Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 170 of 295
Found at i:58045266 original size:18 final size:17
Alignment explanation
Indices: 58045243--58045281 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
58045233 GAGCAGCCGA
58045243 AATTAATGTGTTTAAATT
1 AATTAATGTG-TTAAATT
*
58045261 AATTAATGTGTTGAATT
1 AATTAATGTGTTAAATT
58045278 AATT
1 AATT
58045282 TGTGTGTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTAATGTGTTAAATT
Found at i:58050091 original size:20 final size:20
Alignment explanation
Indices: 58050066--58050105 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
58050056 GAACCTAAAG
58050066 AAAAACAAACACTCCAATGT
1 AAAAACAAACACTCCAATGT
58050086 AAAAACAAACACTCCAATGT
1 AAAAACAAACACTCCAATGT
58050106 CACATCACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAACAAACACTCCAATGT
Found at i:58052921 original size:56 final size:56
Alignment explanation
Indices: 58052759--58052924 Score: 228
Period size: 56 Copynumber: 3.0 Consensus size: 56
58052749 TCTTACATGT
* * * * *
58052759 AATCACATATCGATGCC-AC-TATCCCAGACAGGGTCTTACTCGCACACATAAACCGA
1 AATCACATATCGATGCCAACGTAT--TAAACATGGTCTTACTCGCACACATATATCGA
* *
58052815 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATATATCGA
*
58052871 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCACACACATATATC
1 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATATATC
58052925 AATTCCATGG
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
56 94 0.95
57 2 0.02
58 3 0.03
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATATATCGA
Found at i:58060537 original size:48 final size:48
Alignment explanation
Indices: 58060475--58060761 Score: 520
Period size: 48 Copynumber: 6.0 Consensus size: 48
58060465 TATATATGTG
58060475 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
58060523 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATCTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
58060571 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
58060619 TGTGGTAAAGCCGAATGGCTAATGTGAAATACGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
58060667 TGTGGTAAAGCCGAATGGCTACTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
58060715 TGTGGTAATGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
58060762 GTAGGAGATG
Statistics
Matches: 230, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 230 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:58060966 original size:37 final size:37
Alignment explanation
Indices: 58060911--58061050 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
58060901 GGAAATATAT
58060911 TCCGGGTAAGACCCGATGACTACGTGTGGAGATAATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATAATG
* *
58060948 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATAATG
*
58060985 TCCGGGTAAGACCCGATGACTACGTGTGGAGATATTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATAATG
* *
58061022 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
58061051 GGACTATTCG
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATAATG
Found at i:58065549 original size:14 final size:14
Alignment explanation
Indices: 58065530--58065556 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58065520 TTCTTGCAAT
58065530 TTAATTTAATTTTA
1 TTAATTTAATTTTA
58065544 TTAATTTAATTTT
1 TTAATTTAATTTT
58065557 TCTCTCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTAATTTAATTTTA
Found at i:58066279 original size:32 final size:32
Alignment explanation
Indices: 58066238--58066303 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
58066228 AAGGACTTAC
58066238 TGAGAAGGTGCCCTCACCATAGGTTACCGCTT
1 TGAGAAGGTGCCCTCACCATAGGTTACCGCTT
58066270 TGAGAAGGTGCCCTCACCATAGGTTACCGCTT
1 TGAGAAGGTGCCCTCACCATAGGTTACCGCTT
58066302 TG
1 TG
58066304 GCTGCAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (32 bp):
TGAGAAGGTGCCCTCACCATAGGTTACCGCTT
Found at i:58069256 original size:10 final size:10
Alignment explanation
Indices: 58069241--58069274 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
58069231 CATTCGGAAG
58069241 TATATATACATA
1 TATATATAC--A
58069253 TATATATACA
1 TATATATACA
58069263 TATATATACA
1 TATATATACA
58069273 TA
1 TA
58069275 AGTATGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (10 bp):
TATATATACA
Found at i:58069258 original size:12 final size:12
Alignment explanation
Indices: 58069241--58069270 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
58069231 CATTCGGAAG
58069241 TATATATACATA
1 TATATATACATA
58069253 TATATATACATA
1 TATATATACATA
58069265 TATATA
1 TATATA
58069271 CATAAGTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATATACATA
Found at i:58069766 original size:29 final size:29
Alignment explanation
Indices: 58069729--58069831 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
58069719 GTTGAGAGAT
* *
58069729 TGGCACTGAGTGTGCAAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
58069758 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* *
58069787 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
58069816 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
58069832 CGGTTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:58080247 original size:62 final size:65
Alignment explanation
Indices: 58080171--58080300 Score: 203
Period size: 68 Copynumber: 2.0 Consensus size: 65
58080161 ACATAATCTA
58080171 AATCATAACACAATTATCAATGAAAACCC-A-A-ATATAATCTACTTTCAAAAACATACAAAATT
1 AATCATAACACAATTATCAATGAAAACCCAACATATATAATCTACTTTCAAAAACATACAAAATT
*
58080233 AATCATAACGCAATTATCAATGAAAACCCAAAGTCATATATAATCTACTTTCAAAAACATACAAA
1 AATCATAACACAATTATCAATGAAAACCC-AA--CATATATAATCTACTTTCAAAAACATACAAA
58080298 ATT
63 ATT
58080301 CATGTATTAT
Statistics
Matches: 61, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
62 28 0.46
64 1 0.02
67 1 0.02
68 31 0.51
ACGTcount: A:0.52, C:0.19, G:0.03, T:0.26
Consensus pattern (65 bp):
AATCATAACACAATTATCAATGAAAACCCAACATATATAATCTACTTTCAAAAACATACAAAATT
Found at i:58081008 original size:14 final size:14
Alignment explanation
Indices: 58080991--58081019 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
58080981 AAGCAATAAT
58080991 ATATTCATAATATA
1 ATATTCATAATATA
58081005 ATATTCATAATATA
1 ATATTCATAATATA
58081019 A
1 A
58081020 CTTATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATTCATAATATA
Found at i:58085727 original size:28 final size:28
Alignment explanation
Indices: 58085679--58085787 Score: 139
Period size: 28 Copynumber: 3.9 Consensus size: 28
58085669 CTGCCAAAAG
* * *
58085679 AGAT-ATTGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
*
58085706 AGATAATTGTGGCAGGGCCACCAGAAAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
* *
58085734 AGATATTTGTGGCAGAGCCACCAGAAAG
1 AGATAATTGTGGCAGAGCCACCAGAAAC
* *
58085762 AGATATTTGTGGTAGAGCCACCAGAA
1 AGATAATTGTGGCAGAGCCACCAGAA
58085788 CGATTCCTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 4 0.05
28 69 0.95
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (28 bp):
AGATAATTGTGGCAGAGCCACCAGAAAC
Found at i:58087049 original size:18 final size:17
Alignment explanation
Indices: 58087019--58087071 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
58087009 GCTATAGAGG
58087019 AAAAGAAGAAGAGGAAA
1 AAAAGAAGAAGAGGAAA
* *
58087036 AAATAGATGAAGAGAGGAA
1 AAA-AGAAGAAGAG-GAAA
58087055 AAAAGAAGAAGA-GAAA
1 AAAAGAAGAAGAGGAAA
58087071 A
1 A
58087072 GAATTGTCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 17 0.57
19 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (17 bp):
AAAAGAAGAAGAGGAAA
Found at i:58089246 original size:38 final size:38
Alignment explanation
Indices: 58089187--58089300 Score: 149
Period size: 38 Copynumber: 3.0 Consensus size: 38
58089177 TATAGATTTA
* * * *
58089187 GGGTTCTTGTTGTCCTGAAACCTAAGTCAGTTAACCTT
1 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
* * *
58089225 -TGTTATTTGTCGTCCTCAAACCTAGGTCAGCTGACCTT
1 GGGTT-TTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
58089263 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
1 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
58089301 CTCCTATTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
37 3 0.05
38 58 0.91
39 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (38 bp):
GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
Found at i:58091267 original size:44 final size:43
Alignment explanation
Indices: 58091151--58091282 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 43
58091141 ATAGCTCATA
*
58091151 CGATGCCAACGTCCTAGATGTGGTCTTACATGTAATCAAATAT
1 CGATGCCAACATCCTAGATGTGGTCTTACATGTAATCAAATAT
* *
58091194 CGATGCC-ACTATCCTAGACAG-GGTTTTACATGTAAATCTTAAAT-T
1 CGATGCCAAC-ATCCTAGA-TGTGGTCTTACATGT-AATC--AAATAT
* * *
58091239 -GATGCCAACAT-CTCAGATGTGGTCTTACACGAAATCACATAT
1 CGATGCCAACATCCT-AGATGTGGTCTTACATGTAATCAAATAT
58091281 CG
1 CG
58091283 GAATCCTATG
Statistics
Matches: 71, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
41 3 0.04
42 3 0.04
43 33 0.46
44 25 0.35
45 3 0.04
46 4 0.06
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (43 bp):
CGATGCCAACATCCTAGATGTGGTCTTACATGTAATCAAATAT
Found at i:58097568 original size:40 final size:40
Alignment explanation
Indices: 58097446--58097629 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
58097436 TATTCGAATG
* * * * *
58097446 ATATTCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACT
* * * * *
58097486 ATATCCGGACTAAGATCCAAAGGCATTTGTGC--GCGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCG--ACT
*
58097526 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACT
* * * * *
58097566 ATATCCGAGATAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACT
58097606 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58097630 CTTGTGCGAG
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
38 2 0.02
40 112 0.96
42 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACT
Found at i:58097589 original size:80 final size:80
Alignment explanation
Indices: 58097446--58097629 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 80
58097436 TATTCGAATG
* * * * *
58097446 ATATTCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
* * *
58097511 TTTGTGCGCGTTG-CT
66 TTTATGCGAG-TGACC
* *
58097526 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGAGA-TAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCG-GACTAAGAT-CCAAAGG
*
58097589 CATTTATGCTAGTGACC
64 CATTTATGCGAGTGACC
58097606 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58097630 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 85 0.94
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
TTTATGCGAGTGACC
Found at i:58105584 original size:40 final size:40
Alignment explanation
Indices: 58105524--58105707 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
58105514 TATTCGAATG
*
58105524 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
58105564 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
58105604 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
58105644 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
58105684 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
58105708 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:58105657 original size:80 final size:80
Alignment explanation
Indices: 58105524--58105707 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
58105514 TATTCGAATG
* * *
58105524 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
58105588 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
58105604 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
58105669 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
58105684 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58105708 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:58108379 original size:28 final size:28
Alignment explanation
Indices: 58108324--58108439 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
58108314 AACATGGCTG
* * *
58108324 CCAG-AATAGATA-CTGTGACAGAGTCA
1 CCAGAAATAGATATTTGTGGCAGAGCCA
* * *
58108350 CCAGATATAGATAATTGTGGCAGGGCCA
1 CCAGAAATAGATATTTGTGGCAGAGCCA
58108378 CCAGAAATAGATATTTGTGGCAGAGCCA
1 CCAGAAATAGATATTTGTGGCAGAGCCA
*
58108406 CCAGAAATAGATATTTGTGGCAGAGCCT
1 CCAGAAATAGATATTTGTGGCAGAGCCA
58108434 CCAGAA
1 CCAGAA
58108440 CGCTTCCTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.05
27 7 0.09
28 68 0.86
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (28 bp):
CCAGAAATAGATATTTGTGGCAGAGCCA
Found at i:58112238 original size:27 final size:27
Alignment explanation
Indices: 58112207--58112384 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58112197 TAAATTGTAC
58112207 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58112234 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58112260 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58112288 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58112316 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58112343 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58112370 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58112385 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58112321 original size:82 final size:81
Alignment explanation
Indices: 58112208--58112363 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58112198 AAATTGTACA
* *
58112208 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58112272 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58112289 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58112354 TGCGAGTTGA
65 TGCGAATTGA
58112364 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58112375 original size:82 final size:81
Alignment explanation
Indices: 58112204--58112384 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
58112194 GATTAAATTG
* *
58112204 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58112269 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58112285 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58112349 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58112367 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58112385 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58120268 original size:27 final size:27
Alignment explanation
Indices: 58120234--58120410 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
58120224 TAAATTGTAC
*
58120234 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58120261 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58120287 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58120315 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58120343 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58120370 AGCACTAAGTGTGCGA-GTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58120396 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58120411 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 21 0.17
27 83 0.65
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58120352 original size:82 final size:81
Alignment explanation
Indices: 58120235--58120385 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
58120225 AAATTGTACA
* * *
58120235 GCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58120299 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58120316 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
58120381 TGCGA
65 TGCGA
58120386 GTGATTATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 15 0.24
82 46 0.74
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58120358 original size:55 final size:53
Alignment explanation
Indices: 58120234--58120410 Score: 194
Period size: 55 Copynumber: 3.3 Consensus size: 53
58120224 TAAATTGTAC
* * *
58120234 AGCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG-AGTGAATATGT
* * ** *
58120287 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAG--TGAATATGT
* * * *
58120343 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTGAATATGT
*
58120396 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58120411 GACTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
53 23 0.22
54 36 0.35
55 44 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTGAATATGT
Found at i:58138115 original size:43 final size:41
Alignment explanation
Indices: 58138017--58138129 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 41
58138007 GGTTACTAAG
* ** * *
58138017 ATTACATGTACGACCATTTATGGGATATGGCATCGATATGA
1 ATTACATGTAAGACCATAGATGGGATATGCCATCGATACGA
* *
58138058 ACTT-CGTGTAAGACCATAGATGGGCTATTGCCATCGATACGA
1 A-TTACATGTAAGACCATAGATGGGATA-TGCCATCGATACGA
**
58138100 TATTACATGTAAGACCATATTTGGGATATG
1 -ATTACATGTAAGACCATAGATGGGATATG
58138130 GCATTGGTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 19 0.33
42 18 0.32
43 20 0.35
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (41 bp):
ATTACATGTAAGACCATAGATGGGATATGCCATCGATACGA
Found at i:58142703 original size:29 final size:28
Alignment explanation
Indices: 58142644--58142758 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
58142634 GTGAGCATGA
* * **
58142644 ATATAAATGTGACTGGTCCTAACCGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
58142672 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
58142701 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
58142730 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
58142758 A
1 A
58142759 GATACAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 28 0.37
29 47 0.63
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:58144960 original size:32 final size:32
Alignment explanation
Indices: 58144918--58144980 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
58144908 CAACGAAGTA
*
58144918 TGAGCGTTGCGTTAGGTTTGAGGATGGACTTT
1 TGAGCATTGCGTTAGGTTTGAGGATGGACTTT
58144950 TGAGCATTGCGTTAGGTTTGAGGATGGACTT
1 TGAGCATTGCGTTAGGTTTGAGGATGGACTT
58144981 AGAGATAGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.17, C:0.10, G:0.37, T:0.37
Consensus pattern (32 bp):
TGAGCATTGCGTTAGGTTTGAGGATGGACTTT
Found at i:58147188 original size:28 final size:29
Alignment explanation
Indices: 58147122--58147192 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
58147112 AATGTGACTA
* *
58147122 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATATGATTTG
*
58147151 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATATGATTTG
*
58147179 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
58147193 GATACAGGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
28 16 0.42
29 22 0.58
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATATGATTTG
Found at i:58147239 original size:53 final size:53
Alignment explanation
Indices: 58147176--58147281 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
58147166 ATGAATATGA
*
58147176 TTGGGCTTAATGGGCCAGATACAGGTATGTGAAATTGTTTGGGCTTTGTAAGG
1 TTGGGCTTAATGGGCCAGATACAGGTATGTGAAATTGTTTGGGCTTTATAAGG
58147229 TTGGGCTTAATGGGCCAGATACAGGTATGTGAAATTGTTTGGGCTTTATAAGG
1 TTGGGCTTAATGGGCCAGATACAGGTATGTGAAATTGTTTGGGCTTTATAAGG
58147282 GGTTTTGGGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.24, C:0.09, G:0.33, T:0.34
Consensus pattern (53 bp):
TTGGGCTTAATGGGCCAGATACAGGTATGTGAAATTGTTTGGGCTTTATAAGG
Found at i:58149897 original size:49 final size:49
Alignment explanation
Indices: 58149838--58150069 Score: 329
Period size: 49 Copynumber: 4.7 Consensus size: 49
58149828 CTGGTACGTA
* *
58149838 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* ** *
58149887 TAGTAGCCTGCACTTAGTACGACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
58149937 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
*
58149988 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
*
58150037 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
58150070 TCACAATAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
49 72 0.45
50 48 0.30
51 39 0.25
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:58150003 original size:101 final size:98
Alignment explanation
Indices: 58149838--58150069 Score: 329
Period size: 100 Copynumber: 2.3 Consensus size: 98
58149828 CTGGTACGTA
* * * *
58149838 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
58149903 GTACGACACACGTGACCTAACCATCTGATACACG
66 GTACGACACACGTGACC-AACCATCTGATACACG
* *
58149937 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * ** *
58150002 TAGTACTACACATGTGACCAATTATCTGGTACACG
64 TAGTACGACACACGTGACCAACCATCTGATACACG
*
58150037 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
58150070 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 46 0.39
101 42 0.36
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACGACACACGTGACCAACCATCTGATACACG
Found at i:58150751 original size:30 final size:30
Alignment explanation
Indices: 58150717--58150776 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58150707 CTTTAATACG
58150717 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
58150747 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
58150777 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:58155233 original size:49 final size:48
Alignment explanation
Indices: 58155169--58155343 Score: 192
Period size: 49 Copynumber: 3.5 Consensus size: 48
58155159 CTGGTACGTA
* *
58155169 TAGTAGCCTGCACTTAGTACTACACATGCCGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGACG-CAATTATCAGGTACACG
* ** * *
58155218 TAGTAGCCTGCACTTAGTACTAACACGTGAC-CTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT-ACACATGACGC-AATTATCAGGTACACG
* *
58155267 TAGTAGCCTGCACTTAGTACTACACACGTGATCG-AAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA--TGA-CGCAA-TTATCAGGTACACG
58155318 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
58155344 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
48 5 0.05
49 54 0.51
50 12 0.11
51 35 0.33
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGACGCAATTATCAGGTACACG
Found at i:58155333 original size:100 final size:98
Alignment explanation
Indices: 58155169--58155351 Score: 271
Period size: 100 Copynumber: 1.8 Consensus size: 98
58155159 CTGGTACGTA
* *
58155169 TAGTAGCCTGCACTTAGTACTACACATGCCGCCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCCG-CAATTATCAGGTACACATAGTAGCCTGCACTTA
58155234 GTACTA-ACACGTGACCTAACCATCTGATACACG
65 GTACTACACACGTGACCTAACCATCTGATACACG
* *
58155267 TAGTAGCCTGCACTTAGTACTACACACGTGATCG-AAGTTATCAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TG-CCGCAA-TTATCAGGTACACATAGTAGCCTGCAC
58155331 TTAGTACTACACACGTGACCT
62 TTAGTACTACACACGTGACCT
58155352 CACAATAGCT
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
98 26 0.34
99 2 0.03
100 35 0.46
101 13 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGCCGCAATTATCAGGTACACATAGTAGCCTGCACTTAG
TACTACACACGTGACCTAACCATCTGATACACG
Found at i:58156029 original size:30 final size:30
Alignment explanation
Indices: 58155995--58156054 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58155985 CTTTAATACG
58155995 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
58156025 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
58156055 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:58164660 original size:50 final size:48
Alignment explanation
Indices: 58164570--58164730 Score: 161
Period size: 50 Copynumber: 3.4 Consensus size: 48
58164560 CCATATCAAT
* * * * **
58164570 AGACATGGTCTTGCACTAACT--CATACATCAAAGTCGATGCCATGTCTT
1 AGACATGGTCTTACACT-ACTAACACATATCAAA-CCGATGCCATGTCCC
** * *
58164618 AGACATGGTCTTACACTGACTCTCATATATCAAGACCTATGCCATGTCCC
1 AGACATGGTCTTACACT-ACTAACACATATCAA-ACCGATGCCATGTCCC
58164668 AGACATGGTCTTA-A--ACTAACACATATCAAACCGATGCCATGTCCC
1 AGACATGGTCTTACACTACTAACACATATCAAACCGATGCCATGTCCC
58164713 AGACATGGTCTTACACTA
1 AGACATGGTCTTACACTA
58164731 ACTTTTAGGT
Statistics
Matches: 96, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
45 28 0.29
46 13 0.14
48 20 0.21
49 1 0.01
50 33 0.34
51 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (48 bp):
AGACATGGTCTTACACTACTAACACATATCAAACCGATGCCATGTCCC
Found at i:58164708 original size:45 final size:45
Alignment explanation
Indices: 58164570--58164732 Score: 155
Period size: 45 Copynumber: 3.4 Consensus size: 45
58164560 CCATATCAAT
** * * **
58164570 AGACATGGTCTTGCACTAACTCATACATCAAAGTCGATGCCATGTCTT
1 AGACATGGTCTTAAACTAACACAT--ATCAAA-CCGATGCCATGTCCC
** * *
58164618 AGACATGGTCTTACACTGACTCTCATATATCAAGACCTATGCCATGTCCC
1 AGACATGGTCTTA-A---ACTAACACATATCAA-ACCGATGCCATGTCCC
58164668 AGACATGGTCTTAAACTAACACATATCAAACCGATGCCATGTCCC
1 AGACATGGTCTTAAACTAACACATATCAAACCGATGCCATGTCCC
*
58164713 AGACATGGTCTTACACTAAC
1 AGACATGGTCTTAAACTAAC
58164733 TTTTAGGTCT
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
45 34 0.36
46 12 0.13
48 12 0.13
49 1 0.01
50 29 0.31
51 1 0.01
52 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (45 bp):
AGACATGGTCTTAAACTAACACATATCAAACCGATGCCATGTCCC
Found at i:58164755 original size:95 final size:97
Alignment explanation
Indices: 58164570--58164774 Score: 238
Period size: 95 Copynumber: 2.1 Consensus size: 97
58164560 CCATATCAAT
** * * **
58164570 AGACATGGTCTTGCACTAACTCATACATCAAAGTCGATGCCATGTCTTAGACATGGTCTTACACT
1 AGACATGGTCTTAAACTAACACATA-ATCAAAGCCGATGCCATGTCCCAGACATGGTCTTACACT
* * *
58164635 GACTCTCATATATCAAGACCTATGCCATGTCCC
65 AACTCTCAGATATCAAGACCGATGCCATGTCCC
58164668 AGACATGGTCTTAAACTAACACAT-ATCAAA-CCGATGCCATGTCCCAGACATGGTCTTACACTA
1 AGACATGGTCTTAAACTAACACATAATCAAAGCCGATGCCATGTCCCAGACATGGTCTTACACTA
* * * * *
58164731 ACTTTTAGGTCTCGAAG-TCGATGCCATGTCCC
66 ACTCTCAGATATC-AAGACCGATGCCATGTCCC
58164763 AG-CATGGTCTTA
1 AGACATGGTCTTA
58164775 CACTGCCTCT
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
94 10 0.11
95 52 0.57
96 9 0.10
98 21 0.23
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (97 bp):
AGACATGGTCTTAAACTAACACATAATCAAAGCCGATGCCATGTCCCAGACATGGTCTTACACTA
ACTCTCAGATATCAAGACCGATGCCATGTCCC
Found at i:58177443 original size:34 final size:34
Alignment explanation
Indices: 58177399--58177478 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
58177389 CAGTAAGAGT
*
58177399 TCAGTTTCAGT-TAGGGCCTAAGCCCATTATAGTA
1 TCAGTATCAGTGT-GGGCCTAAGCCCATTATAGTA
* *
58177433 TCAGTATCAGTGTGGGCCTTAGCCCATTTTAGTGA
1 TCAGTATCAGTGTGGGCCTAAGCCCATTATAGT-A
*
58177468 -CAGTAACAGTG
1 TCAGTATCAGTG
58177479 CATATATGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
34 38 0.95
35 2 0.05
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (34 bp):
TCAGTATCAGTGTGGGCCTAAGCCCATTATAGTA
Found at i:58177784 original size:27 final size:27
Alignment explanation
Indices: 58177752--58177804 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
58177742 ACAGTCATAC
* *
58177752 ATCTCATAAGGGCATAATAGTCATTTT
1 ATCTCATAAGGGCATAACAATCATTTT
*
58177779 ATCTCATAGGGGCATAACAATCATTT
1 ATCTCATAAGGGCATAACAATCATTT
58177805 GTCACTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (27 bp):
ATCTCATAAGGGCATAACAATCATTTT
Found at i:58182418 original size:43 final size:43
Alignment explanation
Indices: 58182353--58182563 Score: 305
Period size: 43 Copynumber: 4.9 Consensus size: 43
58182343 ACATATCATT
* *
58182353 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
58182396 TCACCGGCATGAAGCCTACTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
58182439 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * * * *
58182482 TCACCGGTACGAAGCCTCCTAGGCACAAAGGCCTGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* ** * *
58182525 TCACCGGTACAAAGCCTGCTAGGCACAAAGGCTCGAATA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
58182564 TAATACCAGC
Statistics
Matches: 155, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 155 1.00
ACGTcount: A:0.31, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:58182647 original size:38 final size:38
Alignment explanation
Indices: 58182560--58182655 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 38
58182550 CAAAGGCTCG
* * * *
58182560 AATATAATACCAGCACTAGGCCTGCGGGATTTATCCCT
1 AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
*
58182598 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
1 AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
**
58182636 AATATTTTACCAGCACGAAG
1 AATATAATACCAGCACGAAG
58182656 TCTACGGGTC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (38 bp):
AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
Found at i:58187285 original size:18 final size:18
Alignment explanation
Indices: 58187262--58187296 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
58187252 GGTACCTGTA
*
58187262 TATATATATTTATATATG
1 TATATATATTTACATATG
58187280 TATATATATTTACATAT
1 TATATATATTTACATAT
58187297 TTTTTCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TATATATATTTACATATG
Found at i:58203386 original size:7 final size:7
Alignment explanation
Indices: 58203376--58203401 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
58203366 ATAAAAATTC
58203376 AAAATAA
1 AAAATAA
58203383 AAAATAA
1 AAAATAA
58203390 AAAATAA
1 AAAATAA
58203397 AAAAT
1 AAAAT
58203402 CTCATGGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:58205746 original size:42 final size:43
Alignment explanation
Indices: 58205679--58205783 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
58205669 AGGGTCACTA
** *
58205679 AGATTACGTGTAAGACCATCTCTGGGATA-TGGCATCGATATG
1 AGATTACGTGTAAGACCATAGCTGGGATATTGGCATCGATACG
* *
58205721 AGACTT-TGTGTAAGACCATAGCTGGGCTATTGGCATCGATACG
1 AGA-TTACGTGTAAGACCATAGCTGGGATATTGGCATCGATACG
*
58205764 AGATTACATGTAAGACCATA
1 AGATTACGTGTAAGACCATA
58205784 TCCAGGATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 24 0.45
43 29 0.55
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
AGATTACGTGTAAGACCATAGCTGGGATATTGGCATCGATACG
Found at i:58207854 original size:28 final size:27
Alignment explanation
Indices: 58207782--58207869 Score: 115
Period size: 28 Copynumber: 3.3 Consensus size: 27
58207772 AGCATGGTTG
* * *
58207782 CCAGAACAAATA-TTGTGACAGAGCCA
1 CCAGAACAGATATTTGTGGCATAGCCA
*
58207808 CCAGAACAGATATTCGTGGCATAGCCA
1 CCAGAACAGATATTTGTGGCATAGCCA
58207835 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCATAGCCA
*
58207863 CTAGAAC
1 CCAGAAC
58207870 GCTTCTTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 11 0.20
27 18 0.33
28 25 0.46
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCATAGCCA
Found at i:58208032 original size:27 final size:26
Alignment explanation
Indices: 58207971--58208034 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
58207961 CAAAATTAAC
* *
58207971 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTAATTTTACA
* *
58207997 CCTAAGGGTATAATGGTAATTTTTATA
1 CCTAGGGGTATAATGGTAA-TTTTACA
*
58208024 CTTAGGGGTAT
1 CCTAGGGGTAT
58208035 TTTAGTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTTACA
Found at i:58214078 original size:30 final size:30
Alignment explanation
Indices: 58213973--58214316 Score: 336
Period size: 30 Copynumber: 11.5 Consensus size: 30
58213963 ATGGTTGTTA
* *
58213973 CCATCCCTTTTCGTAGTTCGATAGAT-GAAG
1 CCATCCCTTTTCATAATTCGATAG-TCGAAG
* * * * *
58214003 CTATCCCTTTCCATATTTTGATGGTC-ATCA-
1 CCATCCCTTTTCATAATTCGATAGTCGA--AG
* *
58214033 CCATCCCTTTCCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* * *
58214063 CTATCTCTTTACATAATTCGATAGTCGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* *
58214093 CCATCCCTTTCCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* * ** *
58214123 CCATGCCTTTTCATAATTTGATAACCAAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* * * *
58214153 ACATCCATTTTCATAATTCAATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
*
58214183 CCATCCCTTTTCATAATTCGATAGTTGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* * *
58214213 TCATCCCTTTTCATAATTCGATAGCCAAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* * *
58214243 CCATCCATTTTCATAATTTGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGTCGAAG
* *
58214273 CCATCCCTTTTCATAATTCGATGGTCGTCA-
1 CCATCCCTTTTCATAATTCGATAGTCG-AAG
58214303 CCATCCCTTTTCAT
1 CCATCCCTTTTCAT
58214317 TAGCCAATGA
Statistics
Matches: 261, Mismatches: 47, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
29 3 0.01
30 255 0.98
31 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCGATAGTCGAAG
Found at i:58214331 original size:30 final size:30
Alignment explanation
Indices: 58214273--58214331 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58214263 ATAGCCGAAG
** * *
58214273 CCATCCCTTTTCATAATTCGATGGTCGTCA
1 CCATCCCTTTTCATAAGCCAATGATCGTCA
*
58214303 CCATCCCTTTTCATTAGCCAATGATCGTC
1 CCATCCCTTTTCATAAGCCAATGATCGTC
58214332 GATACGCTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (30 bp):
CCATCCCTTTTCATAAGCCAATGATCGTCA
Found at i:58217804 original size:29 final size:29
Alignment explanation
Indices: 58217730--58217844 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
58217720 TACATACATG
* * *
58217730 CATATAGCCCACTAGGCCCAA-TCTTGTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
58217758 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* * **
58217787 CTTATGGCCCACTAGGCCTAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
58217816 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
58217845 ATACTCATGC
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 17 0.25
29 50 0.75
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:58217950 original size:19 final size:19
Alignment explanation
Indices: 58217917--58217963 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
58217907 TGGGCACAAC
*
58217917 AGCCCA-TCAGGCCCATTT
1 AGCCCATTCTGGCCCATTT
58217935 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
58217954 GGCCAATTCT
1 AGCCCATTCT
58217964 CAACCCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:58225153 original size:29 final size:29
Alignment explanation
Indices: 58225113--58225201 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 29
58225103 CCCAATCTTG
* * * *
58225113 TTCAAATGGCCCATTTCGCCCAGTTCATA
1 TTCATATGGCCCATTACGCCCAATTCACA
* * *
58225142 TTCTTATGGCCCACTACGCCCAATTCACC
1 TTCATATGGCCCATTACGCCCAATTCACA
* * *
58225171 TTCATATGGCCCATTAGGCCTAAATCACA
1 TTCATATGGCCCATTACGCCCAATTCACA
58225200 TT
1 TT
58225202 ATACTCATGC
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (29 bp):
TTCATATGGCCCATTACGCCCAATTCACA
Found at i:58225444 original size:8 final size:8
Alignment explanation
Indices: 58225422--58225483 Score: 61
Period size: 8 Copynumber: 7.8 Consensus size: 8
58225412 TCAACTTTTT
58225422 GCTTTTCG
1 GCTTTTCG
* * *
58225430 ACATTTCA
1 GCTTTTCG
58225438 GCTTTTCG
1 GCTTTTCG
*
58225446 ACTTTTCG
1 GCTTTTCG
* *
58225454 GCATTTCA
1 GCTTTTCG
*
58225462 GCTTTTTG
1 GCTTTTCG
58225470 GCTTTTCG
1 GCTTTTCG
58225478 GCTTTT
1 GCTTTT
58225484 ACCGATTCAT
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.10, C:0.23, G:0.18, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:58225478 original size:24 final size:24
Alignment explanation
Indices: 58225416--58225479 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
58225406 CGTAGCTCAA
*
58225416 CTTTTT-GCTTTTCGACATTTCAG
1 CTTTTTGGCTTTTCGGCATTTCAG
* *
58225439 CTTTTCGACTTTTCGGCATTTCAG
1 CTTTTTGGCTTTTCGGCATTTCAG
58225463 CTTTTTGGCTTTTCGGC
1 CTTTTTGGCTTTTCGGC
58225480 TTTTACCGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 5 0.14
24 30 0.86
ACGTcount: A:0.09, C:0.23, G:0.17, T:0.50
Consensus pattern (24 bp):
CTTTTTGGCTTTTCGGCATTTCAG
Found at i:58226726 original size:16 final size:17
Alignment explanation
Indices: 58226698--58226736 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
58226688 ACAAAGAAAG
58226698 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGGGATT
58226715 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCGGGATT
58226731 TTTGGG
1 TTTGGG
58226737 GCATTACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.08, C:0.05, G:0.38, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCGGGATT
Found at i:58232726 original size:24 final size:24
Alignment explanation
Indices: 58232682--58232727 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
58232672 GTGAAACTGC
*
58232682 AAAGGCTGGAAAGCTAAAAAGTAG
1 AAAGGCTGGAAAGCCAAAAAGTAG
*
58232706 AAAGGCT-GAACAGCCAGAAAGT
1 AAAGGCTGGAA-AGCCAAAAAGT
58232728 GGGTTGTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.48, C:0.13, G:0.28, T:0.11
Consensus pattern (24 bp):
AAAGGCTGGAAAGCCAAAAAGTAG
Found at i:58233153 original size:27 final size:28
Alignment explanation
Indices: 58233123--58233185 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
58233113 CCTTATGTAA
* *
58233123 TAAAATGATCGA-AAAACCCTTATAGGG
1 TAAAATGATCGATAAAACCCTGATAAGG
* *
58233150 TAAAATGA-CTATAATACCCTGATAAGG
1 TAAAATGATCGATAAAACCCTGATAAGG
58233177 TAAAATGAT
1 TAAAATGAT
58233186 GGATTTGTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (28 bp):
TAAAATGATCGATAAAACCCTGATAAGG
Found at i:58237414 original size:21 final size:22
Alignment explanation
Indices: 58237388--58237429 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
58237378 CTCTTGAAAC
58237388 AGGGGT-ACACGCCAGTGTGGA
1 AGGGGTGACACGCCAGTGTGGA
*
58237409 AGGGGTGACACGCCCGTGTGG
1 AGGGGTGACACGCCAGTGTGG
58237430 CCTTCTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.19, C:0.21, G:0.45, T:0.14
Consensus pattern (22 bp):
AGGGGTGACACGCCAGTGTGGA
Found at i:58238126 original size:16 final size:16
Alignment explanation
Indices: 58238107--58238140 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58238097 AACAATTGAA
58238107 CATACACTTGATCATT
1 CATACACTTGATCATT
* *
58238123 CATACATTTGTTCATT
1 CATACACTTGATCATT
58238139 CA
1 CA
58238141 GGGAAGCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (16 bp):
CATACACTTGATCATT
Found at i:58238870 original size:49 final size:49
Alignment explanation
Indices: 58238715--58238992 Score: 201
Period size: 49 Copynumber: 5.7 Consensus size: 49
58238705 ATAGGGTACG
* * *
58238715 ATGCCGATGCCATGTTCCAAACATGTTCTTACACTAGCTCTCA--CATCT
1 ATGCCGATGCCATGTCCCAAACA-GGTCTTACACTAGCTCTCATTTATCT
* * * * * * **
58238763 AAGTCGATGCCAAGTCCCAGACAAGTCTTAAACT-GACT-TACATACAT-T
1 ATGCCGATGCCATGTCCCAAACAGGTCTTACACTAG-CTCT-CATTTATCT
* * * *
58238811 GAGGCTGATGCCATGTCCCAAACAGGTCTCACACTGGCTCTCATTTATCT
1 -ATGCCGATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTTATCT
* * * *
58238861 ATGCCGATGCCATGTCCCATACAGGTCTTACACTAACT-TGCATGTCT-T
1 ATGCCGATGCCATGTCCCAAACAGGTCTTACACTAGCTCT-CATTTATCT
* ** * *
58238909 GAGGCTAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCT
1 -ATGCCGATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTTATCT
* * **
58238959 GTGTCGATGCTGTGTCCCAAACAGGTCTTACACT
1 ATGCCGATGCCATGTCCCAAACAGGTCTTACACT
58238993 GACACACATA
Statistics
Matches: 176, Mismatches: 42, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
46 2 0.01
47 12 0.07
48 21 0.12
49 136 0.77
50 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTTATCT
Found at i:58238878 original size:98 final size:97
Alignment explanation
Indices: 58238720--58238995 Score: 322
Period size: 98 Copynumber: 2.8 Consensus size: 97
58238710 GTACGATGCC
* * * * * *
58238720 GATGCCATGTTCCAAACATGTTCTTACACTAGCTCTCA-CATCTAAGTCGATGCCAAGTCCCAGA
1 GATGCCATGTCCCAAACA-GGTCTTACACTAGCTCTCATTATCTATGTCGATGCCATGTCCCAAA
* *
58238784 CAAGTCTTAAACTGACTTACAT-ACATTGAGGCT
65 CAGGTCTTACACTGACTTACATGAC-TTGAGGCT
* * * *
58238817 GATGCCATGTCCCAAACAGGTCTCACACTGGCTCTCATTTATCTATGCCGATGCCATGTCCCATA
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCA-TTATCTATGTCGATGCCATGTCCCAAA
* * *
58238882 CAGGTCTTACACTAACTTGCATGTCTTGAGGCT
65 CAGGTCTTACACTGACTTACATGACTTGAGGCT
* * * **
58238915 AATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCTGTGTCGATGCTGTGTCCCAAA
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCA-TTATCTATGTCGATGCCATGTCCCAAA
58238980 CAGGTCTTACACTGAC
65 CAGGTCTTACACTGAC
58238996 ACACATATCA
Statistics
Matches: 151, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
96 16 0.11
97 17 0.11
98 117 0.77
99 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTATCTATGTCGATGCCATGTCCCAAAC
AGGTCTTACACTGACTTACATGACTTGAGGCT
Found at i:58240726 original size:34 final size:34
Alignment explanation
Indices: 58240653--58240731 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
58240643 TCAATGCTCT
* * *
58240653 CTTT-GTTATGTTTGGTGGTTTGGCAATATGTGC
1 CTTTAGTTGTGTTTGGTGGCTTGGCAACATGTGC
* *
58240686 CCTTAGTTGTGTTTGGTGGCTTGGC-ACATGTTC
1 CTTTAGTTGTGTTTGGTGGCTTGGCAACATGTGC
58240719 GCTTTAG-TGTGTT
1 -CTTTAGTTGTGTT
58240732 AGGAGGGATG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
33 15 0.39
34 23 0.61
ACGTcount: A:0.10, C:0.13, G:0.30, T:0.47
Consensus pattern (34 bp):
CTTTAGTTGTGTTTGGTGGCTTGGCAACATGTGC
Found at i:58247451 original size:15 final size:15
Alignment explanation
Indices: 58247429--58247491 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
58247419 AAGAAAACGA
58247429 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
58247444 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
* *
58247458 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
58247474 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
58247489 ATA
1 ATA
58247492 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 4 0.11
15 30 0.81
16 3 0.08
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:58247461 original size:30 final size:30
Alignment explanation
Indices: 58247427--58247486 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
58247417 ACAAGAAAAC
*
58247427 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
58247457 GAATAAAGAGATCCAGGATAAAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
58247487 AGATACGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:58250504 original size:93 final size:93
Alignment explanation
Indices: 58250392--58250563 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
58250382 GCCCATAAGT
* *
58250392 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58250457 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
58250485 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
58250550 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
58250564 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:58250559 original size:46 final size:46
Alignment explanation
Indices: 58250384--58250559 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
58250374 TGTAACCCGC
* *
58250384 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
58250430 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
58250476 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
58250523 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
58250560 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:58252340 original size:13 final size:13
Alignment explanation
Indices: 58252322--58252387 Score: 132
Period size: 13 Copynumber: 5.1 Consensus size: 13
58252312 GAAGTAATCG
58252322 CACACGGGCGTGT
1 CACACGGGCGTGT
58252335 CACACGGGCGTGT
1 CACACGGGCGTGT
58252348 CACACGGGCGTGT
1 CACACGGGCGTGT
58252361 CACACGGGCGTGT
1 CACACGGGCGTGT
58252374 CACACGGGCGTGT
1 CACACGGGCGTGT
58252387 C
1 C
58252388 CCTGTCGAGC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 53 1.00
ACGTcount: A:0.15, C:0.32, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:58266500 original size:47 final size:45
Alignment explanation
Indices: 58266298--58266660 Score: 222
Period size: 47 Copynumber: 7.8 Consensus size: 45
58266288 TGGGATATAT
* * *
58266298 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGG-ACTCATCT-C-TG
* * * *
58266348 TGCTGATGCATGTCCCAGACATGTCTTACACTAG-CACAACTCT-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGACTCATCTCTG
** *
58266391 TAGCCGATGTGTGTCCCAGACACGTCTTACACTGG-CT-ATCTCTG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGACTCATCTCTG
* *
58266435 TCGAGGCCCATGCATGTCCCAGACATGTCTTACTCTGGAACTCATCTCTG
1 T----GCCGATGCATGTCCCAGACATGTCTTACACTGG-ACTCATCTCTG
* * *
58266485 TGCCGATGCCGTGTCCCAGACATGGTCTTACACTGGTTA-TCATAGTATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGG--ACTCAT-CTCTG
* * * * * * * *
58266534 -GCTGATGCATGTCCCAAACATGACTTACACTAG-CCCTTGTTTGG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGACTCATCTCT-G
* *
58266578 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGG-CTC-TCATAATG
1 -TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGACTCATC-T-CTG
*
58266626 TGGCCGAAGCATGTCCCAGACATGTCTTACACTGG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGG
58266661 TGCACGAATC
Statistics
Matches: 251, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
43 9 0.04
44 33 0.13
45 1 0.00
46 39 0.16
47 82 0.33
48 51 0.20
49 21 0.08
50 15 0.06
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGACTCATCTCTG
Found at i:58266549 original size:94 final size:92
Alignment explanation
Indices: 58266298--58266658 Score: 347
Period size: 94 Copynumber: 3.9 Consensus size: 92
58266288 TGGGATATAT
* * *
58266298 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTC
*
58266362 CCAGACATGTCTTACACTAGCACAACTCT-
63 CCAGACATGTCTTACACTAGCACATCTCTG
** * * *
58266391 TAGCCGATG-TGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCCATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGT
* * *
58266452 CCCAGACATGTCTTACTCTGGAACTCATCTCTG
62 CCCAGACATGTCTTACACT--AGCACATCTCTG
* * *
58266485 TGCCGATGCCGTGTCCCAGACATGGTCTTACACTGGTTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
* * * * * *
58266550 AACATGACTTACACTAGCCCTTGTTTGG
66 GACATGTCTTACACTAGCACATCTCT-G
* * * * *
58266578 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCC
58266643 AGACATGTCTTACACT
65 AGACATGTCTTACACT
58266659 GGTGCACGAA
Statistics
Matches: 219, Mismatches: 35, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
91 29 0.13
92 23 0.11
93 30 0.14
94 117 0.53
95 19 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACATCTCTG
Found at i:58298868 original size:31 final size:31
Alignment explanation
Indices: 58298800--58298873 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
58298790 ACACCTACAG
* * *
58298800 AGATAGTCTGTTGGGACAGTAAACACATAAC
1 AGATAGTCTGCTGGGACAATAAACACAAAAC
* * *
58298831 AAATAGTCTGCTGGGACAATAAACATAAAAT
1 AGATAGTCTGCTGGGACAATAAACACAAAAC
58298862 AGATAGTCTGCT
1 AGATAGTCTGCT
58298874 AAGATAGTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (31 bp):
AGATAGTCTGCTGGGACAATAAACACAAAAC
Found at i:58298930 original size:31 final size:32
Alignment explanation
Indices: 58298850--58298954 Score: 87
Period size: 31 Copynumber: 3.4 Consensus size: 32
58298840 GCTGGGACAA
*
58298850 TAAACATA-AAATAGATAGT-C-TGCTAAGATAG
1 TAAACACAGAAATAGATAGTCCAT-C-AAGATAG
* * ***
58298881 TAGACACA-AAATAGATAGTTCATTGGGATAG
1 TAAACACAGAAATAGATAGTCCATCAAGATAG
*
58298912 TAAACACAGAAA-ATATAGTCCATCAAGATAG
1 TAAACACAGAAATAGATAGTCCATCAAGATAG
58298943 TAAACAC-GAAAT
1 TAAACACAGAAAT
58298955 GGTTCGCCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
30 4 0.07
31 50 0.85
32 4 0.07
33 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (32 bp):
TAAACACAGAAATAGATAGTCCATCAAGATAG
Found at i:58308523 original size:29 final size:29
Alignment explanation
Indices: 58308465--58308573 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
58308455 CCTGTATATA
* * *
58308465 GCCCACTAGGCCC-AATCTC-TTTCATATG
1 GCCCATTAGGCCCAAATCACATTT-ACATG
* *
58308493 GCCCATGAGGCCCAAATCACATTTGCATG
1 GCCCATTAGGCCCAAATCACATTTACATG
* **
58308522 GCCCTTTAGGCCCAAATCACATTTATGTG
1 GCCCATTAGGCCCAAATCACATTTACATG
*
58308551 GCCCATTAGGTCCAAATCACATT
1 GCCCATTAGGCCCAAATCACATT
58308574 ATATTCATGC
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
28 11 0.16
29 53 0.79
30 3 0.04
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTTACATG
Found at i:58308802 original size:8 final size:8
Alignment explanation
Indices: 58308789--58308847 Score: 75
Period size: 8 Copynumber: 7.4 Consensus size: 8
58308779 GTAGCCAAAC
58308789 TTTCGGCT
1 TTTCGGCT
*
58308797 TTTCGGCA
1 TTTCGGCT
58308805 TTTCGGCT
1 TTTCGGCT
*
58308813 TTTTGGCT
1 TTTCGGCT
58308821 TTTCGAG-T
1 TTTCG-GCT
*
58308829 TTTCGGCA
1 TTTCGGCT
58308837 TTTCGGCT
1 TTTCGGCT
58308845 TTT
1 TTT
58308848 GCCGATATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
7 1 0.02
8 41 0.95
9 1 0.02
ACGTcount: A:0.05, C:0.20, G:0.24, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:58308810 original size:16 final size:16
Alignment explanation
Indices: 58308789--58308847 Score: 84
Period size: 16 Copynumber: 3.7 Consensus size: 16
58308779 GTAGCCAAAC
58308789 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
58308805 TTTCGGCTTTTTGGCT
1 TTTCGGCTTTTCGGCA
58308821 TTTCGAG-TTTTCGGCA
1 TTTCG-GCTTTTCGGCA
58308837 TTTCGGCTTTT
1 TTTCGGCTTTT
58308848 GCCGATATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 1 0.03
16 35 0.95
17 1 0.03
ACGTcount: A:0.05, C:0.20, G:0.24, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:58310200 original size:15 final size:16
Alignment explanation
Indices: 58310174--58310212 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
58310164 TCGGGCCCAT
58310174 ACAAACACAAAACAACAA
1 ACAAACA-AAAA-AACAA
58310192 A-AAACAAAAAAACAA
1 ACAAACAAAAAAACAA
58310207 ACAAAC
1 ACAAAC
58310213 CAAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.30
16 8 0.40
17 5 0.25
18 1 0.05
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (16 bp):
ACAAACAAAAAAACAA
Found at i:58313001 original size:132 final size:131
Alignment explanation
Indices: 58312760--58313105 Score: 412
Period size: 132 Copynumber: 2.6 Consensus size: 131
58312750 ATTATTCATT
* *
58312760 TAAAAATTCTTTAAAACGAAGACGA-GATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAATG
1 TAAAAA-TCTTTAAAACGAAGACGATG-TTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
* *
58312824 TGTTGGGTTGCAATTTCCCGCTTGCTCAAAAAGATCGAATATCCCTTCAAAATTTCGTACATGTC
64 TGCTGGGTTGCAATTTCCCGCTTGCTCAAAAAGATCGAATATCCCTTCAAAATTTCGTACATGAC
58312889 TTC
129 TTC
* *
58312892 TAAAAATCCTTTAAAACGAAGACGATGTTCGATATTTGACAATTCGCGGAATCATGCCCTAACGT
1 TAAAAAT-CTTTAAAACGAAGACGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* * * * * * *
58312957 GCTGGGTTGCAATTTCTCGTTTGCTCAAAGTA-ATCGAATGTCCCTTTAGAATTTCGTTCATGAC
65 GCTGGGTTGCAATTTCCCGCTTGCTCAAA-AAGATCGAATATCCCTTCAAAATTTCGTACATGAC
58313021 TTC
129 TTC
* *** *** * *
58313024 TAAAAAATCTTTTAAACGAAGGTAATACACGATCTTTGGCAATTCG-GGAATCGTGCCCTATCGT
1 T-AAAAATCTTTAAAACGAAGACGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
*
58313088 GCTGGGTTGC-GTTTCCCG
65 GCTGGGTTGCAATTTCCCG
58313106 TTCGTTCAAT
Statistics
Matches: 184, Mismatches: 26, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
130 6 0.03
131 27 0.15
132 143 0.78
133 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (131 bp):
TAAAAATCTTTAAAACGAAGACGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
CTGGGTTGCAATTTCCCGCTTGCTCAAAAAGATCGAATATCCCTTCAAAATTTCGTACATGACTT
C
Found at i:58316591 original size:37 final size:37
Alignment explanation
Indices: 58316541--58316619 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
58316531 TTATTACGAA
* * *
58316541 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
58316578 GTCTTACCCGGACAAAATCCCCACGCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
58316615 GTCTT
1 GTCTT
58316620 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:58316816 original size:47 final size:47
Alignment explanation
Indices: 58316741--58317502 Score: 726
Period size: 47 Copynumber: 16.4 Consensus size: 47
58316731 TACGGGACTG
* * * * * * *
58316741 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
58316788 GTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
58316835 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
58316882 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
58316929 ATCACATATATACACTTTCGCATTCATCACTTCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
58316976 ACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
58317023 ACCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
58317070 ATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
58317117 ATCACATATATATACACTTTCACATTCATCACATCGG--A-TA--CACTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC-CTT
** * * * ****
58317162 -TCAC--AT-T-CA---TCACA-TCGGC-CGTTAGGCCTTATCACATATAT
1 ATCACATATATACACTTTCACATTCATCAC-ATCGGCC--ATTAGGCCT-T
* ** ** * *
58317203 AT-ACATTTTCACA-TTCATCACA-TCGGC-CATTAGGCC-TTA-TCACATAT
1 ATCACATATATACACTT--TCACATTCATCACA-TCGGCCATTAGGC-C-T-T
* * * * *
58317250 AT-ACACT-T-T-CACATTCATCA--CATCGGCCGTTAGGCC-TTA----TC
1 ATCACA-TATATACACTTTCA-CATTCATC--AC-ATCGGCCATTAGGCCTT
*
58317291 A-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
58317337 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
58317384 ATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 AT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
58317433 ATCACATTTATATACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
58317480 ATCACATATATATACACTTTCAC
1 ATCAC--ATATATACACTTTCAC
58317503 GTATACACAC
Statistics
Matches: 614, Mismatches: 54, Indels: 92
0.81 0.07 0.12
Matches are distributed among these distances:
33 1 0.00
34 6 0.01
35 5 0.01
38 3 0.00
39 2 0.00
40 4 0.01
41 12 0.02
42 9 0.01
43 8 0.01
44 14 0.02
45 9 0.01
46 7 0.01
47 426 0.69
48 1 0.00
49 107 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:58317152 original size:96 final size:96
Alignment explanation
Indices: 58316741--58317502 Score: 923
Period size: 94 Copynumber: 8.2 Consensus size: 96
58316731 TACGGGACTG
* * * * * * * *
58316741 ATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACC
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58316804 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
58316835 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58316898 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
* * * *
58316929 ATCAC--ATATATACACTTTCGCATTCATCACTTCGGCCATTAGGCCTTACCACATATATACACC
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58316992 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
*
58317023 A-C-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATACACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58317086 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
58317117 ATCACATATATATACACTTTCACATTCATCACATCGG--A-TA--CACTT-TCAC--AT-T-CA-
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC-CTTATCACATATATACAC
** * * *
58317171 --TCACA-TCGGC-CGTTAGGCC-TTA-TCACATAT
65 TTTCACATTCATCAC-ATCGGCCATTAGGC-C-T-T
* ** * * ** *
58317201 ATATACAT-T-TTCACATTCATCACA-TCGGC-CATTAGGCC--T------TATCACATATATAC
1 AT-CACATATATATACACT-TTCACATTCATCACA-TCGGCCATTAGGCCTTATCACATATATAC
*
58317254 ACTTTCACATTCATCACATCGGCCGTTAGGCCTT
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTT
58317288 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58317353 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
* * *
58317384 ATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATATACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58317449 TTCACATTCATCACATCGGCCATTAGGCCTT
66 TTCACATTCATCACATCGGCCATTAGGCCTT
58317480 ATCACATATATATACACTTTCAC
1 ATCACATATATATACACTTTCAC
58317503 GTATACACAC
Statistics
Matches: 579, Mismatches: 49, Indels: 78
0.82 0.07 0.11
Matches are distributed among these distances:
79 1 0.00
80 4 0.01
81 1 0.00
82 9 0.02
83 21 0.04
84 17 0.03
85 4 0.01
86 4 0.01
87 16 0.03
88 23 0.04
89 9 0.02
90 2 0.00
91 4 0.01
92 4 0.01
93 4 0.01
94 260 0.45
95 1 0.00
96 195 0.34
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:58317160 original size:26 final size:26
Alignment explanation
Indices: 58317128--58317179 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
58317118 TCACATATAT
58317128 ATACACTTTCACATTCATCACATCGG
1 ATACACTTTCACATTCATCACATCGG
58317154 ATACACTTTCACATTCATCACATCGG
1 ATACACTTTCACATTCATCACATCGG
58317180 CCGTTAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (26 bp):
ATACACTTTCACATTCATCACATCGG
Found at i:58317172 original size:75 final size:75
Alignment explanation
Indices: 58317079--58317228 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
58317069 TATCATATAT
58317079 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
58317144 ATCACATCGG
66 ATCACATCGG
* *
58317154 ATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
58317219 ATCACATCGG
66 ATCACATCGG
58317229 CCATTAGGCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (75 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
ATCACATCGG
Found at i:58317213 original size:49 final size:49
Alignment explanation
Indices: 58317154--58317502 Score: 611
Period size: 49 Copynumber: 7.2 Consensus size: 49
58317144 ATCACATCGG
*
58317154 ATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
58317203 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
58317250 ATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
58317299 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
58317346 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
58317395 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-T-T
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
58317442 ATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
58317491 ATACACTTTCAC
1 ATACACTTTCAC
58317503 GTATACACAC
Statistics
Matches: 285, Mismatches: 9, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
47 136 0.48
48 2 0.01
49 147 0.52
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
Found at i:58317250 original size:122 final size:121
Alignment explanation
Indices: 58317032--58317420 Score: 449
Period size: 122 Copynumber: 3.0 Consensus size: 121
58317022 TACCATATAT
58317032 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATACACTTTCACATTCAT
58317097 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
66 CACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGG
* *
58317154 ATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATATATATACACTTTCACATTC
58317219 ATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCG
64 ATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATC-G--G
* ** *
58317279 TTAGGC-CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 ATA--CACTT-TCAC----AT-T-CA---TCACA-TCGGC-CAT-------TAGGCCTTATCATA
*
58317343 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATATACACTTTCACA
45 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACA
58317408 TTCATCACATCGG
109 TTCATCACATCGG
58317421 CCATTAGGCC
Statistics
Matches: 230, Mismatches: 9, Indels: 36
0.84 0.03 0.13
Matches are distributed among these distances:
122 67 0.29
123 1 0.00
124 49 0.21
125 3 0.01
126 3 0.01
127 5 0.02
131 2 0.01
132 1 0.00
133 2 0.01
136 5 0.02
137 3 0.01
138 2 0.01
142 1 0.00
143 47 0.20
144 1 0.00
145 38 0.17
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (121 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGG
Found at i:58321128 original size:40 final size:40
Alignment explanation
Indices: 58321096--58321446 Score: 551
Period size: 40 Copynumber: 8.8 Consensus size: 40
58321086 CCAGGATGAT
* * *
58321096 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
58321136 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
58321176 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
58321216 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCCCGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
58321256 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58321296 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58321336 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
58321376 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58321416 TGCTCTTC-GGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
58321447 CTCAATTCTC
Statistics
Matches: 282, Mismatches: 29, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 22 0.08
40 260 0.92
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:58322709 original size:37 final size:37
Alignment explanation
Indices: 58322659--58322737 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
58322649 TTATTACGAA
* * *
58322659 GTCTTACCCGGACATAATCTCCACACG-ATGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTA-GTCATCGG
*
58322696 GTCTTACCCGGACAAAATCCCCACGCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
58322733 GTCTT
1 GTCTT
58322738 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:58323263 original size:49 final size:48
Alignment explanation
Indices: 58322856--58323545 Score: 1071
Period size: 47 Copynumber: 14.5 Consensus size: 48
58322846 CCCTTCGGGA
* * * * * *
58322856 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58322903 CCTGTCAC-ATATATACAC-TTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58322948 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58322995 CTTCTCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58323042 ATTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58323089 CTTATCAC-ATTTATACACTTTCGCATTCATCACTTCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58323136 CTTACCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58323183 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58323230 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58323279 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58323328 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCCTTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58323377 CTTATCAC-ATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58323424 CCTATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58323473 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58323520 CTTATCACATATATATACACTTTCAC
1 CTTATCACA-ATATATACACTTTCAC
58323546 GTATACACAC
Statistics
Matches: 602, Mismatches: 33, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
45 29 0.05
46 19 0.03
47 351 0.58
49 203 0.34
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (48 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58333791 original size:48 final size:50
Alignment explanation
Indices: 58333674--58333944 Score: 177
Period size: 48 Copynumber: 5.6 Consensus size: 50
58333664 GTAAAATGCT
* * **
58333674 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATACATCGGTGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACTCATACATCAATGTC
* *
58333724 GATGCCATGTCCCAGACATGGTCTTACACTGACACAT-ATA-AT-AATTTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACAC-TCATACATCAATGTC
* * * * * * ** * *
58333772 GATGCCATGTTCCAAACATGGTCCTACATTGGCTCGCAT--ATTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACTCATACATCAATGTC
* * ***
58333820 GATGCCATGTCCCAGACATGGTCTTACACT-AGCACACAT--ATCAACACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGA-CACTCATACATCAATGTC
* * * * * * *
58333868 GATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATA-AT--GTGGC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACTCATACATCAATGTC
*
58333915 TGATGCCATGTCCCAGACATGGTCTTACAC
1 -GATGCCATGTCCCAAACATGGTCTTACAC
58333945 CAGCACACAT
Statistics
Matches: 175, Mismatches: 39, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
47 3 0.02
48 132 0.75
49 4 0.02
50 35 0.20
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (50 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACACTCATACATCAATGTC
Found at i:58333936 original size:144 final size:144
Alignment explanation
Indices: 58333674--58333943 Score: 321
Period size: 144 Copynumber: 1.9 Consensus size: 144
58333664 GTAAAATGCT
* * * * ** *
58333674 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATACATCGGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATACAAC-G-ACCGATGCCATATCCCAG
** *
58333739 ACATGGTCTTACACTGACACATATAATAATTTCGATGCCATGTTCCAAACATGGTCCTACATTGG
64 ACATGGTCTTACACTGACACATATAATAATGGCGATGCCATGTCCCAAACATGGTCCTACATTGG
58333804 CTCGCATATTGAGGCC
129 CTCGCATATTGAGGCC
*
58333820 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC-ACCGATGCCATATCCCAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATA-CAACGACCGATGCCATATCCCAGA
* * * * * *
58333884 CATGGTCTTACATTGGCTC-TCATAAT-GTGGCTGATGCCATGTCCCAGACATGGTCTTACA
65 CATGGTCTTACACTGACACAT-ATAATAATGGC-GATGCCATGTCCCAAACATGGTCCTACA
58333944 CCAGCACACA
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
143 3 0.03
144 62 0.60
146 36 0.35
147 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (144 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATACAACGACCGATGCCATATCCCAGAC
ATGGTCTTACACTGACACATATAATAATGGCGATGCCATGTCCCAAACATGGTCCTACATTGGCT
CGCATATTGAGGCC
Found at i:58333960 original size:96 final size:96
Alignment explanation
Indices: 58333674--58333960 Score: 366
Period size: 96 Copynumber: 3.0 Consensus size: 96
58333664 GTAAAATGCT
* *
58333674 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATACATCGGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATA-AT--GTGGCGATGCCATGTCCCAG
* * *
58333739 ACATGGTCTTACA-CTG-ACACATAT-AATAATTTC
63 ACATGGTCTTACACCAGCACACATATCAA-CA-TCC
* * * * *
58333772 GATGCCATGTTCCAAACATGGTCCTACATTGGCTCGCATATTGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTGG-CGATGCCATGTCCCAGAC
*
58333837 ATGGTCTTACACTAGCACACATATCAACA-CC
65 ATGGTCTTACACCAGCACACATATCAACATCC
* *
58333868 GATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTGGC-GATGCCATGTCCCAGAC
58333933 ATGGTCTTACACCAGCACACATATCAAC
65 ATGGTCTTACACCAGCACACATATCAAC
58333961 CAAATGTCTT
Statistics
Matches: 165, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
95 3 0.02
96 113 0.68
97 2 0.01
98 45 0.27
99 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTGGCGATGCCATGTCCCAGACA
TGGTCTTACACCAGCACACATATCAACATCC
Found at i:58336922 original size:15 final size:16
Alignment explanation
Indices: 58336902--58336942 Score: 50
Period size: 14 Copynumber: 2.6 Consensus size: 16
58336892 GATCTAAACA
*
58336902 TATTCAAATTTCAC-T
1 TATTCAAATCTCACAT
58336917 TATTC-AATCTCACAT
1 TATTCAAATCTCACAT
58336932 TCATTCAAATC
1 T-ATTCAAATC
58336943 AATCCATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.32
15 7 0.32
16 4 0.18
17 4 0.18
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTCAAATCTCACAT
Found at i:58341397 original size:43 final size:42
Alignment explanation
Indices: 58341336--58341438 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 42
58341326 CGCATCTATC
** * *
58341336 ATGAACTCAGACCTCTCAATGAGCTCAGATGCTCACATCCATA
1 ATGAACTTGGACCTCTCAACGAGCTCAGATGC-CACATACATA
** * *
58341379 ATGAACTTGGACCTCTCAACGAGCTTGGATGCCACATATATC
1 ATGAACTTGGACCTCTCAACGAGCTCAGATGCCACATACATA
*
58341421 ATGAACTTGGACCACTCA
1 ATGAACTTGGACCTCTCA
58341439 GCAAGTTAGG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
42 24 0.47
43 27 0.53
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGAACTTGGACCTCTCAACGAGCTCAGATGCCACATACATA
Found at i:58341470 original size:43 final size:42
Alignment explanation
Indices: 58341381--58341490 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
58341371 CATCCATAAT
* * *
58341381 GAACTTGGACCTCTCAACGAGCTTGGATGCCACATATATCAT
1 GAACTTGGACCACTCAACAAGCTTGGATGCCACATATATCAC
* *
58341423 GAACTTGGACCACTCAGCAAG-TTAGGATTCTCACATATATCAC
1 GAACTTGGACCACTCAACAAGCTT-GGATGC-CACATATATCAC
* * * *
58341466 GAACTCGGATCGCTCAACGAGCTTG
1 GAACTTGGACCACTCAACAAGCTTG
58341491 AATTTCTAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 2 0.04
42 23 0.42
43 28 0.51
44 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
GAACTTGGACCACTCAACAAGCTTGGATGCCACATATATCAC
Found at i:58343841 original size:53 final size:53
Alignment explanation
Indices: 58343659--58343865 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
58343649 ATTAGGGTTT
* * * * *
58343659 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
58343713 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
58343768 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
58343821 AAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
58343866 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 40 0.33
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:58350619 original size:43 final size:43
Alignment explanation
Indices: 58350535--58350620 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
58350525 TATGTGATTC
* *
58350535 CGATATGTGTTTACAAGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATGTGGTTACAAGTAAGACCCTGTCTAGGACAGTGGCAT
*
58350578 CGATATGTGGTTACATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
1 CGATATGTGGTTACAAGTAAGACC-CTGTCTAGGACAG-TGGCAT
58350621 TGTACCATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACAAGTAAGACCCTGTCTAGGACAGTGGCAT
Found at i:58352196 original size:21 final size:22
Alignment explanation
Indices: 58352150--58352196 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
58352140 TGTAGAGTAA
*
58352150 GATAAGAAATTTTACTTATGGT
1 GATAAGAAATTTTACTTAAGGT
* *
58352172 -ATAAGTAATTTT-TTTAAGGT
1 GATAAGAAATTTTACTTAAGGT
58352192 GATAA
1 GATAA
58352197 ACGCAAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (22 bp):
GATAAGAAATTTTACTTAAGGT
Found at i:58353873 original size:21 final size:21
Alignment explanation
Indices: 58353847--58353900 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
58353837 GAACAATACC
*
58353847 ACACGCCCGTGTGT-TTTAGTG
1 ACACGCCCGTGTGTCTCTA-TG
*
58353868 ACACGCCCATGTGTCTCTATG
1 ACACGCCCGTGTGTCTCTATG
*
58353889 ACATGCCCGTGT
1 ACACGCCCGTGT
58353901 TGTCACCCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.30
Consensus pattern (21 bp):
ACACGCCCGTGTGTCTCTATG
Found at i:58356322 original size:4 final size:4
Alignment explanation
Indices: 58356306--58356336 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
58356296 CCCTTTTCTT
*
58356306 TTTC TTTC CTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
58356337 TTCATTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:58356376 original size:12 final size:12
Alignment explanation
Indices: 58356351--58356385 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
58356341 TTCCACTATC
* *
58356351 TGTTTCTTTCTT
1 TGTTTTTTTATT
58356363 TGTTTTTTTATT
1 TGTTTTTTTATT
58356375 TGTTTTTTTAT
1 TGTTTTTTTAT
58356386 GTTTTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.80
Consensus pattern (12 bp):
TGTTTTTTTATT
Found at i:58356400 original size:8 final size:8
Alignment explanation
Indices: 58356389--58356424 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
58356379 TTTTTATGTT
58356389 TTATTATA
1 TTATTATA
58356397 TTATTATA
1 TTATTATA
58356405 TTATTATA
1 TTATTATA
58356413 TTATTATA
1 TTATTATA
58356421 TTAT
1 TTAT
58356425 ATTAATTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTATTATA
Found at i:58361364 original size:32 final size:32
Alignment explanation
Indices: 58361323--58361390 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
58361313 GATCAAGAAG
58361323 AAAAAAAGGAGATATAATGGGTTAATGGCCTT
1 AAAAAAAGGAGATATAATGGGTTAATGGCCTT
*
58361355 AAAAAAAGGAGATATCATGGGTTAATGGCCTT
1 AAAAAAAGGAGATATAATGGGTTAATGGCCTT
58361387 AAAA
1 AAAA
58361391 TTATACTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.46, C:0.07, G:0.24, T:0.24
Consensus pattern (32 bp):
AAAAAAAGGAGATATAATGGGTTAATGGCCTT
Found at i:58361726 original size:60 final size:59
Alignment explanation
Indices: 58361629--58361746 Score: 200
Period size: 60 Copynumber: 2.0 Consensus size: 59
58361619 AACAACTGAT
* *
58361629 AAAAAAGGAATATTAAAACCTTTCAAAATTAACAAATATTGTATAACCTTATTCATTTG
1 AAAAAAGGAATATTAAAACCCTTCAAAATTAACAAATATTGTATAACATTATTCATTTG
*
58361688 AAAAGAAGGAATATTAAAACCCTTCAAAATTAACAAATATTGTCTAACATTATTCATTT
1 AAAA-AAGGAATATTAAAACCCTTCAAAATTAACAAATATTGTATAACATTATTCATTT
58361747 ATTATTTGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (59 bp):
AAAAAAGGAATATTAAAACCCTTCAAAATTAACAAATATTGTATAACATTATTCATTTG
Found at i:58362118 original size:19 final size:19
Alignment explanation
Indices: 58362095--58362153 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
58362085 TTATTTTCCT
58362095 AGAATTTTTTTATGTTTTA
1 AGAATTTTTTTATGTTTTA
* ** * *
58362114 TGAATTACTTAATATTTTA
1 AGAATTTTTTTATGTTTTA
* *
58362133 AAAATATTTTTATGTTTTA
1 AGAATTTTTTTATGTTTTA
58362152 AG
1 AG
58362154 TAATAATTTC
Statistics
Matches: 27, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (19 bp):
AGAATTTTTTTATGTTTTA
Found at i:58362185 original size:20 final size:20
Alignment explanation
Indices: 58362125--58362177 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
58362115 GAATTACTTA
* * *
58362125 ATATTTTAA-AAATATTTTT
1 ATATTTTAAGTAATAATTTC
*
58362144 ATGTTTTAAGTAATAATTTC
1 ATATTTTAAGTAATAATTTC
58362164 ATATTTTAAGTAAT
1 ATATTTTAAGTAAT
58362178 TCTTTCATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 8 0.29
20 20 0.71
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (20 bp):
ATATTTTAAGTAATAATTTC
Found at i:58362276 original size:111 final size:110
Alignment explanation
Indices: 58362048--58362268 Score: 302
Period size: 111 Copynumber: 2.0 Consensus size: 110
58362038 TGAAATAACT
* * * * *
58362048 ATTTCATATTTTAAGTAATTCTTTCATGTACTATAAATTATTTTCCTAGAATTTTTTTATGTTTT
1 ATTTCATATTTTAAGTAATTCTTTCATGTACCATAAATAATTTT-CTAGAACTCTTTCATGTTTT
* *
58362113 ATGAATTACTTAATATTTTAAAAATATTTTTATGTTTTAAGTAATA
65 ATGAATTACTTAATATTTTAAAAAAATTTATATGTTTTAAGTAATA
*
58362159 ATTTCATATTTTAAGTAATTCTTTCATGTACCGTAAACTAAATTTT-TAGAACTCTTTCATGTTT
1 ATTTCATATTTTAAGTAATTCTTTCATGTACCATAAA-T-AATTTTCTAGAACTCTTTCATGTTT
* *
58362223 TATGAATTACTTAGTTTTTTAAAAAAAATTTAT-TGTTTTAAGTAAT
64 TATGAATTACTTAATATTTT-AAAAAAATTTATATGTTTTAAGTAAT
58362269 TCTTTCATTT
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
111 81 0.84
112 11 0.11
113 5 0.05
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (110 bp):
ATTTCATATTTTAAGTAATTCTTTCATGTACCATAAATAATTTTCTAGAACTCTTTCATGTTTTA
TGAATTACTTAATATTTTAAAAAAATTTATATGTTTTAAGTAATA
Found at i:58368120 original size:119 final size:120
Alignment explanation
Indices: 58367938--58368160 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
58367928 TACTCATTCA
*
58367938 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
58368003 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
58368058 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
58368120 ATATGGTCACTTAGCACAAAGCCTTTGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
58368161 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:58368160 original size:40 final size:40
Alignment explanation
Indices: 58367936--58368160 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
58367926 GCTACTCATT
* *
58367936 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
58367976 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
58368016 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
58368056 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
58368095 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
58368136 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58368161 CATCATTCGA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 118 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:58369355 original size:56 final size:56
Alignment explanation
Indices: 58369288--58369407 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
58369278 TATTAGTTTA
58369288 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
58369344 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
58369400 TTGCCCAT
1 TTGCCCAT
58369408 CATCCCTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:58376570 original size:28 final size:28
Alignment explanation
Indices: 58376530--58376599 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
58376520 CATGAGATTG
*
58376530 GCACTAAGTGTGCGAGGTT-GATTA-TATA
1 GCACTAAGTGTGCGA-GTTCGACTATTA-A
58376558 GCACTAAGTGTGCGAGTTCGACTATTAA
1 GCACTAAGTGTGCGAGTTCGACTATTAA
58376586 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
58376600 GGCTTATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 3 0.08
28 34 0.87
29 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATTAA
Found at i:58379037 original size:21 final size:22
Alignment explanation
Indices: 58379013--58379059 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
58379003 AAGTCAACAG
*
58379013 GACGGCTC-ACGCCGTAGACAA
1 GACGGCTCAACACCGTAGACAA
*
58379034 GACGGCTCAACACCGTAGACAG
1 GACGGCTCAACACCGTAGACAA
58379056 GACG
1 GACG
58379060 ACTAAAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.30, C:0.32, G:0.30, T:0.09
Consensus pattern (22 bp):
GACGGCTCAACACCGTAGACAA
Found at i:58379365 original size:27 final size:27
Alignment explanation
Indices: 58379308--58379365 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
58379298 CATAATCATC
* * *
58379308 ATTTTACCATACAGGGGTATTACGTTC
1 ATTTTACCATACAAGGGTATTACGATA
*
58379335 ATTTTA-CACTACAAGGGTATTTCGATA
1 ATTTTACCA-TACAAGGGTATTACGATA
58379362 ATTT
1 ATTT
58379366 CATAAACTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACCATACAAGGGTATTACGATA
Found at i:58383271 original size:5 final size:5
Alignment explanation
Indices: 58383263--58383292 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
58383253 GTTTTTTATT
58383263 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
58383293 TTTCAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:58387716 original size:6 final size:6
Alignment explanation
Indices: 58387700--58387737 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
58387690 TTGTGTGTTC
58387700 TTTATTT TTTATT TTTA-T TTTATT TTTA-T TTTATT TTT
1 TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
58387738 CTCAATTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 10 0.34
6 15 0.52
7 4 0.14
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:58387722 original size:11 final size:11
Alignment explanation
Indices: 58387706--58387737 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
58387696 GTTCTTTATT
58387706 TTTTATTTTTA
1 TTTTATTTTTA
58387717 TTTTATTTTTA
1 TTTTATTTTTA
58387728 TTTTATTTTT
1 TTTTATTTTT
58387738 CTCAATTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:58387918 original size:36 final size:36
Alignment explanation
Indices: 58387872--58387946 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
58387862 ATTTAAAATG
58387872 AAAAAATACTTTTAAAATAGTGTTTATTATTTTGTA
1 AAAAAATACTTTTAAAATAGTGTTTATTATTTTGTA
58387908 AAAAAATACTTTTAAAATAGTGTTTATTATTTTGTA
1 AAAAAATACTTTTAAAATAGTGTTTATTATTTTGTA
58387944 AAA
1 AAA
58387947 GAGATGATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (36 bp):
AAAAAATACTTTTAAAATAGTGTTTATTATTTTGTA
Found at i:58388661 original size:16 final size:16
Alignment explanation
Indices: 58388637--58388670 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58388627 AAAATTAATA
58388637 TTTTAAAATATTTATT
1 TTTTAAAATATTTATT
* *
58388653 TTTTTAAATTTTTATT
1 TTTTAAAATATTTATT
58388669 TT
1 TT
58388671 AAATTATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTAAAATATTTATT
Found at i:58397392 original size:24 final size:24
Alignment explanation
Indices: 58397365--58397415 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
58397355 CATGAGAGTT
*
58397365 TAAAGGATGGTGAACAACTTTTAC
1 TAAAGGATAGTGAACAACTTTTAC
58397389 TAAAGGATAGTGAACAACTTTTAC
1 TAAAGGATAGTGAACAACTTTTAC
58397413 TAA
1 TAA
58397416 GTGATTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (24 bp):
TAAAGGATAGTGAACAACTTTTAC
Found at i:58402121 original size:40 final size:40
Alignment explanation
Indices: 58402018--58402264 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
58402008 CGGATGATAA
* *
58402018 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
58402058 CCGGGCTAAG-CCTGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58402097 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58402137 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58402177 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
58402217 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
58402257 CC-GGCTAA
1 CCGGGCTAA
58402265 ATTCCTAAGG
Statistics
Matches: 190, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 41 0.22
40 149 0.78
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.