Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 169 of 295
Found at i:57748896 original size:27 final size:27
Alignment explanation
Indices: 57748865--57748951 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
57748855 TTCACGAAGT
57748865 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
57748892 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* * *
57748919 CACCATAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
57748946 CACCAG
1 CACCAG
57748952 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.81
28 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:57748990 original size:184 final size:184
Alignment explanation
Indices: 57748681--57749042 Score: 672
Period size: 184 Copynumber: 2.0 Consensus size: 184
57748671 GTGGCAGAGC
57748681 CACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
* *
57748746 ATAATTGTGGCATAGCCACCAGGACGCTTCCTCCTTAATATAACCCATGTCCTCATGCAACAGAT
66 ATAATCGTGGCATAGCCACCAGGACGCTTCCTCCTTAATATAACCCATGTCCCCATGCAACAGAT
57748811 ATATAATCATGGCATACATCATACAGAATCAGATCGTCATGCTTTTCACGAAGT
131 ATATAATCATGGCATACATCATACAGAATCAGATCGTCATGCTTTTCACGAAGT
*
57748865 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCATATCA
1 CACCAGA-ACAGATATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCA
57748929 GATAATCGTGGCATAGCCACCAGGACGCTTCCTCCTTAATATAACCCATGTCCCCATGCAACAGA
65 GATAATCGTGGCATAGCCACCAGGACGCTTCCTCCTTAATATAACCCATGTCCCCATGCAACAGA
*
57748994 TATATAATCATGGCATACATTATACAGAATCAGATCGTCATGCTTTTCA
130 TATATAATCATGGCATACATCATACAGAATCAGATCGTCATGCTTTTCA
57749043 GTCAAAATTA
Statistics
Matches: 173, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
184 165 0.95
185 8 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (184 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
ATAATCGTGGCATAGCCACCAGGACGCTTCCTCCTTAATATAACCCATGTCCCCATGCAACAGAT
ATATAATCATGGCATACATCATACAGAATCAGATCGTCATGCTTTTCACGAAGT
Found at i:57749119 original size:28 final size:26
Alignment explanation
Indices: 57749057--57749130 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
57749047 AAATTAACCC
** *
57749057 TAGGGGTATAACGGTAATTTTGCACC
1 TAGGGGTATAATAGTAATTTTGCACA
*
57749083 TAGGGGTATAATAGTAATTTTTCATACA
1 TAGGGGTATAATAGTAATTTTGC--ACA
*
57749111 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
57749131 AACTGCTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 20 0.49
28 21 0.51
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTGCACA
Found at i:57750603 original size:26 final size:26
Alignment explanation
Indices: 57750572--57750679 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
57750562 TGAAATGCCC
*
57750572 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
57750598 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
57750624 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
57750650 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57750676 ATCA
1 ATCA
57750680 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:57762150 original size:50 final size:48
Alignment explanation
Indices: 57762096--57762276 Score: 164
Period size: 50 Copynumber: 3.6 Consensus size: 48
57762086 CTGATAGGCA
* *
57762096 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACAT-TGATACACG
* * * * * *
57762146 TAGTAGCATGCACTTAGTACTACACATGTGATCGAAGTCATTGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-ACATTGA-TACACG
* ** * * *
57762197 CAACAGCCTGCACTTAGTACTACACATGTGACTTAACAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACA-T-TGATACACG
*
57762247 TAGTAGCCTGCACTTAGTACTGCACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
57762277 TATTCACAAT
Statistics
Matches: 104, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
49 2 0.02
50 66 0.63
51 36 0.35
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACATTGATACACG
Found at i:57775355 original size:25 final size:25
Alignment explanation
Indices: 57775324--57775374 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
57775314 CCCTTATAAT
* *
57775324 GTGAAAATAACCATTTTGCCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
57775349 GTGAAAATAACCATTATACCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
57775374 G
1 G
57775375 GATATGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:57775429 original size:10 final size:10
Alignment explanation
Indices: 57775414--57775452 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
57775404 CTGTTTTGTA
57775414 CATGATATGC
1 CATGATATGC
57775424 CATGATATGC
1 CATGATATGC
57775434 ACATGATATGC
1 -CATGATATGC
57775445 CATGATAT
1 CATGATAT
57775453 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:57775439 original size:21 final size:21
Alignment explanation
Indices: 57775413--57775452 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
57775403 ACTGTTTTGT
57775413 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
57775434 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
57775453 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:57775533 original size:25 final size:25
Alignment explanation
Indices: 57775499--57775568 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
57775489 GAGGAAGTGC
57775499 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
57775524 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
57775549 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57775569 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:57775592 original size:50 final size:50
Alignment explanation
Indices: 57775499--57775593 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
57775489 GAGGAAGTGC
**
57775499 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACTG
**
57775549 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
57775594 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACTG
Found at i:57775824 original size:31 final size:31
Alignment explanation
Indices: 57775789--57775870 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 31
57775779 CGTTTACAGT
57775789 AAAGGCTTCGGCCCAGTGATATAAATAATGA
1 AAAGGCTTCGGCCCAGTGATATAAATAATGA
* *
57775820 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATAAATAATGA
*
57775851 AAAGGCTT-AGCCCAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
57775871 GTTGAGACTG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
29 4 0.09
30 6 0.13
31 37 0.79
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATAAATAATGA
Found at i:57784823 original size:46 final size:47
Alignment explanation
Indices: 57784737--57784857 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
57784727 AATACCTTGG
* * *
57784737 TTTGGCTATGGGCCATGGTGTAGGTATTCAGAGAGGAGTTACCTT-A
1 TTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGTTACCTTAA
* *
57784783 TTTGGCTATGGGCCATGGTATAGGTACTCTAG-GATAAGTTATCTTAA
1 TTTGGCTATGGGCCATGGTATAGGTACTC-AGAGAGAAGTTACCTTAA
** *
57784830 TTTGGCTACAGACCATGGTATAGGTACT
1 TTTGGCTATGGGCCATGGTATAGGTACT
57784858 TATCAATTGA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 37 0.57
47 28 0.43
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGTTACCTTAA
Found at i:57790340 original size:31 final size:31
Alignment explanation
Indices: 57790302--57790365 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
57790292 TTGTTTGATT
57790302 TAGCTCAAGAGCCTAGAGGATCAAAGTTGGA
1 TAGCTCAAGAGCCTAGAGGATCAAAGTTGGA
57790333 TAGCTCAAGAGCCTAGAGGATCAAAGTTGGA
1 TAGCTCAAGAGCCTAGAGGATCAAAGTTGGA
57790364 TA
1 TA
57790366 AGGGAAAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (31 bp):
TAGCTCAAGAGCCTAGAGGATCAAAGTTGGA
Found at i:57790788 original size:40 final size:40
Alignment explanation
Indices: 57790728--57790952 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
57790718 TATTCGGATG
*
57790728 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
57790768 ATATCCAGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57790808 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGATGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* *
57790851 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57790891 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57790931 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
57790953 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:57790971 original size:83 final size:80
Alignment explanation
Indices: 57790728--57790952 Score: 353
Period size: 83 Copynumber: 2.8 Consensus size: 80
57790718 TATTCGGATG
* *
57790728 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCAGGCTAAGTTCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTAAGTCCCGAAGGCA
57790793 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
57790808 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGATGCTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCAGGCTAAGTCCCGAAG
57790873 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* * *
57790891 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTAAGTCCCGAAGG
57790953 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
79 14 0.10
80 44 0.33
81 1 0.01
82 1 0.01
83 74 0.55
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:57798862 original size:40 final size:40
Alignment explanation
Indices: 57798807--57799031 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
57798797 TATTCGGATG
* ** *
57798807 ATATCTGGGCTAAGTCCCGAAGGTGTTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57798847 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57798887 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
57798930 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57798970 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
57799010 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
57799032 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 14 0.09
40 111 0.69
43 35 0.22
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:57799050 original size:83 final size:80
Alignment explanation
Indices: 57798807--57799031 Score: 344
Period size: 83 Copynumber: 2.8 Consensus size: 80
57798797 TATTCGGATG
* ** *
57798807 ATATCTGGGCTAAGTCCCGAAGGTGTTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
57798872 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
57798887 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCGGGCTAAGTCCCGAAG
57798952 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* *
57798970 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
57799032 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
79 15 0.11
80 40 0.30
81 1 0.01
82 1 0.01
83 75 0.57
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:57801326 original size:43 final size:43
Alignment explanation
Indices: 57801264--57801434 Score: 236
Period size: 43 Copynumber: 4.0 Consensus size: 43
57801254 TATCGAAATG
57801264 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
57801308 TGATATCGGGCTTGGGGCCTAGCAGGCTATAATGCCAGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
57801351 TAATATCGAGCCTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** * *
57801394 TGATATCGGGCTTCAAGCCTAGCAGG-TAAAATTCCGGTGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
57801435 TGACTTAAGA
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 13 0.12
43 93 0.84
44 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:57804525 original size:50 final size:50
Alignment explanation
Indices: 57804468--57804671 Score: 232
Period size: 50 Copynumber: 4.1 Consensus size: 50
57804458 GAAGCTCTTC
* *
57804468 GGTACACATAGTAGCCTGTACTTAGTACTACACATACGACCTAACAATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCT
* * *
57804518 GGTACACATAGTAGCATGCACTTAGTACTACACACT-TGACCTAACCATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA-TGCGACCTAACAATCT
* * * * * * * *
57804568 GATACACGTAGTAGTCTGCACTTAGTACTACACACGTGATCGAAGCTATC-
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCT
* *
57804618 GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATAATCT
1 G-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCT
57804669 GGT
1 GGT
57804672 GTAACACCCC
Statistics
Matches: 127, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
50 86 0.68
51 41 0.32
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCT
Found at i:57805716 original size:39 final size:39
Alignment explanation
Indices: 57805635--57805726 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 39
57805625 AAACCAATTA
*
57805635 CCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAATG
1 CCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATG
* * * * *
57805673 CCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATATTT
1 CCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAATG
*
57805712 CCAGCACGTAGCCTG
1 CCAGCACGAAGCCTG
57805727 TGGACCTTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
38 12 0.27
39 32 0.73
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATG
Found at i:57805743 original size:39 final size:39
Alignment explanation
Indices: 57805700--57805819 Score: 186
Period size: 39 Copynumber: 3.1 Consensus size: 39
57805690 GGACTTTAGC
* * * *
57805700 CCGGACATATTTCCAGCACGTAGCCTGTGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
57805739 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
**
57805778 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
57805817 CCG
1 CCG
57805820 AATACACATC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
Found at i:57811755 original size:48 final size:48
Alignment explanation
Indices: 57811684--57811779 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
57811674 TTGTTGTAGG
* *
57811684 TAAATTCTACGAATGGTAAATACTTTTTCCAATTACCTTGGAACTCAA
1 TAAATTCTACGAACGGTAAATACTTTTTCCAATTACCTTAGAACTCAA
57811732 TAAATTCTACGAACGGTAAATACTTTTTCCAATTACCTTAGAACTCAA
1 TAAATTCTACGAACGGTAAATACTTTTTCCAATTACCTTAGAACTCAA
57811780 GGACACAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (48 bp):
TAAATTCTACGAACGGTAAATACTTTTTCCAATTACCTTAGAACTCAA
Found at i:57815949 original size:27 final size:27
Alignment explanation
Indices: 57815904--57816274 Score: 519
Period size: 27 Copynumber: 13.8 Consensus size: 27
57815894 AATACTTTAG
* *
57815904 TTTACAGAACTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* **
57815931 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
**
57815958 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* * *
57815985 TTTATAAAATTACTGTTTTACCCTCAA
1 TTTACAAAATTACTATTTTACCCTCGA
* *
57816012 TTTATAAAATTACTATTTTACCCTCAA
1 TTTACAAAATTACTATTTTACCCTCGA
57816039 TTTACAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* *
57816066 TTTAC-AAATTACTGTTTTACCCTCAA
1 TTTACAAAATTACTATTTTACCCTCGA
57816092 TTTACAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* *
57816119 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* *
57816146 TTGACAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
* * * *
57816173 TTGATAGAATTACTATTTTACCCTCAA
1 TTTACAAAATTACTATTTTACCCTCGA
* *
57816200 TTGACAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
57816227 TTTACAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTATTTTACCCTCGA
57816254 TTTACAAAATTACTATTTTAC
1 TTTACAAAATTACTATTTTAC
57816275 TATAATATTC
Statistics
Matches: 319, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
26 24 0.08
27 295 0.92
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
TTTACAAAATTACTATTTTACCCTCGA
Found at i:57817624 original size:46 final size:46
Alignment explanation
Indices: 57817571--57817742 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
57817561 TAGGCATCCA
* *
57817571 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCGTCCG
*** * * * *
57817617 AACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCAAGTTC-ACTTATGGATGC-AAGCGTCCG
* * *
57817664 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCGTCC-G
*
57817710 AGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
57817743 GCGAGTTACA
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
45 2 0.02
46 65 0.64
47 35 0.34
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCGTCCG
Found at i:57817716 original size:93 final size:93
Alignment explanation
Indices: 57817561--57817734 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
57817551 CTGGGATATT
* *
57817561 TAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTG
1 TAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTG
57817626 AGTTGAGTCCAAGTTCGAGAGATGTAAC
66 AGTTGAGTCCAAGTTCGAGAGATGTAAC
* * *
57817654 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAGCTCGTT
1 TAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTT
57817718 GAGTTGAGTCCAAGTTC
65 GAGTTGAGTCCAAGTTC
57817735 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
TAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTG
AGTTGAGTCCAAGTTCGAGAGATGTAAC
Found at i:57819074 original size:27 final size:27
Alignment explanation
Indices: 57819044--57819104 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
57819034 GGGCGTTACA
* *
57819044 TTTACCCTCGATTTACAGAATTACCGT
1 TTTACCCTCGATTTACAAAATTACCAT
* *
57819071 TTTACCTTCGATTTATAAAATTACCAT
1 TTTACCCTCGATTTACAAAATTACCAT
57819098 TTTACCC
1 TTTACCC
57819105 CTAGGGTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.41
Consensus pattern (27 bp):
TTTACCCTCGATTTACAAAATTACCAT
Found at i:57819457 original size:33 final size:32
Alignment explanation
Indices: 57819408--57819471 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
57819398 CTCGCTGCAA
* *
57819408 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
57819441 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
57819472 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:57819485 original size:27 final size:26
Alignment explanation
Indices: 57819433--57819491 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
57819423 ACATATATAT
*
57819433 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
57819459 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
57819486 ATATCT
1 ATATCT
57819492 TGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:57819642 original size:6 final size:6
Alignment explanation
Indices: 57819611--57819809 Score: 113
Period size: 6 Copynumber: 32.3 Consensus size: 6
57819601 TTGCTTTCAC
* * *
57819611 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
57819660 -TTACCTG ATACTG ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
57819710 GTTTTG ATTC-G GTTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
57819760 ATTCTG ATTCTA ATTTTG ATTCTG ATTCTA ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
57819808 AT
1 AT
57819810 AATGTTTGTT
Statistics
Matches: 144, Mismatches: 32, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
5 12 0.08
6 113 0.78
7 12 0.08
8 7 0.05
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:57819643 original size:19 final size:19
Alignment explanation
Indices: 57819621--57819678 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
57819611 ATTCTGATTT
57819621 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
57819640 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
57819652 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
57819671 TGATTCTG
1 TGATTCTG
57819679 ATTTTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:57819646 original size:31 final size:31
Alignment explanation
Indices: 57819611--57819783 Score: 265
Period size: 31 Copynumber: 5.6 Consensus size: 31
57819601 TTGCTTTCAC
57819611 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
57819642 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
57819673 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
57819704 ATTCTGGTTTTGATTCGGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
57819735 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
57819766 ATTCTAATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
57819784 ATTCTAATTC
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:57832957 original size:27 final size:26
Alignment explanation
Indices: 57832909--57832968 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57832899 GCGAGGCTGC
*
57832909 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57832936 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57832962 CAGATAT
1 CAGATAT
57832969 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57833337 original size:11 final size:11
Alignment explanation
Indices: 57833321--57833377 Score: 63
Period size: 11 Copynumber: 5.7 Consensus size: 11
57833311 TGGGCCCATT
57833321 GGCCCATTTTC
1 GGCCCATTTTC
57833332 GGCCCA--TT-
1 GGCCCATTTTC
57833340 GGCCCATTTTC
1 GGCCCATTTTC
57833351 GGCCCA--TT-
1 GGCCCATTTTC
*
57833359 GGCCCGTTTTC
1 GGCCCATTTTC
57833370 GGCCCATT
1 GGCCCATT
57833378 AAGCCCAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
8 11 0.29
9 4 0.11
10 4 0.11
11 19 0.50
ACGTcount: A:0.09, C:0.37, G:0.23, T:0.32
Consensus pattern (11 bp):
GGCCCATTTTC
Found at i:57833337 original size:19 final size:19
Alignment explanation
Indices: 57833313--57833377 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
57833303 TACCAAAGTG
57833313 GGCCCATTGGCCCATTTTC
1 GGCCCATTGGCCCATTTTC
57833332 GGCCCATTGGCCCATTTTC
1 GGCCCATTGGCCCATTTTC
*
57833351 GGCCCATTGGCCCGTTTTC
1 GGCCCATTGGCCCATTTTC
57833370 GGCCCATT
1 GGCCCATT
57833378 AAGCCCAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.09, C:0.37, G:0.23, T:0.31
Consensus pattern (19 bp):
GGCCCATTGGCCCATTTTC
Found at i:57840487 original size:8 final size:8
Alignment explanation
Indices: 57840474--57840516 Score: 59
Period size: 8 Copynumber: 5.0 Consensus size: 8
57840464 TACCAAAGTG
57840474 GGCCCATT
1 GGCCCATT
57840482 GGCCCATT
1 GGCCCATT
57840490 GGCCCATTTTT
1 GGCCCA---TT
57840501 GGCCCATT
1 GGCCCATT
57840509 GGCCCATT
1 GGCCCATT
57840517 TTCGACCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 24 0.75
11 8 0.25
ACGTcount: A:0.12, C:0.35, G:0.23, T:0.30
Consensus pattern (8 bp):
GGCCCATT
Found at i:57840504 original size:19 final size:19
Alignment explanation
Indices: 57840480--57840518 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
57840470 AGTGGGCCCA
57840480 TTGGCCCATTGGCCCATTT
1 TTGGCCCATTGGCCCATTT
57840499 TTGGCCCATTGGCCCATTT
1 TTGGCCCATTGGCCCATTT
57840518 T
1 T
57840519 CGACCTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.31, G:0.21, T:0.38
Consensus pattern (19 bp):
TTGGCCCATTGGCCCATTT
Found at i:57844168 original size:15 final size:15
Alignment explanation
Indices: 57844148--57844205 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
57844138 TATGAAATTC
57844148 TATCTTAGATTTCTT
1 TATCTTAGATTTCTT
*
57844163 TATCTTTGATTTCTT
1 TATCTTAGATTTCTT
* * *
57844178 TGTCCTAGACATT-TT
1 TATCTTAGA-TTTCTT
*
57844193 TATCTTAGTTTTC
1 TATCTTAGATTTC
57844206 ATGTCATCTC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
14 2 0.06
15 28 0.88
16 2 0.06
ACGTcount: A:0.17, C:0.16, G:0.09, T:0.59
Consensus pattern (15 bp):
TATCTTAGATTTCTT
Found at i:57845740 original size:13 final size:13
Alignment explanation
Indices: 57845718--57845750 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
57845708 AAGGGTTTAT
57845718 TTAT-TAAACTAA
1 TTATCTAAACTAA
57845730 TTATCTAAACTAA
1 TTATCTAAACTAA
*
57845743 TTAACTAA
1 TTATCTAA
57845751 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:57847274 original size:17 final size:17
Alignment explanation
Indices: 57847252--57847290 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
57847242 TTAGCAATGA
57847252 TTATGAGATAGTGGAGT
1 TTATGAGATAGTGGAGT
57847269 TTATGAGATAGTGGAGT
1 TTATGAGATAGTGGAGT
57847286 TTATG
1 TTATG
57847291 TGAAAACTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.38
Consensus pattern (17 bp):
TTATGAGATAGTGGAGT
Found at i:57856639 original size:37 final size:37
Alignment explanation
Indices: 57856577--57856685 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
57856567 AGCTCAGACG
* *
57856577 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
57856614 AAATCTCCATACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
57856651 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
57856686 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57856957 original size:48 final size:48
Alignment explanation
Indices: 57856831--57857015 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
57856821 GCACATCGCC
*
57856831 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
57856881 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
57856929 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
57856977 TACATTTTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
57857016 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:57857020 original size:98 final size:98
Alignment explanation
Indices: 57856831--57857014 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 98
57856821 GCACATCGCC
*
57856831 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
57856896 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
57856929 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
*
57856992 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
57857015 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 50 0.62
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:57857064 original size:47 final size:47
Alignment explanation
Indices: 57856937--57857178 Score: 272
Period size: 47 Copynumber: 5.1 Consensus size: 47
57856927 CATACATATT
* * * * **
57856937 TCACATTAGCCATTCGGCTTTACCACATATA--CATTTCTCATACATTTT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TC--ACATTCA
* * * *
57856985 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * *
57857032 CCACATTGGCCATTCGGCCTTATAACACATATGCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57857079 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
57857126 TCACATTGGCCATTCGGCCTTAACTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57857173 TCACAT
1 TCACAT
57857179 AAAATCCTAA
Statistics
Matches: 170, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
47 133 0.78
48 31 0.18
49 2 0.01
50 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:57857179 original size:25 final size:25
Alignment explanation
Indices: 57857100--57857179 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
57857090 ATTCGGCCTT
**
57857100 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
57857125 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
57857147 AACTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
57857172 ATCACATA
1 ATCACATA
57857180 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 8 0.21
23 6 0.16
24 6 0.16
25 18 0.47
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:57862288 original size:43 final size:43
Alignment explanation
Indices: 57862222--57862378 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
57862212 AGCTCGTACA
**
57862222 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACATCCCAGACAAGGTCTTACATGTAATCACATATCG
* *
57862265 ATGCC-ACTATCCCAGACAAGGTCTTACTTG-AACTCATATAT-G
1 ATGCCAAC-ATCCCAGACAAGGTCTTACATGTAA-TCACATATCG
* ** * * *
57862307 ATGCCGATGTCCCAAACAAGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACATCCCAGACAAGGTCTTACATGT-AATCACATATCG
* * *
57862351 ATGCCAGCATCCCAGACATGGCCTTACA
1 ATGCCAACATCCCAGACAAGGTCTTACA
57862379 CAAAAACACA
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 28 0.31
43 38 0.42
44 24 0.27
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACATCCCAGACAAGGTCTTACATGTAATCACATATCG
Found at i:57875454 original size:22 final size:22
Alignment explanation
Indices: 57875426--57875500 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
57875416 CACTAAGTCA
57875426 ACAGGACGGCTCAACG-CTGTAG
1 ACAGGACGGCTCAACGTC-GTAG
* *
57875448 ACAGGACGACTCAATGTCGTAG
1 ACAGGACGGCTCAACGTCGTAG
* *
57875470 ACAGGA-GGACTCAACGTCATCG
1 ACAGGACGG-CTCAACGTCGTAG
57875492 ACAGGACGG
1 ACAGGACGG
57875501 ATAAAGGTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.02
22 40 0.91
23 3 0.07
ACGTcount: A:0.31, C:0.25, G:0.31, T:0.13
Consensus pattern (22 bp):
ACAGGACGGCTCAACGTCGTAG
Found at i:57877356 original size:47 final size:46
Alignment explanation
Indices: 57877281--57877408 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 46
57877271 GCGAATAATG
* *
57877281 CCTTGATTTGGCTACGGGCCATGATATAGGTA-TTCAGAGAGGAGTTA
1 CCTTGATTTGGCTACGGG-CATGGTATAGGTACTCCAG-GAGGAGTTA
* **
57877328 CCTTGATTTGGCTACTGGGCATGGTATAGATACTCCAGGATTAGTTA
1 CCTTGATTTGGCTAC-GGGCATGGTATAGGTACTCCAGGAGGAGTTA
* * *
57877375 ACTTGACTTGACTACGGGCTATGGTATAGGTACT
1 CCTTGATTTGGCTACGGGC-ATGGTATAGGTACT
57877409 TATCGATTGA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 4 0.06
47 58 0.84
48 7 0.10
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (46 bp):
CCTTGATTTGGCTACGGGCATGGTATAGGTACTCCAGGAGGAGTTA
Found at i:57881990 original size:22 final size:23
Alignment explanation
Indices: 57881924--57881991 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
57881914 CTAGCAGAAT
*
57881924 ACCATAAAGGCCAAATCA-AAGTAC
1 ACCATAAAGG-AAAATCAGAA-TAC
*
57881948 ACCATAAGGGAAAAATCAGAATAC
1 ACCATAAAGG-AAAATCAGAATAC
*
57881972 ACCATAAAGG-ACATCAGAAT
1 ACCATAAAGGAAAATCAGAAT
57881992 GCCACCTAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
22 9 0.24
24 27 0.71
25 2 0.05
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (23 bp):
ACCATAAAGGAAAATCAGAATAC
Found at i:57883886 original size:38 final size:38
Alignment explanation
Indices: 57883843--57883918 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
57883833 TTCATCCTTT
57883843 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
57883881 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
57883919 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:57887015 original size:27 final size:28
Alignment explanation
Indices: 57886931--57887025 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
57886921 CATGAGATTG
* * * *
57886931 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
57886960 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57886988 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57887015 GCACTGAGTGT
1 GCACTAAGTGT
57887026 ACGGACTTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
29 18 0.30
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57887039 original size:27 final size:27
Alignment explanation
Indices: 57886959--57887041 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57886949 TAAATTGTAC
* * *
57886959 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTACGA-CTTGAATATAT
* * *
57886987 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTACGACTTGAATATAT
*
57887014 AGCACTGAGTGTACGGACTT-AATATAT
1 AGCACTAAGTGTAC-GACTTGAATATAT
57887041 A
1 A
57887042 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTACGACTTGAATATAT
Found at i:57888711 original size:40 final size:40
Alignment explanation
Indices: 57888617--57888761 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57888607 TACTCGAATG
*
57888617 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
57888658 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
57888698 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
57888738 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
57888762 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:57891527 original size:28 final size:31
Alignment explanation
Indices: 57891459--57891518 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
57891449 TGTTGAAAGT
57891459 AAGTATAATTATGATGACTTAAATGTTCACA
1 AAGTATAATTATGATGACTTAAATGTTCACA
57891490 AAGTATAATTATGATGACTTAAATGTTCA
1 AAGTATAATTATGATGACTTAAATGTTCA
57891519 ATATTAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (31 bp):
AAGTATAATTATGATGACTTAAATGTTCACA
Found at i:57892963 original size:27 final size:27
Alignment explanation
Indices: 57892853--57893081 Score: 214
Period size: 27 Copynumber: 8.6 Consensus size: 27
57892843 TTAATTTACC
* * *
57892853 AAATTACTGAAATACCC-CTAGTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
57892879 AAATTACC-AAAGTACCCCCGGTTTCTA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* *
57892906 AAATTACCGAAATATCGTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
57892932 AAATTATTGAAATACCATCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
57892959 AAATTACC-AAATTACCCCCGATTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* * *
57892986 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
57893013 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
**
57893040 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
57893067 AAATTACTGAAATAC
1 AAATTACCGAAATAC
57893082 TTCTATAAGA
Statistics
Matches: 163, Mismatches: 34, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
25 3 0.02
26 36 0.22
27 118 0.72
28 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:57893080 original size:81 final size:80
Alignment explanation
Indices: 57892853--57893080 Score: 269
Period size: 81 Copynumber: 2.9 Consensus size: 80
57892843 TTAATTTACC
* * * * *
57892853 AAATTACTGAAATACCC-CTAGTTGTAAAATTACCAAAGTACCCCCGGTTTCTAAAATTACCGAA
1 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCGAA
*
57892917 ATATCGTCGATTGTA
66 ATATCCTCGATTGTA
* * * * *
57892932 AAATTATTGAAATACCATCGACTTGTAAAATTACCAAATTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCGAA
*
57892997 ATATCCTTGATTTGTA
66 ATATCCTCGA-TTGTA
* * * * * * *
57893013 AAATTACCGAAATACCCTCAATTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCGAA
57893078 ATA
66 ATA
57893081 CTTCTATAAG
Statistics
Matches: 125, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
79 15 0.12
80 49 0.39
81 61 0.49
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCGAA
ATATCCTCGATTGTA
Found at i:57893245 original size:81 final size:81
Alignment explanation
Indices: 57893091--57893264 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 81
57893081 CTTCTATAAG
*** * *
57893091 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCTTTGATTTATAAAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGAAATACCCTTGATTTACAAAATTACC
*** **
57893156 ATTTTACCCTAGATTT
66 AAAATACCCTAGATCA
* *
57893172 ATAGAATTACCATTTTACGCTCGATTTACA-AATT-TACTGAAATACCCTTGGTTTACAAAATTA
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTAT-C-GAAATACCCTTGATTTACAAAATTA
*
57893235 CCAAAATACCCTCGATCA
64 CCAAAATACCCTAGATCA
*
57893253 ATAAAATTACCA
1 ATAGAATTACCA
57893265 AAATACCCCT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.06
81 71 0.92
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGAAATACCCTTGATTTACAAAATTACC
AAAATACCCTAGATCA
Found at i:57893307 original size:27 final size:27
Alignment explanation
Indices: 57892853--57893326 Score: 142
Period size: 27 Copynumber: 17.6 Consensus size: 27
57892843 TTAATTTACC
** *
57892853 AAATTACTGAAATACCCCT-AGTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
57892879 AAATTACCAAAGTACCCCCGGTTTCTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
57892906 AAATTACCGAAATA-TCGTCGA-TTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
57892932 AAATTATTGAAATA-CCATCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
57892959 AAATTACCAAATTACCCCCGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
57892986 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
57893013 AAATTACCGAAATA-CCCTCAATTTGCA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
57893040 AAATTACTAAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
** ** **
57893067 AAATTACTGAAATACTTCT-ATAAGATA
1 AAATTACCAAAATACCCCTGATTTG-TA
* *** **
57893094 GAATTACCATTTTA-CCCTCGATTTACA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * **** ** *
57893121 GAATTATCGTTTTACCTTTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*** *
57893148 AAATTACCATTTTA-CCCTAGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *** * **
57893175 GAATTACCATTTTA-CGCTCGATTTACA
1 AAATTACCAAAATACCCCT-GATTTGTA
* ** * * **
57893202 AATTTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
***
57893229 AAATTACCAAAATA-CCCTCGATCAATA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
57893256 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
57893283 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* **
57893310 GAACGACCAAAATACCC
1 AAATTACCAAAATACCC
57893327 TTGTAGGGTA
Statistics
Matches: 336, Mismatches: 98, Indels: 27
0.73 0.21 0.06
Matches are distributed among these distances:
26 50 0.15
27 272 0.81
28 14 0.04
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:57893342 original size:54 final size:54
Alignment explanation
Indices: 57893315--57893460 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 54
57893305 TTGTGGAACG
* * *
57893315 ACCAAAATACCCTTGTAGGGTAGAATTATCGCAATACCCCTATAGGGTAGAAGT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAGT
* * * *
57893369 ACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAGT
* * *
57893423 ACTAAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 ACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACC
57893461 TTGTGGGGTA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (54 bp):
ACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAGT
Found at i:57893350 original size:27 final size:26
Alignment explanation
Indices: 57893319--57893477 Score: 158
Period size: 27 Copynumber: 6.0 Consensus size: 26
57893309 GGAACGACCA
*
57893319 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
* * *
57893346 CAATACCCCTATAGGGTAGAAGTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
57893373 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTAC-G
* * *
57893400 AAATACCCCTATAAGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTAC-G
*
57893427 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
* * * *
57893454 AGATA-CCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
57893478 CATTTTGCCC
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 1 0.01
26 15 0.14
27 93 0.85
28 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (26 bp):
AAATACCCCTGTAGGGTAGAATTACG
Found at i:57893919 original size:19 final size:19
Alignment explanation
Indices: 57893897--57893954 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
57893887 TTCTAATTTT
57893897 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
57893916 TGATTCTG--A--T--TTC
1 TGATTCTGTTACCTGATAC
57893929 -GATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
57893947 TGATTCTG
1 TGATTCTG
57893955 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 7 0.23
13 2 0.07
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 2 0.07
19 15 0.50
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:57893924 original size:6 final size:6
Alignment explanation
Indices: 57893909--57893996 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
57893899 ATTCTGTTAC
* *
57893909 CTGATA CTGATT CTGATT -TCGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CT-GATT CTGATT --CTGATT CTGATT CTGATT
* *
57893958 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
57893997 AGTTCTTATA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 55 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:57893933 original size:31 final size:31
Alignment explanation
Indices: 57893897--57893996 Score: 157
Period size: 31 Copynumber: 3.2 Consensus size: 31
57893887 TTCTAATTTT
57893897 TGATTCTGTTACCTGATACTGATTCTGATT-
1 TGATTCTGTTACCTGATACTGATTCTGATTC
57893927 TCGATTCTGTTACCTGATACTGATTCTGATTC
1 T-GATTCTGTTACCTGATACTGATTCTGATTC
* * *
57893959 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
57893990 TGATTCT
1 TGATTCT
57893997 AGTTCTTATA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
30 1 0.02
31 63 0.97
32 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:57896070 original size:27 final size:27
Alignment explanation
Indices: 57895958--57896267 Score: 283
Period size: 27 Copynumber: 11.6 Consensus size: 27
57895948 TTAGTTTACC
* *
57895958 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
57895984 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* **
57896011 AAATTACCGAAATACTGTCGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
57896037 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
57896064 ACATTACCT-AAATACCCTC-AGTTTGCA
1 AAATTA-CTGAAATACCCTCGA-TTTGTA
*
57896091 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
57896118 AAATTACCGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
57896145 AAATTAC-CAAAGTA-GCTCCAATTTATA
1 AAATTACTGAAA-TACCCT-CGATTTGTA
** *
57896172 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** * *
57896199 AAATTACCGAAATACAATCAATTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
57896226 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
57896253 AAATTACTGAAATAC
1 AAATTACTGAAATAC
57896268 TTCTATAAGA
Statistics
Matches: 229, Mismatches: 43, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
25 3 0.01
26 40 0.17
27 174 0.76
28 12 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:57896309 original size:27 final size:27
Alignment explanation
Indices: 57896279--57896393 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 27
57896269 TCTATAAGAT
57896279 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*** * *
57896306 AGAATTATTGTTTTACCCTTGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
57896333 AGAATTACCATTTTACCCTAGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
57896360 AGAATTACCATTTTACGCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
57896387 AAAATTA
1 AGAATTA
57896394 TTGATATACC
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:57896429 original size:27 final size:27
Alignment explanation
Indices: 57896399--57896485 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
57896389 AATTATTGAT
*
57896399 ATACCCTTGGTTTACAAAATTACCAAA
1 ATACCCTTGGTTTATAAAATTACCAAA
* **
57896426 ATACCCTTGATCAATAAAATTACCAAA
1 ATACCCTTGGTTTATAAAATTACCAAA
* * *
57896453 ATACCCCTGGTTTGTAAAATTACGAAA
1 ATACCCTTGGTTTATAAAATTACCAAA
57896480 ATACCC
1 ATACCC
57896486 CTGATTTTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
ATACCCTTGGTTTATAAAATTACCAAA
Found at i:57896431 original size:81 final size:81
Alignment explanation
Indices: 57896277--57896450 Score: 222
Period size: 81 Copynumber: 2.1 Consensus size: 81
57896267 CTTCTATAAG
* * * * *
57896277 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATTGTTTTACCCTTGATTTATAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATTGATATACCCTTGATTTACAAAATTACC
*** **
57896342 ATTTTACCCTAGATTT
66 AAAATACCCTAGATCA
* *
57896358 ATAGAATTACCATTTTACGCTCGATTTACAAAATTATTGATATACCCTTGGTTTACAAAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATTGATATACCCTTGATTTACAAAATTACC
*
57896423 AAAATACCCTTGATCA
66 AAAATACCCTAGATCA
*
57896439 ATAAAATTACCA
1 ATAGAATTACCA
57896451 AAATACCCCT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTATTGATATACCCTTGATTTACAAAATTACC
AAAATACCCTAGATCA
Found at i:57896486 original size:27 final size:27
Alignment explanation
Indices: 57896399--57896515 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 27
57896389 AATTATTGAT
* * *
57896399 ATACCCTTGGTTTACAAAATTACCAAA
1 ATACCCCTGATTTATAAAATTACCAAA
* **
57896426 ATACCCTTGATCAATAAAATTACCAAA
1 ATACCCCTGATTTATAAAATTACCAAA
* * *
57896453 ATACCCCTGGTTTGTAAAATTACGAAA
1 ATACCCCTGATTTATAAAATTACCAAA
* ** * *
57896480 ATACCCCTGATTTTTGGAATTATCGAA
1 ATACCCCTGATTTATAAAATTACCAAA
57896507 ATACCCCTG
1 ATACCCCTG
57896516 TAGGGTAGAA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
ATACCCCTGATTTATAAAATTACCAAA
Found at i:57896526 original size:27 final size:27
Alignment explanation
Indices: 57896496--57896637 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
57896486 CTGATTTTTG
*
57896496 GAATTATCGAAATACCCCTGTAGGGTA
1 GAATTACCGAAATACCCCTGTAGGGTA
* *
57896523 GAATTATCGCAATACCCCTGTAGGGTA
1 GAATTACCGAAATACCCCTGTAGGGTA
57896550 GAATTACCGAAATACCCCTGTAGGGTA
1 GAATTACCGAAATACCCCTGTAGGGTA
** * *
57896577 GAATTACTAAAATACCCTTGTAGGGTG
1 GAATTACCGAAATACCCCTGTAGGGTA
* * *
57896604 GAATTACCGAGATA-CCTTGTGGGGTA
1 GAATTACCGAAATACCCCTGTAGGGTA
*
57896630 AAATTACC
1 GAATTACC
57896638 ATTTTTCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 17 0.17
27 85 0.83
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
GAATTACCGAAATACCCCTGTAGGGTA
Found at i:57896528 original size:54 final size:54
Alignment explanation
Indices: 57896443--57896636 Score: 180
Period size: 54 Copynumber: 3.6 Consensus size: 54
57896433 TGATCAATAA
* ** * *** *
57896443 AATTACCAAAATACCCCTGGT-TTGTAAAATTACGAAAATACCCCTG-ATTTTTGG
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACGAAAATACCCCTGTA-GGGTAG
* *
57896497 AATTATCGAAATACCCCTGTAGGGTAGAATTATCG-CAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTA-CGAAAATACCCCTGTAGGGTAG
* * *
57896551 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACGAAAATACCCCTGTAGGGTAG
* * * *
57896605 AATTACCGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
57896637 CATTTTTCCC
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
53 19 0.16
54 95 0.81
55 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACGAAAATACCCCTGTAGGGTAG
Found at i:57897095 original size:31 final size:31
Alignment explanation
Indices: 57897057--57897154 Score: 142
Period size: 31 Copynumber: 3.2 Consensus size: 31
57897047 CTGATTTTTA
* *
57897057 ATTCTGTTACCTGATAGTAATTCTGATTTTG
1 ATTCTGTTACCTGATACTAATTCTGATTCTG
*
57897088 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTAATTCTGATTCTG
* * *
57897119 ATTCTGTCACCTAATTCTAATTCTGATTCTG
1 ATTCTGTTACCTGATACTAATTCTGATTCTG
57897150 ATTCT
1 ATTCT
57897155 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTAATTCTGATTCTG
Found at i:57897107 original size:6 final size:6
Alignment explanation
Indices: 57897076--57897163 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
57897066 CCTGATAGTA
* *
57897076 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
57897125 -TCACCTA ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
57897164 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:57900449 original size:17 final size:17
Alignment explanation
Indices: 57900415--57900446 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57900405 GCAAGGCCTA
57900415 TTTTCCTTTTATCTAAT
1 TTTTCCTTTTATCTAAT
57900432 TTTTCCTTTTA-CTAA
1 TTTTCCTTTTATCTAA
57900447 ATTACACATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTCCTTTTATCTAAT
Found at i:57904184 original size:42 final size:42
Alignment explanation
Indices: 57904087--57904186 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
57904077 TAGGGTTACC
57904087 GAGACTAT-GTGTAAGACCATATCTGGAATATGGCATCAATAT
1 GAGACT-TCGTGTAAGACCATATCTGGAATATGGCATCAATAT
* * * * **
57904129 GAGGCTTCATGTAAGACCGTATCTGGGATATGGCATTGATAT
1 GAGACTTCGTGTAAGACCATATCTGGAATATGGCATCAATAT
*
57904171 GAGATTTCGTGTAAGA
1 GAGACTTCGTGTAAGA
57904187 ATATAGCTGG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (42 bp):
GAGACTTCGTGTAAGACCATATCTGGAATATGGCATCAATAT
Found at i:57907212 original size:46 final size:46
Alignment explanation
Indices: 57907162--57907287 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
57907152 TGGTTGAGCA
*
57907162 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
57907208 TCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
57907254 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57907288 GGGGCGGGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:57907534 original size:19 final size:20
Alignment explanation
Indices: 57907497--57907534 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57907487 ATAAGGTGGT
57907497 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
57907517 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
57907535 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:57909315 original size:48 final size:49
Alignment explanation
Indices: 57909104--57909328 Score: 162
Period size: 50 Copynumber: 4.6 Consensus size: 49
57909094 GTATAATGCT
* * * **** *
57909104 GATGCCATGTCCCAGACACGGTCTTACACT-G-GCTCATCCGTCAAGTC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCACTCATATACCATGTC
* * * * * *
57909151 GATGCCATGTCCCAAACATGGTCTTACACT-G-ACT-ATTGAAATCGAGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCACTCA-T-ATA-CCATGTC
* * *
57909200 GACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCCGTGTC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCACTCATATA-CCATGTC
*
57909250 GATGCCATGTCCCAGACATGGTCTTACAC-AGACAC-CACTATA-CATG-C
1 GATGCCATGTCCTAGACATGGTCTTACACTAG-CACTCA-TATACCATGTC
57909297 TGATGCCATGTCCTAGACATGGTCTTACACTA
1 -GATGCCATGTCCTAGACATGGTCTTACACTA
57909329 ACACATCTCG
Statistics
Matches: 144, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
46 1 0.01
47 33 0.23
48 31 0.22
49 35 0.24
50 40 0.28
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCACTCATATACCATGTC
Found at i:57909326 original size:98 final size:94
Alignment explanation
Indices: 57909095--57909328 Score: 247
Period size: 98 Copynumber: 2.4 Consensus size: 94
57909085 AAACATATGG
* * * *
57909095 TATA-ATGCTGATGCCATGTCCCAGACACGGTCTTACACT-GGCTCATCCGTCAAGTCGATGCCA
1 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGGCTCATACATCAAGTCGATGCCA
* * *
57909158 TGTCCCAAACATGGTCTTACACTGACTAT
66 TGTCCCAAACATGGTCTTACACAGACCAC
* * * * * * **
57909187 TGAAATCGAGGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCCGTGTCGA
1 T-ATA-C-ATGCTGATGCCATGTCCTAGACATGGTCTTACACTAG-GCTCATACAT-CAAGTCGA
*
57909252 TGCCATGTCCCAGACATGGTCTTACACAGACACCAC
61 TGCCATGTCCCAAACATGGTCTTACACAG--ACCAC
57909288 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTA
1 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTA
57909329 ACACATCTCG
Statistics
Matches: 113, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
92 1 0.01
93 2 0.02
96 30 0.27
97 1 0.01
98 39 0.35
99 34 0.30
100 2 0.02
101 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (94 bp):
TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGGCTCATACATCAAGTCGATGCCA
TGTCCCAAACATGGTCTTACACAGACCAC
Found at i:57909343 original size:99 final size:97
Alignment explanation
Indices: 57909095--57909345 Score: 255
Period size: 99 Copynumber: 2.6 Consensus size: 97
57909085 AAACATATGG
* * * *
57909095 TATA-ATGCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCATC-CG--T-CAAGTCGATG
1 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCTCGTATCCGAGTCGATG
* * *
57909155 CCATGTCCCAAACATGGTCTTACACTGACTAT
66 CCATGTCCCAAACATGGTCTTACACAGACCAC
* * * * * *
57909187 TGAAATCGAGGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCTC-TCAT-ATATCCGTGTC
1 T-ATA-C-ATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATC-TCGTATCCGAGTC
*
57909250 GATGCCATGTCCCAGACATGGTCTTACACAGACACCAC
62 GATGCCATGTCCCAAACATGGTCTTACACAG--ACCAC
* *
57909288 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAACACATCTCGTATCCGA
1 TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCTCGTATCCGA
57909346 TGCATTCCCC
Statistics
Matches: 124, Mismatches: 22, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
92 1 0.01
93 2 0.02
95 2 0.02
96 34 0.27
98 37 0.30
99 42 0.34
100 2 0.02
101 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (97 bp):
TATACATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCTCGTATCCGAGTCGATG
CCATGTCCCAAACATGGTCTTACACAGACCAC
Found at i:57909382 original size:46 final size:45
Alignment explanation
Indices: 57909298--57909514 Score: 143
Period size: 46 Copynumber: 4.7 Consensus size: 45
57909288 TATACATGCT
* * *
57909298 GATGCCATGTCCTAGACATGGTCTTACACTAAC-ACATCTCGTA-TCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTACATCTCG-AGGCC
*
57909344 GATGCAT-TCCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCT
1 GATGCATGT-CCCAGACATGTCTTACACTAGC-TACATCTCGAGGCC
* * * * * * *
57909390 GATGCATGTCCTAGACATATCTTACACTAGCTCCCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-ACATCTCGAGGCC
* * * * * * **
57909436 GATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTGGTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-ACATCTCGAGGCC
* *
57909484 GATGCATGTCCTAGACATGCCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
57909515 AGACAAATAG
Statistics
Matches: 137, Mismatches: 26, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
44 13 0.09
45 13 0.09
46 64 0.47
47 25 0.18
48 22 0.16
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTACATCTCGAGGCC
Found at i:57910764 original size:45 final size:46
Alignment explanation
Indices: 57910700--57910866 Score: 155
Period size: 46 Copynumber: 3.7 Consensus size: 46
57910690 TATACGTGCT
* * *
57910700 GATGCCATGTCCTAGACATGGTTTTACACTAAC-ACATATTGTA-GCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAACTACATATCG-AGGCC
* * *
57910746 GATGCTTGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAAC-TACATATCGAGGCC
* * * *
57910792 GATGCATGTCCCAGACAT-GTCTCACACTAGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTAAC-TACATATCGAGGCC
* *
57910838 GATACATGTCCCAGACGT-GTCTTACACTA
1 GATGCATGTCCCAGACATGGTCTTACACTA
57910867 GCTCTCGTCT
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
44 11 0.10
45 13 0.12
46 82 0.77
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTAACTACATATCGAGGCC
Found at i:57910795 original size:46 final size:46
Alignment explanation
Indices: 57910743--57910869 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
57910733 ACATATTGTA
*
57910743 GCCGATGCTTGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
*
57910789 GCCGATGCATGTCCCAGACATGTCTCACACTAGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* * *
57910835 GCTGATACATGTCCCAGACGTGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
57910870 CTCGTCTCAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:57913981 original size:50 final size:50
Alignment explanation
Indices: 57913895--57913991 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
57913885 TGTTCATCGG
** *
57913895 TCCACAGTCATCTCGTGCGACCTGTGTGACCTTATCAGATCAATACTAGA
1 TCCACAGTCATCTCGTGCGACCTGTGCAACCTTATCAGAACAATACTAGA
*
57913945 TCCACAGTCGTCTCGTGCGACCTGTGCAATCC-TATCAGAACAATACT
1 TCCACAGTCATCTCGTGCGACCTGTGCAA-CCTTATCAGAACAATACT
57913992 TCCTCCATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 40 0.95
51 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (50 bp):
TCCACAGTCATCTCGTGCGACCTGTGCAACCTTATCAGAACAATACTAGA
Found at i:57914153 original size:34 final size:34
Alignment explanation
Indices: 57914114--57914178 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
57914104 AAAGTATATC
* *
57914114 AGTTAAATCACAGTCGTACAATCACAGTCAAGTT
1 AGTTAAATCACAATCATACAATCACAGTCAAGTT
*
57914148 AGTTAAATTACAATCATACAATCACAGTCAA
1 AGTTAAATCACAATCATACAATCACAGTCAA
57914179 ATCAATCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (34 bp):
AGTTAAATCACAATCATACAATCACAGTCAAGTT
Found at i:57914266 original size:27 final size:28
Alignment explanation
Indices: 57914245--57914520 Score: 163
Period size: 27 Copynumber: 10.2 Consensus size: 28
57914235 TTTACCCTAT
57914245 AGGGGTATTTCGGTAATTTTA-CAAATC
1 AGGGGTATTTCGGTAATTTTACCAAATC
*
57914272 GGGGGTATTTCGGTAATTTTA-CAAATC
1 AGGGGTATTTCGGTAATTTTACCAAATC
* * *
57914299 GGGGGTGTTTCGATAATTTTA-CAAA-C
1 AGGGGTATTTCGGTAATTTTACCAAATC
* * *
57914325 CGGGGATATTTTGATTAA-TTTA-CAAA-C
1 AGGGG-TATTTCG-GTAATTTTACCAAATC
* ** *
57914352 TAAGGGTATTTTTGTAACTTTA-CAAATC
1 -AGGGGTATTTCGGTAATTTTACCAAATC
* * *
57914380 AAGGGTATTTCAGTAATTTTA--TAATC
1 AGGGGTATTTCGGTAATTTTACCAAATC
* *
57914406 TAGGGGTATTTTGGTAATTTTA-TAAA-C
1 -AGGGGTATTTCGGTAATTTTACCAAATC
* ** *
57914433 TGGGGGTATTTTAGTAATTTTA-CAAA-A
1 -AGGGGTATTTCGGTAATTTTACCAAATC
*
57914460 AGGGGGTATTTTGGTAATTTTA-CAAA-C
1 A-GGGGTATTTCGGTAATTTTACCAAATC
* *
57914487 TAGGGGTATTTCGATAATTTTA-CAAACC
1 -AGGGGTATTTCGGTAATTTTACCAAATC
57914515 AGGGGT
1 AGGGGT
57914521 CTTAACGACC
Statistics
Matches: 211, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
26 12 0.06
27 188 0.89
28 11 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (28 bp):
AGGGGTATTTCGGTAATTTTACCAAATC
Found at i:57914347 original size:81 final size:81
Alignment explanation
Indices: 57914244--57914513 Score: 287
Period size: 81 Copynumber: 3.3 Consensus size: 81
57914234 TTTTACCCTA
* * ** *
57914244 TAGGGGTATTTCGGTAATTTTACAAA-TCGGGGGTATTTCGGTAATTTTACAAATCGGGGGTGTT
1 TAGGGGTATTTTGATAATTTTACAAACT-GGGGGTATTTTAGTAATTTTACAAATCGGGGGTATT
57914308 TCGATAATTTTACAAAC
65 TCGATAATTTTACAAAC
* ** * * **
57914325 -CGGGGATATTTTGATTAA-TTTACAAACTAAGGGTATTTTTGTAACTTTACAAATCAAGGGTAT
1 TAGGGG-TATTTTGA-TAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATCGGGGGTAT
* *
57914388 TTC-AGTAATTTTATAATC
64 TTCGA-TAATTTTACAAAC
* * **
57914406 TAGGGGTATTTTGGTAATTTTATAAACTGGGGGTATTTTAGTAATTTTACAAAAAGGGGGTATTT
1 TAGGGGTATTTTGATAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATCGGGGGTATTT
* *
57914471 TGGTAATTTTACAAAC
66 CGATAATTTTACAAAC
*
57914487 TAGGGGTATTTCGATAATTTTACAAAC
1 TAGGGGTATTTTGATAATTTTACAAAC
57914514 CAGGGGTCTT
Statistics
Matches: 151, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
80 8 0.05
81 135 0.89
82 8 0.05
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGATAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATCGGGGGTATTT
CGATAATTTTACAAAC
Found at i:57914520 original size:54 final size:55
Alignment explanation
Indices: 57914245--57914520 Score: 255
Period size: 54 Copynumber: 5.1 Consensus size: 55
57914235 TTTACCCTAT
* * *
57914245 AGGGGTATTTCGGTAATTTTACAAA-TCGGGGGTATTTCG-GTAATTTTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTCGAGTAATTTTACAAACC
* * * * * * * *
57914299 GGGGGTGTTTCGATAATTTTACAAAC-CGGGGATATTTTGATTAA-TTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGG-TATTTCGAGTAATTTTACAAACC
* * * * * * *
57914353 AAGGGTATTTTTGTAACTTTACAAA-TCAAGGGTATTTC-AGTAATTTTATAATCT
1 AGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTCGAGTAATTTTACAAACC
* * * *
57914407 AGGGGTATTTTGGTAATTTTATAAACTGGGGGTATTT-TAGTAATTTTACAAA-A
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGAGTAATTTTACAAACC
57914460 AGGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGA-TAATTTTACAAACC
1 A-GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGAGTAATTTTACAAACC
57914515 AGGGGT
1 AGGGGT
57914521 CTTAACGACC
Statistics
Matches: 177, Mismatches: 34, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
53 9 0.05
54 159 0.90
55 9 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (55 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGAGTAATTTTACAAACC
Found at i:57930047 original size:12 final size:13
Alignment explanation
Indices: 57930023--57930051 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
57930013 GGGCTATAAC
57930023 TATTGCATTTATT
1 TATTGCATTTATT
57930036 TATTGC-TTTATT
1 TATTGCATTTATT
57930048 TATT
1 TATT
57930052 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:57932974 original size:20 final size:20
Alignment explanation
Indices: 57932949--57932988 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
57932939 AATTGAGGAA
57932949 CAAGTAACTGCTGTAGAAAC
1 CAAGTAACTGCTGTAGAAAC
57932969 CAAGTAACTGCTGTAGAAAC
1 CAAGTAACTGCTGTAGAAAC
57932989 ACAACTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
CAAGTAACTGCTGTAGAAAC
Found at i:57936204 original size:40 final size:40
Alignment explanation
Indices: 57936120--57936303 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
57936110 TTGAATGCTG
* * * *
57936120 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
57936159 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
57936200 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
57936240 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
57936280 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57936304 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:57936257 original size:80 final size:81
Alignment explanation
Indices: 57936120--57936300 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
57936110 TTGAATGCTG
* * *
57936120 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
57936184 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
57936200 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
57936261 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
57936280 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
57936301 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:57936324 original size:39 final size:39
Alignment explanation
Indices: 57936188--57936350 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 39
57936178 GGTATTTGTG
* * * **
57936188 CGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTG
1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGG-CATTGAA
* * **
57936228 CGAGATACT-AATTCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTA-TAAAATCCGGGTTAAGTCCCGAAGGCATT-GAA
*
57936268 CGAGTTTTAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
* * * *
57936307 TGAGTTAATATAA-CCGGGATATGTCCCGAAGGCACTTGAA
1 CGAGTT-ATAAAATCCGGGTTAAGTCCCGAAGGCA-TTGAA
57936347 CGAG
1 CGAG
57936351 GAGCTAAATC
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
39 29 0.28
40 75 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
Found at i:57950472 original size:16 final size:18
Alignment explanation
Indices: 57950451--57950483 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
57950441 TTGTTTATTT
57950451 GCTTATG-A-CTTACTAA
1 GCTTATGTAGCTTACTAA
57950467 GCTTATGTAGCTTACTA
1 GCTTATGTAGCTTACTA
57950484 TGTGTATCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (18 bp):
GCTTATGTAGCTTACTAA
Found at i:57956261 original size:39 final size:40
Alignment explanation
Indices: 57956216--57956383 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
57956206 CGGGGTTTAG
* * *
57956216 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
57956255 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
57956295 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
57956335 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
57956376 CCGGATAT
1 CCGGATAT
57956384 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:57956366 original size:41 final size:40
Alignment explanation
Indices: 57956239--57956383 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57956229 CTCGCACAAG
* * * * *
57956239 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57956279 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57956319 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57956360 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57956384 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57957612 original size:38 final size:38
Alignment explanation
Indices: 57957570--57957645 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
57957560 CAAGAACTCC
57957570 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
57957608 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
57957646 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:57964217 original size:39 final size:40
Alignment explanation
Indices: 57964159--57964338 Score: 105
Period size: 40 Copynumber: 4.5 Consensus size: 40
57964149 AATCAAGCAT
* * *
57964159 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
57964196 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* * ** * * *
57964236 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* ** * ** * * *
57964276 CTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAACCCGGATATAACCAC-TAGCATAAAGGC
* *
57964317 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAACCCGGATAT
57964339 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
37 8 0.07
38 2 0.02
39 16 0.14
40 63 0.53
41 29 0.25
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:57964321 original size:41 final size:40
Alignment explanation
Indices: 57964194--57964338 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57964184 CTCGCACAAG
* * * * *
57964194 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57964234 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57964274 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57964315 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57964339 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57965572 original size:25 final size:26
Alignment explanation
Indices: 57965538--57965588 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
57965528 CCTCCTTCCT
57965538 TAGAATTTTCGGCCAAAAG-AATGAA
1 TAGAATTTTCGGCCAAAAGAAATGAA
57965563 TAGAATTTTCGGCCAAAAGAAATGAA
1 TAGAATTTTCGGCCAAAAGAAATGAA
57965589 AAGGATGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (26 bp):
TAGAATTTTCGGCCAAAAGAAATGAA
Found at i:57977725 original size:15 final size:15
Alignment explanation
Indices: 57977705--57977735 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57977695 CATTAGTTAC
*
57977705 CTTACAATTGTAATG
1 CTTACAATTGAAATG
57977720 CTTACAATTGAAATG
1 CTTACAATTGAAATG
57977735 C
1 C
57977736 AAGAATAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (15 bp):
CTTACAATTGAAATG
Found at i:57982890 original size:54 final size:53
Alignment explanation
Indices: 57982814--57983084 Score: 267
Period size: 54 Copynumber: 5.0 Consensus size: 53
57982804 ACCCTTAATC
* *
57982814 GGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTGTTTTGTCCCTATGT
1 GGTAAAATGATTATTTTGCCCTTATATGGTAAAATGACTGTTTTG-CCCTATGT
* * * * *
57982868 GGAAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGA
1 GGTAAAATGATTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCC-TATGT
* * *
57982922 GGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGATTGTTTTGCGCTTATG-
1 GGTAAAATGATTATTTTGCCCTTATATGGTAAAATGACTGTTTTGC-CCTATGT
* * ** * * **
57982975 GGTTAAAATGACTATTTTTCCCTTATGGGGTAAAATAACTATTTTGCTGTTATGT
1 GG-TAAAATGATTATTTTGCCCTTATATGGTAAAATGACTGTTTTGC-CCTATGT
* * * *
57983030 GGTAAAATGACTT-TTTTGCCCTTTTATGGTAAGATGATTGTTTTACCCCTATGT
1 GGTAAAATGA-TTATTTTGCCCTTATATGGTAAAATGACTGTTTT-GCCCTATGT
57983084 G
1 G
57983085 ATGTATGCTT
Statistics
Matches: 177, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
53 5 0.03
54 167 0.94
55 5 0.03
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.42
Consensus pattern (53 bp):
GGTAAAATGATTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTATGT
Found at i:57982906 original size:81 final size:79
Alignment explanation
Indices: 57982814--57983077 Score: 298
Period size: 81 Copynumber: 3.3 Consensus size: 79
57982804 ACCCTTAATC
*
57982814 GGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTGTTTTGTCCCTATGTGGAAAAATGAT
1 GGTAAAATGACTATTTTACCCTTATA-GGTAAAATGACTGTTTTG-CCCTATGTGGTAAAATGAT
57982879 TGTTTTGCCCTTATGT
64 TGTTTTGCCCTTATGT
* * *
57982895 GGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGAT
1 GGTAAAATGACTATTTTACCCTTAT-AGGTAAAATGACTGTTTTGCCC-TATGTGGTAAAATGAT
*
57982960 TGTTTTGCGCTTATG-
64 TGTTTTGCCCTTATGT
* * * * **
57982975 GGTTAAAATGACTATTTTTCCCTTATGGGGTAAAATAACTATTTTGCTGTTATGTGGTAAAATGA
1 GG-TAAAATGACTATTTTACCCTTAT-AGGTAAAATGACTGTTTTGC-CCTATGTGGTAAAATGA
* *
57983040 CTT-TTTTGCCCTTTTAT
63 -TTGTTTTGCCCTTATGT
* * *
57983057 GGTAAGATGATTGTTTTACCC
1 GGTAAAATGACTATTTTACCC
57983078 CTATGTGATG
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.03
81 147 0.94
82 5 0.03
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.42
Consensus pattern (79 bp):
GGTAAAATGACTATTTTACCCTTATAGGTAAAATGACTGTTTTGCCCTATGTGGTAAAATGATTG
TTTTGCCCTTATGT
Found at i:57983073 original size:27 final size:27
Alignment explanation
Indices: 57982805--57983073 Score: 242
Period size: 27 Copynumber: 10.0 Consensus size: 27
57982795 CATACCTAGA
* * *
57982805 CCCTTA-ATCGGTAAAATGACTATTTTA
1 CCCTTATAT-GGTAAAATGATTGTTTTG
*
57982832 CCCTTATATGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGATTGTTTTG
* *
57982859 TCCC-TATGTGGAAAAATGATTGTTTTG
1 -CCCTTATATGGTAAAATGATTGTTTTG
* * *
57982886 CCCTTATGTGGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGATTGTTTTG
57982913 CCCTTATGA-GGTAAAATGATTGTTTTG
1 CCCTTAT-ATGGTAAAATGATTGTTTTG
57982940 CCCTTATATGGTAAAATGATTGTTTTG
1 CCCTTATATGGTAAAATGATTGTTTTG
* * * * *
57982967 CGCTTAT-GGGTTAAAATGACTATTTTT
1 CCCTTATATGG-TAAAATGATTGTTTTG
** * * *
57982994 CCCTTATGGGGTAAAATAACTATTTTG
1 CCCTTATATGGTAAAATGATTGTTTTG
** *
57983021 CTGTTATGTGGTAAAATGACTT-TTTTG
1 CCCTTATATGGTAAAATGA-TTGTTTTG
* *
57983048 CCCTTTTATGGTAAGATGATTGTTTT
1 CCCTTATATGGTAAAATGATTGTTTT
57983074 ACCCCTATGT
Statistics
Matches: 204, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.04
27 187 0.92
28 9 0.04
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGATTGTTTTG
Found at i:57983419 original size:18 final size:18
Alignment explanation
Indices: 57983396--57983460 Score: 63
Period size: 18 Copynumber: 4.0 Consensus size: 18
57983386 GACTTGCATT
57983396 CTGTTTACTGTTACTGCA
1 CTGTTTACTGTTACTGCA
57983414 CTGTTTAC---TA---CA
1 CTGTTTACTGTTACTGCA
*
57983426 CT-ATTACTGTTACTGCA
1 CTGTTTACTGTTACTGCA
*
57983443 CTGTTTATTGTTACTGCA
1 CTGTTTACTGTTACTGCA
57983461 ATGGGCCAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
11 4 0.11
12 4 0.11
14 2 0.05
15 2 0.05
17 4 0.11
18 21 0.57
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.45
Consensus pattern (18 bp):
CTGTTTACTGTTACTGCA
Found at i:57986780 original size:22 final size:21
Alignment explanation
Indices: 57986755--57986796 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
57986745 TGATTTTCCA
*
57986755 AGAATTATCGACACCATTTGAG
1 AGAAATATCGACACC-TTTGAG
*
57986777 AGAAATATCGATACCTTTGA
1 AGAAATATCGACACCTTTGA
57986797 TACAGTATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (21 bp):
AGAAATATCGACACCTTTGAG
Found at i:57988012 original size:49 final size:48
Alignment explanation
Indices: 57987959--57988086 Score: 159
Period size: 48 Copynumber: 2.6 Consensus size: 48
57987949 GAGTTTATGA
*
57987959 TGGGCCACTAGTAGGGCATGTTAGTTGCTAACCAAATTGGCGTGAATAT
1 TGGGCCACTGGTAGGGCATGTTAGTTGCTAA-CAAATTGGCGTGAATAT
* * * * *
57988008 TGGGCCATTGGTAGGGTATGTTAGTTACTAACAAGTTGGCGTGAATGT
1 TGGGCCACTGGTAGGGCATGTTAGTTGCTAACAAATTGGCGTGAATAT
* *
57988056 TGGGATC-CTGGTAGAGCATGTTAGTTGCTAA
1 TGGG-CCACTGGTAGGGCATGTTAGTTGCTAA
57988087 TTAGCATAGT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
48 39 0.58
49 28 0.42
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.31
Consensus pattern (48 bp):
TGGGCCACTGGTAGGGCATGTTAGTTGCTAACAAATTGGCGTGAATAT
Found at i:57989839 original size:16 final size:15
Alignment explanation
Indices: 57989814--57989843 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
57989804 CATATATTGG
57989814 AAAAAAACAAAAATA
1 AAAAAAACAAAAATA
57989829 AAAAAATACAAAAAT
1 AAAAAA-ACAAAAAT
57989844 GACTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAAAAACAAAAATA
Found at i:57991584 original size:24 final size:23
Alignment explanation
Indices: 57991540--57991583 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
57991530 AAAATTCTAC
*
57991540 AAAAAGAAATATGAAAGAAAATA
1 AAAAAGAAATAAGAAAGAAAATA
57991563 AAAATAGAAATAAG-AAGAAAA
1 AAAA-AGAAATAAGAAAGAAAA
57991584 AGATGAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (23 bp):
AAAAAGAAATAAGAAAGAAAATA
Found at i:57993350 original size:42 final size:43
Alignment explanation
Indices: 57993233--57993389 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
57993223 AGGATTGTCG
* * * * * *
57993233 ATATTTGATTTCATGTAAGACCAAGTCTGGGA-TGTTAGCATCG
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCATCA
* * *
57993276 ATTTGAGATTTACGTGTAAGACCATGTTTGGGACA-TCGGCATC-
1 ATATGTGATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCA
* *
57993319 ATATGTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCTTCA
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCA
* * * *
57993362 ATATTTGATTACATGTAAGACCACGTCT
1 ATATGTGATTTCGTGTAAGACCATGTCT
57993390 AAGACATTGG
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
42 26 0.29
43 42 0.46
44 23 0.25
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
ATATGTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCA
Found at i:57993382 original size:43 final size:42
Alignment explanation
Indices: 57993285--57993389 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
57993275 GATTTGAGAT
*
57993285 TTACGTGTAAGACCATGTTTGGGACATCGGCATCATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACATCGGCATCATATGTGA
* * * *
57993327 TTTCGTGTAAGACCCTGTCTGGGACAGT-GGCTTCAATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATGTGA
* *
57993370 TTACATGTAAGACCACGTCT
1 TTACGTGTAAGACCATGTCT
57993390 AAGACATTGG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.54
43 24 0.46
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATCGGCATCATATGTGA
Found at i:57996212 original size:110 final size:111
Alignment explanation
Indices: 57996004--57996224 Score: 363
Period size: 110 Copynumber: 2.0 Consensus size: 111
57995994 CCCGAGTGCA
57996004 GACATTATGGTAAAAGACATCCAGGAAGTTGTAGATTAAATAACCGAGCTTGCTTTAGATGTGGA
1 GACATTATGGTAAAAGACATCCAGGAAGTTGTAGATTAAATAACCGAGCTTGCTTTAGATGTGGA
*
57996069 TCCTTAGATCACTTTATCCGTGAATGTCTTGAGTCTGTAGAACAAG
66 TCCTTAGATCACTTTATCCGTGAATGTCCTGAGTCTGTAGAACAAG
* * * * *
57996115 GACATTGTGGTAAAAGACATTCGGGAAGTTGTAGATTAAATGATCGAGCTT-CTTTAGATGTGGA
1 GACATTATGGTAAAAGACATCCAGGAAGTTGTAGATTAAATAACCGAGCTTGCTTTAGATGTGGA
* *
57996179 TCCTTAGATCACTTTATCTGTGAATGTCCTGAGTCTGTAGAGCAAG
66 TCCTTAGATCACTTTATCCGTGAATGTCCTGAGTCTGTAGAACAAG
57996225 AGATTGGGCA
Statistics
Matches: 102, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
110 56 0.55
111 46 0.45
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (111 bp):
GACATTATGGTAAAAGACATCCAGGAAGTTGTAGATTAAATAACCGAGCTTGCTTTAGATGTGGA
TCCTTAGATCACTTTATCCGTGAATGTCCTGAGTCTGTAGAACAAG
Found at i:58001073 original size:46 final size:46
Alignment explanation
Indices: 58001021--58001291 Score: 328
Period size: 46 Copynumber: 5.9 Consensus size: 46
58001011 GTGCTCTCTG
*
58001021 ATATGAAATGTGTAAGACCATGGTTGAAATATACCATGGCAACCTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
*
58001067 ATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAACCTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
*
58001113 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
** * *
58001159 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
** ** * * * * * *
58001205 ATGGGAAATGAATACGACTATGGTTGAATGATACCATGGCAGCGTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
* * * * *
58001251 ACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
58001292 TCATGTCAAA
Statistics
Matches: 201, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 200 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
Found at i:58001598 original size:16 final size:17
Alignment explanation
Indices: 58001577--58001609 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58001567 ATGATGGAGC
58001577 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
58001593 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
58001610 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:58007546 original size:44 final size:44
Alignment explanation
Indices: 58007445--58007605 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 44
58007435 GAATTTCCAA
*
58007445 TATTTGATTTC--GTGTAAGACCAAGTCTGGGACATTGGCATCG
1 TATTTGATTTCATGTGTAAGACCAAGTCTGGGACATCGGCATCG
* * *
58007487 -ATTTGAGATTT-ATGTGTAAGACCATA-TTTGGGGCATCGTCATCG
1 TATTT--GATTTCATGTGTAAGACCA-AGTCTGGGACATCGGCATCG
* *
58007531 TATTTGATTTCATGTG--AGACCCTA-TCTGGGACAGT-GGCATCAA
1 TATTTGATTTCATGTGTAAGA-CCAAGTCTGGGACA-TCGGCATC-G
* * *
58007574 TATTTGATTACA--TGTAAGACCACGTCTAGGAC
1 TATTTGATTTCATGTGTAAGACCAAGTCTGGGAC
58007606 GTTGGAATTG
Statistics
Matches: 93, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
41 6 0.06
42 18 0.19
43 34 0.37
44 30 0.32
45 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (44 bp):
TATTTGATTTCATGTGTAAGACCAAGTCTGGGACATCGGCATCG
Found at i:58009264 original size:47 final size:47
Alignment explanation
Indices: 58009211--58009304 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
58009201 AGAGCTTAGT
58009211 AAGTTCGTGGTATAATACATTTAACTCAACATTTAAAAGCTATAAGA
1 AAGTTCGTGGTATAATACATTTAACTCAACATTTAAAAGCTATAAGA
58009258 AAGTTCGTGGTATAATACATTTAACTCAACATTTAAAAGCTATAAGA
1 AAGTTCGTGGTATAATACATTTAACTCAACATTTAAAAGCTATAAGA
58009305 CATATTAGCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.32
Consensus pattern (47 bp):
AAGTTCGTGGTATAATACATTTAACTCAACATTTAAAAGCTATAAGA
Found at i:58009723 original size:40 final size:41
Alignment explanation
Indices: 58009655--58009734 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 41
58009645 GAAACTATCT
* *
58009655 CAATATTGCACACTTAGTGCCACATATAGTCAAAGCTATTC
1 CAATATTGCACACTTAATGCCACATATAGCCAAAGCTATTC
* ** *
58009696 CAAT-TTGCACACTTAATGCTATTTATAGCCGAAGCTATT
1 CAATATTGCACACTTAATGCCACATATAGCCAAAGCTATT
58009735 TCAAATCGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (41 bp):
CAATATTGCACACTTAATGCCACATATAGCCAAAGCTATTC
Found at i:58013318 original size:3 final size:3
Alignment explanation
Indices: 58013312--58013336 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
58013302 CAAGATGATG
58013312 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
58013337 ACTAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:58018260 original size:24 final size:24
Alignment explanation
Indices: 58018231--58018289 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
58018221 CATTTTGATT
58018231 GCCTTTATGGCGT-CAATTGATTTG
1 GCCTTTATGGCGTAC-ATTGATTTG
*
58018255 GCCTTTATGGCGTACTTTGATTTG
1 GCCTTTATGGCGTACATTGATTTG
58018279 GCCTTTATGGC
1 GCCTTTATGGC
58018290 ATATTCTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 32 0.97
25 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.25, T:0.42
Consensus pattern (24 bp):
GCCTTTATGGCGTACATTGATTTG
Found at i:58031877 original size:26 final size:26
Alignment explanation
Indices: 58031842--58032003 Score: 110
Period size: 26 Copynumber: 6.5 Consensus size: 26
58031832 TGGCTATCCG
*
58031842 GAGC-TCCTGATTAAAAGCTCTTTGT
1 GAGCTTCCTGATTAATAGCTCTTTGT
* **
58031867 GAGCTTCCTGATTAAAATTTCTTTGT
1 GAGCTTCCTGATTAATAGCTCTTTGT
* * *
58031893 GAACTTCCTGATT-ATGGCTC-TTAT
1 GAGCTTCCTGATTAATAGCTCTTTGT
**
58031917 GAGCTTCCTG-TTATATAGC-C-CAGAT
1 GAGCTTCCTGATTA-ATAGCTCTTTG-T
* *
58031942 AAGCTTCCTGA-T--TGGCTCTTTGT
1 GAGCTTCCTGATTAATAGCTCTTTGT
* *
58031965 GAGCTTCCTAATTAATGGCTCTTTGT
1 GAGCTTCCTGATTAATAGCTCTTTGT
*
58031991 AAGCTTCCT-ATTA
1 GAGCTTCCTGATTA
58032004 TATGGCTTGA
Statistics
Matches: 107, Mismatches: 20, Indels: 20
0.73 0.14 0.14
Matches are distributed among these distances:
22 3 0.03
23 13 0.12
24 15 0.14
25 26 0.24
26 50 0.47
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (26 bp):
GAGCTTCCTGATTAATAGCTCTTTGT
Found at i:58032008 original size:26 final size:26
Alignment explanation
Indices: 58031954--58032010 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
58031944 GCTTCCTGAT
*
58031954 TGGCTCTTTGTGAGCTTCCTAATTAA
1 TGGCTCTTTGTAAGCTTCCTAATTAA
58031980 TGGCTCTTTGTAAGCTTCCT-ATTATA
1 TGGCTCTTTGTAAGCTTCCTAATTA-A
58032006 TGGCT
1 TGGCT
58032011 TGAAAGAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (26 bp):
TGGCTCTTTGTAAGCTTCCTAATTAA
Found at i:58034115 original size:52 final size:52
Alignment explanation
Indices: 58034037--58034143 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
58034027 AAGTGAGCTA
58034037 ATCACCCATAATCAAATTTGATTTATTCTTCCTTTTAATTCTCTTGAATTTT
1 ATCACCCATAATCAAATTTGATTTATTCTTCCTTTTAATTCTCTTGAATTTT
58034089 ATCACCCATAATCAAATTTGATTTATTCTTCCTTTTAATTCTCTTGAATTTT
1 ATCACCCATAATCAAATTTGATTTATTCTTCCTTTTAATTCTCTTGAATTTT
58034141 ATC
1 ATC
58034144 TTTTGATGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.50
Consensus pattern (52 bp):
ATCACCCATAATCAAATTTGATTTATTCTTCCTTTTAATTCTCTTGAATTTT
Done.