAAAATGTAT
1 GAAAATGTAT
51767727 TGGTGGAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.50, C:0.04, G:0.17, T:0.29
Consensus pattern (21 bp):
GAAAATGTATAATAACTTGAA
Found at i:51769824 original size:46 final size:46
Alignment explanation
Indices: 51769774--51769949 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
51769764 TGATTGAGCA
51769774 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51769820 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51769865 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51769913 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51769950 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51769930 original size:93 final size:93
Alignment explanation
Indices: 51769771--51769942 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
51769761 GGATGATTGA
*
51769771 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
51769836 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51769864 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
51769928 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
51769943 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51777787 original size:43 final size:42
Alignment explanation
Indices: 51777698--51777816 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
51777688 TGAGATTACT
* * *
51777698 TGTAAGACCATATCTGAGATATGGAATTGATATGAGACTTCG
1 TGTAAGACCATATCTGAGATATGGCATTGATATGAGACTCCA
* * *
51777740 TGTAAGACTATATCTGGGCTATTGGCATTGATATGAGA-TGCCA
1 TGTAAGACCATATCTGAGATA-TGGCATTGATATGAGACT-CCA
* *
51777783 TGTAAGACCATATCTGTGATATGGCATTGGTATG
1 TGTAAGACCATATCTGAGATATGGCATTGATATG
51777817 GTGCTATGAG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTGAGATATGGCATTGATATGAGACTCCA
Found at i:51788124 original size:39 final size:40
Alignment explanation
Indices: 51788024--51788208 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
51788014 TCGAATGATG
* * *
51788024 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51788063 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
51788104 TCTGGGCTAAG-CCCGAAGGCAATGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51788143 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51788182 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51788209 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51788230 original size:79 final size:79
Alignment explanation
Indices: 51788077--51788241 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
51788067 GGACTAAGAT
* * **
51788077 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCAATGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAATGGAACGAGTTACTAA
*
51788142 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
51788156 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAATGGAACGAGTTA-C
* *
51788219 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51788235 CCGAAGG
1 CCGAAGG
51788242 TATGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAATGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51795147 original size:47 final size:47
Alignment explanation
Indices: 51795094--51795493 Score: 629
Period size: 47 Copynumber: 8.5 Consensus size: 47
51795084 ATTCAGCCAA
*
51795094 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51795141 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
51795188 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
51795235 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
51795284 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
51795331 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
51795378 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
51795425 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51795472 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
51795494 TCCCGAAGGG
Statistics
Matches: 329, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 284 0.86
49 45 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:51795359 original size:143 final size:141
Alignment explanation
Indices: 51795094--51795493 Score: 638
Period size: 143 Copynumber: 2.8 Consensus size: 141
51795084 ATTCAGCCAA
* *
51795094 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51795159 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
51795224 GTGATGAATGT
131 GTGATGAATGT
*
51795235 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
51795300 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
64 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51795365 ATGTGATGAATGT
129 ATGTGATGAATGT
*
51795378 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
51795443 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51795494 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 18, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
141 103 0.43
143 136 0.57
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGT
Found at i:51795668 original size:37 final size:37
Alignment explanation
Indices: 51795612--51795690 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
51795602 CCGAGCTCTA
* * *
51795612 AAGACCTGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51795649 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51795686 AAGAC
1 AAGAC
51795691 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51799313 original size:23 final size:24
Alignment explanation
Indices: 51799277--51799321 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
51799267 TAAAGAAATG
*
51799277 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
*
51799301 GAAAACAAA-AGAAAAAAAATG
1 GAAAAAAAAGAGAAAAAAAATG
51799322 TGTCCATCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Found at i:51800692 original size:40 final size:40
Alignment explanation
Indices: 51800546--51800727 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
51800536 GAATGATGTT
* * * *
51800546 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* *
51800586 CGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACT-AATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
51800625 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* * *
51800664 CGAGTTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
51800704 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
51800728 AATGAGTAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
38 22 0.18
39 22 0.18
40 65 0.55
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:51810677 original size:24 final size:24
Alignment explanation
Indices: 51810650--51810698 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
51810640 TGGATAAAGT
51810650 TAGAACCGTCAAGGATTTTCAAGA
1 TAGAACCGTCAAGGATTTTCAAGA
51810674 TAGAACCGTCAAGGATTTTCAAGA
1 TAGAACCGTCAAGGATTTTCAAGA
51810698 T
1 T
51810699 GCTTTTCCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (24 bp):
TAGAACCGTCAAGGATTTTCAAGA
Found at i:51813932 original size:40 final size:40
Alignment explanation
Indices: 51813828--51814031 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
51813818 AAACCAAGTA
* * * *
51813828 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51813867 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51813906 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51813946 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51813986 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51814026 CCTTCG
1 CCTTCG
51814032 TTATCATCCA
Statistics
Matches: 149, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.02
39 37 0.25
40 109 0.73
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51818294 original size:39 final size:39
Alignment explanation
Indices: 51818238--51818316 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
51818228 ACATATATAC
* *
51818238 GAATGAGTAGACCTGGGATTTATCAATGCAATAACTTTA
1 GAATGAGTAGACCTGGGATCTATCAATGCAATAAATTTA
* *
51818277 GAATGTGTAGACTTGGGATCTATCAATGCAATAAATTTA
1 GAATGAGTAGACCTGGGATCTATCAATGCAATAAATTTA
51818316 G
1 G
51818317 TATCATAGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (39 bp):
GAATGAGTAGACCTGGGATCTATCAATGCAATAAATTTA
Found at i:51822559 original size:40 final size:40
Alignment explanation
Indices: 51822488--51822690 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
51822478 GGATGATAAT
* * *
51822488 GAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCC
51822528 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
51822568 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCT
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
51822608 GAAGGCATTTGTGTGAGTTACTATAACCGGGCT-AGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * * *
51822647 GAAGACATTTGAGCGAG-TAGCTATAT-CTGGCTAAATCCC
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCC
51822686 GAAGG
1 GAAGG
51822691 TACTTGGTTT
Statistics
Matches: 146, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
38 7 0.05
39 33 0.23
40 105 0.72
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:51827351 original size:93 final size:93
Alignment explanation
Indices: 51827192--51827363 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
51827182 GCCCATAAGC
* * * *
51827192 GAACTCAGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATGAGTGAACTCGGACTCAGCTCAA
1 GAACTCAGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51827257 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* * *
51827285 GAACTCAGCCTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51827350 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
51827364 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:51827359 original size:46 final size:46
Alignment explanation
Indices: 51827184--51827359 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
51827174 TGTAACCCGC
* * * * *
51827184 CCATAAGCGAACTCAGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
51827230 CCATGAGTGAACTCGGACTCAGCTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51827280 -C-TCA-TGAACTCAGCCTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51827323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
51827360 TGCCCAAACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51827378 original size:46 final size:45
Alignment explanation
Indices: 51827235--51827378 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
51827225 CGCATCCATG
* *
51827235 AGTGAACTCGGACTCAGCTCAACGAGTTCGGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATCT
* * * * * *
51827282 CA-TGAACTCAGCCTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCT
*
51827328 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACAT-CT
51827374 AGTGA
1 AGTGA
51827379 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 32 0.42
47 30 0.39
48 1 0.01
49 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCT
Found at i:51829060 original size:40 final size:40
Alignment explanation
Indices: 51828956--51829159 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
51828946 AAACCAAGTA
* * * *
51828956 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51828995 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51829034 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
51829074 CCTTCGACACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51829114 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51829154 CCTTCG
1 CCTTCG
51829160 TTATCATCCA
Statistics
Matches: 145, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 3 0.02
39 37 0.26
40 105 0.72
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51833264 original size:15 final size:15
Alignment explanation
Indices: 51833232--51833317 Score: 81
Period size: 15 Copynumber: 5.9 Consensus size: 15
51833222 AGATAACAAG
51833232 GAAA-CCAA-ATAAA
1 GAAATCCAAGATAAA
*
51833245 GAAATCCAAGATAGA
1 GAAATCCAAGATAAA
51833260 GAAATCC-AGAATAAA
1 GAAATCCAAG-ATAAA
*
51833275 GAATTCC-AGAATAAA
1 GAAATCCAAG-ATAAA
* *
51833290 GAGATCCAGGATAAA
1 GAAATCCAAGATAAA
*
51833305 GAAACCCAAGATA
1 GAAATCCAAGATA
51833318 TGATACTATG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
13 4 0.07
14 6 0.10
15 49 0.82
16 1 0.02
ACGTcount: A:0.56, C:0.15, G:0.16, T:0.13
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:51833274 original size:30 final size:30
Alignment explanation
Indices: 51833232--51833317 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
51833222 AGATAACAAG
*
51833232 GAAA-CCA-AATAAAGAAATCCAAGATAGA
1 GAAATCCAGAATAAAGAAATCCAAGATAAA
*
51833260 GAAATCCAGAATAAAGAATTCC-AGAATAAA
1 GAAATCCAGAATAAAGAAATCCAAG-ATAAA
* * *
51833290 GAGATCCAGGATAAAGAAACCCAAGATA
1 GAAATCCAGAATAAAGAAATCCAAGATA
51833318 TGATACTATG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.08
29 5 0.10
30 37 0.77
31 2 0.04
ACGTcount: A:0.56, C:0.15, G:0.16, T:0.13
Consensus pattern (30 bp):
GAAATCCAGAATAAAGAAATCCAAGATAAA
Found at i:51836369 original size:46 final size:46
Alignment explanation
Indices: 51836219--51836389 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
51836209 TGTAACCCAC
* * *
51836219 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * * *
51836265 CCATGAGTGAACTCAGACTCAACTCAATGAGTTCGGTGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTC-G-GAC-A-TTCGCAT
*
51836314 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51836357 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTT
51836390 TGGTTGCCCA
Statistics
Matches: 102, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 79 0.77
47 3 0.03
48 3 0.03
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51846215 original size:47 final size:47
Alignment explanation
Indices: 51846155--51846447 Score: 417
Period size: 47 Copynumber: 6.2 Consensus size: 47
51846145 CATACATATC
* * ** ** * *
51846155 TCACATTAGCCATTCGGCTTTCCCACATATATACACATCCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* * * *
51846202 TCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* * *
51846249 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCT
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* *
51846296 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
51846343 TCACATTGGCCATTCGGCC-TATCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
51846389 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
51846436 TCACATTCGGCC
1 TCACATT-GGCC
51846448 TTAAAACAAA
Statistics
Matches: 222, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
46 44 0.20
47 174 0.78
48 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
Found at i:51846227 original size:22 final size:22
Alignment explanation
Indices: 51846201--51846276 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
51846191 ATCCACGTTC
51846201 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
51846223 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
51846248 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
51846270 ATCACAT
1 ATCACAT
51846277 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:51846463 original size:93 final size:93
Alignment explanation
Indices: 51846178--51846463 Score: 315
Period size: 93 Copynumber: 3.1 Consensus size: 93
51846168 TCGGCTTTCC
** * * * ** *
51846178 CACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCA
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCA
* *** **
51846243 CATTTATCACATTGGCCATTCGGCCTTAT
66 CATTCATCACATTGGCCATT-AAACAAAT
* * * *
51846272 CACATATATGCATGTTCATATTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCA
*** **
51846337 CATTCATCACATTGGCCATTCGGCCTAT
66 CATTCATCACATTGGCCATTAAACAAAT
*
51846365 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCA
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCA
51846430 CATTCATCACATTCGGCC-TTAAAACAAAT
66 CATTCATCACATT-GGCCATT-AAACAAAT
51846459 -ACATA
1 CACATA
51846464 AACATTTCTA
Statistics
Matches: 166, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
93 85 0.51
94 81 0.49
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (93 bp):
CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCA
CATTCATCACATTGGCCATTAAACAAAT
Found at i:51853824 original size:59 final size:59
Alignment explanation
Indices: 51853732--51853852 Score: 242
Period size: 59 Copynumber: 2.1 Consensus size: 59
51853722 CTTAAGACAT
51853732 TACCCAACTCAAAATTTTGTCATGGGTTCAGCAAGGAACTTAAGAACTAACTCAAAATA
1 TACCCAACTCAAAATTTTGTCATGGGTTCAGCAAGGAACTTAAGAACTAACTCAAAATA
51853791 TACCCAACTCAAAATTTTGTCATGGGTTCAGCAAGGAACTTAAGAACTAACTCAAAATA
1 TACCCAACTCAAAATTTTGTCATGGGTTCAGCAAGGAACTTAAGAACTAACTCAAAATA
51853850 TAC
1 TAC
51853853 TAAAATTTCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (59 bp):
TACCCAACTCAAAATTTTGTCATGGGTTCAGCAAGGAACTTAAGAACTAACTCAAAATA
Found at i:51863442 original size:47 final size:47
Alignment explanation
Indices: 51863382--51863557 Score: 300
Period size: 47 Copynumber: 3.7 Consensus size: 47
51863372 TTAGGATTCT
* * *
51863382 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
51863429 ATGAGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51863476 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51863523 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51863558 TCCCGAAGGG
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
46 1 0.01
47 122 0.99
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51863732 original size:37 final size:37
Alignment explanation
Indices: 51863676--51863752 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
51863666 CTGAGCTCTA
* * *
51863676 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51863713 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51863750 AAG
1 AAG
51863753 GCTTCGTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51865764 original size:57 final size:58
Alignment explanation
Indices: 51865702--51865810 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
51865692 CAATTTCACA
* *
51865702 CACCTGTATCTGGCCCATTAAGCCCAAA-CATATTCATATGGCCCATTAGGCTCAAAT
1 CACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCTCAAAT
** * *
51865759 CACCTGTATATGGCCCATTCGGCCCAAATCACATTTATATGGCCCGTTAGGC
1 CACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGC
51865811 CCAGTCACAT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 25 0.56
58 20 0.44
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (58 bp):
CACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCTCAAAT
Found at i:51865777 original size:29 final size:29
Alignment explanation
Indices: 51865706--51865813 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
51865696 TTCACACACC
* * *
51865706 TGTATCTGGCCCATTAAGCCCAAA-CATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
51865734 T-TCATATGGCCCATTAGGCTCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
51865763 TGTATATGGCCCATTCGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
51865792 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
51865814 GTCACATTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
27 1 0.02
28 19 0.29
29 45 0.68
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:51866056 original size:8 final size:8
Alignment explanation
Indices: 51866045--51866083 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
51866035 ACTTTCAGCT
*
51866045 TTTCGGTA
1 TTTCGGCA
51866053 TTTCGGCA
1 TTTCGGCA
* *
51866061 TTTTGGCT
1 TTTCGGCA
51866069 TTTCGGCA
1 TTTCGGCA
51866077 TTTCGGC
1 TTTCGGC
51866084 TTTTGTCTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.08, C:0.21, G:0.26, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:51866072 original size:16 final size:16
Alignment explanation
Indices: 51866053--51866087 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51866043 CTTTTCGGTA
*
51866053 TTTCGGCATTTTGGCT
1 TTTCGGCATTTCGGCT
51866069 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCGGCT
51866085 TTT
1 TTT
51866088 GTCTATACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.20, G:0.23, T:0.51
Consensus pattern (16 bp):
TTTCGGCATTTCGGCT
Found at i:51866074 original size:24 final size:23
Alignment explanation
Indices: 51866042--51866088 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
51866032 TAAACTTTCA
*
51866042 GCTTTTCGGTATTTCGGCATTTTG
1 GCTTTTCGGCATTTCGGC-TTTTG
51866066 GCTTTTCGGCATTTCGGCTTTTG
1 GCTTTTCGGCATTTCGGCTTTTG
51866089 TCTATACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.06, C:0.19, G:0.26, T:0.49
Consensus pattern (23 bp):
GCTTTTCGGCATTTCGGCTTTTG
Found at i:51869915 original size:27 final size:27
Alignment explanation
Indices: 51869874--51869927 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
51869864 GGTATCAGAA
*
51869874 AAGGATTAATCGGGGTTGGAGGTTGTT
1 AAGGATTAATCGGGGGTGGAGGTTGTT
*
51869901 AAGGATTAATTGGGGGTGGAGGTTGTT
1 AAGGATTAATCGGGGGTGGAGGTTGTT
51869928 GTACAGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.02, G:0.43, T:0.33
Consensus pattern (27 bp):
AAGGATTAATCGGGGGTGGAGGTTGTT
Found at i:51873004 original size:29 final size:29
Alignment explanation
Indices: 51872964--51873037 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
51872954 GGCCCAGTCT
* * **
51872964 CATTTATATGGCCTATCAGGCCCAATTCA
1 CATTAATATGGCCCATCAGAACCAATTCA
*
51872993 CATTCATATGGCCCATCAGAACCAATTCA
1 CATTAATATGGCCCATCAGAACCAATTCA
*
51873022 TATTAATATGGCCCAT
1 CATTAATATGGCCCAT
51873038 TAAGCCCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (29 bp):
CATTAATATGGCCCATCAGAACCAATTCA
Found at i:51873046 original size:29 final size:29
Alignment explanation
Indices: 51872964--51873046 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 29
51872954 GGCCCAGTCT
* * * *
51872964 CATTTATATGGCCTATCAGGCCCAATTCA
1 CATTAATATGGCCCATTAAGCCCAATTCA
* * *
51872993 CATTCATATGGCCCA-TCAGAACCAATTCA
1 CATTAATATGGCCCATTAAG-CCCAATTCA
*
51873022 TATTAATATGGCCCATTAAGCCCAA
1 CATTAATATGGCCCATTAAGCCCAA
51873047 ATCCCCTTTA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 1 0.02
29 38 0.90
30 3 0.07
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (29 bp):
CATTAATATGGCCCATTAAGCCCAATTCA
Found at i:51874983 original size:43 final size:41
Alignment explanation
Indices: 51874914--51875027 Score: 112
Period size: 40 Copynumber: 2.8 Consensus size: 41
51874904 CATATATTGA
* *
51874914 ACAATGCCAAC-GTCCCAGA-TGTGGTCTTACATGCTATCTCA-T
1 ACAATGCCAACTGTCCCAGACAG-GGTCTTACATG-AAT-T-AGT
51874956 ATCAATGCC-ACTGTCCCAGACAGGGTCTTACATGAATTAGT
1 A-CAATGCCAACTGTCCCAGACAGGGTCTTACATGAATTAGT
* *
51874997 ACAATGCCTA-TGTCCCAGACATGGTCTTACA
1 ACAATGCCAACTGTCCCAGACAGGGTCTTACA
51875028 CGTAACCACA
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
40 28 0.44
41 4 0.06
42 5 0.08
43 26 0.41
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (41 bp):
ACAATGCCAACTGTCCCAGACAGGGTCTTACATGAATTAGT
Found at i:51875069 original size:45 final size:45
Alignment explanation
Indices: 51874998--51875130 Score: 160
Period size: 45 Copynumber: 3.0 Consensus size: 45
51874988 TGAATTAGTA
* * *
51874998 CAATGCCTATGTCCCAGACATGGTCTTACACGTAACCACATATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* * *
51875043 -AGATGCCAATGTCCCAGACATAGTCTTTCATGAAAACACATATAT
1 CA-ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* * * *
51875088 CAATGCCGATGTCCCAAACGTGGTCTTACATGAAAACACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATAT
51875131 CAAAATTGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 1 0.01
45 73 0.97
46 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (45 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
Found at i:51881038 original size:45 final size:45
Alignment explanation
Indices: 51880985--51881095 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
51880975 TATGTTTTTT
* *
51880985 GTGTAAGACCACGTCTAGGACGTTGGCATCA-ATATATGTGCTGTA-
1 GTGTAAGACCAAGTCTGGGACGTTGGCAT-AGATATATGTGCT-TAC
* * * *
51881030 GTTTAAGACCAAATTTGGGACGTTGGCATAGATATATGTGGTTAC
1 GTGTAAGACCAAGTCTGGGACGTTGGCATAGATATATGTGCTTAC
*
51881075 GTGTAAGACCATGTCTGGGAC
1 GTGTAAGACCAAGTCTGGGAC
51881096 ATCGGTATCG
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 3 0.06
45 51 0.94
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCAAGTCTGGGACGTTGGCATAGATATATGTGCTTAC
Found at i:51887398 original size:47 final size:47
Alignment explanation
Indices: 51887341--51887466 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 47
51887331 GCAAATAATA
* * * *
51887341 TTGATTTGGCTACAGGCCATGATATAGGTATTTTGAGAGGAGTTACC
1 TTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGTTACC
** * *
51887388 TTGATTTGGCTATGGGCCATGGTATAGGTACTCTGGGATAAGTTACC
1 TTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGTTACC
*
51887435 TTTATTTGGCTACAGGCCATGGTATAGGTACT
1 TTGATTTGGCTACAGGCCATGGTATAGGTACT
51887467 TATTGATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (47 bp):
TTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGTTACC
Found at i:51890669 original size:43 final size:41
Alignment explanation
Indices: 51890601--51890847 Score: 291
Period size: 41 Copynumber: 6.0 Consensus size: 41
51890591 GTTCACATAG
* *
51890601 TATAATACACCGG--CAGAGCCTGCTAGGCAATAAGCCTAA
1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA
* * *
51890640 TATAAAACACCAGCATATAAAGCCTGCTAGGCAATAAGCCTGA
1 TATAATACACCGGC--ACAAAGCCTGCTAGGCAATAAGCCTGA
* * *
51890683 TATAATACACCGGCACAAAGCTTGCTAGGCGATAAGCTTGA
1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA
* * * * *
51890724 TTTAATACACCGACACAAATCCTGCTGGGCAATAAGCATGA
1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA
* *
51890765 TTTAATACACCGGCACAAAGCCTGCTAGGCAATAAGCATGA
1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA
* * *
51890806 TTTAATACACCGGCACAAAGCCTGGTAGGTAATAAAGCCTGA
1 TATAATACACCGGCACAAAGCCTGCTAGGCAAT-AAGCCTGA
51890848 ATATCACTGA
Statistics
Matches: 179, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
39 11 0.06
41 126 0.70
42 7 0.04
43 35 0.20
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (41 bp):
TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA
Found at i:51895499 original size:16 final size:15
Alignment explanation
Indices: 51895480--51895510 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
51895470 GAAAAAAATT
51895480 AGAAAAATACAAAAAA
1 AGAAAAATA-AAAAAA
51895496 AGAAAAATAAAAAAA
1 AGAAAAATAAAAAAA
51895511 TTTATGTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.84, C:0.03, G:0.06, T:0.06
Consensus pattern (15 bp):
AGAAAAATAAAAAAA
Found at i:51907513 original size:15 final size:16
Alignment explanation
Indices: 51907490--51907521 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
51907480 TTTAATGCAT
51907490 ACTTAATTAAATGAAA
1 ACTTAATTAAATGAAA
51907506 ACTT-ATTAAATGAAA
1 ACTTAATTAAATGAAA
51907521 A
1 A
51907522 TAACACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (16 bp):
ACTTAATTAAATGAAA
Found at i:51920755 original size:37 final size:37
Alignment explanation
Indices: 51920694--51920773 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
51920684 CTTATTACGA
* * * *
51920694 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGAAAAAAATCTCCACACGAAGTCATCG
* *
51920731 AGTCTTACCCGAAAAAAATTTCCACACGTAGTCATCG
1 AGTCTTACCCGAAAAAAATCTCCACACGAAGTCATCG
*
51920768 GGTCTT
1 AGTCTT
51920774 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (37 bp):
AGTCTTACCCGAAAAAAATCTCCACACGAAGTCATCG
Found at i:51921115 original size:49 final size:47
Alignment explanation
Indices: 51920892--51921144 Score: 389
Period size: 47 Copynumber: 5.3 Consensus size: 47
51920882 CCCTTCGGGA
* * * * * * *
51920892 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51920939 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51920986 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51921033 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51921080 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51921129 CTTATCACATATATAC
1 CTTATCACATATATAC
51921145 TGTCTTGGCT
Statistics
Matches: 189, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 143 0.76
49 46 0.24
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51928129 original size:49 final size:50
Alignment explanation
Indices: 51928062--51928183 Score: 133
Period size: 50 Copynumber: 2.4 Consensus size: 50
51928052 GATGCCAAGT
51928062 CCAAGACATGGTCTTACACTGACTATCGA-A-ATCAAG-GCCGACGCCATGTC
1 CCAA-ACATGGTCTTACACTGACTATC-ACATATC-AGTGCCGACGCCATGTC
* * * *
51928112 CCAAACATGGTCTTACACTGGCTCTCACATATCTGTGCCGATGCCATGTC
1 CCAAACATGGTCTTACACTGACTATCACATATCAGTGCCGACGCCATGTC
* * *
51928162 GCAGACATGGTTTTACACTGAC
1 CCAAACATGGTCTTACACTGAC
51928184 ACATCTCATA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 1 0.02
49 22 0.36
50 38 0.62
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
CCAAACATGGTCTTACACTGACTATCACATATCAGTGCCGACGCCATGTC
Found at i:51928170 original size:50 final size:50
Alignment explanation
Indices: 51928004--51928181 Score: 181
Period size: 49 Copynumber: 3.6 Consensus size: 50
51927994 CGTGTAATAT
*
51928004 CGATGCCATCTCCCAGACATGGTCTTACACTGGCTCATC-C-ATCAAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAATCAAGTGC
* * * * *
51928051 AGATGCCAAGTCCAAGACATGGTCTTACACTGACTATCGA-AATCAAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACAATCAAGTGC
* * *
51928100 CGACGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATC-TGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACA-ATCAAGTGC
* *
51928150 CGATGCCATGTCGCAGACATGGTTTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
51928182 ACACATCTCA
Statistics
Matches: 105, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 2 0.02
47 30 0.29
48 7 0.07
49 33 0.31
50 33 0.31
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATCAAGTGC
Found at i:51928236 original size:46 final size:48
Alignment explanation
Indices: 51928106--51928236 Score: 137
Period size: 50 Copynumber: 2.8 Consensus size: 48
51928096 AGGCCGACGC
* * * * *
51928106 CATGTCCCAAACATGGTCTTACACTGGCTCTCACATATCTGTGCCGATGC
1 CATGTCGCAGACATGGTCTTACACTGGCT-T-ACATCTCTGAGCCGATGA
* *
51928156 CATGTCGCAGACATGGTTTTACACTGAC--ACATCTCAT-AGCCGAT-A
1 CATGTCGCAGACATGGTCTTACACTGGCTTACATCTC-TGAGCCGATGA
51928201 CATGTCGCAGACAT-GTCTTACACTGGCTTACATCTC
1 CATGTCGCAGACATGGTCTTACACTGGCTTACATCTC
51928237 GAGGCGGATT
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
44 11 0.16
45 14 0.20
46 19 0.28
47 1 0.01
50 24 0.35
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCGCAGACATGGTCTTACACTGGCTTACATCTCTGAGCCGATGA
Found at i:51928261 original size:46 final size:47
Alignment explanation
Indices: 51928106--51928270 Score: 126
Period size: 46 Copynumber: 3.5 Consensus size: 47
51928096 AGGCCGACGC
* * *
51928106 CATGTCCCAAACATGGTCTTACACTGGCTCTCACATATCTG-TGCCGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCT-T-ACATCTC-GAAGCCGAT-A
* * * *
51928156 CATGTCGCAGACATGGTTTTACACTGAC--ACATCTC-ATAGCCGATA
1 CATGTCCCAAACATGGTCTTACACTGGCTTACATCTCGA-AGCCGATA
* * * * *
51928201 CATGTCGCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCGGATT
1 CATGTCCCAAACATGGTCTTACACTGGCTTACATCTCGAAGCCGATA
*
51928247 CATGTCCCAAACAT-GTCTTTCACT
1 CATGTCCCAAACATGGTCTTACACT
51928271 AGCGCAAAAA
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.12
45 14 0.15
46 45 0.47
47 1 0.01
50 24 0.25
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAAACATGGTCTTACACTGGCTTACATCTCGAAGCCGATA
Found at i:51929982 original size:29 final size:29
Alignment explanation
Indices: 51929899--51929996 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 29
51929889 GTTGTATCTA
* *
51929899 GCCCATTAAGCCC-AATCATAT-TCATATG
1 GCCCATTAGGCCCAAATCACATGT-ATATG
* *
51929927 GCCCATTAGGCCCAAGTCACCTGTATATG
1 GCCCATTAGGCCCAAATCACATGTATATG
* * * *
51929956 GTCCATTAGGGCCAAATGACATTTATATG
1 GCCCATTAGGCCCAAATCACATGTATATG
*
51929985 GCCCGTTAGGCC
1 GCCCATTAGGCC
51929997 TAGTCACATT
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
28 12 0.22
29 42 0.76
30 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATGTATATG
Found at i:51930236 original size:16 final size:16
Alignment explanation
Indices: 51930212--51930262 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
51930202 GTAGCCAAAC
*
51930212 TTTTAGCTTTTC-AGCA
1 TTTTGGCTTTTCGA-CA
51930228 TTTTGGCTTTTCGACA
1 TTTTGGCTTTTCGACA
*
51930244 TTTTGGCATTTCGAC-
1 TTTTGGCTTTTCGACA
51930259 TTTT
1 TTTT
51930263 CTGATTCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
15 4 0.12
16 27 0.84
17 1 0.03
ACGTcount: A:0.14, C:0.18, G:0.16, T:0.53
Consensus pattern (16 bp):
TTTTGGCTTTTCGACA
Found at i:51937603 original size:28 final size:28
Alignment explanation
Indices: 51937571--51937685 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
51937561 TAGCTGTATT
* *
51937571 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
51937599 TGGCCCATTAGGCCCAAGTCACCTGT-ATA
1 TGGCCCATTAGGCCCAA-TCACAT-TCATA
* *
51937628 TGGCCCATTAGGCCCAAATAACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
51937657 TGGCCCGTTAGGCCGAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
51937685 T
1 T
51937686 TCATGCTTAC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 28 0.38
29 42 0.58
30 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:51942908 original size:41 final size:41
Alignment explanation
Indices: 51942851--51942952 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 41
51942841 TAAGTGCTAA
51942851 TACATAGCCGAAGCTATTAT-AATCTCACACACTAAGTGCCT
1 TACATAGCCGAAGCTATT-TCAATCTCACACACTAAGTGCCT
* ** *
51942892 TACATAGCTC-AAGCTATTTCATTCTTGCACACTAAGTGCCA
1 TACATAGC-CGAAGCTATTTCAATCTCACACACTAAGTGCCT
* * *
51942933 TATATAGTCGAATCTATTTC
1 TACATAGCCGAAGCTATTTC
51942953 GAACTGCACA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 2 0.04
41 48 0.94
42 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (41 bp):
TACATAGCCGAAGCTATTTCAATCTCACACACTAAGTGCCT
Found at i:51950431 original size:27 final size:27
Alignment explanation
Indices: 51950396--51950507 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
51950386 AGCATGGCTG
* *
51950396 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
51950422 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
51950450 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
51950477 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
51950504 CCAG
1 CCAG
51950508 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:51950487 original size:54 final size:54
Alignment explanation
Indices: 51950396--51950507 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
51950386 AGCATGGCTG
* * *
51950396 CCAGAACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
51950450 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
51950504 CCAG
1 CCAG
51950508 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:51958317 original size:28 final size:28
Alignment explanation
Indices: 51958269--51958373 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 28
51958259 CTGCCAGAAT
* *
51958269 AGATAA-TGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGATAC
*
51958296 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAATTGTGGCAGAGCCACCAGATAC
*
51958323 AGA-AATATGTGGCAGAGCCACTAGAT-C
1 AGATAAT-TGTGGCAGAGCCACCAGATAC
*
51958350 AGATAATTGTGGCATAGCCACCAG
1 AGATAATTGTGGCAGAGCCACCAG
51958374 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 3 0.04
27 46 0.69
28 18 0.27
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (28 bp):
AGATAATTGTGGCAGAGCCACCAGATAC
Found at i:51967148 original size:19 final size:19
Alignment explanation
Indices: 51967126--51967165 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51967116 TTAAACTTTT
* *
51967126 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
51967145 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
51967164 AT
1 AT
51967166 AAAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:51967674 original size:40 final size:40
Alignment explanation
Indices: 51967587--51967689 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
51967577 TACCTCATTC
* ** * * *
51967587 TCGCACAGTAAGTGCCATATATAGTCAAAGCTATTTCGAA
1 TCGCACACTAAGTGCCATATATAACCAAACCTATCTCAAA
* * *
51967627 TCTCACACTAAGTGTCATATATAACCGAACCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAACCAAACCTATCTCAAA
51967667 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
51967690 TATCTGAATC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAACCAAACCTATCTCAAA
Found at i:51974996 original size:79 final size:80
Alignment explanation
Indices: 51974827--51975011 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
51974817 GCTACTCGTT
* * *
51974827 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTACCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
51974891 GATTTAGTAACTGGCA
65 GATATAGTAACTAGCA
* * ***
51974907 CAAATTCCTTCGGG-CTTACCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTCGTCCG
1 CAAATGCCTTCGGGACTTACCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
51974970 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
*
51974987 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTACCCCGGA
51975012 CATCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.60
80 32 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTACCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:51975011 original size:40 final size:40
Alignment explanation
Indices: 51974808--51975011 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
51974798 CGGAATTTAA
** *
51974808 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51974848 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
51974888 CCGGATTTAGTAACTGGCACAAATTCCTTCGGG-CTTACC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51974927 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTCGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51974967 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51975007 CCGGA
1 CCGGA
51975012 CATCATTCAA
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 89 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51982950 original size:79 final size:82
Alignment explanation
Indices: 51982839--51983023 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51982829 GCTACTCGTT
* * *
51982839 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51982902 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
51982919 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51982982 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51982999 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51983024 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51983023 original size:40 final size:40
Alignment explanation
Indices: 51982820--51983023 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
51982810 CGGAATTTAA
** *
51982820 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51982860 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51982900 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51982939 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51982979 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51983019 CCGGA
1 CCGGA
51983024 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51985368 original size:28 final size:28
Alignment explanation
Indices: 51985328--51985383 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
51985318 GGTTTACAAG
*
51985328 AGTTTGGGGCATGGTTGCAATTTTCCAA
1 AGTTTAGGGCATGGTTGCAATTTTCCAA
51985356 AGTTTAGGGCATGGTTGCAATTTTCCAA
1 AGTTTAGGGCATGGTTGCAATTTTCCAA
51985384 GGTTGGTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (28 bp):
AGTTTAGGGCATGGTTGCAATTTTCCAA
Found at i:52007023 original size:34 final size:34
Alignment explanation
Indices: 52006985--52007064 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
52006975 TACTAAATTA
**
52006985 GGCTAAGGCCCACACTGATACTGGTACT-ATAATG
1 GGCTAAGGCCCACACTGATACTGCCACTGAT-ATG
* *
52007019 GGCTAGGGCCCACACTGATATTGCCACTGATATG
1 GGCTAAGGCCCACACTGATACTGCCACTGATATG
52007053 GGCTAAGGCCCA
1 GGCTAAGGCCCA
52007065 GACCGTTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 38 0.95
35 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (34 bp):
GGCTAAGGCCCACACTGATACTGCCACTGATATG
Found at i:52008143 original size:18 final size:18
Alignment explanation
Indices: 52008120--52008155 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
52008110 TAACATATAA
52008120 AAGTATATAACACATACC
1 AAGTATATAACACATACC
*
52008138 AAGTATATAATACATACC
1 AAGTATATAACACATACC
52008156 TGACCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (18 bp):
AAGTATATAACACATACC
Found at i:52008353 original size:39 final size:40
Alignment explanation
Indices: 52008291--52008477 Score: 222
Period size: 39 Copynumber: 4.7 Consensus size: 40
52008281 AAGCATGCGG
*
52008291 GACTTTAAGCCCGGATATAATACCAGCATAAA-GCCTGT-GA
1 GACTTT-AGCCCGGATATAATACCAGCACAAATGCCT-TCGA
* *
52008331 GACTTTAGCCTGGATATAATACCAGCATAAATGCCTTC-A
1 GACTTTAGCCCGGATATAATACCAGCACAAATGCCTTCGA
* *
52008370 GGAC-TTAGCCCGGATATAACACCAGCACAAATGCCTTCGG
1 -GACTTTAGCCCGGATATAATACCAGCACAAATGCCTTCGA
* *
52008410 GAC-ATAGCCCGGATATAACACCAGCACAAATGCCTTCGA
1 GACTTTAGCCCGGATATAATACCAGCACAAATGCCTTCGA
* * *
52008449 GACTTAAGTCCGGATATAATTCCAGCACA
1 GACTTTAGCCCGGATATAATACCAGCACA
52008478 TAGCCTGCAG
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
39 97 0.75
40 33 0.25
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (40 bp):
GACTTTAGCCCGGATATAATACCAGCACAAATGCCTTCGA
Found at i:52008507 original size:39 final size:39
Alignment explanation
Indices: 52008418--52008583 Score: 226
Period size: 39 Copynumber: 4.2 Consensus size: 39
52008408 GGGACATAGC
** * * *
52008418 CCGGATATAACACCAGCACAAATGCCTTCGAGA-CTTAAGT
1 CCGGATATAATTCCAGCACATA-GCCTGC-AGACCCTAAGT
52008458 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
* *
52008497 CCGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
* *
52008536 TCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
52008575 CCGGATATA
1 CCGGATATA
52008584 CATCAAATAT
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 3 0.03
39 93 0.81
40 19 0.17
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
Found at i:52012730 original size:40 final size:40
Alignment explanation
Indices: 52012665--52012886 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
52012655 TATTCGCATG
* *
52012665 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
52012705 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
52012745 ATATCTGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
52012785 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
52012825 ATATCCGGGCTCAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATT
*
52012865 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
52012887 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 14 0.09
40 144 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:52018737 original size:18 final size:18
Alignment explanation
Indices: 52018714--52018749 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
52018704 TAACATATAA
52018714 AAGTATATAATACATACC
1 AAGTATATAATACATACC
52018732 AAGTATATAATACATACC
1 AAGTATATAATACATACC
52018750 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:52018942 original size:39 final size:40
Alignment explanation
Indices: 52018880--52019079 Score: 246
Period size: 39 Copynumber: 5.1 Consensus size: 40
52018870 CCAGAAAGTA
*
52018880 TGCGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCC
1 TGCGGGACTTT-AGCCCGGATATAATACCAGCACAAATGCC
*
52018920 TGCGGGACTTTAGCCCGGATATAATACCAGCATAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
** * *
52018960 TTTGGGAC-TTAGCCTGGATATAACACCAGCACAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
* *
52018999 TTCGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
* * * * *
52019038 TACGGGACTTAAGTCCGGATATAATTCCAGCACATA-GCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
52019077 TGC
1 TGC
52019080 AGACCCTAAG
Statistics
Matches: 144, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 102 0.71
40 42 0.29
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (40 bp):
TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
Found at i:52019101 original size:39 final size:39
Alignment explanation
Indices: 52019047--52019138 Score: 148
Period size: 39 Copynumber: 2.4 Consensus size: 39
52019037 CTACGGGACT
52019047 TAAGTCCGGATATAATTCCAGCACATAGCCTGCAGACCC
1 TAAGTCCGGATATAATTCCAGCACATAGCCTGCAGACCC
* * *
52019086 TAAGTCCGGATATAATTCTAGGACATAGCCTGCGGACCC
1 TAAGTCCGGATATAATTCCAGCACATAGCCTGCAGACCC
*
52019125 TAAGTCCAGATATA
1 TAAGTCCGGATATA
52019139 CATCAAATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.23
Consensus pattern (39 bp):
TAAGTCCGGATATAATTCCAGCACATAGCCTGCAGACCC
Found at i:52025102 original size:93 final size:93
Alignment explanation
Indices: 52024992--52025162 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
52024982 GCCCCTAAGT
* *
52024992 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
52025057 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
52025085 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
52025150 CGAGTTCGGATGC
66 CGAGTTCGGATGC
52025163 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52025159 original size:46 final size:46
Alignment explanation
Indices: 52024987--52025159 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
52024977 AACCCGCCCC
* * *
52024987 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
52025033 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
52025081 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
52025126 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
52025160 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:52025615 original size:30 final size:30
Alignment explanation
Indices: 52025581--52025640 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
52025571 ATTTAATATG
52025581 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
* * *
52025611 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
52025641 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:52032331 original size:40 final size:40
Alignment explanation
Indices: 52032276--52032370 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
52032266 TATGTGCATA
*
52032276 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCTAAAG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
* *
52032316 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
*
52032356 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
52032371 GTTACATCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
Found at i:52034569 original size:45 final size:45
Alignment explanation
Indices: 52034505--52034595 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
52034495 ACCACTTCGG
52034505 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
1 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
*
52034550 TAAGGGGGAGGGGTTGTAGGACCTCTGACTCGACTTTCTTATACA
1 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
52034595 T
1 T
52034596 GCATATAGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (45 bp):
TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
Found at i:52036805 original size:93 final size:93
Alignment explanation
Indices: 52036676--52036847 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
52036666 GCCCATAAGT
* * ** *
52036676 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
52036741 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
*
52036769 GAACTCGGACTCAACTCAACGAGTTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
52036834 CAAGTTCGGATGCC
66 CAAGCTCGGATGCC
52036848 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:52036840 original size:46 final size:45
Alignment explanation
Indices: 52036668--52036843 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
52036658 TGTAACCCGC
* * *
52036668 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAC-CTCGCAT
* *
52036714 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CCTCGCAT
* *** *
52036760 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGAC-CTCGCAT
* * *
52036807 CCATAAGTGAACTCAGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
52036844 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 35 0.33
48 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTCGCAT
Found at i:52040973 original size:27 final size:27
Alignment explanation
Indices: 52040934--52041038 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
52040924 GGAAGCGTCA
*
52040934 TGGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCACAATTATCTGATT
52040961 TGGTGGCTCTGCCACATATT-TCTG-TT
1 TGGTGGCTCTGCCACA-ATTATCTGATT
* *
52040987 ATGGTGGCTCTGCCACGATTATCTGTATC
1 -TGGTGGCTCTGCCACAATTATCTG-ATT
* *
52041016 TGGTGACTCTGTCAC-ATTATCTG
1 TGGTGGCTCTGCCACAATTATCTG
52041039 TTCTGGCAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.07
27 46 0.68
28 16 0.24
29 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATT
Found at i:52041039 original size:54 final size:54
Alignment explanation
Indices: 52040933--52041040 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
52040923 AGGAAGCGTC
* * *
52040933 ATGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATTTCTGTT
1 ATGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
52040987 ATGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 ATGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
52041041 CTGGCAGCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 30 0.64
55 17 0.36
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (54 bp):
ATGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:52045776 original size:43 final size:43
Alignment explanation
Indices: 52045718--52045800 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
52045708 GAGATATGTG
* *
52045718 GCATCCAAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCAA
1 GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCAA
* *
52045761 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATGGATG
1 GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATGATGGATG
52045801 TGATTCATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCAA
Found at i:52045873 original size:51 final size:51
Alignment explanation
Indices: 52045762--52045861 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
52045752 TGGATGCAAG
* * * *
52045762 CATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATGGATGTGATTCATGTAA
1 CATCCTAGCTCGTTGAGAGATCCGAGTTCATGATGGATATGATTCATGTAA
*
52045813 CATCCTAGCTCGTTGAGAGATCCGAGTTCATTATGGATATG-TTACATGT
1 CATCCTAGCTCGTTGAGAGATCCGAGTTCATGATGGATATGATT-CATGT
52045862 TATGTGGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (51 bp):
CATCCTAGCTCGTTGAGAGATCCGAGTTCATGATGGATATGATTCATGTAA
Found at i:52049216 original size:49 final size:49
Alignment explanation
Indices: 52049156--52049387 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
52049146 CTAGTACGCA
* *
52049156 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * ** * *
52049205 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * * *
52049255 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGAACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* * *
52049306 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
52049355 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
52049388 TCACAATAGA
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 69 0.45
50 47 0.31
51 36 0.24
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:52055368 original size:51 final size:50
Alignment explanation
Indices: 52055202--52055431 Score: 238
Period size: 49 Copynumber: 4.6 Consensus size: 50
52055192 CTAGTACGCA
* * *
52055202 TAGTAGCTTGCACTTAGTACTACACATGCGA-CCAATTATCCG-GTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTAT-CGAGTACACG
* * * * *
52055251 TATTAGGCTGCACTTAGTACTACACACGTGACCTAACCATAT-GA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAA--TTATCGAGTACACG
* * ** *
52055301 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTATCGAGTAGGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAA-TTATCGAGTACACG
*
52055352 TAGTAGCCTGCACTTAGTACTACACATGTGAT-TAATTATCCG-GAACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTAT-CGAGTACACG
*
52055401 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
52055432 CCTCGCAATA
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
49 66 0.44
50 46 0.31
51 34 0.23
52 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTATCGAGTACACG
Found at i:52055420 original size:100 final size:99
Alignment explanation
Indices: 52055202--52055433 Score: 263
Period size: 100 Copynumber: 2.3 Consensus size: 99
52055192 CTAGTACGCA
* * * * *
52055202 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTATTAGGCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
52055267 GTACTACACACGTGACCTAACCATATGATACACG
66 GTACTACACACGTGACCTAACCATAGGATACACG
* * **
52055301 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTAT-CGAGTAGGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCG-GTACACATAGTAGCCTGCAC
* * ** *
52055365 TTAGTACTACACATGTGA-TTAATTATCCGGA-ACACG
63 TTAGTACTACACACGTGACCTAACCAT-AGGATACACG
*
52055401 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
52055434 TCGCAATAGA
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
99 29 0.26
100 44 0.40
101 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATAGGATACACG
Found at i:52057635 original size:23 final size:25
Alignment explanation
Indices: 52057603--52057660 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
52057593 TGGATAACTA
* * *
52057603 TATATTAGGAAATTCAAGCA-AGCC
1 TATATCAGGAAACTCAAGAATAGCC
*
52057627 -ATATCAGGAAGCTCAAGAATAGCC
1 TATATCAGGAAACTCAAGAATAGCC
52057651 TATATCAGGA
1 TATATCAGGA
52057661 CGCTCATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 15 0.54
24 4 0.14
25 9 0.32
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.22
Consensus pattern (25 bp):
TATATCAGGAAACTCAAGAATAGCC
Found at i:52057675 original size:25 final size:24
Alignment explanation
Indices: 52057623--52057675 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
52057613 AATTCAAGCA
*
52057623 AGCCATATCAGGAAGCTCAAGAAT
1 AGCCATATCAGGAAGCTCAAGAAG
*
52057647 AGCCTATATCAGGACGCTCATA-AAG
1 AGCC-ATATCAGGAAGCTCA-AGAAG
52057672 AGCC
1 AGCC
52057676 GTGTTTGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.16
25 20 0.80
26 1 0.04
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (24 bp):
AGCCATATCAGGAAGCTCAAGAAG
Found at i:52061397 original size:13 final size:13
Alignment explanation
Indices: 52061379--52061444 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
52061369 AGTTTGGCAA
52061379 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
52061392 TGCTTTTGACAAG
1 TGCTTTTGAAAAG
*
52061405 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
* *
52061418 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
52061431 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
52061444 T
1 T
52061445 TTGGTTTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 2 0.05
13 39 0.91
14 2 0.05
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:52061441 original size:26 final size:26
Alignment explanation
Indices: 52061371--52061444 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
52061361 TTAGGGCTAG
* *
52061371 TTTGGCAA-TGCTTTTGAAAAGTGCT
1 TTTGACAAGTGCTTTTGAAAAGTACT
*
52061396 TTTGACAAGTG-TTGTGGAAAAGTACT
1 TTTGACAAGTGCTT-TTGAAAAGTACT
*
52061422 TTTGAGAAGTGCTTTTGAAAAGT
1 TTTGACAAGTGCTTTTGAAAAGT
52061445 TTGGTTTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 9 0.22
26 30 0.73
27 2 0.05
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (26 bp):
TTTGACAAGTGCTTTTGAAAAGTACT
Found at i:52069201 original size:25 final size:25
Alignment explanation
Indices: 52069173--52069222 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
52069163 CTCTCAACCA
52069173 CTCAATTCAAAGTCCA-TTCAAACAC
1 CTCAATTCAAA-TCCACTTCAAACAC
**
52069198 CTCAATTTTAATCCACTTCAAACAC
1 CTCAATTCAAATCCACTTCAAACAC
52069223 TTCCACAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.38, C:0.32, G:0.02, T:0.28
Consensus pattern (25 bp):
CTCAATTCAAATCCACTTCAAACAC
Found at i:52075905 original size:47 final size:47
Alignment explanation
Indices: 52075842--52075952 Score: 213
Period size: 47 Copynumber: 2.4 Consensus size: 47
52075832 GAAATGATAG
*
52075842 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
52075889 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
52075936 TAAGGCCTAATAGCCGA
1 TAAGGCCTAATAGCCGA
52075953 AGGGCATTTG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:52078002 original size:43 final size:43
Alignment explanation
Indices: 52077954--52078056 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
52077944 TTGGTTTTCA
52077954 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
52077997 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
52078040 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
52078057 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:52078073 original size:29 final size:29
Alignment explanation
Indices: 52078038--52078111 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
52078028 GTTGTGAGAT
* *
52078038 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
52078067 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
52078096 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52078112 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:52078545 original size:40 final size:40
Alignment explanation
Indices: 52078422--52078617 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
52078412 TCGAATGATG
** *
52078422 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
52078462 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
52078502 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
52078542 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
52078582 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
52078618 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:52078558 original size:80 final size:81
Alignment explanation
Indices: 52078422--52078618 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
52078412 TCGAATGATG
**
52078422 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
52078484 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
52078502 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
52078566 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
52078582 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
52078619 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:52082056 original size:25 final size:25
Alignment explanation
Indices: 52082028--52082104 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
52082018 TAATGGCCGA
52082028 TGTGATGAATGTGAAAGTGTATATG
1 TGTGATGAATGTGAAAGTGTATATG
* *** ***
52082053 TGTGAT-AAGGCCTAA-TGCCGA--
1 TGTGATGAATGTGAAAGTGTATATG
52082074 TGTGATGAATGTGAAAGTGTATATG
1 TGTGATGAATGTGAAAGTGTATATG
52082099 TGTGAT
1 TGTGAT
52082105 AAGGCCTAAT
Statistics
Matches: 34, Mismatches: 14, Indels: 8
0.61 0.25 0.14
Matches are distributed among these distances:
21 6 0.18
22 5 0.15
23 6 0.18
24 5 0.15
25 12 0.35
ACGTcount: A:0.30, C:0.05, G:0.31, T:0.34
Consensus pattern (25 bp):
TGTGATGAATGTGAAAGTGTATATG
Found at i:52082368 original size:46 final size:47
Alignment explanation
Indices: 52082011--52082387 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
52082001 GAAATGATAG
*
52082011 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
52082058 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
52082104 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
52082150 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
52082197 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
52082244 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
52082291 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
52082338 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
52082384 TAAG
1 TAAG
52082388 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 128 0.41
47 186 0.59
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:52087188 original size:40 final size:40
Alignment explanation
Indices: 52087109--52087320 Score: 261
Period size: 40 Copynumber: 5.3 Consensus size: 40
52087099 GATAACTGGA
* * *
52087109 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTTGCTATATCCGGG
* * * * *
52087149 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATACCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTTG-CTATATCCGGG
52087189 CTAAGACCCGAAGGCATTTGTG-TGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCT-AGTTGCTATATCCGGG
* *
52087229 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGC
1 CTAAGACCCGAAGGCATTTGTGCTAGTTGCTATATCCGGG
* *
52087269 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCTAGTTGCTATATCCGGG
52087308 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
52087321 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 15 0.10
40 132 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCTAGTTGCTATATCCGGG
Found at i:52087555 original size:31 final size:31
Alignment explanation
Indices: 52087520--52087581 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
52087510 TTGAAGCGTG
52087520 AAGTAAGTATGATTATGAGAATGTGCATATA
1 AAGTAAGTATGATTATGAGAATGTGCATATA
52087551 AAGTAAGTATGATTATGAGAATGTGCATATA
1 AAGTAAGTATGATTATGAGAATGTGCATATA
52087582 TGATGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (31 bp):
AAGTAAGTATGATTATGAGAATGTGCATATA
Found at i:52087619 original size:22 final size:22
Alignment explanation
Indices: 52087579--52087620 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
52087569 GAATGTGCAT
*
52087579 ATATGATGTTATTCATTTAGCC
1 ATATGATGTTATACATTTAGCC
52087601 ATATGAATGTTATAC-TTTAG
1 ATATG-ATGTTATACATTTAG
52087621 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATGATGTTATACATTTAGCC
Found at i:52090557 original size:47 final size:49
Alignment explanation
Indices: 52090486--52090702 Score: 197
Period size: 47 Copynumber: 4.6 Consensus size: 49
52090476 TGGGTAAAGT
* * *
52090486 GCCGATGCCATGTCCCAAAAATGGTCTTACACTGGATCAT-ATCTCAA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAAG
* *
52090533 GTCGATGCCATGTCCCAGACATGGTCTTACACTA-A-CTATCATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATC-ATCATCTC-AAG
* * *
52090581 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTA-CGTCTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAAG
* * * * * *
52090627 GCCGATG-TATGT-TCACACAT-GTCTTACACTAGCTC-TCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAAG
*
52090672 GTCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
52090703 TTGATTCTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
45 36 0.26
46 34 0.24
47 56 0.40
48 15 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAAG
Found at i:52094491 original size:25 final size:25
Alignment explanation
Indices: 52094463--52094541 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
52094453 CGAATGGCCA
52094463 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
52094488 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
52094510 ATGTGATGAATATGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
52094535 ATGTGAT
1 ATGTGAT
52094542 AAAGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 9 0.22
25 15 0.38
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:52094506 original size:47 final size:47
Alignment explanation
Indices: 52094437--52094562 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
52094427 TTTTATGTGT
* *
52094437 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
52094484 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
* *
52094531 ATATATGTGATAAAGCCGAATGGTCAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
52094563 AATATATATA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:52094516 original size:22 final size:22
Alignment explanation
Indices: 52094445--52094516 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
52094435 GTATATATGA
52094445 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
52094467 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
52094492 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
52094514 GAT
1 GAT
52094517 GAATATGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:52094643 original size:48 final size:48
Alignment explanation
Indices: 52094532--52094670 Score: 181
Period size: 48 Copynumber: 2.8 Consensus size: 48
52094522 TGAACATGCA
* * *
52094532 TATATGTGATAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGTG--A-A-ATATGTATGAGATATG
*
52094584 TATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
*
52094632 TATATGTGGTAAAGCCGAATGGCTCGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
52094671 GGCGAGGTGC
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
48 52 0.65
49 1 0.01
50 1 0.01
52 25 0.31
53 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:52094867 original size:37 final size:37
Alignment explanation
Indices: 52094817--52094888 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
52094807 GGAAATATAT
*
52094817 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
52094854 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
52094889 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:52100766 original size:40 final size:40
Alignment explanation
Indices: 52100692--52100912 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
52100682 AACCCAAGTA
* *
52100692 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* * *
52100731 CCTTCGGGTCTTAGCCTGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
* *
52100771 CCTTCGGGATTTAGCCCGGATATAG-CAACTTGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* * *
52100811 CCTTCGGAACTTAGCTCAGG-TATAGTCAATAGCAC-AACTG
1 CCTTCGGGACTTAGC-CCGGATATAGTCACTAGCACAAAC-G
* *
52100851 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
52100890 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
52100913 CATCCTTATA
Statistics
Matches: 155, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
39 43 0.28
40 107 0.69
41 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
Found at i:52100824 original size:80 final size:80
Alignment explanation
Indices: 52100692--52100912 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 80
52100682 AACCCAAGTA
* * *
52100692 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAACGCCTTCGGGTCTTAGCCTGGATATAG
1 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAGCCAGGATATAG
*
52100756 TCACTAGCACAAAAG
66 TCAATAGCACAAAAG
* *
52100771 CCTTCGGGATTTAGCCCGGATATAGCAACTTGCACAAACGCCTTCGGAACTTAGCTCAGG-TATA
1 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAGC-CAGGATATA
**
52100835 GTCAATAGCACAACTG
65 GTCAATAGCACAAAAG
* * * *
52100851 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATTTAGCCCGGATATAG-CAACTAGCACAAACGCCTTCGGGACTTAGCCAGGATAT
52100913 CATCCTTATA
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.02
79 33 0.26
80 85 0.68
81 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAGCCAGGATATAG
TCAATAGCACAAAAG
Found at i:52109778 original size:47 final size:47
Alignment explanation
Indices: 52109709--52109915 Score: 219
Period size: 47 Copynumber: 4.4 Consensus size: 47
52109699 GTAAGGTGCA
*
52109709 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGCC
* * *
52109756 GATGCCATGTCCCAGAAATGGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGCC
* * * *
52109804 AATG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCAAGGCT
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-GCC
* * *
52109850 GATG-CATGTCCTAGACATGTCTTACACTAGCTC-TCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-GCC
*
52109896 GATGCCATGTCCTAGACATG
1 GATGCCATGTCCCAGACATG
52109916 CTATTATAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.47
47 66 0.48
48 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGCC
Found at i:52109905 original size:93 final size:94
Alignment explanation
Indices: 52109709--52109915 Score: 244
Period size: 93 Copynumber: 2.2 Consensus size: 94
52109699 GTAAGGTGCA
* *
52109709 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAAA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGGCGATGCCATGTCCCAGAAA
*
52109774 TGGTCTTACACTGACTATCATCTCGTAGCC
65 TGGTCTTACACTGACTATCATCTCATAGCC
* * * * *
52109804 AATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCTGATG-CATGTCCTAGACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGC-GATGCCATGTCCCAGAAA
* *
52109867 T-GTCTTACACT-AGCTCTCGTCTCA-ATGCC
65 TGGTCTTACACTGA-CTATCATCTCATA-GCC
*
52109896 GATGCCATGTCCTAGACATG
1 GATGCCATGTCCCAGACATG
52109916 CTATTATAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
91 2 0.02
92 24 0.25
93 49 0.51
94 18 0.19
95 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGCGATGCCATGTCCCAGAAAT
GGTCTTACACTGACTATCATCTCATAGCC
Found at i:52112574 original size:16 final size:16
Alignment explanation
Indices: 52112553--52112585 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
52112543 TAGTAAAGAT
52112553 ACAACACATTTCAAAC
1 ACAACACATTTCAAAC
52112569 ACAACACATTTCAAAC
1 ACAACACATTTCAAAC
52112585 A
1 A
52112586 TTCTTCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (16 bp):
ACAACACATTTCAAAC
Found at i:52114431 original size:24 final size:23
Alignment explanation
Indices: 52114395--52114441 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
52114385 TCTGGCATAT
52114395 AATAGGAAACTCATAAGAGCTTAA
1 AATAGGAAACTCATAA-AGCTTAA
* *
52114419 AATAGGAAGCTCATTAAGCTTAA
1 AATAGGAAACTCATAAAGCTTAA
52114442 CAGGTAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (23 bp):
AATAGGAAACTCATAAAGCTTAA
Found at i:52120846 original size:25 final size:25
Alignment explanation
Indices: 52120818--52120896 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
52120808 CTAATGGCCG
52120818 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
52120843 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
52120865 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
52120890 ATGTGAT
1 ATGTGAT
52120897 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Done.