Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 167 of 295
Found at i:57166536 original size:19 final size:20
Alignment explanation
Indices: 57166512--57166549 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57166502 GGTACCACCA
57166512 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
57166531 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57166550 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:57166937 original size:46 final size:45
Alignment explanation
Indices: 57166778--57166946 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 45
57166768 CGCCCCTAAG
* * * *
57166778 TGAACTCGGACTTAACTCAACGAGCTCGGGCGTTTGCATCCATCAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AA
* * * *
57166824 TGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAA
*
57166871 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
57166916 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
57166947 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.54
47 29 0.28
48 1 0.01
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:57166942 original size:93 final size:93
Alignment explanation
Indices: 57166779--57166949 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
57166769 GCCCCTAAGT
* * *
57166779 GAACTCGGACTTAACTCAACGAGCTCGGGCGTTTGCATCCATCAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATCAATGAACTCGGACTCAACTCAA
*
57166844 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57166872 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATCAA-TGAACTCGGACTCAACTCA
57166936 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
57166950 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATCAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57166965 original size:46 final size:46
Alignment explanation
Indices: 57166776--57166965 Score: 149
Period size: 46 Copynumber: 4.1 Consensus size: 46
57166766 CCCGCCCCTA
* * ** * *
57166776 AGTGAACTCGGACTTAACTCAACGAGCTCGGGCGTTTGCATCCATC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTGCAACCATCT
* * **
57166822 AATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CT-GCAACCATCT
* * * *
57166869 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTGCAACCATCT
57166915 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCT-CAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTGCAACCAT-CT
57166961 AGTGA
1 AGTGA
57166966 CATGTCACTT
Statistics
Matches: 112, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
44 8 0.07
45 2 0.02
46 67 0.60
47 32 0.29
48 1 0.01
49 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTGCAACCATCT
Found at i:57173494 original size:17 final size:17
Alignment explanation
Indices: 57173472--57173505 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
57173462 TTCCCATTTT
57173472 AGTTGTTTTCTCAACTA
1 AGTTGTTTTCTCAACTA
57173489 AGTTGTTTTCTCAACTA
1 AGTTGTTTTCTCAACTA
57173506 CGTTCTATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (17 bp):
AGTTGTTTTCTCAACTA
Found at i:57175947 original size:39 final size:39
Alignment explanation
Indices: 57175902--57175983 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
57175892 CTTATTAACA
57175902 TATAATTGATTAATACTCTAACACTTAATATAACATCCC
1 TATAATTGATTAATACTCTAACACTTAATATAACATCCC
57175941 TATAATTGATTAATACTCTAACACTTAATATAACATCCC
1 TATAATTGATTAATACTCTAACACTTAATATAACATCCC
57175980 TATA
1 TATA
57175984 CTGTAACACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (39 bp):
TATAATTGATTAATACTCTAACACTTAATATAACATCCC
Found at i:57181407 original size:54 final size:54
Alignment explanation
Indices: 57181223--57181416 Score: 219
Period size: 55 Copynumber: 3.6 Consensus size: 54
57181213 AACATACCAT
* * * * *
57181223 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAA
* * ** *
57181276 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAG-AACTCATCAA
* * * * * *
57181331 TGCCATGTCGTGACAGGGTCTTACATGATTTCTTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAA
*
57181385 TGCCATGCCTTGGCATGGTCTTACATGATATC
1 TGCCATGCCTTGACATGGTCTTACATGATATC
57181417 CTTATCCTAC
Statistics
Matches: 115, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 35 0.30
54 37 0.32
55 43 0.37
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAA
Found at i:57181516 original size:47 final size:47
Alignment explanation
Indices: 57181398--57181519 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
57181388 CATGCCTTGG
* * * *
57181398 CATGGTCTTACATGATATCCTTATCCTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
* *
57181445 CATGGTCTTACATGGTATCATTGTCTTACCAAATTCCATGGTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
57181492 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
57181520 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
Found at i:57186177 original size:37 final size:37
Alignment explanation
Indices: 57186136--57186208 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
57186126 TATTCACAAT
*
57186136 TTATTCATTATCACATAAACATTATGAACCATTATTA
1 TTATTCATTATCACATAAACATCATGAACCATTATTA
57186173 TTATTCATTATCACATAAACATCATGAACCATTATT
1 TTATTCATTATCACATAAACATCATGAACCATTATT
57186209 CTTACATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.40
Consensus pattern (37 bp):
TTATTCATTATCACATAAACATCATGAACCATTATTA
Found at i:57187912 original size:55 final size:54
Alignment explanation
Indices: 57187783--57187971 Score: 213
Period size: 55 Copynumber: 3.5 Consensus size: 54
57187773 AACATACCAT
* * * *
57187783 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTT-TTGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
57187836 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * *
57187891 TGTCATGTCTTGACATGGTCTTACATGATTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
57187945 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
57187972 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 35 0.31
55 40 0.35
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:57187968 original size:54 final size:54
Alignment explanation
Indices: 57187783--57187979 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
57187773 AACATACCAT
* * * * * *
57187783 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTT-TTGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
* * **
57187836 TACCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTT-CCTTATAG-AACTCATCAA
* * * *
57187891 TGTCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
*
57187945 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
57187980 ATCTTACCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 42 0.35
55 40 0.33
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
Found at i:57188013 original size:47 final size:47
Alignment explanation
Indices: 57187958--57188079 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
57187948 CATGCCTTGG
* *
57187958 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
57188005 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
57188052 CATGGTCTTACAGGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
57188080 GTGTTAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:57188121 original size:142 final size:140
Alignment explanation
Indices: 57187959--57188213 Score: 309
Period size: 142 Copynumber: 1.8 Consensus size: 140
57187949 ATGCCTTGGC
* * * *
57187959 ATGGTCTTACATGATATCCTT-ATC-TTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTA
1 ATGGTCTTACATGATATCCTTAATCAAT-CCAAATGCCATG-TCCAAACATAGTCTTACACGGGA
*
57188022 TCCTTGTCTTACCAAATTCCATGTTCCAAACATGGTCTTACAGGGTATCCTTGTCTTAGTGTTAA
64 TCCTTGCCTTACC-AATTCCATG-TCCAAACATGGTCTTACAGGGTATCCTTGTCTTAGTGTTAA
57188087 TGCCATATCTTGAT
127 TGCCATATCTTGAT
* * * ***
57188101 ATGGTCTTACATGGA-GTCCTTAATCAATGCTAATGCCATGTCTTGACATAGTCTTACACGGGAT
1 ATGGTCTTACAT-GATATCCTTAATCAATCCAAATGCCATGTCCAAACATAGTCTTACACGGGAT
*** *
57188165 CCTTGCCTTACCAATTCCATGTCTTGACATGGTCTTACATGGTATCCTT
65 CCTTGCCTTACCAATTCCATGTCCAAACATGGTCTTACAGGGTATCCTT
57188214 AACCGTCAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
140 24 0.25
141 9 0.09
142 46 0.48
143 15 0.16
144 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.36
Consensus pattern (140 bp):
ATGGTCTTACATGATATCCTTAATCAATCCAAATGCCATGTCCAAACATAGTCTTACACGGGATC
CTTGCCTTACCAATTCCATGTCCAAACATGGTCTTACAGGGTATCCTTGTCTTAGTGTTAATGCC
ATATCTTGAT
Found at i:57188267 original size:44 final size:44
Alignment explanation
Indices: 57188219--57188302 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
57188209 TCCTTAACCG
* *
57188219 TCAATTCATCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCATCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* *
57188263 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCATCCTTAAATGCCATGGTACAACCATGGACTTT
57188303 GAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (44 bp):
TCAATTCATCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:57191974 original size:27 final size:27
Alignment explanation
Indices: 57191944--57192006 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
57191934 AGATACAGAT
57191944 AGCCACCAGAACAGA-AATATATGGCAA
1 AGCCACCAGAACAGATAAT-TATGGCAA
* * *
57191971 AGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGAACAGATAATTATGGCAA
57191998 AGCCACCAG
1 AGCCACCAG
57192007 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.14
Consensus pattern (27 bp):
AGCCACCAGAACAGATAATTATGGCAA
Found at i:57195905 original size:20 final size:20
Alignment explanation
Indices: 57195856--57195905 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
57195846 GCTTGGATGA
* *
57195856 GATTGCACTTCGGTGCCTCT
1 GATTGCACATCAGTGCCTCT
*
57195876 GTTTGCACATCAGTGCCTCT
1 GATTGCACATCAGTGCCTCT
*
57195896 GATTGTACAT
1 GATTGCACAT
57195906 TTGTACCTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.36
Consensus pattern (20 bp):
GATTGCACATCAGTGCCTCT
Found at i:57201374 original size:6 final size:6
Alignment explanation
Indices: 57201365--57201398 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
57201355 TCAAAATGAT
* *
57201365 AATGGA AATGGA AATGGA AATGAA AATAGA AATG
1 AATGGA AATGGA AATGGA AATGGA AATGGA AATG
57201399 ATTCATTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (6 bp):
AATGGA
Found at i:57201380 original size:12 final size:12
Alignment explanation
Indices: 57201358--57201399 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
57201348 TAGGTTTTCA
*
57201358 AAATGATAATGG
1 AAATGAAAATGG
*
57201370 AAATGGAAATGG
1 AAATGAAAATGG
*
57201382 AAATGAAAATAG
1 AAATGAAAATGG
57201394 AAATGA
1 AAATGA
57201400 TTCATTTGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:57203174 original size:13 final size:13
Alignment explanation
Indices: 57203156--57203180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57203146 ACACACGGCC
57203156 ATACAACATGCCT
1 ATACAACATGCCT
57203169 ATACAACATGCC
1 ATACAACATGCC
57203181 CGTGTCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.08, T:0.20
Consensus pattern (13 bp):
ATACAACATGCCT
Found at i:57208321 original size:29 final size:29
Alignment explanation
Indices: 57208289--57208477 Score: 179
Period size: 29 Copynumber: 6.6 Consensus size: 29
57208279 AAAGCCATCT
*
57208289 TTTTAACAGAGATGGCCACAAAGGCTTCC
1 TTTTAACAGAGATAGCCACAAAGGCTTCC
* * * *
57208318 TTTTAATAAAGATTGCCACAAAGGCTTTC
1 TTTTAACAGAGATAGCCACAAAGGCTTCC
** * *
57208347 TTTTAGTAGAAATAGCCACAAAGACTTCC
1 TTTTAACAGAGATAGCCACAAAGGCTTCC
* *
57208376 TTTTAACGGAGATAGCCACAAAGGTTTCC
1 TTTTAACAGAGATAGCCACAAAGGCTTCC
** * *
57208405 TTTTAATTGAGATAGCCAAAAAGTCTTCC
1 TTTTAACAGAGATAGCCACAAAGGCTTCC
* * *
57208434 TTTAAACAAATATAGCCACAAAGG-TAT-C
1 TTTTAACAGAGATAGCCACAAAGGCT-TCC
57208462 TTTT--CAGAGATAGCCA
1 TTTTAACAGAGATAGCCA
57208478 AAGTGGCTCA
Statistics
Matches: 128, Mismatches: 31, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
26 10 0.08
28 5 0.04
29 113 0.88
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (29 bp):
TTTTAACAGAGATAGCCACAAAGGCTTCC
Found at i:57208449 original size:87 final size:87
Alignment explanation
Indices: 57208289--57208456 Score: 212
Period size: 87 Copynumber: 1.9 Consensus size: 87
57208279 AAAGCCATCT
* * * * * **
57208289 TTTTAACAGAGATGGCCACAAAGGCTTCCTTTTAATAAAGATTGCCACAAAGGCTTTCTTTTAGT
1 TTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAATAAAGATAGCCAAAAAGGCTTCCTTTAAAC
57208354 AGAAATAGCCACAAAGACTTCC
66 AGAAATAGCCACAAAGACTTCC
* * ** *
57208376 TTTTAACGGAGATAGCCACAAAGGTTTCCTTTTAATTGAGATAGCCAAAAAGTCTTCCTTTAAAC
1 TTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAATAAAGATAGCCAAAAAGGCTTCCTTTAAAC
57208441 A-AATATAGCCACAAAG
66 AGAA-ATAGCCACAAAG
57208457 GTATCTTTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 2 0.03
87 66 0.97
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (87 bp):
TTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAATAAAGATAGCCAAAAAGGCTTCCTTTAAAC
AGAAATAGCCACAAAGACTTCC
Found at i:57219532 original size:15 final size:15
Alignment explanation
Indices: 57219512--57219541 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57219502 ATTGAGAAGA
57219512 ATTTATTCTGATTGT
1 ATTTATTCTGATTGT
57219527 ATTTATTCTGATTGT
1 ATTTATTCTGATTGT
57219542 GAGTTGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (15 bp):
ATTTATTCTGATTGT
Found at i:57236205 original size:18 final size:17
Alignment explanation
Indices: 57236184--57236217 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
57236174 TTTTTCCAAC
57236184 TCTCTTTGCTTTTCTTTT
1 TCTCTTT-CTTTTCTTTT
*
57236202 TCTCTTTTTTTTCTTT
1 TCTCTTTCTTTTCTTT
57236218 GAGAGTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (17 bp):
TCTCTTTCTTTTCTTTT
Found at i:57238712 original size:25 final size:25
Alignment explanation
Indices: 57238650--57238717 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
57238640 TACTGAATGT
57238650 AGCTCGTGAGAGCTTACCGATTCTC
1 AGCTCGTGAGAGCTTACCGATTCTC
* *
57238675 AGCTC-TTATGAGCTTACTGATT-TAC
1 AGCTCGTGA-GAGCTTACCGATTCT-C
*
57238700 AGCTCGTGAGAGCATACC
1 AGCTCGTGAGAGCTTACC
57238718 AGTTCATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
24 3 0.09
25 30 0.86
26 2 0.06
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTCGTGAGAGCTTACCGATTCTC
Found at i:57239861 original size:20 final size:20
Alignment explanation
Indices: 57239825--57239863 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57239815 GCCACAAGGT
57239825 TTGGCTTGTGTTATGGTATC
1 TTGGCTTGTGTTATGGTATC
*
57239845 TTGG-TTGTGATTTTGGTAT
1 TTGGCTTGTG-TTATGGTAT
57239864 TTTGAATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.10, C:0.05, G:0.31, T:0.54
Consensus pattern (20 bp):
TTGGCTTGTGTTATGGTATC
Found at i:57242041 original size:46 final size:46
Alignment explanation
Indices: 57241984--57242160 Score: 284
Period size: 46 Copynumber: 3.8 Consensus size: 46
57241974 GATATTTGGG
57241984 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
* **
57242030 CATCTGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
*
57242076 CGTCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
* *
57242122 C-GCTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CATC-CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
57242161 GCGGGTTACA
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 120 0.99
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
Found at i:57242618 original size:27 final size:27
Alignment explanation
Indices: 57242580--57242728 Score: 210
Period size: 27 Copynumber: 5.5 Consensus size: 27
57242570 CGCTCACACT
57242580 ATTACC-AGAATACCCCTATAGGGTAGA
1 ATTACCGA-AATACCCCTATAGGGTAGA
* *
57242607 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACCGAAATACCCCTATAGGGTAGA
* *
57242634 ATTACCGAAATACCCCTTTAAGGTAGA
1 ATTACCGAAATACCCCTATAGGGTAGA
*
57242661 ATTACCGAAATACCCCTGTAGGGTAGA
1 ATTACCGAAATACCCCTATAGGGTAGA
*
57242688 ATTACCGAAATACCCCTATAGGGTGGA
1 ATTACCGAAATACCCCTATAGGGTAGA
* *
57242715 GTTACCGAGATACC
1 ATTACCGAAATACC
57242729 TTGTGAGGAA
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 109 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (27 bp):
ATTACCGAAATACCCCTATAGGGTAGA
Found at i:57243225 original size:22 final size:22
Alignment explanation
Indices: 57243173--57243237 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
57243163 TTAAAGCCTT
* *
57243173 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
57243195 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
57243217 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
57243238 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:57243391 original size:25 final size:26
Alignment explanation
Indices: 57243363--57243417 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
57243353 TGCCACGTAT
* *
57243363 TCTGTTAAG-TGGCTTTGCCACATTA
1 TCTGTTAAGATGGCTCTGCCACAATA
**
57243388 TCTGTTCTGATGGCTCTGCCACAATA
1 TCTGTTAAGATGGCTCTGCCACAATA
57243414 TCTG
1 TCTG
57243418 GATCTGGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
TCTGTTAAGATGGCTCTGCCACAATA
Found at i:57243408 original size:26 final size:26
Alignment explanation
Indices: 57243372--57243446 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
57243362 TTCTGTTAAG
* * *
57243372 TGGCTTTGCCACATTATCTGTTCTGA
1 TGGCTCTGCCACAATATCTGATCTGA
*
57243398 TGGCTCTGCCACAATATCTGGATCTGG
1 TGGCTCTGCCACAATATCT-GATCTGA
* *
57243425 TGACTCTGTCACAATATCTGAT
1 TGGCTCTGCCACAATATCTGAT
57243447 AACTGAGCAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
TGGCTCTGCCACAATATCTGATCTGA
Found at i:57243611 original size:6 final size:6
Alignment explanation
Indices: 57243580--57243687 Score: 89
Period size: 6 Copynumber: 17.5 Consensus size: 6
57243570 TTGCATTCAC
* * *
57243580 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
57243629 -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
57243679 ATTCTG ATT
1 ATTCTG ATT
57243688 GTAGTTCTGA
Statistics
Matches: 83, Mismatches: 8, Indels: 22
0.73 0.07 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.77
7 9 0.11
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:57243615 original size:31 final size:31
Alignment explanation
Indices: 57243580--57243687 Score: 171
Period size: 31 Copynumber: 3.5 Consensus size: 31
57243570 TTGCATTCAC
*
57243580 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
57243611 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
57243642 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
57243673 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
57243688 GTAGTTCTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:57243642 original size:19 final size:19
Alignment explanation
Indices: 57243583--57243647 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
57243573 CATTCACATT
*
57243583 CTGATTTTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
*
57243602 CTGATACTGATTCTG--A-
1 CTGATATTGATTCTGTTAC
57243618 -T--T-TTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
57243633 CTGATATTGATTCTG
1 CTGATATTGATTCTG
57243648 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.61
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
CTGATATTGATTCTGTTAC
Found at i:57245731 original size:27 final size:27
Alignment explanation
Indices: 57245701--57245762 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
57245691 GAAATAAGAT
57245701 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
57245728 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
57245755 AAAATTAC
1 AGAATTAC
57245763 TGAAATACCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:57245771 original size:27 final size:27
Alignment explanation
Indices: 57245714--57245907 Score: 158
Period size: 27 Copynumber: 7.2 Consensus size: 27
57245704 ATTACCATTT
* * ***
57245714 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* **
57245741 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * * *
57245768 TACCATTGGTTTACAAAATTACCCAAA
1 TACCCTCGATTTATAAAATTACCAAAA
**
57245795 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
57245822 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
57245849 CACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
57245876 TACCC-CTAGTTTATAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
57245903 TACCC
1 TACCC
57245908 CTGTAGGGTA
Statistics
Matches: 131, Mismatches: 33, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.02
27 129 0.98
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:57245840 original size:54 final size:54
Alignment explanation
Indices: 57245776--57245907 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 54
57245766 AATACCATTG
* *
57245776 GTTTACAAAATTACCCAAATACCCTCGATCAATAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCCTA
* * * * * **
57245830 GTTTGTAAAATTACTAAAACACCCTTGGTTTATAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCCTA
57245884 GTTTATAAAATTACCAAAATACCC
1 GTTTATAAAATTACCAAAATACCC
57245908 CTGTAGGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.28
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCCTA
Found at i:57245908 original size:27 final size:27
Alignment explanation
Indices: 57245776--57245936 Score: 164
Period size: 27 Copynumber: 6.0 Consensus size: 27
57245766 AATACCATTG
* * *
57245776 GTTTACAAAATTACCCAAATA-CCCTC
1 GTTTATAAAATTACCAAAATACCCCTA
**
57245802 GATCAATAAAATTACCAAAATACCCCTA
1 G-TTTATAAAATTACCAAAATACCCCTA
* * * * *
57245830 GTTTGTAAAATTACTAAAACACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTA
57245857 GTTTATAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCCTA
57245884 GTTTATAAAATTACCAAAATACCCCT-
1 GTTTATAAAATTACCAAAATACCCCTA
*** *
57245910 GTAGGGTAAAATTACCGAAATACCCCT
1 GT-TTATAAAATTACCAAAATACCCCT
57245937 GTAGGGTAGA
Statistics
Matches: 111, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.03
27 103 0.93
28 5 0.05
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCCTA
Found at i:57245919 original size:81 final size:80
Alignment explanation
Indices: 57245755--57246015 Score: 242
Period size: 81 Copynumber: 3.2 Consensus size: 80
57245745 CTCGATTTAC
** * * *
57245755 AAAATTACTGAAATACCATTGGTTTACAAAATTACCCAAATA-CCCTCGATCAATAAAATTACCA
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-G-TCAATAAAATTACCA
**
57245819 AAATACCCCTAGT-TTGT
64 AAATACCCCT-GTAGGGT
* * **
57245836 AAAATTACTAAAACACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GTCAATAAAATTACCAA
57245901 AATACCCCTGTAGGGT
65 AATACCCCTGTAGGGT
* * *** * ** *
57245917 AAAATTACCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTGT-AGGATAGAATTACC
1 AAAATTACCAAAATACCCTTGGT-TTATAAAATTACCAAAATACCCCTGTCA--ATAAAATTACC
57245980 AAAATACCCCTGTAGGGT
63 AAAATACCCCTGTAGGGT
*
57245998 AGAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
57246016 CTGTAGGGTG
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
80 6 0.04
81 140 0.93
82 5 0.03
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGTCAATAAAATTACCAAA
ATACCCCTGTAGGGT
Found at i:57245937 original size:27 final size:27
Alignment explanation
Indices: 57245808--57246033 Score: 224
Period size: 27 Copynumber: 8.4 Consensus size: 27
57245798 CCTCGATCAA
**
57245808 TAAAATTACCAAAATACCCCTAGT-TTG
1 TAAAATTACCAAAATACCCCT-GTAGGG
* * * ***
57245835 TAAAATTACTAAAACACCCTTGGT-TTA
1 TAAAATTACCAAAATACCCCT-GTAGGG
***
57245862 TAAAATTACCAAAATACCCCTAGT-TTA
1 TAAAATTACCAAAATACCCCT-GTAGGG
57245889 TAAAATTACCAAAATACCCCTGTAGGG
1 TAAAATTACCAAAATACCCCTGTAGGG
*
57245916 TAAAATTACCGAAATACCCCTGTAGGG
1 TAAAATTACCAAAATACCCCTGTAGGG
* ** *
57245943 TAGAATTACTGAAATACCCCTGTAGGA
1 TAAAATTACCAAAATACCCCTGTAGGG
*
57245970 TAGAATTACCAAAATACCCCTGTAGGG
1 TAAAATTACCAAAATACCCCTGTAGGG
*
57245997 TAGAATTACCAAAATACCCCTGTAGGG
1 TAAAATTACCAAAATACCCCTGTAGGG
**
57246024 TGGAATTACC
1 TAAAATTACC
57246034 GAGATACCTT
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 176 0.99
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGTAGGG
Found at i:57246016 original size:81 final size:81
Alignment explanation
Indices: 57245865--57246041 Score: 257
Period size: 81 Copynumber: 2.2 Consensus size: 81
57245855 TGGTTTATAA
* ** * *
57245865 AATTACCAAAATACCCCTAGT-TTATAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAA
1 AATTACCGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAA
57245929 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* *
57245946 AATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAA
1 AATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAA
*
57246011 TACCCCTGTAGGGTGG
66 TACCCCTGTAGGGTAG
*
57246027 AATTACCGAGATACC
1 AATTACCGAAATACC
57246042 TTGTGGGGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.02
81 83 0.98
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAA
TACCCCTGTAGGGTAG
Found at i:57246041 original size:27 final size:27
Alignment explanation
Indices: 57245865--57246033 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
57245855 TGGTTTATAA
*** *
57245865 AATTACCAAAATACCCCTAGT-TTATAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
*
57245892 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
*
57245919 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
57245946 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAG
57245973 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
57246000 AATTACCAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
57246027 AATTACC
1 AATTACC
57246034 GAGATACCTT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 2 0.02
27 128 0.98
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:57246221 original size:16 final size:16
Alignment explanation
Indices: 57246200--57246230 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57246190 CAAATATGGG
*
57246200 CATGACATTTTGCATA
1 CATGACATGTTGCATA
57246216 CATGACATGTTGCAT
1 CATGACATGTTGCAT
57246231 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:57246538 original size:22 final size:21
Alignment explanation
Indices: 57246486--57246550 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
57246476 TTAAAGCCTT
*
57246486 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGG-TTTGTGCCAAC
*
57246508 CT-ACATATGGTTCTGTGCCAAC
1 CTGA-TTATGGTT-TGTGCCAAC
*
57246530 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGG-TTTGTGCCAA
57246551 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:57246779 original size:27 final size:26
Alignment explanation
Indices: 57246719--57246783 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 26
57246709 AGTGGCTTTT
* *
57246719 CCACATTATCTGTTCTAGTGGCTCGG
1 CCACAATATCTGTTCTAGTGACTCGG
* *
57246745 CCACAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGT-TCTAGTGACTCGG
*
57246772 TCACAATATCTG
1 CCACAATATCTG
57246784 ATAACTAAGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 12 0.36
27 21 0.64
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (26 bp):
CCACAATATCTGTTCTAGTGACTCGG
Found at i:57246964 original size:31 final size:31
Alignment explanation
Indices: 57246926--57247018 Score: 114
Period size: 31 Copynumber: 3.0 Consensus size: 31
57246916 TCACATTTTG
57246926 ATTTTGATTCTGTTACCTGATACTGATTCTA
1 ATTTTGATTCTGTTACCTGATACTGATTCTA
* * *
57246957 ATTTTGATTTTGTTACCAGATACTGATTCTG
1 ATTTTGATTCTGTTACCTGATACTGATTCTA
* * * * *
57246988 ATTCTAATTCTATCACCTGATTCTGATTCTA
1 ATTTTGATTCTGTTACCTGATACTGATTCTA
57247019 GTTCTGATAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTTTGATTCTGTTACCTGATACTGATTCTA
Found at i:57255250 original size:27 final size:27
Alignment explanation
Indices: 57255226--57255281 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
57255216 AGAAAAGCTG
57255226 CCAATAACAGTAAATGTGGCAAAGCCA
1 CCAATAACAGTAAATGTGGCAAAGCCA
* ** *
57255253 CCAGTAACAGTAGTTGTGGCAGAG-CA
1 CCAATAACAGTAAATGTGGCAAAGCCA
57255279 CCA
1 CCA
57255282 GTATAGTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAATAACAGTAAATGTGGCAAAGCCA
Found at i:57259212 original size:17 final size:18
Alignment explanation
Indices: 57259190--57259223 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57259180 TCCTAGGCTA
57259190 TGTGGGC-CACACGGGCG
1 TGTGGGCTCACACGGGCG
*
57259207 TGTGGGCTCACATGGGC
1 TGTGGGCTCACACGGGC
57259224 CACGTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCG
Found at i:57260483 original size:47 final size:47
Alignment explanation
Indices: 57260425--57260546 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
57260415 GCATTGGCAC
*
57260425 TAAGACAAGGATACCCTGTAAGACCATGTTTGGAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
*
57260472 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
* *
57260519 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
57260547 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
Found at i:57260591 original size:56 final size:55
Alignment explanation
Indices: 57260525--57260721 Score: 220
Period size: 56 Copynumber: 3.6 Consensus size: 55
57260515 TTGGTAAGAT
* * *
57260525 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGAGGA
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAG-GCA
* * * *
57260581 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTATTATAAGGCA
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTT-CTATAAGGCA
** * *
57260637 AAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTC-ATAAGG-T
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGCA
* ** *
57260689 AAGGATACCACATAAGACCATGTCAAGACATGG
1 AAGGATATCATGTAAGACCATGTCAAGGCATGG
57260722 AAATGGTAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 30 0.25
55 34 0.28
56 46 0.38
57 6 0.05
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (55 bp):
AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGCA
Found at i:57283102 original size:81 final size:80
Alignment explanation
Indices: 57282967--57283190 Score: 362
Period size: 81 Copynumber: 2.8 Consensus size: 80
57282957 TATTCGGATG
*
57282967 ATAACCGGGCTAAGTCCGCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
57283032 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
57283048 ATAACCGGGCTAAGTCCCGAAGGCATTTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
57283113 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * * *
57283129 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
57283191 TACTTGGTTT
Statistics
Matches: 136, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
79 16 0.12
80 24 0.18
81 96 0.71
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:57283171 original size:40 final size:40
Alignment explanation
Indices: 57282967--57283157 Score: 337
Period size: 40 Copynumber: 4.7 Consensus size: 40
57282957 TATTCGGATG
*
57282967 ATAACCGGGCTAAGTCCGCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACT
*
57283008 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
57283048 ATAACCGGGCTAAGTCCCGAAGGCATTTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACT
*
57283089 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
57283129 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
57283158 AGCAAGTAGC
Statistics
Matches: 144, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
40 89 0.62
41 55 0.38
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:57291195 original size:79 final size:79
Alignment explanation
Indices: 57291028--57291247 Score: 365
Period size: 79 Copynumber: 2.8 Consensus size: 79
57291018 TATTCGGATG
57291028 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCA
57291093 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
57291108 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCAT
57291172 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * *
57291186 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCT-AAGTCCGAAGG
57291248 TACTTGGTTT
Statistics
Matches: 134, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
78 34 0.25
79 96 0.72
80 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:57291236 original size:39 final size:40
Alignment explanation
Indices: 57291032--57291247 Score: 341
Period size: 39 Copynumber: 5.5 Consensus size: 40
57291022 CGGATGATAA
57291032 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
57291072 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57291111 ACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57291151 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57291190 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57291230 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57291248 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 92 0.56
40 73 0.44
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57299009 original size:40 final size:40
Alignment explanation
Indices: 57298925--57299060 Score: 164
Period size: 41 Copynumber: 3.4 Consensus size: 40
57298915 TTTGAAACAA
* * * *
57298925 AAAACGCCCCTAAAAACTGAGTAATAGTGGCGTTTTCATCC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTT-ATTC
*
57298966 AAAACGCCGTAAAAAACTGAGAAATAGTGGCGTTTTATTC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTATTC
* * *
57299006 AAAACGCCGCAAAAAACTGAGATATAGTGGCACTTTTGTTC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGC-GTTTTATTC
* *
57299047 CAAACGCCACAAAA
1 AAAACGCCGCAAAA
57299061 GGTTGAGCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
40 32 0.39
41 51 0.61
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTATTC
Found at i:57299052 original size:41 final size:40
Alignment explanation
Indices: 57298926--57299082 Score: 156
Period size: 41 Copynumber: 3.9 Consensus size: 40
57298916 TTGAAACAAA
* *
57298926 AAACGCCCCTAAAAACTGAG-TAATAGTGGCGTTTTCA-TCC
1 AAACGCCGCAAAAAACTGAGAT-ATAGTGGCGTTTT-ATTCC
* * *
57298966 AAAACGCCGTAAAAAACTGAGAAATAGTGGCGTTTTATTCA
1 -AAACGCCGCAAAAAACTGAGATATAGTGGCGTTTTATTCC
* *
57299007 AAACGCCGCAAAAAACTGAGATATAGTGGCACTTTTGTTCC
1 AAACGCCGCAAAAAACTGAGATATAGTGGC-GTTTTATTCC
* *** *
57299048 AAACGCCACAAAAGGTTGAGCTATAGTGGCGTTTT
1 AAACGCCGCAAAAAACTGAGATATAGTGGCGTTTT
57299083 TGTAAAAGCG
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 33 0.34
41 64 0.66
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (40 bp):
AAACGCCGCAAAAAACTGAGATATAGTGGCGTTTTATTCC
Found at i:57299635 original size:14 final size:14
Alignment explanation
Indices: 57299618--57299666 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
57299608 ATATGAAGCC
57299618 TAACCCCTAAATCA
1 TAACCCCTAAATCA
* * * *
57299632 TAACCCATGACTACC
1 TAACCCCTAAAT-CA
57299647 TAACCCCTAAATCA
1 TAACCCCTAAATCA
57299661 TAACCC
1 TAACCC
57299667 ATGATCTAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
14 16 0.62
15 10 0.38
ACGTcount: A:0.39, C:0.39, G:0.02, T:0.20
Consensus pattern (14 bp):
TAACCCCTAAATCA
Found at i:57301000 original size:20 final size:19
Alignment explanation
Indices: 57300956--57301000 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
57300946 CCCACCCAAG
* *
57300956 TTTCCCCAAATCCTTAACT
1 TTTCCCCAAATCCCTAAAT
*
57300975 TTTCCCCTAATCCCTAAAT
1 TTTCCCCAAATCCCTAAAT
57300994 ATTTCCC
1 -TTTCCC
57301001 TGAATTACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (19 bp):
TTTCCCCAAATCCCTAAAT
Found at i:57302328 original size:24 final size:24
Alignment explanation
Indices: 57302297--57302346 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
57302287 ATTTCGAGAA
57302297 CTAATAATGGCATAAAATAAGTAG
1 CTAATAATGGCATAAAATAAGTAG
57302321 CTAATAATGGCATAAAATAAGTAG
1 CTAATAATGGCATAAAATAAGTAG
57302345 CT
1 CT
57302347 TTAGATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (24 bp):
CTAATAATGGCATAAAATAAGTAG
Found at i:57303690 original size:24 final size:24
Alignment explanation
Indices: 57303663--57303734 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
57303653 ATTATTATTG
*
57303663 AAATATTCTCGTCCGTTTTATCAT
1 AAATATTATCGTCCGTTTTATCAT
* * *
57303687 AAATATTATTGTCTGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAT
57303711 AAATATTATCGTCCGTTTTATCAT
1 AAATATTATCGTCCGTTTTATCAT
57303735 TTAAGTTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAT
Found at i:57303939 original size:29 final size:29
Alignment explanation
Indices: 57303907--57303980 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
57303897 AACGACATGT
* *
57303907 ATATTATTTAATTAAAATAATTTTTTTCA
1 ATATTATTTAATTAAAATAATTTTTATAA
57303936 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
57303965 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
57303981 TATTATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:57303980 original size:15 final size:15
Alignment explanation
Indices: 57303907--57303992 Score: 90
Period size: 15 Copynumber: 5.9 Consensus size: 15
57303897 AACGACATGT
57303907 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* ** *
57303922 A-ATAATTTTTTTCA
1 ATATTATTTAATTAA
57303936 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
57303952 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
57303965 ATATTATTTAATTAA
1 ATATTATTTAATTAA
57303980 ATATTATTTAATT
1 ATATTATTTAATT
57303993 TGCAACTTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
12 3 0.05
13 7 0.12
14 12 0.21
15 26 0.46
16 6 0.11
17 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:57304111 original size:9 final size:9
Alignment explanation
Indices: 57304097--57304855 Score: 851
Period size: 9 Copynumber: 85.4 Consensus size: 9
57304087 AATATTTAAC
57304097 ATAACTTAT
1 ATAACTTAT
57304106 ATAACTTAT
1 ATAACTTAT
*
57304115 ATAACTTAG
1 ATAACTTAT
*
57304124 ATAA-ATAT
1 ATAACTTAT
57304132 ATAACTTAT
1 ATAACTTAT
*
57304141 ATAACTTAC
1 ATAACTTAT
57304150 ATAACTTAT
1 ATAACTTAT
*
57304159 ATAACTTAG
1 ATAACTTAT
*
57304168 ATAA-ATAT
1 ATAACTTAT
*
57304176 ATAACTTAC
1 ATAACTTAT
*
57304185 ATAACTTAC
1 ATAACTTAT
57304194 ATAACTTAT
1 ATAACTTAT
*
57304203 ATAACTTAG
1 ATAACTTAT
57304212 ATAACTTAT
1 ATAACTTAT
*
57304221 ATAACTTAG
1 ATAACTTAT
*
57304230 ATAA-ATAT
1 ATAACTTAT
57304238 ATAACTTAT
1 ATAACTTAT
*
57304247 ATAACTTAC
1 ATAACTTAT
57304256 ATAACTTAT
1 ATAACTTAT
57304265 ATAACTTAT
1 ATAACTTAT
*
57304274 ATAACTTAG
1 ATAACTTAT
*
57304283 ATAA-ATAT
1 ATAACTTAT
57304291 ATAACTTAT
1 ATAACTTAT
*
57304300 ATAACTTAC
1 ATAACTTAT
*
57304309 ATCACTTAT
1 ATAACTTAT
*
57304318 ATAACTTAC
1 ATAACTTAT
*
57304327 ATAACTTAC
1 ATAACTTAT
*
57304336 ATAACTTAG
1 ATAACTTAT
*
57304345 ATAACTTAG
1 ATAACTTAT
57304354 ATAACTTAT
1 ATAACTTAT
* *
57304363 ATAACCTAG
1 ATAACTTAT
*
57304372 ATAA-ATAT
1 ATAACTTAT
57304380 ATAACTTAT
1 ATAACTTAT
*
57304389 ATAACTTAC
1 ATAACTTAT
57304398 ATAACTTAT
1 ATAACTTAT
57304407 ATAACTTAT
1 ATAACTTAT
*
57304416 ATAACTTAG
1 ATAACTTAT
*
57304425 ATAA-ATAT
1 ATAACTTAT
57304433 ATAACTTAT
1 ATAACTTAT
*
57304442 ATAACTTAC
1 ATAACTTAT
57304451 ATAACTTAT
1 ATAACTTAT
*
57304460 ATAACTTAG
1 ATAACTTAT
*
57304469 ATAA-ATAT
1 ATAACTTAT
*
57304477 ATAACTTAC
1 ATAACTTAT
* *
57304486 GTAACTTAC
1 ATAACTTAT
57304495 ATAACTTAT
1 ATAACTTAT
*
57304504 ATAACTTAG
1 ATAACTTAT
*
57304513 ATAA-ATAT
1 ATAACTTAT
57304521 ATAACTTAT
1 ATAACTTAT
*
57304530 ATAACTTAC
1 ATAACTTAT
57304539 ATAACTTAT
1 ATAACTTAT
57304548 ATAACTTAT
1 ATAACTTAT
57304557 ATAACTTAT
1 ATAACTTAT
*
57304566 ATAACTTAC
1 ATAACTTAT
*
57304575 ATCACTTAT
1 ATAACTTAT
*
57304584 ATAACTTAC
1 ATAACTTAT
*
57304593 ATCACTTAT
1 ATAACTTAT
*
57304602 ATAACTTAC
1 ATAACTTAT
*
57304611 ATAACTTAC
1 ATAACTTAT
*
57304620 ATAACTTAG
1 ATAACTTAT
*
57304629 ATAACTTAG
1 ATAACTTAT
57304638 ATAACTTAT
1 ATAACTTAT
* *
57304647 ATAACCTAG
1 ATAACTTAT
*
57304656 ATAA-ATAT
1 ATAACTTAT
57304664 ATAACTTAT
1 ATAACTTAT
*
57304673 ATAACTTAC
1 ATAACTTAT
57304682 ATAACTTAT
1 ATAACTTAT
57304691 ATAACTTAT
1 ATAACTTAT
*
57304700 ATAACTTAG
1 ATAACTTAT
*
57304709 ATAA-ATAT
1 ATAACTTAT
*
57304717 ATAACTTAC
1 ATAACTTAT
*
57304726 ATAACTTAC
1 ATAACTTAT
57304735 ATAACTTATAT
1 ATAAC-T-TAT
57304746 ATAACTTAT
1 ATAACTTAT
*
57304755 ATAACTTAG
1 ATAACTTAT
*
57304764 ATAA-ATAT
1 ATAACTTAT
57304772 ATAACTTAT
1 ATAACTTAT
*
57304781 ATAACTTAC
1 ATAACTTAT
57304790 ATAACTTAT
1 ATAACTTAT
*
57304799 ATAACTTAG
1 ATAACTTAT
*
57304808 ATAA-ATAT
1 ATAACTTAT
* *
57304816 ATATCTTAC
1 ATAACTTAT
*
57304825 ATAA-ATAT
1 ATAACTTAT
* *
57304833 ATATCATAT
1 ATAACTTAT
*
57304842 CATAACTTAC
1 -ATAACTTAT
57304852 ATAA
1 ATAA
57304856 TTTACATAAT
Statistics
Matches: 633, Mismatches: 101, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
8 76 0.12
9 542 0.86
10 8 0.01
11 7 0.01
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:57304145 original size:44 final size:45
Alignment explanation
Indices: 57304097--57304864 Score: 815
Period size: 44 Copynumber: 17.5 Consensus size: 45
57304087 AATATTTAAC
* *
57304097 ATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304141 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTAC
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
*
57304185 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAG
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * *
57304230 ATAA-ATATATAACTTATATAACTTACATAACTTATATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * * *
57304274 ATAACTTAGATAA-ATATATAACTTATATAACTTACATCACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304318 ATAACTTACATAACTTACATAACTTAGATAACTTAGATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * *
57304363 ATAAC---C-T-A--GATA-AA--TATATAACTTATATAACTTAC
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304398 ATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304442 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTAC
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304486 GTAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304530 ATAACTTACATAACTTATATAACTTATATAACTTATATAACTTAC
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * * * * *
57304575 ATCACTTATATAACTTACATCACTTATATAACTTACATAACTTAC
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * * * *
57304620 ATAACTTAGATAACTTAGATAACTTATATAACCTAGATAA-ATAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * *
57304664 ATAACTTATATAACTTACATAACTTATATAACTTATATAACTTAG
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * *
57304709 ATAA-ATATATAACTTACATAACTTACATAACTTATATATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAAC-T-TATATAACTTAT
* * * *
57304755 ATAACTTAGATAA-ATATATAACTTATATAACTTACATAACTTAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * * * * *
57304799 ATAACTTAGATAA-ATATATATCTTACATAA-ATATATATCATAT
1 ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
57304842 CATAACTTACATAATTTACATAA
1 -ATAACTTACATAACTTATATAA
57304865 TACTTAAATA
Statistics
Matches: 628, Mismatches: 76, Indels: 39
0.85 0.10 0.05
Matches are distributed among these distances:
35 23 0.04
37 2 0.00
38 2 0.00
39 1 0.00
40 2 0.00
41 1 0.00
42 4 0.01
43 11 0.02
44 390 0.62
45 156 0.25
46 30 0.05
47 6 0.01
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.38
Consensus pattern (45 bp):
ATAACTTACATAACTTATATAACTTAGATAACTTATATAACTTAT
Found at i:57304152 original size:53 final size:54
Alignment explanation
Indices: 57304095--57304811 Score: 889
Period size: 53 Copynumber: 13.4 Consensus size: 54
57304085 TAAATATTTA
*
57304095 ACATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * * *
57304148 ACATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTTACATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * *
57304201 ATATAACTTAGATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
*
57304254 ACATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * * *
57304307 ACATCACTTATATAACTTACATAACTTACATAACTTAGATAACTTAGATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * * * *
57304361 ATATAACCTAGATAA-ATATATAACTTATATAACTTACATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * * *
57304414 ATATAACTTAGATAA-ATATATAACTTATATAACTTACATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * ** * * *
57304467 AGATAA-ATATATAACTTACGTAACTTACATAACTTATATAACTTAGATAA-AT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * *
57304519 ATATAACTTATATAACTTACATAACTTATATAACTTATATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * * * *
57304573 ACATCACTTATATAACTTACATCACTTATATAACTTACATAACTTACATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* * * *
57304627 AGATAACTTAGATAACTTATATAACCTAGATAA-ATATATAACTTATATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
* *
57304680 ACATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTT
1 ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
*
57304733 ACATAACTTATATATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTT
1 ACATAAC-T-TATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
*
57304788 ACATAACTTATATAACTTAGATAA
1 ACATAACTTATATAACTTATATAA
57304812 ATATATATCT
Statistics
Matches: 587, Mismatches: 69, Indels: 16
0.87 0.10 0.02
Matches are distributed among these distances:
52 18 0.03
53 406 0.69
54 112 0.19
55 51 0.09
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (54 bp):
ACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTATATAACTT
Found at i:57308624 original size:27 final size:27
Alignment explanation
Indices: 57308586--57308744 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
57308576 GCGAGGCTGC
*
57308586 CAGATATTGTGGC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
57308613 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
57308639 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
57308666 CAGATAATCGTGGCATAGCCACTAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
57308693 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
57308720 CAGATAATTGTGGCATATCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
57308745 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:57308679 original size:54 final size:54
Alignment explanation
Indices: 57308586--57308744 Score: 234
Period size: 54 Copynumber: 3.0 Consensus size: 54
57308576 GCGAGGCTGC
* *
57308586 CAGATAT-TGTGGC-GAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAG-AGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
57308639 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACTAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
*
57308693 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATATCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
57308745 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
53 12 0.12
54 83 0.86
55 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:57310379 original size:26 final size:26
Alignment explanation
Indices: 57310348--57310403 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
57310338 TGAAATGCCC
57310348 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
57310374 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
57310400 ATCA
1 ATCA
57310404 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:57315703 original size:27 final size:27
Alignment explanation
Indices: 57315655--57315784 Score: 149
Period size: 27 Copynumber: 4.8 Consensus size: 27
57315645 ATGAGGCTGC
* * *
57315655 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
57315682 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
57315708 CAGATATATGTGGCAGAGCCACCA-AAA
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
57315735 CAGATATATGTGGCAGAACCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
57315762 CAGATAATTGTGGCATAGCCACC
1 CAGAT-ATTGTGGCAGAGCCACC
57315785 TGGACGCTTC
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
26 9 0.10
27 78 0.87
28 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:57317428 original size:26 final size:26
Alignment explanation
Indices: 57317396--57317500 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
57317386 AATGCCCATT
*
57317396 ATGGAACATTTACCTAAACCATTATC
1 ATGGAACATTTACCTAACCCATTATC
57317422 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
57317448 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
57317474 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
57317500 A
1 A
57317501 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:57321139 original size:43 final size:43
Alignment explanation
Indices: 57321074--57321366 Score: 291
Period size: 43 Copynumber: 6.6 Consensus size: 43
57321064 TGGGAAAAAT
* * * ***
57321074 GCCGCTAAAAGCCATTAATTTTAGCGGCACTTTCTGTACAAAC
1 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
57321117 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
1 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
* *
57321160 GCCGCTAAAAGCCCCGCTAAAGTAATGCTTTTAGCGGAGC-TTCCCTAACAAAC
1 GCCGCTAAAAG---C-C---A-TGA--CTTTTAGCGGCGCTTTCCC-AACAAAC
*
57321213 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAAC
1 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
* * * *
57321256 GCCACTAAAAGCCGTGACTTTTAGCAGCGCTTACCCAACAAAC
1 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
* * *** *
57321299 GCCGCTAAAAGCCATGACTTTTAACTGCGCTTTTTTAACAAAG
1 GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
* *
57321342 GCCGCTAAAAGTCATGGCTTTTAGC
1 GCCGCTAAAAGCCATGACTTTTAGC
57321367 AGCGTTTTTA
Statistics
Matches: 211, Mismatches: 27, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
43 162 0.77
44 4 0.02
45 2 0.01
46 2 0.01
47 1 0.00
49 1 0.00
50 2 0.01
51 2 0.01
52 5 0.02
53 30 0.14
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAAC
Found at i:57326019 original size:6 final size:6
Alignment explanation
Indices: 57326003--57326044 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
57325993 AGTCCCTTTC
* *
57326003 TTTTTA CTTTTA TTTTTA TTTTTA TTTTTA TTTTTA ATTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
57326045 CCTTTCTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:57326020 original size:12 final size:12
Alignment explanation
Indices: 57326003--57326064 Score: 61
Period size: 12 Copynumber: 4.9 Consensus size: 12
57325993 AGTCCCTTTC
57326003 TTTTTACTTTTA
1 TTTTTACTTTTA
*
57326015 TTTTTATTTTTA
1 TTTTTACTTTTA
*
57326027 TTTTTATTTTTA
1 TTTTTACTTTTA
* *
57326039 ATTTTACCTTTCTG
1 TTTTTA-CTTT-TA
57326053 TTATTTACTTTT
1 TT-TTTACTTTT
57326065 GAAGACTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
12 28 0.67
13 4 0.10
14 6 0.14
15 4 0.10
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTTACTTTTA
Found at i:57326930 original size:15 final size:16
Alignment explanation
Indices: 57326905--57326934 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
57326895 TAAGAATTTT
57326905 TCCCATTTTTATTAAC
1 TCCCATTTTTATTAAC
57326921 TCCC-TTTTTATTAA
1 TCCCATTTTTATTAA
57326935 GATTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.53
Consensus pattern (16 bp):
TCCCATTTTTATTAAC
Found at i:57331234 original size:31 final size:31
Alignment explanation
Indices: 57331194--57331257 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57331184 CATACTTTTA
57331194 TTCTCGTTGTTTTTATTGACGATATACTAAT
1 TTCTCGTTGTTTTTATTGACGATATACTAAT
*
57331225 TTCTGGTTGTTTTTATTGACGATATACTAAT
1 TTCTCGTTGTTTTTATTGACGATATACTAAT
57331256 TT
1 TT
57331258 ATTCTCGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.11, G:0.14, T:0.53
Consensus pattern (31 bp):
TTCTCGTTGTTTTTATTGACGATATACTAAT
Found at i:57334201 original size:43 final size:41
Alignment explanation
Indices: 57334108--57334273 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 41
57334098 AATGTGATAT
* ** *
57334108 TCGGGCTTCGGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGCCTAGCAGGCGATAATGCCGGTGAAT-A-A-TA
* *
57334151 TCAGGCTTCTGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
1 TCGGGCTTC-GGCCTAGCAGGCGATAATGCCGGTGA-ATAATA
* *
57334194 TCGGGCTTCGGGCCTAGTAGGCGATAATGCCGGTGAAATGATA
1 TCGGGCTTC-GGCCTAGCAGGCGATAATGCCGGTG-AATAATA
* *
57334237 TCGGGCTTCAAGCCTAGCAGGCGA-AATGCCAGTGAAT
1 TCGGGCTTC-GGCCTAGCAGGCGATAATGCCGGTGAAT
57334274 GAGTTCAAAC
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 67 0.63
44 17 0.16
45 8 0.08
46 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (41 bp):
TCGGGCTTCGGCCTAGCAGGCGATAATGCCGGTGAATAATA
Found at i:57344922 original size:15 final size:15
Alignment explanation
Indices: 57344899--57344928 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57344889 GAGTCATAAG
*
57344899 AAAATAGAAATAGAA
1 AAAACAGAAATAGAA
57344914 AAAACAGAAATAGAA
1 AAAACAGAAATAGAA
57344929 TTTTTAGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.03, G:0.13, T:0.10
Consensus pattern (15 bp):
AAAACAGAAATAGAA
Found at i:57345702 original size:18 final size:18
Alignment explanation
Indices: 57345679--57345749 Score: 74
Period size: 18 Copynumber: 3.8 Consensus size: 18
57345669 AGCAGATAAA
57345679 TCCTAATCAAGGATTTAC
1 TCCTAATCAAGGATTTAC
57345697 TCCTAATC-AGGAATTTAC
1 TCCTAATCAAGG-ATTTAC
*
57345715 TCCTATATTAACAGGATTCTA-
1 TCCTA-A-TCA-AGGATT-TAC
57345736 TCCTAATCAAGGAT
1 TCCTAATCAAGGAT
57345750 ATTATGTTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
17 3 0.07
18 24 0.53
19 3 0.07
20 2 0.04
21 8 0.18
22 5 0.11
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (18 bp):
TCCTAATCAAGGATTTAC
Found at i:57349003 original size:29 final size:29
Alignment explanation
Indices: 57348970--57349043 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
57348960 GTTGTGAGAT
* *
57348970 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
57348999 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
57349028 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
57349044 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:57356852 original size:29 final size:28
Alignment explanation
Indices: 57356794--57356852 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
57356784 TTCGATTGTG
**
57356794 AAATTACCAAAATACCCTCAATTTGTAA
1 AAATTACCAAAATACCCTCAATTTACAA
*
57356822 AAATTACCAAAAATACCC-CTGATTTACAA
1 AAATTACC-AAAATACCCTC-AATTTACAA
57356851 AA
1 AA
57356853 TTATAGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.49, C:0.22, G:0.03, T:0.25
Consensus pattern (28 bp):
AAATTACCAAAATACCCTCAATTTACAA
Found at i:57356879 original size:27 final size:27
Alignment explanation
Indices: 57356832--57356909 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
57356822 AAATTACCAA
57356832 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCCTGATTTACAAAATTATAG
* *
57356859 AAATACCCTTGACTTT-TAAAATTATAG
1 AAATACCCCTGA-TTTACAAAATTATAG
** *
57356886 AAATACCATTGGTTTACAAAATTA
1 AAATACCCCTGATTTACAAAATTA
57356910 CTGAAATGCC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
26 3 0.07
27 38 0.86
28 3 0.07
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATACCCCTGATTTACAAAATTATAG
Found at i:57356927 original size:27 final size:27
Alignment explanation
Indices: 57356844--57356927 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
57356834 ATACCCCTGA
*
57356844 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTT-AG
* * *
57356872 TTT-TAAAATTATAGAAATACCATTGG
1 TTTACAAAATTATAGAAATACCCTTAG
*
57356898 TTTACAAAATTACT-GAAATGCCCTTAG
1 TTTACAAAATTA-TAGAAATACCCTTAG
57356925 TTT
1 TTT
57356928 GTAGATTTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.07
27 39 0.85
28 4 0.09
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTAG
Found at i:57357035 original size:27 final size:27
Alignment explanation
Indices: 57356992--57357047 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
57356982 GTTAAAAAGA
*
57356992 ACCGTAAAGCCCCTGTAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAATG
* *
57357019 ACCGTAATA-CCCTTGTATGGTAAAATG
1 ACCGTAA-AGCCCCTGTAGGGTAAAATG
57357046 AC
1 AC
57357048 GAATATGCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
ACCGTAAAGCCCCTGTAGGGTAAAATG
Found at i:57357865 original size:26 final size:26
Alignment explanation
Indices: 57357836--57358000 Score: 228
Period size: 26 Copynumber: 6.4 Consensus size: 26
57357826 GGAGGAAGTT
*
57357836 AAAAGGGTTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57357862 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57357888 AAAAGGGCTTATGCCCCAAGTTTTATTG
1 AAAAGGGCTTATGCCCC-AG-TTTATTG
**
57357916 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
57357942 GAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
57357967 AAAA-GGCTT-CGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57357991 AAAAGGGCTT
1 AAAAGGGCTT
57358001 GCCCATTTAT
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
23 1 0.01
24 19 0.15
25 18 0.14
26 59 0.47
27 4 0.03
28 24 0.19
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:57357925 original size:54 final size:52
Alignment explanation
Indices: 57357836--57358000 Score: 246
Period size: 54 Copynumber: 3.2 Consensus size: 52
57357826 GGAGGAAGTT
* **
57357836 AAAAGGGTTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
57357888 AAAAGGGCTTATGCCCCAAGTTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCC-AG-TTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
57357942 GAAAGGGCTTATG-CCCAGTTTATTGAAAA-GGCTT-CGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
57357991 AAAAGGGCTT
1 AAAAGGGCTT
57358001 GCCCATTTAT
Statistics
Matches: 105, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
49 23 0.22
50 5 0.05
51 11 0.10
52 18 0.17
53 5 0.05
54 43 0.41
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:57358249 original size:32 final size:31
Alignment explanation
Indices: 57358213--57358285 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
57358203 GGGCCATAGC
*
57358213 ATTTACAGTAAAGGCTTCGGCCCAATGATATG
1 ATTTA-AGAAAAGGCTTCGGCCCAATGATATG
* *
57358245 ATTTATGAAAAGGCTTCGGCCCAGTGATATG
1 ATTTAAGAAAAGGCTTCGGCCCAATGATATG
*
57358276 ATTTATGAAA
1 ATTTAAGAAA
57358286 GCTTCAGCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 33 0.87
32 5 0.13
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (31 bp):
ATTTAAGAAAAGGCTTCGGCCCAATGATATG
Found at i:57358257 original size:31 final size:31
Alignment explanation
Indices: 57358222--57358285 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57358212 CATTTACAGT
57358222 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
57358253 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
57358284 AA
1 AA
57358286 GCTTCAGCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:57360923 original size:25 final size:26
Alignment explanation
Indices: 57360869--57361017 Score: 198
Period size: 26 Copynumber: 5.9 Consensus size: 26
57360859 GAGGAAGTGT
**
57360869 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57360895 AAAAGGGCTTATG-CCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
57360920 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * **
57360946 GAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57360972 AAAAGGGCTT-CGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
57360997 AAAAGGGCTT-TGCCCCA-TTTA
1 AAAAGGGCTTATGCCCCAGTTTA
57361018 TTAAAAGGGC
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
24 4 0.04
25 49 0.45
26 55 0.51
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:57360951 original size:51 final size:52
Alignment explanation
Indices: 57360869--57361011 Score: 202
Period size: 51 Copynumber: 2.8 Consensus size: 52
57360859 GAGGAAGTGT
**
57360869 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCC-AGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTACCA
* ***
57360920 AAAAGGGCTTATGCCCCAGTTTACCGGAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTACCA
*
57360972 AAAAGGGCTT-CGCCCCAGTTTACCGAAAAGGGCTT-TGCCC
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCC
57361012 CATTTATTAA
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
50 5 0.06
51 62 0.75
52 16 0.19
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTACCA
Found at i:57361266 original size:31 final size:31
Alignment explanation
Indices: 57361231--57361300 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
57361221 CGTTTACAGT
*
57361231 AAAGGCTTCGACCCAA-TG-ATATGGTTTATGA
1 AAAGGCTTC--CCCAAGTGAATATGATTTATGA
57361262 AAAGGCTT-CCCAAGTGAATATGATTTATGA
1 AAAGGCTTCCCCAAGTGAATATGATTTATGA
57361292 AAAGGCTTC
1 AAAGGCTTC
57361301 AGCCCAGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 5 0.14
29 2 0.06
30 20 0.57
31 8 0.23
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCCCCAAGTGAATATGATTTATGA
Found at i:57366048 original size:15 final size:15
Alignment explanation
Indices: 57366009--57366079 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
57365999 GTATCTTGGG
*
57366009 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
57366024 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
57366039 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
57366054 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
57366069 TTTCTTTATTC
1 TTTCTTTATTC
57366080 GATTTTCTTG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
14 2 0.04
15 41 0.91
16 2 0.04
ACGTcount: A:0.11, C:0.20, G:0.13, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:57366078 original size:30 final size:31
Alignment explanation
Indices: 57366000--57366079 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
57365990 CATAGTATCG
* *
57366000 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCTGGATCTCTC
* *
57366030 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCTGGATCTCTC
57366060 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
57366080 GATTTTCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 38 0.88
31 4 0.09
ACGTcount: A:0.11, C:0.19, G:0.15, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCTGGATCTCTC
Found at i:57368609 original size:45 final size:46
Alignment explanation
Indices: 57368451--57368625 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
57368441 TATTTGGGCA
*
57368451 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
57368497 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
**
57368542 CATCCGAGTTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
57368590 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57368626 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.34
46 29 0.27
47 27 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:57376780 original size:40 final size:40
Alignment explanation
Indices: 57376686--57376830 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57376676 TACTCGAATG
*
57376686 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
57376727 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
57376767 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
57376807 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
57376831 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:57383526 original size:38 final size:38
Alignment explanation
Indices: 57383483--57383557 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
57383473 TTCATCCTTT
57383483 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
57383521 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGA
57383558 GTTCTTGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:57384835 original size:40 final size:40
Alignment explanation
Indices: 57384741--57384885 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57384731 TACTCGAATG
*
57384741 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
57384782 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
57384822 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
57384862 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
57384886 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:57395654 original size:49 final size:49
Alignment explanation
Indices: 57395585--57395768 Score: 190
Period size: 49 Copynumber: 3.7 Consensus size: 49
57395575 ATCTATTGTG
* *
57395585 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATT
* * * *
57395635 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGATAA-TT
* * * * * * **
57395685 CGATCATGTGTGTAGTACTAAGTGTAGGCCACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAATT
*
57395735 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
57395769 TGCATACCAG
Statistics
Matches: 107, Mismatches: 23, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
49 39 0.36
50 33 0.31
51 34 0.32
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATT
Found at i:57407134 original size:30 final size:29
Alignment explanation
Indices: 57407064--57407139 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
57407054 ACGACCATTA
* *
57407064 AATTATGAAAAGGGATAGCTTCGGCTATC
1 AATTATGAAAAGGGATAACTTCAGCTATC
* *
57407093 AAGCTATGAAAAGGGATAACTTCAGTTATC
1 AA-TTATGAAAAGGGATAACTTCAGCTATC
*
57407123 GAATTACGAAAAGGGAT
1 -AATTATGAAAAGGGAT
57407140 GTGTTAGCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 2 0.05
30 35 0.90
31 2 0.05
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (29 bp):
AATTATGAAAAGGGATAACTTCAGCTATC
Found at i:57412632 original size:41 final size:41
Alignment explanation
Indices: 57412586--57412668 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
57412576 TTTCATATAC
57412586 CATAGTTTCCATGTATTCCACATATATTTATTTTTCCTCCT
1 CATAGTTTCCATGTATTCCACATATATTTATTTTTCCTCCT
57412627 CATAGTTTCCATGTATTCCACATATATTTATTTTTCCTCCT
1 CATAGTTTCCATGTATTCCACATATATTTATTTTTCCTCCT
57412668 C
1 C
57412669 CTCCTCTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.25, G:0.05, T:0.48
Consensus pattern (41 bp):
CATAGTTTCCATGTATTCCACATATATTTATTTTTCCTCCT
Found at i:57412679 original size:41 final size:41
Alignment explanation
Indices: 57412593--57412679 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 41
57412583 TACCATAGTT
* *
57412593 TCCATGTATTCCACATATATTTATTTTTCCTCCTCATAGTT
1 TCCATGTATTCCACATATATTTATTTTTCCTCCTCATACTC
* *
57412634 TCCATGTATTCCACATATATTTATTTTTCCTCCTCCTCCTC
1 TCCATGTATTCCACATATATTTATTTTTCCTCCTCATACTC
57412675 TCCAT
1 TCCAT
57412680 TCCACATCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.20, C:0.30, G:0.03, T:0.47
Consensus pattern (41 bp):
TCCATGTATTCCACATATATTTATTTTTCCTCCTCATACTC
Found at i:57417659 original size:48 final size:48
Alignment explanation
Indices: 57417590--57417767 Score: 241
Period size: 48 Copynumber: 3.7 Consensus size: 48
57417580 TAGGGTTATG
* *
57417590 TGTGATCTCATGTAAGACCATGTCTAGGACATGGAATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
* * *
57417638 TGTGATCCCATGTAAGACCATGTCTGGGATATGCCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
* * *
57417686 TGTGATCCCATGTAAGACCATATCT-GGTATATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTAGG-ACATGGCATTGGCATCGATA
** *
57417734 TGTGATTTCGTGTAAGACCATGTCTAGGACATGG
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGG
57417768 TCTCGACATA
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.02
48 111 0.97
49 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
Found at i:57422847 original size:9 final size:9
Alignment explanation
Indices: 57422835--57422891 Score: 69
Period size: 9 Copynumber: 5.9 Consensus size: 9
57422825 TTTGATATAC
57422835 ATGATATGT
1 ATGATATGT
57422844 ATGATATGCAT
1 ATGATATG--T
57422855 ATGATATGT
1 ATGATATGT
*
57422864 ATGATATGCAC
1 ATGATATG--T
57422875 ATGATATGT
1 ATGATATGT
57422884 ATGATATG
1 ATGATATG
57422892 CACATGATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 25 0.60
11 17 0.40
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (9 bp):
ATGATATGT
Found at i:57422860 original size:20 final size:20
Alignment explanation
Indices: 57422833--57422899 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
57422823 ATTTTGATAT
57422833 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
57422853 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57422873 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57422893 ACATGAT
1 ACATGAT
57422900 GTATTCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57422977 original size:25 final size:24
Alignment explanation
Indices: 57422950--57423031 Score: 96
Period size: 24 Copynumber: 3.4 Consensus size: 24
57422940 AGGAAGTGCA
* *
57422950 AAAAGGGCTATGCCCTAGTTTA-C
1 AAAAGGGCTTTGCCCCAGTTTATC
57422973 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
*
57422999 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
57423022 AAAAGAGGCT
1 AAAAG-GGCT
57423032 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 20 0.38
26 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:57423273 original size:31 final size:31
Alignment explanation
Indices: 57423238--57423300 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
57423228 GTTTACAGTG
57423238 AAGGCTTCGGCCCAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
** *
57423269 AAGGCTTCGGCCCAGTGTTATGAGATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
57423300 A
1 A
57423301 TACGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:57430916 original size:11 final size:11
Alignment explanation
Indices: 57430900--57430955 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
57430890 ATACATGATG
57430900 ATGATATGCAC
1 ATGATATGCAC
*
57430911 ATGATATGTAC
1 ATGATATGCAC
57430922 --GATATGCAC
1 ATGATATGCAC
*
57430931 ATGATATG--T
1 ATGATATGCAC
57430940 ATGATATGCAC
1 ATGATATGCAC
57430951 ATGAT
1 ATGAT
57430956 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57430927 original size:20 final size:20
Alignment explanation
Indices: 57430902--57430955 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
57430892 ACATGATGAT
57430902 GATATGCACATGATATGTAC
1 GATATGCACATGATATGTAC
*
57430922 GATATGCACATGATATGTAT
1 GATATGCACATGATATGTAC
57430942 GATATGCACATGAT
1 GATATGCACATGAT
57430956 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
GATATGCACATGATATGTAC
Found at i:57431069 original size:24 final size:24
Alignment explanation
Indices: 57431003--57431085 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
57430993 AGGAAGTGCA
* *
57431003 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
57431027 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
*
57431053 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
57431076 AAAAGAGGCT
1 AAAAG-GGCT
57431086 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 9 0.17
24 14 0.26
25 16 0.30
26 14 0.26
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:57431356 original size:35 final size:31
Alignment explanation
Indices: 57431294--57431380 Score: 124
Period size: 35 Copynumber: 2.7 Consensus size: 31
57431284 CGTTTACAGT
57431294 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57431325 AAAGGCTTCGGCCCAGTGTTTAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G--TAATATGAAATATGA
57431360 AAAGGCTTCGG-CCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
57431381 CTGAGATGGA
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.10
30 1 0.02
31 15 0.29
32 1 0.02
33 1 0.02
34 3 0.06
35 26 0.50
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57432071 original size:30 final size:30
Alignment explanation
Indices: 57432037--57432118 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
57432027 TACAGTGGTG
*
57432037 GTCACCATCCCTTTTCATAATTTGGTGAAC
1 GTCACCATCCCTTTTCATAATTTGATGAAC
***
57432067 GTCACCATCCCTTTTCATAATTTGATGGTT
1 GTCACCATCCCTTTTCATAATTTGATGAAC
57432097 GTCACCATCCCTTTTCATAATT
1 GTCACCATCCCTTTTCATAATT
57432119 GATAGTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (30 bp):
GTCACCATCCCTTTTCATAATTTGATGAAC
Found at i:57432135 original size:29 final size:30
Alignment explanation
Indices: 57432070--57432143 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
57432060 GGTGAACGTC
* **
57432070 ACCATCCCTTTTCATAATTTGATGGTTGTC
1 ACCATCCCTTTTCATAATTTGATAGTTGAA
57432100 ACCATCCCTTTTCATAA-TTGATAGTTGAA
1 ACCATCCCTTTTCATAATTTGATAGTTGAA
*
57432129 ACTATCCCTTTTCAT
1 ACCATCCCTTTTCAT
57432144 TCATTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (30 bp):
ACCATCCCTTTTCATAATTTGATAGTTGAA
Found at i:57433858 original size:44 final size:43
Alignment explanation
Indices: 57433787--57433932 Score: 136
Period size: 42 Copynumber: 3.4 Consensus size: 43
57433777 TATGTGTTAT
* *
57433787 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATTT-TGATTTA
* * * * *
57433831 CGTGTAAGACCATGTTTGGCACATTGGCAT-AATATATGGTTT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTTA
* * *
57433873 CGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTTA
* *
57433916 CATGTAAGACCACGTCT
1 CGTGTAAGACCATGTCT
57433933 AAGGCGTTGG
Statistics
Matches: 81, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
42 27 0.33
43 27 0.33
44 27 0.33
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:57436644 original size:13 final size:13
Alignment explanation
Indices: 57436622--57436659 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
57436612 GGAGTCACAC
57436622 GCCCGTGTGGGTA
1 GCCCGTGTGGGTA
*
57436635 GCCTGTGTGGGTA
1 GCCCGTGTGGGTA
57436648 GCCCGTGTGGGT
1 GCCCGTGTGGGT
57436660 CCAAGCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.05, C:0.21, G:0.47, T:0.26
Consensus pattern (13 bp):
GCCCGTGTGGGTA
Found at i:57451839 original size:29 final size:28
Alignment explanation
Indices: 57451773--57451839 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
57451763 CCTAATCTCT
* * *
57451773 TTCATATGGCCCATTAGGCCCATTCACA
1 TTCATATGGCCCATCAAGCCCAATCACA
* *
57451801 TTTATGTGGCCCATCAAGCCCAAATCACA
1 TTCATATGGCCCATCAAGCCC-AATCACA
57451830 TTCATATGGC
1 TTCATATGGC
57451840 AACTAGGCCC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 17 0.55
29 14 0.45
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TTCATATGGCCCATCAAGCCCAATCACA
Found at i:57459520 original size:28 final size:29
Alignment explanation
Indices: 57459474--57459557 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 29
57459464 ACCTATATAT
* * * *
57459474 ATATGGCCCATTAGGCCC-ATTCACATTT
1 ATATGGCCCATCAGACCCAAATCACATTC
*
57459502 ATGTGGCCCATCAGACCCAAATCACATTC
1 ATATGGCCCATCAGACCCAAATCACATTC
*
57459531 ATATGG-CCA-CTAGGCCCAAATCACATT
1 ATATGGCCCATC-AGACCCAAATCACATT
57459558 TACAGTCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.02
28 33 0.70
29 13 0.28
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATCAGACCCAAATCACATTC
Found at i:57459788 original size:8 final size:8
Alignment explanation
Indices: 57459772--57459824 Score: 70
Period size: 8 Copynumber: 6.6 Consensus size: 8
57459762 GTAGCCAAAC
57459772 TTTCGGCT
1 TTTCGGCT
*
57459780 TTTCAGCT
1 TTTCGGCT
*
57459788 TTTCGGCA
1 TTTCGGCT
57459796 TTTCGGCT
1 TTTCGGCT
* *
57459804 TTTTGGCA
1 TTTCGGCT
57459812 TTTCGGCT
1 TTTCGGCT
57459820 TTTCG
1 TTTCG
57459825 AGATTTGTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.06, C:0.23, G:0.23, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:57459830 original size:16 final size:16
Alignment explanation
Indices: 57459772--57459824 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
57459762 GTAGCCAAAC
* *
57459772 TTTCGGCTTTTCAGCT
1 TTTCGGCATTTCGGCT
57459788 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCGGCT
*
57459804 TTTTGGCATTTCGGCT
1 TTTCGGCATTTCGGCT
57459820 TTTCG
1 TTTCG
57459825 AGATTTGTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.06, C:0.23, G:0.23, T:0.49
Consensus pattern (16 bp):
TTTCGGCATTTCGGCT
Found at i:57463134 original size:27 final size:28
Alignment explanation
Indices: 57463050--57463147 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
57463040 CATGAGATTG
* * *
57463050 GCACTAAGTGTGCG-GATTTAAATTGTACA
1 GCACTAAGTGTGCGAG-TTT-GATTATATA
57463079 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57463107 GCACTAAGTGTGTGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57463134 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
57463148 GACTTAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 17 0.27
30 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57463158 original size:27 final size:27
Alignment explanation
Indices: 57463050--57463160 Score: 80
Period size: 27 Copynumber: 4.0 Consensus size: 27
57463040 CATGAGATTG
* * * *
57463050 GCACTAAGTGTGCGGATTTAAATTGTACA
1 GCACTAAGTGTG-GGACTTGAA-TATATA
* * *
57463079 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGGGA-CTTGAATATATA
* * *
57463107 GCACTAAGTGTGTGAGTTGATTATATA
1 GCACTAAGTGTGGGACTTGAATATATA
*
57463134 GCACTGAGTGTGCGGACTT-AATATATA
1 GCACTAAGTGTG-GGACTTGAATATATA
57463161 TTTTTGAATC
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
27 29 0.42
28 24 0.35
29 16 0.23
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGGGACTTGAATATATA
Found at i:57463161 original size:29 final size:28
Alignment explanation
Indices: 57463050--57463161 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
57463040 CATGAGATTG
* *
57463050 GCACTAAGTGTGCGGATTTAAATTGTACA
1 GCACTAAGTGTGCGGATTT-AATTATATA
*
57463079 GCACTAAGTGTGC-GAGTTTGATTATATA
1 GCACTAAGTGTGCGGA-TTTAATTATATA
* * *
57463107 GCACTAAGTGTG-TGAGTTGATTATATA
1 GCACTAAGTGTGCGGATTTAATTATATA
* *
57463134 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGCGGATTTAAT-TATAT
57463162 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
27 22 0.31
28 28 0.39
29 21 0.30
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGGATTTAATTATATA
Found at i:57464924 original size:93 final size:93
Alignment explanation
Indices: 57464763--57464933 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
57464753 GGATGGTTGA
* **** *
57464763 GCATCCGAACTCGTTGAGTTGAGTCTGATTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACACACGAACTCATTGAGT
57464828 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
57464856 GCATCCGAACTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCGAACACACGAGCTCATTGAT
1 GCATCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAACACACGAACTCATTGAG
57464920 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
57464934 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACACACGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.